I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 1 07:11:44 +14 2024 I: pbuilder-time-stamp: 1717175504 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [avogadrolibs_1.99.0-5.dsc] I: copying [./avogadrolibs_1.99.0.orig.tar.gz] I: copying [./avogadrolibs_1.99.0-5.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Mar 6 23:13:03 2024 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./avogadrolibs_1.99.0-5.dsc: no acceptable signature found dpkg-source: info: extracting avogadrolibs in avogadrolibs-1.99.0 dpkg-source: info: unpacking avogadrolibs_1.99.0.orig.tar.gz dpkg-source: info: unpacking avogadrolibs_1.99.0-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set_fragments_PR1612.patch dpkg-source: info: applying script_hashbang.patch dpkg-source: info: applying qtplugins_insertfragment.patch dpkg-source: info: applying fix_test_qtgui.patch dpkg-source: info: applying doc_mathjax.patch dpkg-source: info: applying use_overlayaxes.patch dpkg-source: info: applying tests_find_avogadrolibs.patch dpkg-source: info: applying tests_skip_spacegroup_HallNumber0.patch dpkg-source: info: applying fix_startup_crash_PR1621.patch dpkg-source: info: applying fetch_PDB_PR1642.patch dpkg-source: info: applying fetch_PDB_error_check_PR1646.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3855290/tmp/hooks/D01_modify_environment starting debug: Running on infom01-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 31 17:11 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3855290/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3855290/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=6502fa9a73464f2f8d20ae265a6b1965 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3855290 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AjRyBcIt/pbuilderrc_s6gp --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AjRyBcIt/b2 --logfile b2/build.log avogadrolibs_1.99.0-5.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 28 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3855290/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), dh-python, libarchive-dev, libeigen3-dev (>> 3.3), libgl2ps-dev, libglew-dev, libglvnd-dev, libhdf5-dev, libjs-mathjax, libsymspg-dev, molequeue, libmolequeue-dev, openbabel, pkgconf, python3-dev, python3-pybind11, python3-skbuild, python3-wheel, libqt5opengl5-dev, libqt5svg5-dev, qttools5-dev, zlib1g-dev, doxygen, graphviz dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19719 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libarchive-dev; however: Package libarchive-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev (>> 3.3); however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgl2ps-dev; however: Package libgl2ps-dev is not installed. pbuilder-satisfydepends-dummy depends on libglew-dev; however: Package libglew-dev is not installed. pbuilder-satisfydepends-dummy depends on libglvnd-dev; however: Package libglvnd-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on libsymspg-dev; however: Package libsymspg-dev is not installed. pbuilder-satisfydepends-dummy depends on molequeue; however: Package molequeue is not installed. pbuilder-satisfydepends-dummy depends on libmolequeue-dev; however: Package libmolequeue-dev is not installed. pbuilder-satisfydepends-dummy depends on openbabel; however: Package openbabel is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11; however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on python3-skbuild; however: Package python3-skbuild is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on libqt5opengl5-dev; however: Package libqt5opengl5-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5svg5-dev; however: Package libqt5svg5-dev is not installed. pbuilder-satisfydepends-dummy depends on qttools5-dev; however: Package qttools5-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-mathjax{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} iso-codes{a} libabsl20230802{a} libacl1-dev{a} libaec-dev{a} libaec0{a} libann0{a} libaom3{a} libarchive-dev{a} libarchive-zip-perl{a} libarchive13t64{a} libattr1-dev{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif16{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcap2-bin{a} libcdt5{a} libcgraph6{a} libclang-cpp16t64{a} libclang1-15t64{a} libclang1-16t64{a} libcom-err2{a} libcups2t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdw1t64{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libext2fs-dev{a} libext2fs2t64{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgd3{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libgl2ps-dev{a} libgl2ps1.4{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglew-dev{a} libglew2.2{a} libglib2.0-0t64{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgstreamer-plugins-base1.0-0{a} libgstreamer1.0-0{a} libgts-0.7-5t64{a} libgudev-1.0-0{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhyphen0{a} libice6{a} libicu-dev{a} libicu72{a} libinchi1{a} libinput-bin{a} libinput10{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} libldap-2.5-0{a} liblerc4{a} libllvm15t64{a} libllvm16t64{a} libllvm17t64{a} libltdl7{a} liblz4-dev{a} liblzma-dev{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmolequeue-dev{a} libmtdev1t64{a} libnghttp2-14{a} libopenbabel7{a} libopengl-dev{a} libopengl0{a} liborc-0.4-0t64{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5designercomponents5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5opengl5-dev{a} libqt5opengl5t64{a} libqt5positioning5{a} libqt5printsupport5t64{a} libqt5qml5{a} libqt5qmlmodels5{a} libqt5quick5{a} libqt5quickwidgets5{a} libqt5sensors5{a} libqt5sql5-sqlite{a} libqt5sql5t64{a} libqt5svg5{a} libqt5svg5-dev{a} libqt5test5t64{a} libqt5webchannel5{a} libqt5webkit5{a} libqt5widgets5t64{a} libqt5xml5t64{a} librav1e0{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libssl-dev{a} libsvtav1enc1d1{a} libsymspg-dev{a} libsymspg2{a} libsz2{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunwind8{a} libuv1t64{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwoff1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxt6t64{a} libxxf86vm1{a} libyuv0{a} libz3-4{a} libzstd-dev{a} lsb-release{a} m4{a} man-db{a} media-types{a} molequeue{a} netbase{a} nettle-dev{a} openbabel{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybind11-dev{a} python3{a} python3-dev{a} python3-distro{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pybind11{a} python3-setuptools{a} python3-skbuild{a} python3-wheel{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} qdoc-qt5{a} qhelpgenerator-qt5{a} qt5-assistant{a} qt5-qmake{a} qt5-qmake-bin{a} qtattributionsscanner-qt5{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} qttools5-dev{a} qttools5-dev-tools{a} readline-common{a} sensible-utils{a} shared-mime-info{a} tzdata{a} x11-common{a} x11proto-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl dbus fonts-liberation2 geoclue-2.0 gstreamer1.0-plugins-base javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libldap-common libltdl-dev libmail-sendmail-perl libpam-cap libsasl2-modules lynx mesa-vulkan-drivers psmisc publicsuffix python3-numpy qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xdg-user-dirs 0 packages upgraded, 342 newly installed, 0 to remove and 0 not upgraded. Need to get 277 MB of archives. After unpacking 1259 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.80.2-2 [1485 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get: 3 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libdw1t64 amd64 0.191-1+b1 [246 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libunwind8 amd64 1.6.2-3+b1 [51.7 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 libcap2-bin amd64 1:2.66-5 [34.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libgstreamer1.0-0 amd64 1.24.4-1 [1390 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 liborc-0.4-0t64 amd64 1:0.4.38-1 [191 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 iso-codes all 4.16.0-1 [2936 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.24.4-1 [982 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libhyphen0 amd64 2.8.8-7+b1 [30.6 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-5 [758 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libdouble-conversion3 amd64 3.3.0-1+b1 [41.0 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.42-4+b1 [246 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libqt5core5t64 amd64 5.15.13+dfsg-2 [1837 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libwayland-server0 amd64 1.22.0-2.1+b1 [33.0 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2 [116 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 24.1.0-2 [40.9 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libglapi-mesa amd64 24.1.0-2 [36.6 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.22.0-2.1+b1 [25.7 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [106 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [107 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2 [105 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2 [108 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [109 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B] Get: 48 http://deb.debian.org/debian unstable/main amd64 libegl-mesa0 amd64 24.1.0-2 [127 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libegl1 amd64 1.7.0-1+b1 [34.3 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2 [122 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.3.283.0-1 [125 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240517-1 [93.3 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-12 [23.7 MB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-9 [34.6 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 24.1.0-2 [8638 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 24.1.0-2 [151 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b1 [89.8 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libevdev2 amd64 1.13.1+dfsg-1+b1 [32.6 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [22.2 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libgudev-1.0-0 amd64 238-5 [14.4 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libwacom-common all 2.10.0-2 [62.5 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libwacom9 amd64 2.10.0-2 [22.4 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libinput-bin amd64 1.25.0-1+b2 [24.8 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libinput10 amd64 1.25.0-1+b2 [128 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libmd4c0 amd64 0.4.8-1+b1 [45.1 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libqt5dbus5t64 amd64 5.15.13+dfsg-2 [214 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 87 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libqt5network5t64 amd64 5.15.13+dfsg-2 [678 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.1-1.1+b1 [26.8 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b1 [22.2 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2 [105 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [105 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libxcb-xinput0 amd64 1.17.0-2 [130 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2 [129 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.41-2 [795 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.6.0-1+b1 [109 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1+b1 [16.2 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libqt5gui5t64 amd64 5.15.13+dfsg-2 [3450 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libqt5positioning5 amd64 5.15.13+dfsg-2 [206 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.7-1.2+b1 [247 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libqt5widgets5t64 amd64 5.15.13+dfsg-2 [2380 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libqt5printsupport5t64 amd64 5.15.13+dfsg-2 [204 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libqt5qml5 amd64 5.15.13+dfsg-2 [1364 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libqt5qmlmodels5 amd64 5.15.13+dfsg-2 [191 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libqt5quick5 amd64 5.15.13+dfsg-2 [1599 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libqt5sensors5 amd64 5.15.13-2 [113 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libqt5webchannel5 amd64 5.15.13-2 [58.3 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libwoff1 amd64 1.0.2-2+b1 [44.4 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1+b1 [232 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libqt5webkit5 amd64 5.212.0~alpha4-37 [11.9 MB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-4 [95.7 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.8.0-1 [441 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-4 [148 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.29.3-1 [2167 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.29.3-1+b1 [10.7 MB] Get: 166 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.1-1 [54.5 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 173 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 python3-distutils all 3.12.3-3.1 [131 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240422 [107 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libllvm16t64 amd64 1:16.0.6-27 [23.1 MB] Get: 184 http://deb.debian.org/debian unstable/main amd64 libclang-cpp16t64 amd64 1:16.0.6-27 [11.5 MB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libclang1-16t64 amd64 1:16.0.6-27 [6581 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libcdt5 amd64 2.42.2-9+b1 [39.8 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libcgraph6 amd64 2.42.2-9+b1 [63.6 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.8.2-2 [1869 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.4.2-1 [551 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-2+b1 [351 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 librav1e0 amd64 0.7.1-2 [900 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1888.20240509-4 [170 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.0.4-3 [106 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.17.6-1+b2 [9856 B] Get: 201 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.17.6-1+b2 [13.1 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.17.6-1+b2 [284 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-9+b3 [125 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2 [157 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.52.2+ds-1 [218 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.52.2+ds-1 [48.1 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.52.2+ds-1 [35.0 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libpathplan4 amd64 2.42.2-9+b1 [42.2 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libgvc6 amd64 2.42.2-9+b1 [682 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libgvpr2 amd64 2.42.2-9+b1 [189 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 liblab-gamut1 amd64 2.42.2-9+b1 [198 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 graphviz amd64 2.42.2-9+b1 [614 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.10.10+repack-3.3 [23.4 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libattr1-dev amd64 1:2.5.2-1 [36.0 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libacl1-dev amd64 2.3.2-2 [93.5 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 235 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 liblz4-dev amd64 1.9.4-2 [82.8 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [293 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get: 240 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.12.7+dfsg-2 [145 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.5+dfsg2-2 [358 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libext2fs2t64 amd64 1.47.1-1 [210 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libext2fs-dev amd64 1.47.1-1 [295 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b1 [329 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b1 [640 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.9.1-2.2 [1291 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libarchive-dev amd64 3.7.2-2 [562 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libllvm15t64 amd64 1:15.0.7-15 [23.2 MB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libclang1-15t64 amd64 1:15.0.7-15 [6366 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.8.0-1 [548 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.9-1+b1 [21.3 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3+b1 [40.8 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2 [181 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.7-1+b1 [875 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libglx-dev amd64 1.7.0-1+b1 [15.8 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libgl-dev amd64 1.7.0-1+b1 [101 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 libegl-dev amd64 1.7.0-1+b1 [19.5 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.1.0-1 [836 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libglvnd-core-dev amd64 1.7.0-1+b1 [13.4 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 libgles1 amd64 1.7.0-1+b1 [12.2 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 libgles2 amd64 1.7.0-1+b1 [17.3 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 libgles-dev amd64 1.7.0-1+b1 [50.8 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-1+b1 [31.1 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libopengl-dev amd64 1.7.0-1+b1 [5380 B] Get: 275 http://deb.debian.org/debian unstable/main amd64 libglvnd-dev amd64 1.7.0-1+b1 [5144 B] Get: 276 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dev amd64 24.1.0-2 [17.2 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2 [41.3 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 libgl2ps-dev amd64 1.4.2+dfsg1-2 [24.8 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 libglew2.2 amd64 2.2.0-4+b1 [175 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1+b1 [180 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1+b1 [219 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 libglew-dev amd64 2.2.0-4+b1 [256 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-3.3 [131 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-3.3 [89.3 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-3.3 [40.4 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-3.3 [21.3 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.10.10+repack-3.3 [2639 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 libinchi1 amd64 1.03+dfsg-4+b2 [436 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 296 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.2.6-8 [150 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 libmaeparser1 amd64 1.3.1-1+b1 [93.6 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 libmolequeue-dev amd64 0.9.0-1+b3 [70.4 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 libopenbabel7 amd64 3.1.1+dfsg-9+b8 [3175 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.11.8-1 [9560 B] Get: 304 http://deb.debian.org/debian unstable/main amd64 libqt5concurrent5t64 amd64 5.15.13+dfsg-2 [43.8 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 libqt5xml5t64 amd64 5.15.13+dfsg-2 [124 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 libqt5designer5 amd64 5.15.13-3 [2751 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 libqt5designercomponents5 amd64 5.15.13-3 [730 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 libqt5sql5t64 amd64 5.15.13+dfsg-2 [123 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 libqt5help5 amd64 5.15.13-3 [150 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 libqt5opengl5t64 amd64 5.15.13+dfsg-2 [149 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 libqt5test5t64 amd64 5.15.13+dfsg-2 [149 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 libvulkan-dev amd64 1.3.283.0-1 [1350 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 libxext-dev amd64 2:1.3.4-1+b1 [107 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 qt5-qmake-bin amd64 5.15.13+dfsg-2 [1045 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 qtchooser amd64 66-2 [26.3 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 qt5-qmake amd64 5.15.13+dfsg-2 [223 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 qtbase5-dev-tools amd64 5.15.13+dfsg-2 [765 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 qtbase5-dev amd64 5.15.13+dfsg-2 [1122 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 libqt5opengl5-dev amd64 5.15.13+dfsg-2 [50.7 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 libqt5quickwidgets5 amd64 5.15.13+dfsg-2 [39.9 kB] Get: 321 http://deb.debian.org/debian unstable/main amd64 libqt5sql5-sqlite amd64 5.15.13+dfsg-2 [58.2 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 libqt5svg5 amd64 5.15.13-2 [135 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 libqt5svg5-dev amd64 5.15.13-2 [13.0 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 libsymspg2 amd64 2.4.0-1 [196 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 libsymspg-dev amd64 2.4.0-1 [36.3 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 lsb-release all 12.0-2 [6564 B] Get: 327 http://deb.debian.org/debian unstable/main amd64 molequeue amd64 0.9.0-1+b3 [491 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 openbabel amd64 3.1.1+dfsg-9+b8 [128 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 pybind11-dev all 2.12.0-1 [198 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.11.8-1 [26.1 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 python3-distro all 1.9.0-1 [20.3 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 python3-pybind11 all 2.12.0-1 [208 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.43.0-1 [52.5 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 python3-skbuild all 0.17.6-2 [74.6 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 qdoc-qt5 amd64 5.15.13-3 [588 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 qhelpgenerator-qt5 amd64 5.15.13-3 [58.4 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 qt5-assistant amd64 5.15.13-3 [350 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 qtattributionsscanner-qt5 amd64 5.15.13-3 [32.1 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 qttools5-dev-tools amd64 5.15.13-3 [1033 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 qttools5-dev amd64 5.15.13-3 [187 kB] Fetched 277 MB in 4s (76.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libglib2.0-0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19719 files and directories currently installed.) Preparing to unpack .../000-libglib2.0-0t64_2.80.2-2_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.80.2-2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../001-libdrm-common_2.4.120-2_all.deb ... Unpacking libdrm-common (2.4.120-2) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../002-libdrm2_2.4.120-2_amd64.deb ... Unpacking libdrm2:amd64 (2.4.120-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../003-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package libdw1t64:amd64. Preparing to unpack .../004-libdw1t64_0.191-1+b1_amd64.deb ... Unpacking libdw1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package libunwind8:amd64. Preparing to unpack .../005-libunwind8_1.6.2-3+b1_amd64.deb ... Unpacking libunwind8:amd64 (1.6.2-3+b1) ... Selecting previously unselected package libcap2-bin. Preparing to unpack .../006-libcap2-bin_1%3a2.66-5_amd64.deb ... Unpacking libcap2-bin (1:2.66-5) ... Selecting previously unselected package libgstreamer1.0-0:amd64. Preparing to unpack .../007-libgstreamer1.0-0_1.24.4-1_amd64.deb ... Unpacking libgstreamer1.0-0:amd64 (1.24.4-1) ... Selecting previously unselected package liborc-0.4-0t64:amd64. Preparing to unpack .../008-liborc-0.4-0t64_1%3a0.4.38-1_amd64.deb ... Unpacking liborc-0.4-0t64:amd64 (1:0.4.38-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../009-iso-codes_4.16.0-1_all.deb ... Unpacking iso-codes (4.16.0-1) ... Selecting previously unselected package libgstreamer-plugins-base1.0-0:amd64. Preparing to unpack .../010-libgstreamer-plugins-base1.0-0_1.24.4-1_amd64.deb ... Unpacking libgstreamer-plugins-base1.0-0:amd64 (1.24.4-1) ... Selecting previously unselected package libhyphen0:amd64. Preparing to unpack .../011-libhyphen0_2.8.8-7+b1_amd64.deb ... Unpacking libhyphen0:amd64 (2.8.8-7+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../012-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../013-libjpeg62-turbo_1%3a2.1.5-3_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3) ... 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Setting up libopenbabel7 (3.1.1+dfsg-9+b8) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libxaw7:amd64 (2:1.0.14-1+b2) ... Setting up libqt5test5t64:amd64 (5.15.13+dfsg-2) ... Setting up python3-wheel (0.43.0-1) ... Setting up pybind11-dev (2.12.0-1) ... Setting up qtbase5-dev-tools (5.15.13+dfsg-2) ... Setting up python3-packaging (24.0-1) ... Setting up libgl1:amd64 (1.7.0-1+b1) ... Setting up libqt5qml5:amd64 (5.15.13+dfsg-2) ... Setting up libqt5webchannel5:amd64 (5.15.13-2) ... Setting up libglew2.2:amd64 (2.2.0-4+b1) ... Setting up libglx-dev:amd64 (1.7.0-1+b1) ... Setting up libqt5sensors5:amd64 (5.15.13-2) ... Setting up libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-3.3) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up libgl-dev:amd64 (1.7.0-1+b1) ... Setting up python3-pybind11 (2.12.0-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... Setting up libvulkan-dev:amd64 (1.3.283.0-1) ... Setting up libqt5qmlmodels5:amd64 (5.15.13+dfsg-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-distro (1.9.0-1) ... Setting up libegl-dev:amd64 (1.7.0-1+b1) ... Setting up python3-skbuild (0.17.6-2) ... Setting up openbabel (3.1.1+dfsg-9+b8) ... Setting up libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-3.3) ... Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... Setting up libqt5gui5t64:amd64 (5.15.13+dfsg-2) ... Setting up python3-dev (3.11.8-1) ... Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libglu1-mesa-dev:amd64 (9.0.2-1.1+b1) ... Setting up libgles-dev:amd64 (1.7.0-1+b1) ... Setting up libqt5quick5:amd64 (5.15.13+dfsg-2) ... Setting up dh-python (6.20240422) ... Setting up libqt5widgets5t64:amd64 (5.15.13+dfsg-2) ... Setting up libqt5svg5:amd64 (5.15.13-2) ... Setting up libglvnd-dev:amd64 (1.7.0-1+b1) ... Setting up libgl2ps-dev (1.4.2+dfsg1-2) ... Setting up libqt5help5:amd64 (5.15.13-3) ... Setting up libqt5quickwidgets5:amd64 (5.15.13+dfsg-2) ... Setting up libglew-dev:amd64 (2.2.0-4+b1) ... Setting up libqt5svg5-dev:amd64 (5.15.13-2) ... Setting up molequeue (0.9.0-1+b3) ... Setting up libgl1-mesa-dev:amd64 (24.1.0-2) ... Setting up libqt5opengl5t64:amd64 (5.15.13+dfsg-2) ... Setting up libqt5printsupport5t64:amd64 (5.15.13+dfsg-2) ... Setting up libqt5designer5:amd64 (5.15.13-3) ... Setting up qhelpgenerator-qt5 (5.15.13-3) ... Setting up libqt5webkit5:amd64 (5.212.0~alpha4-37) ... Setting up libqt5designercomponents5:amd64 (5.15.13-3) ... Setting up qtbase5-dev:amd64 (5.15.13+dfsg-2) ... Setting up qt5-assistant (5.15.13-3) ... Setting up qttools5-dev-tools (5.15.13-3) ... Setting up libqt5opengl5-dev:amd64 (5.15.13+dfsg-2) ... Setting up qttools5-dev:amd64 (5.15.13-3) ... Setting up libheif-plugin-dav1d:amd64 (1.17.6-1+b2) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-1+b2) ... Setting up libheif1:amd64 (1.17.6-1+b2) ... Setting up libgd3:amd64 (2.3.3-9+b3) ... Setting up libgvc6 (2.42.2-9+b1) ... Setting up graphviz (2.42.2-9+b1) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.34-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/3855290/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3855290/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/avogadrolibs-1.99.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../avogadrolibs_1.99.0-5_source.changes dpkg-buildpackage: info: source package avogadrolibs dpkg-buildpackage: info: source version 1.99.0-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build dh build --with python3 --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0' dh_auto_configure -- -DUSE_HDF5=ON -DUSE_LIBMSYM=OFF -DUSE_MMTF=OFF -DOpenGL_GL_PREFERENCE=GLVND -DCMAKE_SKIP_RPATH=TRUE -DUSE_PYTHON=ON -DUSE_VTK=OFF -DENABLE_TRANSLATIONS=ON -DUSE_QT_OPENGL=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_HDF5=ON -DUSE_LIBMSYM=OFF -DUSE_MMTF=OFF -DOpenGL_GL_PREFERENCE=GLVND -DCMAKE_SKIP_RPATH=TRUE -DUSE_PYTHON=ON -DUSE_VTK=OFF -DENABLE_TRANSLATIONS=ON -DUSE_QT_OPENGL=ON .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.99.0 -- Found Eigen3: /usr/include/eigen3 -- Found SPGLIB: /usr/include -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so -- Found GLEW: /usr/include (found version "2.2.0") CMake Warning (dev) at avogadro/qtgui/CMakeLists.txt:22 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.9", minimum required is "3") Avogadro Generators not found at /build/reproducible-path/avogadrolibs-1.99.0/../avogadrogenerators! -- Found LibArchive: /usr/lib/x86_64-linux-gnu/libarchive.so (found version "3.7.2") CMake Deprecation Warning at python/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found Python: /usr/bin/python3 (found version "3.11.9") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.12.0") -- Configuring done (2.5s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0' dh_auto_configure -- -DBUILD_DOCUMENTATION=ON -DUSE_HDF5=ON -DUSE_LIBMSYM=OFF -DUSE_MMTF=OFF -DOpenGL_GL_PREFERENCE=GLVND -DCMAKE_SKIP_RPATH=TRUE -DUSE_PYTHON=ON -DUSE_VTK=OFF -DENABLE_TRANSLATIONS=ON -DUSE_QT_OPENGL=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_DOCUMENTATION=ON -DUSE_HDF5=ON -DUSE_LIBMSYM=OFF -DUSE_MMTF=OFF -DOpenGL_GL_PREFERENCE=GLVND -DCMAKE_SKIP_RPATH=TRUE -DUSE_PYTHON=ON -DUSE_VTK=OFF -DENABLE_TRANSLATIONS=ON -DUSE_QT_OPENGL=ON .. -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.99.0 CMake Warning (dev) at avogadro/qtgui/CMakeLists.txt:22 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. Avogadro Generators not found at /build/reproducible-path/avogadrolibs-1.99.0/../avogadrogenerators! -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot CMake Deprecation Warning at python/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found pybind11: /usr/include (found version "2.12.0") -- Configuring done (0.8s) -- Generating done (0.8s) -- Build files have been written to: /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/avogadrolibs-1.99.0 -B/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/CMakeFiles 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/usr/bin/c++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT thirdparty/CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o -MF CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o.d -o CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml/pugixml.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 0%] Building C object 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-I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o -MF CMakeFiles/Core.dir/crystaltools.cpp.o.d -o CMakeFiles/Core.dir/crystaltools.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp [ 1%] Building CXX object avogadro/core/CMakeFiles/Core.dir/cube.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro 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-I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/elements.cpp.o -MF CMakeFiles/Core.dir/elements.cpp.o.d -o CMakeFiles/Core.dir/elements.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elements.cpp [ 2%] Building CXX object avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o -MF CMakeFiles/Core.dir/dihedraliterator.cpp.o.d -o CMakeFiles/Core.dir/dihedraliterator.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.cpp [ 2%] Linking C static library libgwavi.a [ 2%] Linking CXX executable ../../bin/encodefile cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/thirdparty/libgwavi && /usr/bin/cmake -P CMakeFiles/gwavi.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/utilities/encodefile && /usr/bin/cmake -E cmake_link_script CMakeFiles/encodefile.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed CMakeFiles/encodefile.dir/encodefile.cxx.o -o ../../bin/encodefile cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/thirdparty/libgwavi && /usr/bin/cmake -E cmake_link_script CMakeFiles/gwavi.dir/link.txt --verbose=1 /usr/bin/ar qc libgwavi.a 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/usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/nameatomtyper.cpp.o -MF CMakeFiles/Core.dir/nameatomtyper.cpp.o.d -o CMakeFiles/Core.dir/nameatomtyper.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/nameatomtyper.cpp [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 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-DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/ringperceiver.cpp.o -MF CMakeFiles/Core.dir/ringperceiver.cpp.o.d -o CMakeFiles/Core.dir/ringperceiver.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/ringperceiver.cpp [ 5%] Building CXX object 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CMakeFiles/Core.dir/secondarystructure.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/secondarystructure.cpp [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/slaterset.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/slaterset.cpp.o -MF CMakeFiles/Core.dir/slaterset.cpp.o.d -o CMakeFiles/Core.dir/slaterset.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slaterset.cpp [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/slatersettools.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/slatersettools.cpp.o -MF CMakeFiles/Core.dir/slatersettools.cpp.o.d -o CMakeFiles/Core.dir/slatersettools.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slatersettools.cpp [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/spacegroups.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/spacegroups.cpp.o -MF CMakeFiles/Core.dir/spacegroups.cpp.o.d -o CMakeFiles/Core.dir/spacegroups.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroups.cpp [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/symbolatomtyper.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/symbolatomtyper.cpp.o -MF CMakeFiles/Core.dir/symbolatomtyper.cpp.o.d -o CMakeFiles/Core.dir/symbolatomtyper.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/symbolatomtyper.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/unitcell.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/unitcell.cpp.o -MF CMakeFiles/Core.dir/unitcell.cpp.o.d -o CMakeFiles/Core.dir/unitcell.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/variantmap.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/variantmap.cpp.o -MF CMakeFiles/Core.dir/variantmap.cpp.o.d -o CMakeFiles/Core.dir/variantmap.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variantmap.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/version.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/version.cpp.o -MF CMakeFiles/Core.dir/version.cpp.o.d -o CMakeFiles/Core.dir/version.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/version.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/sharedmutex.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/sharedmutex.cpp.o -MF CMakeFiles/Core.dir/sharedmutex.cpp.o.d -o CMakeFiles/Core.dir/sharedmutex.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/sharedmutex.cpp [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/avospglib.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/c++ -DCore_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/avospglib.cpp.o -MF CMakeFiles/Core.dir/avospglib.cpp.o.d -o CMakeFiles/Core.dir/avospglib.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/avospglib.cpp [ 6%] Linking CXX static library libpugixml.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -P CMakeFiles/pugixml.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E cmake_link_script CMakeFiles/pugixml.dir/link.txt --verbose=1 /usr/bin/ar qc libpugixml.a CMakeFiles/pugixml.dir/pugixml/pugixml.cpp.o /usr/bin/ranlib libpugixml.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 6%] Built target pugixml make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/utilities/bodr /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/utilities/bodr /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 6%] Building CXX object utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/utilities/bodr && /usr/bin/c++ -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -MF CMakeFiles/bodrparse.dir/bodrparse.cxx.o.d -o CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /build/reproducible-path/avogadrolibs-1.99.0/utilities/bodr/bodrparse.cxx [ 6%] Linking CXX executable ../../bin/bodrparse cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/utilities/bodr && /usr/bin/cmake -E cmake_link_script CMakeFiles/bodrparse.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed CMakeFiles/bodrparse.dir/bodrparse.cxx.o -o ../../bin/bodrparse ../../thirdparty/libpugixml.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 6%] Built target bodrparse /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.cpp: In function 'void __static_initialization_and_destruction_0()': /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without 162 | } // namespace Avogadro | ^ [ 6%] Linking CXX shared library ../../lib/libAvogadroCore.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/Core.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libAvogadroCore.so.1 -o ../../lib/libAvogadroCore.so.1.99.0 CMakeFiles/Core.dir/angleiterator.cpp.o CMakeFiles/Core.dir/atomutilities.cpp.o CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o CMakeFiles/Core.dir/crystaltools.cpp.o CMakeFiles/Core.dir/cube.cpp.o CMakeFiles/Core.dir/elements.cpp.o CMakeFiles/Core.dir/dihedraliterator.cpp.o CMakeFiles/Core.dir/gaussianset.cpp.o CMakeFiles/Core.dir/gaussiansettools.cpp.o CMakeFiles/Core.dir/graph.cpp.o CMakeFiles/Core.dir/layer.cpp.o CMakeFiles/Core.dir/layermanager.cpp.o CMakeFiles/Core.dir/mesh.cpp.o CMakeFiles/Core.dir/molecule.cpp.o CMakeFiles/Core.dir/mutex.cpp.o CMakeFiles/Core.dir/nameatomtyper.cpp.o CMakeFiles/Core.dir/neighborperceiver.cpp.o CMakeFiles/Core.dir/residue.cpp.o CMakeFiles/Core.dir/ringperceiver.cpp.o CMakeFiles/Core.dir/secondarystructure.cpp.o CMakeFiles/Core.dir/slaterset.cpp.o CMakeFiles/Core.dir/slatersettools.cpp.o CMakeFiles/Core.dir/spacegroups.cpp.o CMakeFiles/Core.dir/symbolatomtyper.cpp.o CMakeFiles/Core.dir/unitcell.cpp.o CMakeFiles/Core.dir/variantmap.cpp.o CMakeFiles/Core.dir/version.cpp.o CMakeFiles/Core.dir/sharedmutex.cpp.o CMakeFiles/Core.dir/avospglib.cpp.o /usr/lib/x86_64-linux-gnu/libsymspg.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCore.so.1.99.0 ../../lib/libAvogadroCore.so.1 ../../lib/libAvogadroCore.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 6%] Built target Core make -f avogadro/calc/CMakeFiles/Calc.dir/build.make avogadro/calc/CMakeFiles/Calc.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc/CMakeFiles/Calc.dir/DependInfo.cmake "--color=" make -f avogadro/io/CMakeFiles/IO.dir/build.make avogadro/io/CMakeFiles/IO.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io/CMakeFiles/IO.dir/DependInfo.cmake "--color=" make -f avogadro/rendering/CMakeFiles/Rendering.dir/build.make avogadro/rendering/CMakeFiles/Rendering.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/calc/CMakeFiles/Calc.dir/build.make avogadro/calc/CMakeFiles/Calc.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/io/CMakeFiles/IO.dir/build.make avogadro/io/CMakeFiles/IO.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 6%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_vs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f python/CMakeFiles/avogadrocorepython.dir/build.make python/CMakeFiles/avogadrocorepython.dir/depend [ 6%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arrow_vs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arrow_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/arrow_vs.h arrow_vs make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/python /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/python /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/python/CMakeFiles/avogadrocorepython.dir/DependInfo.cmake "--color=" [ 6%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/chargemanager.cpp.o [ 7%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/chargemodel.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc && /usr/bin/c++ -DCalc_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro 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/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc && /usr/bin/c++ -DCalc_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/chargemanager.cpp.o -MF CMakeFiles/Calc.dir/chargemanager.cpp.o.d -o CMakeFiles/Calc.dir/chargemanager.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemanager.cpp [ 7%] Building CXX object avogadro/io/CMakeFiles/IO.dir/cjsonformat.cpp.o [ 7%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylinders_vs.glsl make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 7%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylinders_fs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc && /usr/bin/c++ -DCalc_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/defaultmodel.cpp.o -MF CMakeFiles/Calc.dir/defaultmodel.cpp.o.d -o CMakeFiles/Calc.dir/defaultmodel.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.cpp make -f python/CMakeFiles/avogadrocorepython.dir/build.make python/CMakeFiles/avogadrocorepython.dir/build [ 7%] Building CXX object avogadro/io/CMakeFiles/IO.dir/cmlformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylinders_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/cylinders_fs.h cylinders_fs cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cjsonformat.cpp.o -MF CMakeFiles/IO.dir/cjsonformat.cpp.o.d -o CMakeFiles/IO.dir/cjsonformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cjsonformat.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylinders_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/cylinders_vs.h cylinders_vs make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 7%] Building 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-isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cmlformat.cpp.o -MF CMakeFiles/IO.dir/cmlformat.cpp.o.d -o CMakeFiles/IO.dir/cmlformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cmlformat.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedline_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/dashedline_fs.h dashedline_fs [ 7%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedline_vs.glsl [ 7%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc && /usr/bin/c++ -DCalc_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o -MF CMakeFiles/Calc.dir/energycalculator.cpp.o.d -o CMakeFiles/Calc.dir/energycalculator.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/energycalculator.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cmsgpackformat.cpp.o -MF CMakeFiles/IO.dir/cmsgpackformat.cpp.o.d -o CMakeFiles/IO.dir/cmsgpackformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedline_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/dashedline_vs.h dashedline_vs [ 7%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc && /usr/bin/c++ -DCalc_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o -MF CMakeFiles/Calc.dir/energymanager.cpp.o.d -o CMakeFiles/Calc.dir/energymanager.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/energymanager.cpp [ 7%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc && /usr/bin/c++ -DCalc_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o -MF CMakeFiles/Calc.dir/lennardjones.cpp.o.d -o CMakeFiles/Calc.dir/lennardjones.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp [ 8%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestrip_fs.glsl [ 8%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestrip_vs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestrip_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/linestrip_fs.h linestrip_fs cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestrip_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/linestrip_vs.h linestrip_vs [ 8%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/mesh_fs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/mesh_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/mesh_fs.h mesh_fs [ 8%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/mesh_opaque_fs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/mesh_opaque_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/mesh_opaque_fs.h mesh_opaque_fs [ 8%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/mesh_vs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/mesh_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/mesh_vs.h mesh_vs [ 9%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solid_first_fs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solid_first_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/solid_first_fs.h solid_first_fs [ 9%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solid_vs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solid_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/solid_vs.h solid_vs [ 10%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_fs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs [ 10%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_vs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs [ 10%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_fs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs [ 10%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_fs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs [ 10%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_vs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs [ 10%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_vs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs [ 10%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheres_fs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheres_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/spheres_fs.h spheres_fs [ 10%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheres_vs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheres_vs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/spheres_vs.h spheres_vs [ 10%] Encoding /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_fs.glsl cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && ../../bin/encodefile /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_fs.glsl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering/CMakeFiles/Rendering.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/rendering/CMakeFiles/Rendering.dir/build.make avogadro/rendering/CMakeFiles/Rendering.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 10%] Building CXX object avogadro/io/CMakeFiles/IO.dir/dcdformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/dcdformat.cpp.o -MF CMakeFiles/IO.dir/dcdformat.cpp.o.d -o CMakeFiles/IO.dir/dcdformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/dcdformat.cpp [ 10%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o -MF CMakeFiles/Rendering.dir/arcsector.cpp.o.d -o CMakeFiles/Rendering.dir/arcsector.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp [ 10%] Building CXX object avogadro/io/CMakeFiles/IO.dir/fileformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/fileformat.cpp.o -MF CMakeFiles/IO.dir/fileformat.cpp.o.d -o CMakeFiles/IO.dir/fileformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.cpp [ 11%] Building CXX object avogadro/io/CMakeFiles/IO.dir/fileformatmanager.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/fileformatmanager.cpp.o -MF CMakeFiles/IO.dir/fileformatmanager.cpp.o.d -o CMakeFiles/IO.dir/fileformatmanager.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.cpp [ 11%] Building CXX object avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o -MF CMakeFiles/IO.dir/gromacsformat.cpp.o.d -o CMakeFiles/IO.dir/gromacsformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/gromacsformat.cpp [ 11%] Building CXX object avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o -MF CMakeFiles/IO.dir/mdlformat.cpp.o.d -o CMakeFiles/IO.dir/mdlformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/mdlformat.cpp [ 11%] Building CXX object avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o -MF CMakeFiles/IO.dir/vaspformat.cpp.o.d -o CMakeFiles/IO.dir/vaspformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/vaspformat.cpp [ 12%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o -MF CMakeFiles/Rendering.dir/arcstrip.cpp.o.d -o CMakeFiles/Rendering.dir/arcstrip.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp [ 12%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arrowgeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arrowgeometry.cpp.o -MF CMakeFiles/Rendering.dir/arrowgeometry.cpp.o.d -o CMakeFiles/Rendering.dir/arrowgeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.cpp [ 12%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/beziergeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/beziergeometry.cpp.o -MF CMakeFiles/Rendering.dir/beziergeometry.cpp.o.d -o CMakeFiles/Rendering.dir/beziergeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.cpp [ 12%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/bufferobject.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/bufferobject.cpp.o -MF CMakeFiles/Rendering.dir/bufferobject.cpp.o.d -o CMakeFiles/Rendering.dir/bufferobject.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.cpp [ 13%] Linking CXX shared library ../../lib/libAvogadroCalc.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc && /usr/bin/cmake -E cmake_link_script CMakeFiles/Calc.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libAvogadroCalc.so.1 -o ../../lib/libAvogadroCalc.so.1.99.0 CMakeFiles/Calc.dir/chargemodel.cpp.o CMakeFiles/Calc.dir/chargemanager.cpp.o CMakeFiles/Calc.dir/defaultmodel.cpp.o CMakeFiles/Calc.dir/energycalculator.cpp.o CMakeFiles/Calc.dir/energymanager.cpp.o CMakeFiles/Calc.dir/lennardjones.cpp.o ../../lib/libAvogadroCore.so.1.99.0 cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCalc.so.1.99.0 ../../lib/libAvogadroCalc.so.1 ../../lib/libAvogadroCalc.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 13%] Built target Calc [ 13%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o -MF CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.cpp [ 13%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -MF CMakeFiles/Rendering.dir/cartoongeometry.cpp.o.d -o CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp [ 13%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o -MF CMakeFiles/Rendering.dir/camera.cpp.o.d -o CMakeFiles/Rendering.dir/camera.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/camera.cpp [ 13%] Building CXX object avogadro/io/CMakeFiles/IO.dir/pdbformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/pdbformat.cpp.o -MF CMakeFiles/IO.dir/pdbformat.cpp.o.d -o CMakeFiles/IO.dir/pdbformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/pdbformat.cpp [ 13%] Building CXX object avogadro/io/CMakeFiles/IO.dir/xyzformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/xyzformat.cpp.o -MF CMakeFiles/IO.dir/xyzformat.cpp.o.d -o CMakeFiles/IO.dir/xyzformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/xyzformat.cpp [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o -MF CMakeFiles/Rendering.dir/curvegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/curvegeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp [ 14%] Building CXX object avogadro/io/CMakeFiles/IO.dir/trrformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/trrformat.cpp.o -MF CMakeFiles/IO.dir/trrformat.cpp.o.d -o CMakeFiles/IO.dir/trrformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/trrformat.cpp [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o -MF CMakeFiles/Rendering.dir/cylindergeometry.cpp.o.d -o CMakeFiles/Rendering.dir/cylindergeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o -MF CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.cpp [ 15%] Building CXX object avogadro/io/CMakeFiles/IO.dir/turbomoleformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/turbomoleformat.cpp.o -MF CMakeFiles/IO.dir/turbomoleformat.cpp.o.d -o CMakeFiles/IO.dir/turbomoleformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/turbomoleformat.cpp [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/drawable.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/drawable.cpp.o -MF CMakeFiles/Rendering.dir/drawable.cpp.o.d -o CMakeFiles/Rendering.dir/drawable.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.cpp [ 15%] Building CXX object avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o -MF CMakeFiles/IO.dir/lammpsformat.cpp.o.d -o CMakeFiles/IO.dir/lammpsformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/geometrynode.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/geometrynode.cpp.o -MF CMakeFiles/Rendering.dir/geometrynode.cpp.o.d -o CMakeFiles/Rendering.dir/geometrynode.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.cpp [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/geometryvisitor.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/geometryvisitor.cpp.o -MF CMakeFiles/Rendering.dir/geometryvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/geometryvisitor.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.cpp [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/groupnode.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/groupnode.cpp.o -MF CMakeFiles/Rendering.dir/groupnode.cpp.o.d -o CMakeFiles/Rendering.dir/groupnode.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.cpp [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/glrenderer.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/glrenderer.cpp.o -MF CMakeFiles/Rendering.dir/glrenderer.cpp.o.d -o CMakeFiles/Rendering.dir/glrenderer.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.cpp [ 16%] Building CXX object avogadro/io/CMakeFiles/IO.dir/hdf5dataformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/c++ -DAVO_USE_HDF5 -DH5_USE_110_API -DIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/struct -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/hdf5/serial -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/hdf5dataformat.cpp.o -MF CMakeFiles/IO.dir/hdf5dataformat.cpp.o.d -o CMakeFiles/IO.dir/hdf5dataformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.cpp [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/glrendervisitor.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/glrendervisitor.cpp.o -MF CMakeFiles/Rendering.dir/glrendervisitor.cpp.o.d -o CMakeFiles/Rendering.dir/glrendervisitor.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.cpp [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o -MF CMakeFiles/Rendering.dir/linestripgeometry.cpp.o.d -o CMakeFiles/Rendering.dir/linestripgeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.cpp [ 17%] Linking CXX shared module ../lib/avogadro/core.cpython-311-x86_64-linux-gnu.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadrocorepython.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -flto -shared -o ../lib/avogadro/core.cpython-311-x86_64-linux-gnu.so CMakeFiles/avogadrocorepython.dir/core.cpp.o ../lib/libAvogadroCore.so.1.99.0 [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o -MF CMakeFiles/Rendering.dir/meshgeometry.cpp.o.d -o CMakeFiles/Rendering.dir/meshgeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o -MF CMakeFiles/Rendering.dir/node.cpp.o.d -o CMakeFiles/Rendering.dir/node.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.cpp [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o -MF CMakeFiles/Rendering.dir/plyvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/plyvisitor.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.cpp [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -MF CMakeFiles/Rendering.dir/povrayvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.cpp [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o -MF CMakeFiles/Rendering.dir/quad.cpp.o.d -o CMakeFiles/Rendering.dir/quad.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o -MF CMakeFiles/Rendering.dir/quadoutline.cpp.o.d -o CMakeFiles/Rendering.dir/quadoutline.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o -MF CMakeFiles/Rendering.dir/scene.cpp.o.d -o CMakeFiles/Rendering.dir/scene.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.cpp [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o -MF CMakeFiles/Rendering.dir/shader.cpp.o.d -o CMakeFiles/Rendering.dir/shader.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shader.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/shaderprogram.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/shaderprogram.cpp.o -MF CMakeFiles/Rendering.dir/shaderprogram.cpp.o.d -o CMakeFiles/Rendering.dir/shaderprogram.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/solidpipeline.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/solidpipeline.cpp.o -MF CMakeFiles/Rendering.dir/solidpipeline.cpp.o.d -o CMakeFiles/Rendering.dir/solidpipeline.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/spheregeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/spheregeometry.cpp.o -MF CMakeFiles/Rendering.dir/spheregeometry.cpp.o.d -o CMakeFiles/Rendering.dir/spheregeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabel2d.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textlabel2d.cpp.o -MF CMakeFiles/Rendering.dir/textlabel2d.cpp.o.d -o CMakeFiles/Rendering.dir/textlabel2d.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabel3d.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textlabel3d.cpp.o -MF CMakeFiles/Rendering.dir/textlabel3d.cpp.o.d -o CMakeFiles/Rendering.dir/textlabel3d.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.cpp [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabelbase.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textlabelbase.cpp.o -MF CMakeFiles/Rendering.dir/textlabelbase.cpp.o.d -o CMakeFiles/Rendering.dir/textlabelbase.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textproperties.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textproperties.cpp.o -MF CMakeFiles/Rendering.dir/textproperties.cpp.o.d -o CMakeFiles/Rendering.dir/textproperties.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o -MF CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o.d -o CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/texture2d.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/texture2d.cpp.o -MF CMakeFiles/Rendering.dir/texture2d.cpp.o.d -o CMakeFiles/Rendering.dir/texture2d.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/texture2d.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/transformnode.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/transformnode.cpp.o -MF CMakeFiles/Rendering.dir/transformnode.cpp.o.d -o CMakeFiles/Rendering.dir/transformnode.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/transformnode.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/visitor.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/visitor.cpp.o -MF CMakeFiles/Rendering.dir/visitor.cpp.o.d -o CMakeFiles/Rendering.dir/visitor.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/volumegeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/volumegeometry.cpp.o -MF CMakeFiles/Rendering.dir/volumegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/volumegeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.cpp [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o -MF CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.cpp [ 21%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/c++ -DRendering_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -MF CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o.d -o CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.cpp [ 21%] Linking CXX shared library ../../lib/libAvogadroIO.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/cmake -E cmake_link_script CMakeFiles/IO.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libAvogadroIO.so.1 -o ../../lib/libAvogadroIO.so.1.99.0 CMakeFiles/IO.dir/cjsonformat.cpp.o CMakeFiles/IO.dir/cmlformat.cpp.o CMakeFiles/IO.dir/cmsgpackformat.cpp.o CMakeFiles/IO.dir/dcdformat.cpp.o CMakeFiles/IO.dir/fileformat.cpp.o CMakeFiles/IO.dir/fileformatmanager.cpp.o CMakeFiles/IO.dir/gromacsformat.cpp.o CMakeFiles/IO.dir/mdlformat.cpp.o CMakeFiles/IO.dir/vaspformat.cpp.o CMakeFiles/IO.dir/pdbformat.cpp.o CMakeFiles/IO.dir/xyzformat.cpp.o CMakeFiles/IO.dir/trrformat.cpp.o CMakeFiles/IO.dir/turbomoleformat.cpp.o CMakeFiles/IO.dir/lammpsformat.cpp.o CMakeFiles/IO.dir/hdf5dataformat.cpp.o /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so ../../lib/libAvogadroCore.so.1.99.0 ../../thirdparty/libstruct.a ../../thirdparty/libpugixml.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroIO.so.1 ../../lib/libAvogadroIO.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 21%] Built target IO make -f avogadro/quantumio/CMakeFiles/QuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/QuantumIO.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio/CMakeFiles/QuantumIO.dir/DependInfo.cmake "--color=" make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/command /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/command /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/quantumio/CMakeFiles/QuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/QuantumIO.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/command /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu 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CMakeFiles/QuantumIO.dir/genericoutput.cpp.o.d -o CMakeFiles/QuantumIO.dir/genericoutput.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/genericoutput.cpp make -f avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.h" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/insertfragmentdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.h" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentatom.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentbond.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.h" AutoGen: 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"SRC:/avogadro/qtgui/generichighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/insertfragmentdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/avogadroqtguiexport.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/sortfiltertreeproxymodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/backgroundfileformat.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/backgroundfileformat.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/colorbutton.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/elementtranslator.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/elementtranslator.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/filebrowsewidget.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/fileformatdialog.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/generichighlighter.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/insertfragmentdialog.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/containerwidget.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacescript.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacewidget.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacewidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/extensionplugin.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/customelementdialog.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/jsonwidget.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/layermodel.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/meshgenerator.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio && /usr/bin/c++ -DQuantumIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o -MF CMakeFiles/QuantumIO.dir/molden.cpp.o.d -o CMakeFiles/QuantumIO.dir/molden.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/molden.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/molecule.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/moleculemodel.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio && /usr/bin/c++ -DQuantumIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o -MF CMakeFiles/QuantumIO.dir/mopacaux.cpp.o.d -o CMakeFiles/QuantumIO.dir/mopacaux.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictablescene_p.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictableview.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/periodictableview.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/pythonscript.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/rwmolecule.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sceneplugin.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scenepluginmodel.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scriptloader.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sortfiltertreeproxymodel.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/toolplugin.h" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.cpp" /usr/lib/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 22%] Built target QtGui_autogen make -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 22%] Generating ui_insertfragmentdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/ui_insertfragmentdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.ui [ 23%] Generating qrc_qtgui.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/lib/qt5/bin/rcc --name qtgui --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/qrc_qtgui.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/qtgui.qrc [ 23%] Generating ui_customelementdialog.h [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio && /usr/bin/c++ -DQuantumIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -MF CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o.d -o CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/ui_customelementdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/CMakeFiles/QtGui.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/mocs_compilation.cpp [ 23%] Linking CXX executable ../../bin/avocjsontocml cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avocjsontocml.dir/link.txt --verbose=1 [ 23%] Linking CXX executable ../../bin/avobabel cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avobabel.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -o ../../bin/avocjsontocml ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed CMakeFiles/avobabel.dir/avobabel.cpp.o -o ../../bin/avobabel ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 [ 24%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio && /usr/bin/c++ -DQuantumIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o -MF CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o.d -o CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 24%] Built target avocjsontocml [ 24%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio && /usr/bin/c++ -DQuantumIO_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o -MF CMakeFiles/QuantumIO.dir/orca.cpp.o.d -o CMakeFiles/QuantumIO.dir/orca.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 24%] Built target avobabel [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o -MF CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o.d -o CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/backgroundfileformat.cpp [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/colorbutton.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/colorbutton.cpp.o -MF CMakeFiles/QtGui.dir/colorbutton.cpp.o.d -o CMakeFiles/QtGui.dir/colorbutton.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.cpp [ 24%] Linking CXX shared library ../../lib/libAvogadroRendering.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/cmake -E cmake_link_script CMakeFiles/Rendering.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libAvogadroRendering.so.1 -o ../../lib/libAvogadroRendering.so.1.99.0 CMakeFiles/Rendering.dir/arcsector.cpp.o CMakeFiles/Rendering.dir/arcstrip.cpp.o CMakeFiles/Rendering.dir/arrowgeometry.cpp.o CMakeFiles/Rendering.dir/beziergeometry.cpp.o CMakeFiles/Rendering.dir/bufferobject.cpp.o CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o CMakeFiles/Rendering.dir/cartoongeometry.cpp.o CMakeFiles/Rendering.dir/camera.cpp.o CMakeFiles/Rendering.dir/curvegeometry.cpp.o CMakeFiles/Rendering.dir/cylindergeometry.cpp.o CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o CMakeFiles/Rendering.dir/drawable.cpp.o CMakeFiles/Rendering.dir/geometrynode.cpp.o CMakeFiles/Rendering.dir/geometryvisitor.cpp.o CMakeFiles/Rendering.dir/groupnode.cpp.o CMakeFiles/Rendering.dir/glrenderer.cpp.o CMakeFiles/Rendering.dir/glrendervisitor.cpp.o CMakeFiles/Rendering.dir/linestripgeometry.cpp.o CMakeFiles/Rendering.dir/meshgeometry.cpp.o CMakeFiles/Rendering.dir/node.cpp.o CMakeFiles/Rendering.dir/plyvisitor.cpp.o CMakeFiles/Rendering.dir/povrayvisitor.cpp.o CMakeFiles/Rendering.dir/quad.cpp.o CMakeFiles/Rendering.dir/quadoutline.cpp.o CMakeFiles/Rendering.dir/scene.cpp.o CMakeFiles/Rendering.dir/shader.cpp.o CMakeFiles/Rendering.dir/shaderprogram.cpp.o CMakeFiles/Rendering.dir/solidpipeline.cpp.o CMakeFiles/Rendering.dir/spheregeometry.cpp.o CMakeFiles/Rendering.dir/textlabel2d.cpp.o CMakeFiles/Rendering.dir/textlabel3d.cpp.o CMakeFiles/Rendering.dir/textlabelbase.cpp.o CMakeFiles/Rendering.dir/textproperties.cpp.o CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o CMakeFiles/Rendering.dir/texture2d.cpp.o CMakeFiles/Rendering.dir/transformnode.cpp.o CMakeFiles/Rendering.dir/visitor.cpp.o CMakeFiles/Rendering.dir/volumegeometry.cpp.o CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o ../../lib/libAvogadroCore.so.1.99.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libOpenGL.so [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/containerwidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/containerwidget.cpp.o -MF CMakeFiles/QtGui.dir/containerwidget.cpp.o.d -o CMakeFiles/QtGui.dir/containerwidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.cpp [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/customelementdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/customelementdialog.cpp.o -MF CMakeFiles/QtGui.dir/customelementdialog.cpp.o.d -o CMakeFiles/QtGui.dir/customelementdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/python && /usr/bin/strip /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/lib/avogadro/core.cpython-311-x86_64-linux-gnu.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 24%] Built target avogadrocorepython [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/elementdetail_p.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/elementdetail_p.cpp.o -MF CMakeFiles/QtGui.dir/elementdetail_p.cpp.o.d -o CMakeFiles/QtGui.dir/elementdetail_p.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/elementdetail_p.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroRendering.so.1.99.0 ../../lib/libAvogadroRendering.so.1 ../../lib/libAvogadroRendering.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 25%] Built target Rendering [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/elementitem_p.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem 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-I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/extensionplugin.cpp.o -MF CMakeFiles/QtGui.dir/extensionplugin.cpp.o.d -o CMakeFiles/QtGui.dir/extensionplugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.cpp [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro 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avogadro/qtgui/CMakeFiles/QtGui.dir/fileformatdialog.cpp.o -MF CMakeFiles/QtGui.dir/fileformatdialog.cpp.o.d -o CMakeFiles/QtGui.dir/fileformatdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.cpp [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/generichighlighter.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu 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CMakeFiles/QtGui.dir/generichighlighter.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.cpp [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/hydrogentools.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/hydrogentools.cpp.o -MF CMakeFiles/QtGui.dir/hydrogentools.cpp.o.d -o CMakeFiles/QtGui.dir/hydrogentools.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.cpp [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o -MF CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o.d -o CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.cpp [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/interfacescript.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem 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-DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/interfacewidget.cpp.o -MF CMakeFiles/QtGui.dir/interfacewidget.cpp.o.d -o CMakeFiles/QtGui.dir/interfacewidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacewidget.cpp [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/jsonwidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/jsonwidget.cpp.o -MF CMakeFiles/QtGui.dir/jsonwidget.cpp.o.d -o CMakeFiles/QtGui.dir/jsonwidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.cpp [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/layermodel.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro 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CMakeFiles/QtGui.dir/rwlayermanager.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.cpp [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/meshgenerator.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/meshgenerator.cpp.o -MF CMakeFiles/QtGui.dir/meshgenerator.cpp.o.d -o CMakeFiles/QtGui.dir/meshgenerator.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.cpp [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/molecule.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/molecule.cpp.o -MF CMakeFiles/QtGui.dir/molecule.cpp.o.d -o CMakeFiles/QtGui.dir/molecule.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.cpp [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/moleculemodel.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/moleculemodel.cpp.o -MF CMakeFiles/QtGui.dir/moleculemodel.cpp.o.d -o CMakeFiles/QtGui.dir/moleculemodel.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.cpp [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/multiviewwidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/multiviewwidget.cpp.o -MF CMakeFiles/QtGui.dir/multiviewwidget.cpp.o.d -o CMakeFiles/QtGui.dir/multiviewwidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.cpp [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro 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-std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o -MF CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o.d -o CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.cpp [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/periodictableview.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 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avogadro/qtgui/CMakeFiles/QtGui.dir/periodictableview.cpp.o -MF CMakeFiles/QtGui.dir/periodictableview.cpp.o.d -o CMakeFiles/QtGui.dir/periodictableview.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/periodictableview.cpp [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu 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CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.cpp [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/pythonscript.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/pythonscript.cpp.o -MF CMakeFiles/QtGui.dir/pythonscript.cpp.o.d -o CMakeFiles/QtGui.dir/pythonscript.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.cpp [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/rwmolecule.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/rwmolecule.cpp.o -MF CMakeFiles/QtGui.dir/rwmolecule.cpp.o.d -o CMakeFiles/QtGui.dir/rwmolecule.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.cpp [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/sceneplugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/sceneplugin.cpp.o -MF CMakeFiles/QtGui.dir/sceneplugin.cpp.o.d -o CMakeFiles/QtGui.dir/sceneplugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.cpp [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o -MF CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o.d -o CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.cpp [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/scriptloader.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/scriptloader.cpp.o -MF CMakeFiles/QtGui.dir/scriptloader.cpp.o.d -o CMakeFiles/QtGui.dir/scriptloader.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.cpp [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o -MF CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o.d -o CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.cpp [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/toolplugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/toolplugin.cpp.o -MF CMakeFiles/QtGui.dir/toolplugin.cpp.o.d -o CMakeFiles/QtGui.dir/toolplugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.cpp [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/utilities.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/utilities.cpp.o -MF CMakeFiles/QtGui.dir/utilities.cpp.o.d -o CMakeFiles/QtGui.dir/utilities.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/utilities.cpp [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/viewfactory.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/viewfactory.cpp.o -MF CMakeFiles/QtGui.dir/viewfactory.cpp.o.d -o CMakeFiles/QtGui.dir/viewfactory.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/viewfactory.cpp [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/c++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib/x86_64-linux-gnu\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/QtGui_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o -MF CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o.d -o CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui/qrc_qtgui.cpp [ 29%] Linking CXX shared library ../../lib/libAvogadroQuantumIO.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantumIO.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libAvogadroQuantumIO.so.1 -o ../../lib/libAvogadroQuantumIO.so.1.99.0 CMakeFiles/QuantumIO.dir/gamessus.cpp.o CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o CMakeFiles/QuantumIO.dir/genericoutput.cpp.o CMakeFiles/QuantumIO.dir/molden.cpp.o CMakeFiles/QuantumIO.dir/mopacaux.cpp.o CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o CMakeFiles/QuantumIO.dir/orca.cpp.o ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQuantumIO.so.1.99.0 ../../lib/libAvogadroQuantumIO.so.1 ../../lib/libAvogadroQuantumIO.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 29%] Built target QuantumIO make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make -f python/CMakeFiles/avogadroiopython.dir/build.make python/CMakeFiles/avogadroiopython.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/command /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/command /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/python /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/python /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/python/CMakeFiles/avogadroiopython.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f python/CMakeFiles/avogadroiopython.dir/build.make python/CMakeFiles/avogadroiopython.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 30%] Building CXX object avogadro/command/CMakeFiles/qube.dir/qube.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/command && /usr/bin/c++ -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/command/CMakeFiles/qube.dir/qube.cpp.o -MF CMakeFiles/qube.dir/qube.cpp.o.d -o CMakeFiles/qube.dir/qube.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/command/qube.cpp [ 30%] Building CXX object python/CMakeFiles/avogadroiopython.dir/io.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/python && /usr/bin/c++ -Davogadroiopython_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -isystem /usr/include/python3.11 -isystem /usr/include/eigen3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT python/CMakeFiles/avogadroiopython.dir/io.cpp.o -MF CMakeFiles/avogadroiopython.dir/io.cpp.o.d -o CMakeFiles/avogadroiopython.dir/io.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/python/io.cpp [ 30%] Linking CXX executable ../../bin/qube cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed CMakeFiles/qube.dir/qube.cpp.o -o ../../bin/qube ../../lib/libAvogadroQuantumIO.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 30%] Built target qube [ 31%] Linking CXX shared library ../../lib/libAvogadroQtGui.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtGui.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libAvogadroQtGui.so.1 -o ../../lib/libAvogadroQtGui.so.1.99.0 CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o CMakeFiles/QtGui.dir/colorbutton.cpp.o CMakeFiles/QtGui.dir/containerwidget.cpp.o CMakeFiles/QtGui.dir/customelementdialog.cpp.o CMakeFiles/QtGui.dir/elementdetail_p.cpp.o CMakeFiles/QtGui.dir/elementitem_p.cpp.o CMakeFiles/QtGui.dir/elementtranslator.cpp.o CMakeFiles/QtGui.dir/extensionplugin.cpp.o CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o CMakeFiles/QtGui.dir/fileformatdialog.cpp.o CMakeFiles/QtGui.dir/generichighlighter.cpp.o CMakeFiles/QtGui.dir/hydrogentools.cpp.o CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o CMakeFiles/QtGui.dir/interfacescript.cpp.o CMakeFiles/QtGui.dir/interfacewidget.cpp.o CMakeFiles/QtGui.dir/jsonwidget.cpp.o CMakeFiles/QtGui.dir/layermodel.cpp.o CMakeFiles/QtGui.dir/rwlayermanager.cpp.o CMakeFiles/QtGui.dir/meshgenerator.cpp.o CMakeFiles/QtGui.dir/molecule.cpp.o CMakeFiles/QtGui.dir/moleculemodel.cpp.o CMakeFiles/QtGui.dir/multiviewwidget.cpp.o CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o CMakeFiles/QtGui.dir/periodictableview.cpp.o CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o CMakeFiles/QtGui.dir/pythonscript.cpp.o CMakeFiles/QtGui.dir/rwmolecule.cpp.o CMakeFiles/QtGui.dir/sceneplugin.cpp.o CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o CMakeFiles/QtGui.dir/scriptloader.cpp.o CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/QtGui.dir/toolplugin.cpp.o CMakeFiles/QtGui.dir/utilities.cpp.o CMakeFiles/QtGui.dir/viewfactory.cpp.o CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroQtGui.so.1 ../../lib/libAvogadroQtGui.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target QtGui make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/depend make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/depend make[3]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 31%] Built target ApplyColors_autogen_timestamp_deps make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build make[3]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build make[3]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target QtOpenGL_autogen_timestamp_deps make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target MoleQueue_autogen_timestamp_deps [ 31%] Built target ThreeDMol_autogen_timestamp_deps [ 31%] Built target Bonding_autogen_timestamp_deps [ 31%] Built target Cartoons_autogen_timestamp_deps make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/depend [ 31%] Built target Centroid_autogen_timestamp_deps make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 31%] Linking CXX shared module ../lib/avogadro/io.cpython-311-x86_64-linux-gnu.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadroiopython.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -flto -shared -o ../lib/avogadro/io.cpython-311-x86_64-linux-gnu.so CMakeFiles/avogadroiopython.dir/io.cpp.o ../lib/libAvogadroQuantumIO.so.1.99.0 ../lib/libAvogadroIO.so.1.99.0 ../lib/libAvogadroCore.so.1.99.0 make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build make[3]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target ConfigurePython_autogen_timestamp_deps [ 31%] Built target CopyPaste_autogen_timestamp_deps [ 31%] Built target Crystal_autogen_timestamp_deps [ 31%] Built target CrystalScene_autogen_timestamp_deps make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 31%] Built target CustomElements_autogen_timestamp_deps make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build [ 31%] Built target FetchPDB_autogen_timestamp_deps make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build [ 31%] Built target Hydrogens_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target ImportPQR_autogen_timestamp_deps [ 31%] Built target Label_autogen_timestamp_deps make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/depend [ 31%] Built target NucleicInput_autogen_timestamp_deps make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target LineFormatInput_autogen_timestamp_deps [ 31%] Built target NetworkDatabases_autogen_timestamp_deps [ 31%] Built target LammpsInput_autogen_timestamp_deps [ 31%] Built target OpenBabel_autogen_timestamp_deps make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/depend [ 31%] Built target OpenMMInput_autogen_timestamp_deps [ 31%] Built target PLY_autogen_timestamp_deps make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target POVRay_autogen_timestamp_deps make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target PropertyTables_autogen_timestamp_deps [ 31%] Built target Select_autogen_timestamp_deps [ 31%] Built target SpaceGroup_autogen_timestamp_deps make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/depend [ 31%] Built target Vibrations_autogen_timestamp_deps make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target VRML_autogen_timestamp_deps make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target CoordinateEditor_autogen_timestamp_deps [ 31%] Built target Forcefield_autogen_timestamp_deps make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/depend [ 31%] Built target InsertFragment_autogen_timestamp_deps [ 31%] Built target MolecularProperties_autogen_timestamp_deps make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build make[3]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build [ 31%] Built target commands_autogen_timestamp_deps make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target ScriptFileFormats_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build make[3]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target Licorice_autogen_timestamp_deps [ 31%] Built target ScriptCharges_autogen_timestamp_deps [ 31%] Built target PluginDownloader_autogen_timestamp_deps [ 31%] Built target BallStick_autogen_timestamp_deps [ 31%] Built target CloseContacts_autogen_timestamp_deps [ 31%] Built target Force_autogen_timestamp_deps make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/depend [ 31%] Built target Meshes_autogen_timestamp_deps make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/depend make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target NonCovalent_autogen_timestamp_deps make[3]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 31%] Built target Wireframe_autogen_timestamp_deps make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/depend make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/depend [ 31%] Built target VanDerWaals_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 32%] Automatic MOC for target QtOpenGL make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 32%] Automatic MOC for target MoleQueue cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenInfo.json None make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Refreshing parse cache because it doesn't exist. [ 32%] Automatic MOC for target ThreeDMol AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json None make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build [ 33%] Automatic MOC for target ApplyColors make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json None make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/depend make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include [ 33%] Automatic MOC for target Centroid make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenInfo.json None make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtopengl/avogadroqtopenglexport.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.cpp" [ 33%] Automatic MOC for target Cartoons make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json None [ 33%] Automatic MOC for target Bonding AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/activeobjects.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/activeobjects.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/glwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json None AutoGen: Refreshing parse cache because it doesn't exist. make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color=" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.h" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/avogadromolequeueexport.h" make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.cpp" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.cpp" AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmol.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmol.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmoldialog.h AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" [ 33%] Automatic MOC for target Crystal AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.cpp" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json None AutoGen: Refreshing parse cache because it doesn't exist. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/batchjob.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/client.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/jsonrpcclient.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgenerator.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratordialog.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cartoons/cartoons.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons/cartoons.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratorwidget.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.h AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuewidget.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuemanager.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuedialog.h" /usr/lib/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/applycolors/applycolors.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors/applycolors.h [ 33%] Automatic MOC for target ConfigurePython cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/AutogenInfo.json None AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/centroid/centroid.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/centroid/centroid.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/CentroidPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/centroid/centroid.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid/centroid.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/CentroidPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/CentroidPlugin.cpp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/BondingPlugin.cpp" [ 34%] Automatic MOC for target CopyPaste [ 34%] Automatic MOC for target CrystalScene cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json None AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bonding/bonding.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding/bonding.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/BondingPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/BondingPlugin.cpp AutoGen: Refreshing parse cache because it doesn't exist. cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json None AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/condadialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepython.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/condadialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepythondialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepythondialog.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepython.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.cpp" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystal.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystal.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_condadialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/configurepython/condadialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_condadialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/condadialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/supercelldialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepython.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/configurepython/configurepython.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepython.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepython.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepythondialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/configurepython/configurepythondialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepythondialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepythondialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/volumescalingdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include/ConfigurePythonPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include/ConfigurePythonPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalPlugin.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/unitcelldialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/importcrystaldialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystalscene.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/copypaste/copypaste.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste/copypaste.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/timestamp [ 34%] Built target Cartoons_autogen make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp.d" [ 34%] Built target ThreeDMol_autogen make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/deps" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenUsed.txt" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepython.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/deps" [ 34%] Automatic MOC for target CustomElements cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json None AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/ParseCache.txt" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp.d" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenUsed.txt" make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/deps" [ 34%] Built target Bonding_autogen make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenUsed.txt" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp.d" AutoGen: Refreshing parse cache because it doesn't exist. cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/timestamp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/deps" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color=" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenUsed.txt" [ 34%] Built target QtOpenGL_autogen cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/timestamp [ 34%] Automatic MOC for target FetchPDB AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp.d" make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json None AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/deps" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenUsed.txt" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/customelements/customelements.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/customelements/customelements.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb/fetchpdb.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 34%] Built target Centroid_autogen [ 35%] Automatic MOC for target Hydrogens AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_condadialog.cpp.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json None [ 35%] Built target CopyPaste_autogen make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/deps" [ 35%] Automatic MOC for target ImportPQR cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json None AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenUsed.txt" [ 35%] Built target ApplyColors_autogen make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/timestamp AutoGen: Refreshing parse cache because it doesn't exist. make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 35%] Built target MoleQueue_autogen AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.cpp" make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include/ConfigurePythonPlugin.moc.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens/hydrogens.h make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/importpqr.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/importpqr.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrwidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrrequest.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepythondialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/deps" [ 35%] Automatic MOC for target Label cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 35%] Automatic MOC for target LammpsInput make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json None AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Refreshing parse cache because it doesn't exist. [ 35%] Automatic MOC for target NucleicInput AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp.d" [ 35%] Automatic MOC for target LineFormatInput AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.h" AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelPlugin.cpp" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json None AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/label.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelPlugin.cpp AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenUsed.txt" [ 35%] Built target ConfigurePython_autogen cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/timestamp make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/deps" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.cpp" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/timestamp AutoGen: Refreshing parse cache because it doesn't exist. make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinput.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertdna/insertdna.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdna.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp" [ 35%] Built target Crystal_autogen AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinput.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp.d" make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build [ 35%] Built target FetchPDB_autogen AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/deps" make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/timestamp make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/deps" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color=" [ 35%] Automatic MOC for target NetworkDatabases cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json None [ 35%] Built target CustomElements_autogen make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/DependInfo.cmake "--color=" AutoGen: Refreshing parse cache because it doesn't exist. make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build [ 35%] Built target CrystalScene_autogen make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/deps" make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.cpp" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color=" [ 35%] Automatic MOC for target OpenMMInput cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/timestamp [ 35%] Automatic MOC for target OpenBabel cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json None AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases/networkdatabases.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json None AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp.d" [ 35%] Automatic MOC for target PLY cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp.d" make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/deps" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp.d" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/ParseCache.txt" AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenUsed.txt" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/timestamp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/deps" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc.d" [ 35%] Built target Hydrogens_autogen AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp" make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/ParseCache.txt" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenUsed.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenUsed.txt" [ 36%] Automatic MOC for target POVRay cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json None AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/conformersearchdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/timestamp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/timestamp AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/conformersearchdialog.cpp" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/ply/ply.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/ply/ply.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLYPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ply/ply.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply/ply.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLYPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLYPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.cpp" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminput.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminputdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp AutoGen: Refreshing parse cache because it doesn't exist. [ 36%] Built target ImportPQR_autogen AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 36%] Built target LammpsInput_autogen [ 36%] Built target NucleicInput_autogen AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_conformersearchdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/conformersearchdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_conformersearchdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obforcefielddialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obprocess.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obprocess.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/openbabel.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/openbabel.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obfileformat.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/depend [ 36%] Automatic MOC for target PropertyTables make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json None AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRayPlugin.cpp" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/povray/povray.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray/povray.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRayPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRayPlugin.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/deps" [ 36%] Automatic MOC for target Select cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json None AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenUsed.txt" AutoGen: Refreshing parse cache because it doesn't exist. cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/timestamp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.cpp" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.cpp" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc.d" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenUsed.txt" [ 36%] Automatic MOC for target SpaceGroup AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertymodel.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertytables.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertytables.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertyview.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/timestamp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json None AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/SelectPlugin.cpp" [ 36%] Built target NetworkDatabases_autogen make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend [ 36%] Automatic MOC for target Vibrations AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/select/select.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select/select.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/SelectPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/SelectPlugin.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Refreshing parse cache because it doesn't exist. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 36%] Built target LineFormatInput_autogen AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp.d" make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp.d" [ 36%] Automatic MOC for target VRML make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup/spacegroup.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json None AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrations.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrations.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationmodel.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vibrations/vibrationdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrationdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrations.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vibrations/vibrations.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrations.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrations.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/include/VibrationsPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/include/VibrationsPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/deps" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/timestamp [ 36%] Automatic MOC for target CoordinateEditor cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json None AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRMLPlugin.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vrml/vrml.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml/vrml.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRMLPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRMLPlugin.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/deps" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp.d" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_conformersearchdialog.cpp.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/timestamp [ 36%] Built target POVRay_autogen make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/deps" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenUsed.txt" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/timestamp [ 36%] Built target PLY_autogen [ 36%] Built target Label_autogen make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build [ 36%] Built target OpenMMInput_autogen [ 36%] Automatic MOC for target Forcefield AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp.d" make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color=" [ 36%] Automatic MOC for target InsertFragment make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json None AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrations.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/include/VibrationsPlugin.moc.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/deps" [ 36%] Automatic MOC for target MolecularProperties make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/timestamp make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json None make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefield.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obmmenergy.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/scriptenergy.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/scriptenergy.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefield.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/deps" [ 36%] Automatic MOC for target commands AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc warning --------------- "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp" includes the moc file "obmmenergy.moc", but does not contain a Q_OBJECT, Q_GADGET, Q_NAMESPACE or Q_NAMESPACE_EXPORT macro. AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json None AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/ParseCache.txt" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/forcefield.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefielddialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.cpp" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/timestamp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.cpp" AutoGen: Refreshing parse cache because it doesn't exist. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularproperties.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp [ 36%] Built target SpaceGroup_autogen make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend [ 36%] Built target VRML_autogen AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc.d" make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/commandscripts/command.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts/command.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commandsPlugin.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 36%] Automatic MOC for target ScriptCharges AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/deps" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp.d" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json None cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 36%] Automatic MOC for target ScriptFileFormats AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrationdialog.cpp.d" AutoGen: Refreshing parse cache because it doesn't exist. cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json None AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/deps" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp.d" [ 36%] Built target CoordinateEditor_autogen AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/deps" make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/AutogenUsed.txt" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenUsed.txt" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/deps" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/timestamp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color=" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/timestamp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.cpp" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptcharges.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 36%] Automatic MOC for target PluginDownloader cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json None AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/deps" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp.d" [ 36%] Built target PropertyTables_autogen make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend [ 36%] Built target Select_autogen AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenUsed.txt" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/deps" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/timestamp make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color=" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenUsed.txt" [ 36%] Built target Vibrations_autogen AutoGen: Refreshing parse cache because it doesn't exist. cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/timestamp make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc.d" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/deps" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/deps" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build [ 36%] Built target OpenBabel_autogen AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenUsed.txt" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.cpp" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/timestamp AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/plugindownloader.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build [ 36%] Automatic MOC for target BallStick [ 36%] Built target InsertFragment_autogen make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 36%] Automatic MOC for target CloseContacts AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json None AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp.d" make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend [ 36%] Built target MolecularProperties_autogen [ 36%] Automatic MOC for target Force [ 36%] Built target commands_autogen make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json None AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp.d" AutoGen: Refreshing parse cache because it doesn't exist. make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick/ballandstick.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts/closecontacts.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:0: Note: No relevant classes found. No output generated. AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/deps" make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/timestamp [ 36%] Automatic MOC for target Meshes AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/deps" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/deps" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json None [ 36%] Automatic MOC for target Licorice AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json None cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/timestamp AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/ForcePlugin.cpp" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.cpp" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/force/force.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force/force.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/ForcePlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/ForcePlugin.cpp [ 36%] Automatic MOC for target NonCovalent cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include [ 36%] Automatic MOC for target VanDerWaals cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json None [ 36%] Built target Forcefield_autogen [ 36%] Built target ScriptCharges_autogen make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend AutoGen: Refreshing parse cache because it doesn't exist. [ 36%] Built target ScriptFileFormats_autogen make -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/depend AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/LicoricePlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/licorice/licorice.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice/licorice.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/LicoricePlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/LicoricePlugin.cpp AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/MeshesPlugin.cpp" make -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/depend AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/meshes/meshes.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/MeshesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/MeshesPlugin.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals/vanderwaals.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent/noncovalent.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp [ 36%] Automatic MOC for target Wireframe make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json None [ 36%] Generating ui_molequeuewidget.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/ui_molequeuewidget.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.ui make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include [ 36%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/mocs_compilation.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/WireframePlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/wireframe/wireframe.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe/wireframe.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/WireframePlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/WireframePlugin.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/deps" [ 37%] Generating ui_inputgeneratordialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/ui_inputgeneratordialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.ui AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenUsed.txt" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/deps" [ 37%] Generating ui_inputgeneratorwidget.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/ui_inputgeneratorwidget.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.ui AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp.d" [ 37%] Built target PluginDownloader_autogen AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/deps" make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc.d" [ 37%] Generating ui_molequeuedialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/ui_molequeuedialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.ui make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 37%] Built target Force_autogen cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/CMakeFiles/MoleQueue.dir/DependInfo.cmake "--color=" [ 37%] Generating ui_3dmoldialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmoldialog.ui make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color=" [ 37%] Built target BallStick_autogen cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp.d" make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build [ 37%] Generating ui_bondingdialog.h [ 37%] Built target Licorice_autogen make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 37%] Generating ui_chargedialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/ui_bondingdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding/bondingdialog.ui make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend [ 37%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ui_chargedialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors/chargedialog.ui AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/mocs_compilation.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color=" [ 38%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenUsed.txt" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/deps" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/deps" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/timestamp AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenUsed.txt" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 38%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp [ 38%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp [ 38%] Built target VanDerWaals_autogen [ 38%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp.d" make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/depend [ 38%] Built target CloseContacts_autogen [ 38%] Built target Wireframe_autogen make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/depend make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build [ 38%] Generating ui_configurepythondialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ui_configurepythondialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepythondialog.ui make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/deps" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/timestamp [ 39%] Building CXX object avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o [ 39%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/mocs_compilation.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp [ 39%] Generating ui_condadialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ui_condadialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/condadialog.ui make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/deps" [ 39%] Built target Meshes_autogen AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenUsed.txt" make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 39%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/mocs_compilation.cpp [ 39%] Built target NonCovalent_autogen [ 39%] Generating ui_volumescalingdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/volumescalingdialog.ui make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color=" [ 40%] Generating ui_importcrystaldialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/importcrystaldialog.ui make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 41%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o [ 41%] Generating ui_supercelldialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/ui_supercelldialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/supercelldialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp [ 41%] Generating ui_unitcelldialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/ui_unitcelldialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/unitcelldialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 41%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp [ 41%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o -MF CMakeFiles/Cartoons.dir/cartoons.cpp.o.d -o CMakeFiles/Cartoons.dir/cartoons.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons/cartoons.cpp [ 41%] Building CXX object avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/centroid.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/centroid.cpp.o -MF CMakeFiles/Centroid.dir/centroid.cpp.o.d -o CMakeFiles/Centroid.dir/centroid.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid/centroid.cpp [ 41%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmol.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmol.cpp [ 41%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o -MF CMakeFiles/CopyPaste.dir/copypaste.cpp.o.d -o CMakeFiles/CopyPaste.dir/copypaste.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste/copypaste.cpp [ 41%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o -MF CMakeFiles/Bonding.dir/bonding.cpp.o.d -o CMakeFiles/Bonding.dir/bonding.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding/bonding.cpp [ 41%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o -MF CMakeFiles/ApplyColors.dir/applycolors.cpp.o.d -o CMakeFiles/ApplyColors.dir/applycolors.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors/applycolors.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/python && /usr/bin/strip /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/lib/avogadro/io.cpython-311-x86_64-linux-gnu.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 42%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/condadialog.cpp.o [ 42%] Built target avogadroiopython make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/condadialog.cpp.o -MF CMakeFiles/ConfigurePython.dir/condadialog.cpp.o.d -o CMakeFiles/ConfigurePython.dir/condadialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/condadialog.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 43%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o cd 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-isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp [ 43%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -MF CMakeFiles/CrystalScene.dir/crystalscene.cpp.o.d -o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.cpp [ 43%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/batchjob.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/batchjob.cpp.o -MF CMakeFiles/MoleQueue.dir/batchjob.cpp.o.d -o CMakeFiles/MoleQueue.dir/batchjob.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.cpp [ 43%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o -MF CMakeFiles/CustomElements.dir/customelements.cpp.o.d -o CMakeFiles/CustomElements.dir/customelements.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/customelements/customelements.cpp [ 43%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro 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-std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmoldialog.cpp [ 43%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu 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-I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o -MF CMakeFiles/Crystal.dir/crystal.cpp.o.d -o CMakeFiles/Crystal.dir/crystal.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystal.cpp [ 44%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o -MF CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o.d -o CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.cpp [ 44%] Building CXX object avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/Centroid_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o -MF CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o.d -o CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid/CentroidPlugin.cpp [ 44%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o -MF CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o.d -o CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepythondialog.cpp [ 44%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp [ 44%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/Bonding_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -MF CMakeFiles/Bonding.dir/BondingPlugin.cpp.o.d -o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding/BondingPlugin.cpp [ 44%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp [ 44%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Centroid.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid && /usr/bin/cmake -P CMakeFiles/Centroid.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_link_script CMakeFiles/Centroid.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Centroid.a CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o CMakeFiles/Centroid.dir/centroid.cpp.o CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o [ 44%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Centroid.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Built target Centroid make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/glwidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/glwidget.cpp.o -MF CMakeFiles/QtOpenGL.dir/glwidget.cpp.o.d -o CMakeFiles/QtOpenGL.dir/glwidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.cpp [ 44%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp [ 44%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp [ 44%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o -MF CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o.d -o CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp [ 44%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CustomElements.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements && /usr/bin/cmake -P CMakeFiles/CustomElements.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_link_script CMakeFiles/CustomElements.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CustomElements.a CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o CMakeFiles/CustomElements.dir/customelements.cpp.o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CustomElements.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Built target CustomElements make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp [ 44%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Bonding.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding && /usr/bin/cmake -P CMakeFiles/Bonding.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bonding.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Bonding.a CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o CMakeFiles/Bonding.dir/bonding.cpp.o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o [ 44%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Bonding.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -MF CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o.d -o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb/fetchpdb.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Built target Bonding [ 44%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ThreeDMol.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol && /usr/bin/cmake -P CMakeFiles/ThreeDMol.dir/cmake_clean_target.cmake make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_link_script CMakeFiles/ThreeDMol.dir/link.txt --verbose=1 [ 44%] Generating ui_pqrwidget.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ui_pqrwidget.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrwidget.ui /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ThreeDMol.a CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ThreeDMol.a [ 44%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CopyPaste.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste && /usr/bin/cmake -P CMakeFiles/CopyPaste.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopyPaste.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CopyPaste.a CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o CMakeFiles/CopyPaste.dir/copypaste.cpp.o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o [ 44%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp [ 44%] Built target ThreeDMol make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Generating ui_insertdnadialog.h /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CopyPaste.a [ 44%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ApplyColors.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors && /usr/bin/cmake -P CMakeFiles/ApplyColors.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/ui_insertdnadialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdnadialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_link_script CMakeFiles/ApplyColors.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Built target CopyPaste make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ApplyColors.a CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o CMakeFiles/ApplyColors.dir/applycolors.cpp.o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend [ 44%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ApplyColors.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Built target ApplyColors [ 44%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Generating ui_lammpsinputdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'moreButton' is not a valid widget. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'previewText' is not a valid widget. cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp [ 44%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -MF CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o.d -o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp [ 44%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -MF CMakeFiles/Hydrogens.dir/hydrogens.cpp.o.d -o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens/hydrogens.cpp [ 44%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ConfigurePython.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython && /usr/bin/cmake -P CMakeFiles/ConfigurePython.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/configurepython && /usr/bin/cmake -E cmake_link_script CMakeFiles/ConfigurePython.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ConfigurePython.a CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o CMakeFiles/ConfigurePython.dir/condadialog.cpp.o CMakeFiles/ConfigurePython.dir/configurepython.cpp.o CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ConfigurePython.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Built target ConfigurePython make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Generating ui_lineformatinputdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/ui_lineformatinputdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 44%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp [ 45%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -MF CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o.d -o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/importcrystaldialog.cpp [ 46%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o -MF CMakeFiles/NucleicInput.dir/insertdna.cpp.o.d -o CMakeFiles/NucleicInput.dir/insertdna.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdna.cpp [ 47%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o -MF CMakeFiles/ImportPQR.dir/importpqr.cpp.o.d -o CMakeFiles/ImportPQR.dir/importpqr.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/importpqr.cpp [ 48%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp [ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cartoons.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons && /usr/bin/cmake -P CMakeFiles/Cartoons.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cartoons.dir/link.txt --verbose=1 [ 49%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o -MF CMakeFiles/Label.dir/label.cpp.o.d -o CMakeFiles/Label.dir/label.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.cpp [ 50%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cartoons.a CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o CMakeFiles/Cartoons.dir/cartoons.cpp.o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cartoons.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 50%] Built target Cartoons make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 50%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp [ 50%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CrystalScene.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/CrystalScene.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/CrystalScene.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CrystalScene.a CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CrystalScene.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 50%] Built target CrystalScene make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 50%] Generating ui_obforcefielddialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/ui_obforcefielddialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obforcefielddialog.ui [ 50%] Generating ui_conformersearchdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/ui_conformersearchdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 51%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp [ 51%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp [ 51%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o -MF CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o.d -o CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.cpp [ 51%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -MF CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases/networkdatabases.cpp [ 51%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl/QtOpenGL_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -MF CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o.d -o CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/qttextrenderstrategy.cpp [ 51%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o -MF CMakeFiles/Crystal.dir/supercelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/supercelldialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/supercelldialog.cpp [ 51%] Linking CXX static library ../../../lib/avogadro2/staticplugins/FetchPDB.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -P CMakeFiles/FetchPDB.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/FetchPDB.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/FetchPDB.a CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/FetchPDB.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 51%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o -MF CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o.d -o CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.cpp [ 51%] Built target FetchPDB make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 51%] Generating ui_openmminputdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/ui_openmminputdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminputdialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 51%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp [ 51%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o -MF CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o.d -o CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.cpp [ 51%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -MF CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o.d -o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp [ 51%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrwidget.cpp [ 51%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp [ 51%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Hydrogens.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens && /usr/bin/cmake -P CMakeFiles/Hydrogens.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_link_script CMakeFiles/Hydrogens.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Hydrogens.a CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Hydrogens.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 51%] Built target Hydrogens make -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/CMakeFiles/PLY.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 51%] Building CXX object avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/mocs_compilation.cpp [ 52%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp [ 52%] Linking CXX shared library ../../lib/libAvogadroQtOpenGL.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtOpenGL.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libAvogadroQtOpenGL.so.1 -o ../../lib/libAvogadroQtOpenGL.so.1.99.0 CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o CMakeFiles/QtOpenGL.dir/glwidget.cpp.o CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o ../../lib/libAvogadroRendering.so.1.99.0 ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 [ 52%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/Label_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o -MF CMakeFiles/Label.dir/LabelPlugin.cpp.o.d -o CMakeFiles/Label.dir/LabelPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelPlugin.cpp [ 52%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o -MF CMakeFiles/OpenBabel.dir/obcharges.cpp.o.d -o CMakeFiles/OpenBabel.dir/obcharges.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp [ 52%] Building CXX object avogadro/qtplugins/ply/CMakeFiles/PLY.dir/ply.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ply/CMakeFiles/PLY.dir/ply.cpp.o -MF CMakeFiles/PLY.dir/ply.cpp.o.d -o CMakeFiles/PLY.dir/ply.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply/ply.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtOpenGL.so.1.99.0 ../../lib/libAvogadroQtOpenGL.so.1 ../../lib/libAvogadroQtOpenGL.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Built target QtOpenGL make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -MF CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o.d -o 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avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp [ 52%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrrequest.cpp [ 52%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp [ 52%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp [ 52%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp [ 52%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o -MF CMakeFiles/POVRay.dir/povray.cpp.o.d -o CMakeFiles/POVRay.dir/povray.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray/povray.cpp [ 52%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -MF CMakeFiles/Crystal.dir/unitcelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/unitcelldialog.cpp [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NetworkDatabases.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -P CMakeFiles/NetworkDatabases.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_link_script CMakeFiles/NetworkDatabases.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NetworkDatabases.a CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NetworkDatabases.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Built target NetworkDatabases make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Label.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/Label.dir/cmake_clean_target.cmake make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/Label.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Label.a CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o CMakeFiles/Label.dir/label.cpp.o CMakeFiles/Label.dir/LabelPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Label.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Built target Label make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Built target ResetView_autogen_timestamp_deps make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LineFormatInput.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -P CMakeFiles/LineFormatInput.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LineFormatInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LineFormatInput.a CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LineFormatInput.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Built target LineFormatInput make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Built target Selection_autogen_timestamp_deps make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp [ 52%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.cpp [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NucleicInput.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna && /usr/bin/cmake -P CMakeFiles/NucleicInput.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_link_script CMakeFiles/NucleicInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NucleicInput.a CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o CMakeFiles/NucleicInput.dir/insertdna.cpp.o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NucleicInput.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Built target NucleicInput make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Built target Surfaces_autogen_timestamp_deps make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Built target TemplateTool_autogen_timestamp_deps make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Generating ui_vibrationdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/ui_vibrationdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationdialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 52%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/mocs_compilation.cpp [ 52%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -MF CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o.d -o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup/spacegroup.cpp [ 52%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -MF CMakeFiles/OpenBabel.dir/obfileformat.cpp.o.d -o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obfileformat.cpp [ 52%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.cpp [ 53%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o -MF CMakeFiles/Select.dir/select.cpp.o.d -o CMakeFiles/Select.dir/select.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select/select.cpp [ 53%] Building CXX object avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLYPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLY_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLYPlugin.cpp.o -MF CMakeFiles/PLY.dir/PLYPlugin.cpp.o.d -o CMakeFiles/PLY.dir/PLYPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply/PLYPlugin.cpp [ 53%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp [ 53%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRay_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -MF CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o.d -o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray/POVRayPlugin.cpp [ 53%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminput.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminput.cpp [ 53%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LammpsInput.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -P CMakeFiles/LammpsInput.dir/cmake_clean_target.cmake [ 53%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o -MF CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o.d -o CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationdialog.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LammpsInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LammpsInput.a CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LammpsInput.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 53%] Built target LammpsInput make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color=" [ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PLY.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply && /usr/bin/cmake -P CMakeFiles/PLY.dir/cmake_clean_target.cmake make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_link_script CMakeFiles/PLY.dir/link.txt --verbose=1 [ 55%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PLY.a CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o CMakeFiles/PLY.dir/ply.cpp.o CMakeFiles/PLY.dir/PLYPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PLY.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 55%] Built target PLY make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 55%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.cpp [ 56%] Generating ui_coordinateeditordialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/ui_coordinateeditordialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 56%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp [ 56%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o -MF CMakeFiles/PropertyTables.dir/propertytables.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertytables.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertytables.cpp [ 56%] Linking CXX static library ../../../lib/avogadro2/staticplugins/POVRay.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray && /usr/bin/cmake -P CMakeFiles/POVRay.dir/cmake_clean_target.cmake [ 56%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_link_script CMakeFiles/POVRay.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/POVRay.a CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o CMakeFiles/POVRay.dir/povray.cpp.o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/POVRay.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 56%] Built target POVRay make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 56%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o [ 56%] Generating ui_forcefielddialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o -MF CMakeFiles/VRML.dir/vrml.cpp.o.d -o CMakeFiles/VRML.dir/vrml.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml/vrml.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/ui_forcefielddialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefielddialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 56%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/mocs_compilation.cpp [ 56%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -MF CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o.d -o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/volumescalingdialog.cpp [ 56%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp [ 56%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.cpp [ 57%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o -MF CMakeFiles/Forcefield.dir/forcefield.cpp.o.d -o CMakeFiles/Forcefield.dir/forcefield.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp [ 57%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/Crystal_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -MF CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o.d -o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal/CrystalPlugin.cpp [ 57%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ImportPQR.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr && /usr/bin/cmake -P CMakeFiles/ImportPQR.dir/cmake_clean_target.cmake [ 58%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o -MF CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o.d -o CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationmodel.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_link_script CMakeFiles/ImportPQR.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ImportPQR.a CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o CMakeFiles/ImportPQR.dir/importpqr.cpp.o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ImportPQR.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 58%] Built target ImportPQR make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 59%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp [ 59%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp [ 59%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/Select_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o -MF CMakeFiles/Select.dir/SelectPlugin.cpp.o.d -o CMakeFiles/Select.dir/SelectPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select/SelectPlugin.cpp [ 59%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp [ 59%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragment.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp [ 59%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp [ 59%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRML_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -MF CMakeFiles/VRML.dir/VRMLPlugin.cpp.o.d -o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml/VRMLPlugin.cpp [ 59%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Crystal.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/Crystal.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/Crystal.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Crystal.a CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o CMakeFiles/Crystal.dir/crystal.cpp.o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o CMakeFiles/Crystal.dir/supercelldialog.cpp.o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Crystal.a [ 60%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/client.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/client.cpp.o -MF CMakeFiles/MoleQueue.dir/client/client.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/client.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/client.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 60%] Built target Crystal make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 60%] Generating ui_molecularpropertiesdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/ui_molecularpropertiesdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 61%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o [ 61%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -MF CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o.d -o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obforcefielddialog.cpp [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SpaceGroup.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup && /usr/bin/cmake -P CMakeFiles/SpaceGroup.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpaceGroup.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SpaceGroup.a CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SpaceGroup.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 61%] Built target SpaceGroup make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/svg /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 61%] Built target SVG_autogen_timestamp_deps make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 61%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -MF CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenMMInput.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput && /usr/bin/cmake -P CMakeFiles/OpenMMInput.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenMMInput.a CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenMMInput.a [ 61%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrations.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrations.cpp.o -MF CMakeFiles/Vibrations.dir/vibrations.cpp.o.d -o CMakeFiles/Vibrations.dir/vibrations.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrations.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 61%] Built target OpenMMInput make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 62%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp [ 62%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VRML.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml && /usr/bin/cmake -P CMakeFiles/VRML.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_link_script CMakeFiles/VRML.dir/link.txt --verbose=1 [ 62%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Select.a [ 62%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -MF CMakeFiles/PropertyTables.dir/propertymodel.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertymodel.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select && /usr/bin/cmake -P CMakeFiles/Select.dir/cmake_clean_target.cmake /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VRML.a CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o CMakeFiles/VRML.dir/vrml.cpp.o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_link_script CMakeFiles/Select.dir/link.txt --verbose=1 /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VRML.a /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Select.a CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o CMakeFiles/Select.dir/select.cpp.o CMakeFiles/Select.dir/SelectPlugin.cpp.o make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Select.a [ 62%] Built target VRML make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 62%] Built target Select make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 62%] Generating ui_downloaderwidget.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/ui_downloaderwidget.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.ui [ 63%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 63%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp [ 63%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularproperties.cpp [ 63%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o -MF CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.cpp [ 63%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp [ 64%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN 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-isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o -MF CMakeFiles/commands.dir/command.cpp.o.d -o CMakeFiles/commands.dir/command.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts/command.cpp [ 64%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG 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/usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp [ 64%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui 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CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp [ 64%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/c++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue/MoleQueue_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -MF CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.cpp [ 64%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o -MF CMakeFiles/OpenBabel.dir/obprocess.cpp.o.d -o CMakeFiles/OpenBabel.dir/obprocess.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obprocess.cpp [ 64%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -MF CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o.d -o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/plugindownloader.cpp [ 64%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp [ 64%] Linking CXX shared library ../../lib/libAvogadroMoleQueue.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/cmake -E cmake_link_script CMakeFiles/MoleQueue.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libAvogadroMoleQueue.so.1 -o ../../lib/libAvogadroMoleQueue.so.1.99.0 CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o CMakeFiles/MoleQueue.dir/batchjob.cpp.o CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o CMakeFiles/MoleQueue.dir/client/client.cpp.o CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 [ 64%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroMoleQueue.so.1.99.0 ../../lib/libAvogadroMoleQueue.so.1 ../../lib/libAvogadroMoleQueue.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 64%] Built target MoleQueue make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color=" [ 64%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o -MF CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o.d -o CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 64%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp [ 64%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp [ 64%] Linking CXX static library ../../../lib/avogadro2/staticplugins/InsertFragment.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment && /usr/bin/cmake -P CMakeFiles/InsertFragment.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_link_script CMakeFiles/InsertFragment.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/InsertFragment.a CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/InsertFragment.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 64%] Built target InsertFragment make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 64%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp [ 65%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o -MF CMakeFiles/OpenBabel.dir/openbabel.cpp.o.d -o CMakeFiles/OpenBabel.dir/openbabel.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/openbabel.cpp [ 65%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o -MF CMakeFiles/BallStick.dir/ballandstick.cpp.o.d -o CMakeFiles/BallStick.dir/ballandstick.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick/ballandstick.cpp [ 65%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o -MF CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o.d -o CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefielddialog.cpp [ 65%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptcharges.cpp [ 65%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commands_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o -MF CMakeFiles/commands.dir/commandsPlugin.cpp.o.d -o CMakeFiles/commands.dir/commandsPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts/commandsPlugin.cpp [ 65%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Vibrations.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations && /usr/bin/cmake -P CMakeFiles/Vibrations.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vibrations && /usr/bin/cmake -E cmake_link_script CMakeFiles/Vibrations.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Vibrations.a CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o CMakeFiles/Vibrations.dir/vibrations.cpp.o CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Vibrations.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 65%] Built target Vibrations make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 65%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp [ 65%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp [ 65%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp [ 65%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp [ 66%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -MF CMakeFiles/CloseContacts.dir/closecontacts.cpp.o.d -o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts/closecontacts.cpp [ 67%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o -MF CMakeFiles/Force.dir/force.cpp.o.d -o CMakeFiles/Force.dir/force.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force/force.cpp [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/commands.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts && /usr/bin/cmake -P CMakeFiles/commands.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/commands.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/commands.a CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o CMakeFiles/commands.dir/command.cpp.o CMakeFiles/commands.dir/commandsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/commands.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 67%] Built target commands make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 67%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp [ 67%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -MF CMakeFiles/Forcefield.dir/obmmenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp [ 68%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CoordinateEditor.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -P CMakeFiles/CoordinateEditor.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_link_script CMakeFiles/CoordinateEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CoordinateEditor.a CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CoordinateEditor.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 68%] Built target CoordinateEditor make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 68%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp [ 68%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -MF CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o.d -o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp [ 68%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MolecularProperties.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -P CMakeFiles/MolecularProperties.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolecularProperties.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MolecularProperties.a CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MolecularProperties.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 68%] Built target MolecularProperties make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 68%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp [ 68%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -P CMakeFiles/ScriptFileFormats.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptFileFormats.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 68%] Built target ScriptFileFormats make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 68%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp [ 69%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o -MF CMakeFiles/Licorice.dir/licorice.cpp.o.d -o CMakeFiles/Licorice.dir/licorice.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice/licorice.cpp [ 70%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o -MF CMakeFiles/PropertyTables.dir/propertyview.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertyview.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp [ 70%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp [ 70%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o -MF CMakeFiles/Meshes.dir/meshes.cpp.o.d -o CMakeFiles/Meshes.dir/meshes.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp [ 71%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -MF CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o.d -o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals/vanderwaals.cpp [ 71%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptCharges.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -P CMakeFiles/ScriptCharges.dir/cmake_clean_target.cmake [ 71%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -MF CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o.d -o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptCharges.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptCharges.a CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptCharges.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 71%] Built target ScriptCharges make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 71%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp [ 72%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -MF CMakeFiles/NonCovalent.dir/noncovalent.cpp.o.d -o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent/noncovalent.cpp [ 72%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/Force_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o -MF CMakeFiles/Force.dir/ForcePlugin.cpp.o.d -o CMakeFiles/Force.dir/ForcePlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force/ForcePlugin.cpp [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BallStick.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick && /usr/bin/cmake -P CMakeFiles/BallStick.dir/cmake_clean_target.cmake [ 72%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_link_script CMakeFiles/BallStick.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BallStick.a CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o CMakeFiles/BallStick.dir/ballandstick.cpp.o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BallStick.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 72%] Built target BallStick [ 73%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o -MF CMakeFiles/Wireframe.dir/wireframe.cpp.o.d -o CMakeFiles/Wireframe.dir/wireframe.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe/wireframe.cpp [ 73%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -MF CMakeFiles/Forcefield.dir/scriptenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp [ 73%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -MF CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o.d -o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe/WireframePlugin.cpp [ 73%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp [ 73%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Force.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force && /usr/bin/cmake -P CMakeFiles/Force.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_link_script CMakeFiles/Force.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Force.a CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o CMakeFiles/Force.dir/force.cpp.o CMakeFiles/Force.dir/ForcePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Force.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 73%] Built target Force make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 73%] Built target OverlayAxes_autogen_timestamp_deps make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 73%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/Licorice_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -MF CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o.d -o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice/LicoricePlugin.cpp [ 73%] Built target AlignTool_autogen_timestamp_deps make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 73%] Built target BondCentric_autogen_timestamp_deps make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 73%] Built target Editor_autogen_timestamp_deps make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 73%] Built target Focus_autogen_timestamp_deps make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/depend [ 73%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CloseContacts.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts && /usr/bin/cmake -P CMakeFiles/CloseContacts.dir/cmake_clean_target.cmake make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_link_script CMakeFiles/CloseContacts.dir/link.txt --verbose=1 [ 73%] Built target LabelEditor_autogen_timestamp_deps make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CloseContacts.a CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CloseContacts.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 73%] Built target Manipulator_autogen_timestamp_deps make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/depend [ 73%] Built target CloseContacts make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 73%] Built target MeasureTool_autogen_timestamp_deps make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/depend [ 73%] Built target Navigator_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build [ 73%] Built target PlayerTool_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color=" [ 74%] Automatic MOC for target ResetView cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build AutoGen: Refreshing parse cache because it doesn't exist. make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include [ 75%] Automatic MOC for target Selection AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json None AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/resetview/resetview.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/resetview/resetview.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetViewPlugin.cpp [ 75%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/Meshes_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -MF CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o.d -o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes/MeshesPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp" [ 75%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenBabel.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/cmake -P CMakeFiles/OpenBabel.dir/cmake_clean_target.cmake AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenBabel.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenBabel.a CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o CMakeFiles/OpenBabel.dir/obcharges.cpp.o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o CMakeFiles/OpenBabel.dir/obprocess.cpp.o CMakeFiles/OpenBabel.dir/openbabel.cpp.o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenBabel.a [ 75%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 75%] Built target OpenBabel make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 75%] Automatic MOC for target Surfaces cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json None AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.cpp" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/deps" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.h" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/timestamp AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/slatersetconcurrent.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfacedialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfaces.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 75%] Built target ResetView_autogen make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/deps" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 75%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp [ 75%] Automatic MOC for target TemplateTool cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Refreshing parse cache because it doesn't exist. [ 75%] Built target Selection_autogen make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/depend AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetool.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/templatetool/templatetool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetool.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp.d" [ 75%] Built target apbs_autogen_timestamp_deps AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp.d" make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 75%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Licorice.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice && /usr/bin/cmake -P CMakeFiles/Licorice.dir/cmake_clean_target.cmake make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 75%] Built target Cp2kInput_autogen_timestamp_deps make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/depend [ 75%] Built target Surfaces_autogen make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/svg /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_link_script CMakeFiles/Licorice.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Licorice.a CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o CMakeFiles/Licorice.dir/licorice.cpp.o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o [ 75%] Built target GamessInput_autogen_timestamp_deps make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/depend [ 75%] Automatic MOC for target SVG cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json None AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVGPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/svg/svg.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVGPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVGPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 75%] Built target QuantumInput_autogen_timestamp_deps make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 75%] Automatic MOC for target OverlayAxes cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json None [ 75%] Built target TemplateTool_autogen make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/DependInfo.cmake "--color=" /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Licorice.a AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build [ 75%] Built target Licorice AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color=" [ 76%] Automatic MOC for target AlignTool cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 77%] Automatic MOC for target BondCentric cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json None AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc.d" AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/aligntool/aligntool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/aligntool/aligntool.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/aligntool/aligntool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/deps" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/timestamp [ 77%] Built target OverlayAxes_autogen make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color=" [ 77%] Built target SVG_autogen AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp.d" make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color=" [ 78%] Automatic MOC for target Editor cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 78%] Automatic MOC for target Focus cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json None AutoGen: Refreshing parse cache because it doesn't exist. [ 78%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/deps" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.h" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/timestamp AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/EditorPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editor.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editor.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editortoolwidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/EditorPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/EditorPlugin.cpp AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/FocusPlugin.cpp" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/focus/focus.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus/focus.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/FocusPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/FocusPlugin.cpp [ 78%] Built target AlignTool_autogen make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/deps" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenUsed.txt" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/timestamp [ 78%] Automatic MOC for target LabelEditor cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include [ 78%] Built target BondCentric_autogen make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditorPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/labeleditor.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label/labeleditor.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditorPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditorPlugin.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 78%] Automatic MOC for target Manipulator cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json None AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/manipulator/manipulator.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulator.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp [ 78%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaals.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -P CMakeFiles/VanDerWaals.dir/cmake_clean_target.cmake AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaals.dir/link.txt --verbose=1 AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp.d" /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaals.a CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaals.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 78%] Built target VanDerWaals make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend [ 78%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -MF CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o.d -o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp.d" [ 79%] Automatic MOC for target MeasureTool cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json None AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/deps" AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/timestamp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" [ 79%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o -MF CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o.d -o CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/measuretool/measuretool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp [ 79%] Built target Focus_autogen make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend [ 79%] Built target Editor_autogen make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp.d" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/deps" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenUsed.txt" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/timestamp [ 80%] Automatic MOC for target Navigator cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json None make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenUsed.txt" [ 80%] Automatic MOC for target PlayerTool cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json None cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/timestamp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 80%] Built target LabelEditor_autogen AutoGen: Refreshing parse cache because it doesn't exist. make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include [ 80%] Built target Manipulator_autogen make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/navigator/navigator.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator/navigator.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/NavigatorPlugin.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/playertool/playertool.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool/playertool.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp [ 80%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp [ 80%] Generating ui_selectiontoolwidget.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/ui_selectiontoolwidget.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui: Warning: The name 'label' (QLabel) is already in use, defaulting to 'label1'. [ 80%] Generating qrc_selectiontool.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/lib/qt5/bin/rcc --name selectiontool --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.qrc cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp.d" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp.d" [ 81%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 81%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Wireframe.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe && /usr/bin/cmake -P CMakeFiles/Wireframe.dir/cmake_clean_target.cmake [ 81%] Built target MeasureTool_autogen make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/deps" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/timestamp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_link_script CMakeFiles/Wireframe.dir/link.txt --verbose=1 [ 82%] Generating ui_surfacedialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/ui_surfacedialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfacedialog.ui make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp.d" /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Wireframe.a CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o CMakeFiles/Wireframe.dir/wireframe.cpp.o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color=" [ 82%] Built target PlayerTool_autogen make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/depend /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Wireframe.a AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/deps" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 82%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp [ 82%] Built target Wireframe [ 82%] Generating ui_templatetoolwidget.h make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/ui_templatetoolwidget.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.ui make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend [ 82%] Built target Navigator_autogen make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend [ 82%] Generating qrc_template.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/lib/qt5/bin/rcc --name template --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/qrc_template.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/template.qrc make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 82%] Automatic MOC for target Cp2kInput cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json None [ 82%] Automatic MOC for target apbs cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json None [ 82%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o -MF CMakeFiles/Selection.dir/selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/selectiontool.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbs.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbs.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbsPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbsPlugin.cpp AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsoutputdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinput.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build [ 83%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 83%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/mocs_compilation.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp.d" [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Meshes.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes && /usr/bin/cmake -P CMakeFiles/Meshes.dir/cmake_clean_target.cmake AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Meshes.dir/link.txt --verbose=1 AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc.d" /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Meshes.a CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o CMakeFiles/Meshes.dir/meshes.cpp.o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/timestamp /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Meshes.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 83%] Built target Cp2kInput_autogen make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend [ 83%] Built target Meshes make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/svg /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 83%] Automatic MOC for target GamessInput cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json None [ 83%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinput.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PropertyTables.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables && /usr/bin/cmake -P CMakeFiles/PropertyTables.dir/cmake_clean_target.cmake [ 83%] Built target apbs_autogen make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_link_script CMakeFiles/PropertyTables.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PropertyTables.a CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o CMakeFiles/PropertyTables.dir/propertytables.cpp.o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o CMakeFiles/PropertyTables.dir/propertyview.cpp.o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp.d" [ 83%] Automatic MOC for target QuantumInput cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json None AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PropertyTables.a AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp.d" AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput/quantuminput.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc", because it doesn't exist, from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NonCovalent.a AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent && /usr/bin/cmake -P CMakeFiles/NonCovalent.dir/cmake_clean_target.cmake AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/deps" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_link_script CMakeFiles/NonCovalent.dir/link.txt --verbose=1 AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NonCovalent.a CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o [ 83%] Built target PropertyTables make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color=" [ 83%] Built target GamessInput_autogen make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/depend /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NonCovalent.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 83%] Generating qrc_aligntool.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool && /usr/lib/qt5/bin/rcc --name aligntool --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/qrc_aligntool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.qrc [ 83%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc.d" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/DependInfo.cmake "--color=" [ 83%] Built target NonCovalent make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/deps" make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenUsed.txt" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Forcefield.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/bin/cmake -P CMakeFiles/Forcefield.dir/cmake_clean_target.cmake [ 84%] Generating qrc_bondcentrictool.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool && /usr/lib/qt5/bin/rcc --name bondcentrictool --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.qrc [ 84%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignTool_autogen/mocs_compilation.cpp [ 84%] Built target QuantumInput_autogen cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color=" make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_link_script CMakeFiles/Forcefield.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Forcefield.a CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o CMakeFiles/Forcefield.dir/forcefield.cpp.o CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o CMakeFiles/Forcefield.dir/obmmenergy.cpp.o CMakeFiles/Forcefield.dir/scriptenergy.cpp.o CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build [ 84%] Generating ui_editortoolwidget.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/ui_editortoolwidget.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editortoolwidget.ui make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 84%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Forcefield.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp [ 84%] Generating qrc_editor.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor && /usr/lib/qt5/bin/rcc --name editor --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/qrc_editor.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editor.qrc cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 85%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp [ 85%] Built target Forcefield make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 86%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp [ 86%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp [ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PluginDownloader.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -P CMakeFiles/PluginDownloader.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_link_script CMakeFiles/PluginDownloader.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PluginDownloader.a CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PluginDownloader.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 86%] Built target PluginDownloader make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 86%] Generating qrc_label.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/lib/qt5/bin/rcc --name label --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/qrc_label.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.qrc cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu 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-I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp [ 86%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o cd 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-I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o -MF CMakeFiles/ResetView.dir/resetview.cpp.o.d -o CMakeFiles/ResetView.dir/resetview.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/resetview/resetview.cpp [ 86%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -MF CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o.d -o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp [ 86%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o -MF CMakeFiles/Focus.dir/focus.cpp.o.d -o CMakeFiles/Focus.dir/focus.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus/focus.cpp [ 86%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetool.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool 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/usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetool.cpp.o -MF CMakeFiles/TemplateTool.dir/templatetool.cpp.o.d -o CMakeFiles/TemplateTool.dir/templatetool.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetool.cpp [ 86%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB 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/usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o -MF CMakeFiles/SVG.dir/svg.cpp.o.d -o CMakeFiles/SVG.dir/svg.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp [ 86%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o cd 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/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp [ 86%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu 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-I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o -MF CMakeFiles/Editor.dir/editor.cpp.o.d -o CMakeFiles/Editor.dir/editor.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editor.cpp [ 86%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -MF CMakeFiles/LabelEditor.dir/labeleditor.cpp.o.d -o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label/labeleditor.cpp [ 86%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp [ 86%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp [ 86%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -MF CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp [ 86%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -MF CMakeFiles/Selection.dir/SelectionPlugin.cpp.o.d -o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp [ 86%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o -MF CMakeFiles/Editor.dir/editortoolwidget.cpp.o.d -o CMakeFiles/Editor.dir/editortoolwidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editortoolwidget.cpp [ 86%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/Focus_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o -MF CMakeFiles/Focus.dir/FocusPlugin.cpp.o.d -o CMakeFiles/Focus.dir/FocusPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus/FocusPlugin.cpp [ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Selection.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/bin/cmake -P CMakeFiles/Selection.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Selection.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Selection.a CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o CMakeFiles/Selection.dir/selectiontool.cpp.o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Selection.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 86%] Built target Selection make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 86%] Generating ui_manipulatewidget.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/ui_manipulatewidget.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulatewidget.ui [ 87%] Generating qrc_manipulator.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator && /usr/lib/qt5/bin/rcc --name manipulator --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/qrc_manipulator.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulator.qrc cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 87%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp [ 87%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o -MF CMakeFiles/Editor.dir/qrc_editor.cpp.o.d -o CMakeFiles/Editor.dir/qrc_editor.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/qrc_editor.cpp [ 87%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/Editor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o -MF CMakeFiles/Editor.dir/EditorPlugin.cpp.o.d -o CMakeFiles/Editor.dir/EditorPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor/EditorPlugin.cpp [ 87%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVG_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o -MF CMakeFiles/SVG.dir/SVGPlugin.cpp.o.d -o CMakeFiles/SVG.dir/SVGPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg/SVGPlugin.cpp [ 87%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Focus.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus && /usr/bin/cmake -P CMakeFiles/Focus.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_link_script CMakeFiles/Focus.dir/link.txt --verbose=1 [ 87%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -MF CMakeFiles/Surfaces.dir/surfacedialog.cpp.o.d -o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfacedialog.cpp /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Focus.a CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o CMakeFiles/Focus.dir/focus.cpp.o CMakeFiles/Focus.dir/FocusPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Focus.a [ 87%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -MF CMakeFiles/LabelEditor.dir/qrc_label.cpp.o.d -o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/qrc_label.cpp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 87%] Built target Focus [ 88%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditor_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label/LabelEditorPlugin.cpp [ 88%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator 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-isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/manipulator.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulator.cpp [ 88%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool && /usr/bin/c++ 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-I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o -MF CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o.d -o CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp [ 88%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/qrc_manipulator.cpp [ 88%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -MF CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o.d -o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp [ 88%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp [ 88%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Editor.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor && /usr/bin/cmake -P CMakeFiles/Editor.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Editor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Editor.a CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o CMakeFiles/Editor.dir/editor.cpp.o CMakeFiles/Editor.dir/editortoolwidget.cpp.o CMakeFiles/Editor.dir/qrc_editor.cpp.o CMakeFiles/Editor.dir/EditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Editor.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 88%] Built target Editor make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 89%] Generating qrc_measuretool.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool && /usr/lib/qt5/bin/rcc --name measuretool --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/qrc_measuretool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.qrc cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 90%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp [ 90%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp [ 90%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o -MF CMakeFiles/Surfaces.dir/surfaces.cpp.o.d -o CMakeFiles/Surfaces.dir/surfaces.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp [ 90%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SVG.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg && /usr/bin/cmake -P CMakeFiles/SVG.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_link_script CMakeFiles/SVG.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SVG.a CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o CMakeFiles/SVG.dir/svg.cpp.o CMakeFiles/SVG.dir/SVGPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SVG.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 90%] Built target SVG make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 91%] Generating qrc_navigator.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator && /usr/lib/qt5/bin/rcc --name navigator --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/qrc_navigator.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator/navigator.qrc cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 91%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp [ 91%] Linking CXX static library ../../../lib/avogadro2/staticplugins/AlignTool.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool && /usr/bin/cmake -P CMakeFiles/AlignTool.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/AlignTool.a CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o CMakeFiles/AlignTool.dir/aligntool.cpp.o CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/AlignTool.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 91%] Built target AlignTool make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 91%] Generating qrc_playertool.cpp cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool && /usr/lib/qt5/bin/rcc --name playertool --output /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/qrc_playertool.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool/playertool.qrc cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 91%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp [ 91%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LabelEditor.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/LabelEditor.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/LabelEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LabelEditor.a CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LabelEditor.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 91%] Built target LabelEditor make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 91%] Generating ui_apbsoutputdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/ui_apbsoutputdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsoutputdialog.ui [ 91%] Generating ui_apbsdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/ui_apbsdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsdialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 92%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -MF CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp [ 92%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/measuretool.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp [ 92%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/playertool.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool/playertool.cpp [ 92%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/qrc_playertool.cpp [ 92%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp [ 92%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o -MF CMakeFiles/Navigator.dir/navigator.cpp.o.d -o CMakeFiles/Navigator.dir/navigator.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator/navigator.cpp [ 92%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OverlayAxes.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -P CMakeFiles/OverlayAxes.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_link_script CMakeFiles/OverlayAxes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OverlayAxes.a CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OverlayAxes.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 92%] Built target OverlayAxes make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 93%] Generating ui_cp2kinputdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/ui_cp2kinputdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 93%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color=" [ 94%] Generating ui_gamessinputdialog.h cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput && /usr/lib/qt5/bin/uic -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/ui_gamessinputdialog.h /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.ui cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build [ 94%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp [ 94%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp [ 94%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BondCentric.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -P CMakeFiles/BondCentric.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_link_script CMakeFiles/BondCentric.dir/link.txt --verbose=1 [ 94%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o -MF CMakeFiles/apbs.dir/apbs.cpp.o.d -o CMakeFiles/apbs.dir/apbs.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbs.cpp /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BondCentric.a CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BondCentric.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 94%] Built target BondCentric [ 94%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -MF CMakeFiles/QuantumInput.dir/quantuminput.cpp.o.d -o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput/quantuminput.cpp [ 94%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp [ 94%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Manipulator.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator && /usr/bin/cmake -P CMakeFiles/Manipulator.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Manipulator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Manipulator.a CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o CMakeFiles/Manipulator.dir/manipulator.cpp.o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o [ 94%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Manipulator.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 94%] Built target Manipulator [ 94%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsdialog.cpp [ 94%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp [ 95%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PlayerTool.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool && /usr/bin/cmake -P CMakeFiles/PlayerTool.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_link_script CMakeFiles/PlayerTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PlayerTool.a CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o CMakeFiles/PlayerTool.dir/playertool.cpp.o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PlayerTool.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 95%] Built target PlayerTool [ 95%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsoutputdialog.cpp [ 95%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -MF CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o.d -o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp [ 95%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -MF CMakeFiles/Navigator.dir/qrc_navigator.cpp.o.d -o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/qrc_navigator.cpp [ 95%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/Navigator_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -MF CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o.d -o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator/NavigatorPlugin.cpp [ 95%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o -MF CMakeFiles/apbs.dir/opendxreader.cpp.o.d -o CMakeFiles/apbs.dir/opendxreader.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/opendxreader.cpp [ 95%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core 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/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/qrc_measuretool.cpp [ 95%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp [ 95%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/quantumio -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -MF CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o.d -o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp [ 95%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinput.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinput.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinput.cpp [ 96%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QuantumInput.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput && /usr/bin/cmake -P CMakeFiles/QuantumInput.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantumInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QuantumInput.a CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QuantumInput.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 96%] Built target QuantumInput [ 96%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp [ 96%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbs_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o -MF CMakeFiles/apbs.dir/apbsPlugin.cpp.o.d -o CMakeFiles/apbs.dir/apbsPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs/apbsPlugin.cpp [ 96%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Navigator.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator && /usr/bin/cmake -P CMakeFiles/Navigator.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Navigator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Navigator.a CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o CMakeFiles/Navigator.dir/navigator.cpp.o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Navigator.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 96%] Built target Navigator [ 96%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp [ 96%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp [ 97%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -MF CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o.d -o CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.cpp [ 98%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Surfaces.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/bin/cmake -P CMakeFiles/Surfaces.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/Surfaces.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Surfaces.a CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o CMakeFiles/Surfaces.dir/surfaces.cpp.o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/apbs.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/bin/cmake -P CMakeFiles/apbs.dir/cmake_clean_target.cmake [ 99%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -MF CMakeFiles/TemplateTool.dir/qrc_template.cpp.o.d -o CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/qrc_template.cpp /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Surfaces.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/apbs.a CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o CMakeFiles/apbs.dir/apbs.cpp.o CMakeFiles/apbs.dir/apbsdialog.cpp.o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o CMakeFiles/apbs.dir/opendxreader.cpp.o CMakeFiles/apbs.dir/apbsPlugin.cpp.o make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/apbs.a [ 99%] Built target Surfaces make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 99%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -MF CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o.d -o CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp [ 99%] Built target apbs [ 99%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetView_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtopengl -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -MF CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o.d -o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview/ResetViewPlugin.cpp [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MeasureTool.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool && /usr/bin/cmake -P CMakeFiles/MeasureTool.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_link_script CMakeFiles/MeasureTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MeasureTool.a CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o CMakeFiles/MeasureTool.dir/measuretool.cpp.o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MeasureTool.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [ 99%] Built target MeasureTool [100%] Linking CXX static library ../../../lib/avogadro2/staticplugins/GamessInput.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput && /usr/bin/cmake -P CMakeFiles/GamessInput.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/GamessInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/GamessInput.a CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o CMakeFiles/GamessInput.dir/gamessinput.cpp.o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/GamessInput.a [100%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cp2kInput.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -P CMakeFiles/Cp2kInput.dir/cmake_clean_target.cmake make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cp2kInput.dir/link.txt --verbose=1 [100%] Built target GamessInput /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cp2kInput.a CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cp2kInput.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [100%] Built target Cp2kInput [100%] Linking CXX static library ../../../lib/avogadro2/staticplugins/TemplateTool.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/bin/cmake -P CMakeFiles/TemplateTool.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_link_script CMakeFiles/TemplateTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/TemplateTool.a CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o CMakeFiles/TemplateTool.dir/templatetool.cpp.o CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o CMakeFiles/TemplateTool.dir/qrc_template.cpp.o CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o [100%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ResetView.a cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview && /usr/bin/cmake -P CMakeFiles/ResetView.dir/cmake_clean_target.cmake cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_link_script CMakeFiles/ResetView.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ResetView.a CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o CMakeFiles/ResetView.dir/resetview.cpp.o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/TemplateTool.a /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ResetView.a make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [100%] Built target TemplateTool make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [100%] Built target ResetView make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [100%] Built target QtPlugins_autogen_timestamp_deps make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [100%] Automatic MOC for target QtPlugins cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/AutogenInfo.json None AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=c++17 -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginfactory.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/avogadroqtpluginsexport.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.cpp" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/avogadrostaticqtplugins.h" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/pluginmanager.h" /usr/lib/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/build/reproducible-path/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -I/usr/include --include /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/pluginmanager.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins && /usr/bin/cmake -E touch /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [100%] Built target QtPlugins_autogen make -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/depend make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/CMakeFiles/QtPlugins.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [100%] Building CXX object avogadro/qtplugins/CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -MF CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o.d -o CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins/pluginmanager.cpp [100%] Building CXX object avogadro/qtplugins/CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/include -I/build/reproducible-path/avogadrolibs-1.99.0/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro -I/build/reproducible-path/avogadrolibs-1.99.0 -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtgui -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/io -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/core -I/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/calc -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /build/reproducible-path/avogadrolibs-1.99.0/thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins/QtPlugins_autogen/mocs_compilation.cpp [100%] Linking CXX shared library ../../lib/libAvogadroQtPlugins.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtPlugins.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/avogadrolibs-1.99.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wno-deprecated-declarations -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libAvogadroQtPlugins.so.1 -o ../../lib/libAvogadroQtPlugins.so.1.99.0 CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o ../../lib/avogadro2/staticplugins/ThreeDMol.a ../../lib/avogadro2/staticplugins/ApplyColors.a ../../lib/avogadro2/staticplugins/AlignTool.a ../../lib/avogadro2/staticplugins/BondCentric.a ../../lib/avogadro2/staticplugins/Bonding.a ../../lib/avogadro2/staticplugins/Cartoons.a ../../lib/avogadro2/staticplugins/Centroid.a ../../lib/avogadro2/staticplugins/ConfigurePython.a ../../lib/avogadro2/staticplugins/CopyPaste.a ../../lib/avogadro2/staticplugins/Crystal.a ../../lib/avogadro2/staticplugins/CrystalScene.a ../../lib/avogadro2/staticplugins/CustomElements.a ../../lib/avogadro2/staticplugins/Editor.a ../../lib/avogadro2/staticplugins/FetchPDB.a ../../lib/avogadro2/staticplugins/Focus.a ../../lib/avogadro2/staticplugins/Hydrogens.a ../../lib/avogadro2/staticplugins/ImportPQR.a ../../lib/avogadro2/staticplugins/NucleicInput.a ../../lib/avogadro2/staticplugins/Label.a ../../lib/avogadro2/staticplugins/LabelEditor.a ../../lib/avogadro2/staticplugins/LammpsInput.a ../../lib/avogadro2/staticplugins/LineFormatInput.a ../../lib/avogadro2/staticplugins/Manipulator.a ../../lib/avogadro2/staticplugins/MeasureTool.a ../../lib/avogadro2/staticplugins/Navigator.a ../../lib/avogadro2/staticplugins/NetworkDatabases.a ../../lib/avogadro2/staticplugins/OpenBabel.a ../../lib/avogadro2/staticplugins/OpenMMInput.a ../../lib/avogadro2/staticplugins/PlayerTool.a ../../lib/avogadro2/staticplugins/PLY.a ../../lib/avogadro2/staticplugins/POVRay.a ../../lib/avogadro2/staticplugins/PropertyTables.a ../../lib/avogadro2/staticplugins/ResetView.a ../../lib/avogadro2/staticplugins/Select.a ../../lib/avogadro2/staticplugins/Selection.a ../../lib/avogadro2/staticplugins/SpaceGroup.a ../../lib/avogadro2/staticplugins/Surfaces.a ../../lib/avogadro2/staticplugins/TemplateTool.a ../../lib/avogadro2/staticplugins/Vibrations.a ../../lib/avogadro2/staticplugins/VRML.a ../../lib/avogadro2/staticplugins/apbs.a ../../lib/avogadro2/staticplugins/CoordinateEditor.a ../../lib/avogadro2/staticplugins/Cp2kInput.a ../../lib/avogadro2/staticplugins/Forcefield.a ../../lib/avogadro2/staticplugins/GamessInput.a ../../lib/avogadro2/staticplugins/InsertFragment.a ../../lib/avogadro2/staticplugins/MolecularProperties.a ../../lib/avogadro2/staticplugins/SVG.a ../../lib/avogadro2/staticplugins/commands.a ../../lib/avogadro2/staticplugins/QuantumInput.a ../../lib/avogadro2/staticplugins/ScriptCharges.a ../../lib/avogadro2/staticplugins/ScriptFileFormats.a ../../lib/avogadro2/staticplugins/PluginDownloader.a ../../lib/avogadro2/staticplugins/BallStick.a ../../lib/avogadro2/staticplugins/CloseContacts.a ../../lib/avogadro2/staticplugins/Force.a ../../lib/avogadro2/staticplugins/Licorice.a ../../lib/avogadro2/staticplugins/Meshes.a ../../lib/avogadro2/staticplugins/NonCovalent.a ../../lib/avogadro2/staticplugins/VanDerWaals.a ../../lib/avogadro2/staticplugins/Wireframe.a ../../lib/avogadro2/staticplugins/OverlayAxes.a ../../lib/libAvogadroCalc.so.1.99.0 ../../thirdparty/libgwavi/libgwavi.a /usr/lib/x86_64-linux-gnu/libQt5Concurrent.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 ../../lib/libAvogadroMoleQueue.so.1.99.0 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 ../../lib/libAvogadroQuantumIO.so.1.99.0 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libarchive.so ../../lib/libAvogadroQtOpenGL.so.1.99.0 ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 ../../lib/libAvogadroRendering.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLEW.so cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/avogadro/qtplugins && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtPlugins.so.1.99.0 ../../lib/libAvogadroQtPlugins.so.1 ../../lib/libAvogadroQtPlugins.so make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' [100%] Built target QtPlugins make[2]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0' cd obj-x86_64-linux-gnu; make documentation make[2]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/avogadrolibs-1.99.0 -B/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 documentation make[3]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/avogadrolibs-1.99.0 -B/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 docs/CMakeFiles/documentation.dir/all make[4]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/documentation.dir/build.make docs/CMakeFiles/documentation.dir/depend make[5]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/avogadrolibs-1.99.0 /build/reproducible-path/avogadrolibs-1.99.0/docs /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/docs /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/docs/CMakeFiles/documentation.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/documentation.dir/build.make docs/CMakeFiles/documentation.dir/build make[5]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/docs && /usr/bin/cmake -E remove_directory /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/docs/html cd /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/docs/doxyfile warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 102 of file '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/docs/doxyfile' has become obsolete. 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To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2561 of file '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/docs/doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: source 'images' is not a readable file or directory... skipping. Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtplugins Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/icons Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback/64x64 Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback/32x32 Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/icons/colormap Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/avogadro/command Searching for files in directory /build/reproducible-path/avogadrolibs-1.99.0/docs Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/energymanager.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/energymanager.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjonesdata.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjonesdata.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angleiterator.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angleiterator.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angletools.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angletools.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h... Parsing file /build/reproducible-path/build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:177: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:188: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:38: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:42: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:84: warning: unbalanced grouping commands /avogadrolibs-1.99.0/avogadro/core/atom.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomtyper-inline.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomtyper-inline.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomtyper.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomtyper.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomutilities.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomutilities.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/avospglib.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/avospglib.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/basisset.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/basisset.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/color3f.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/color3f.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elementdata.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elementdata.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elements.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elements.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussiansettools.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussiansettools.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/graph.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/graph.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layer.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layer.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/matrix.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/matrix.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/mdlvalence_p.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/mdlvalence_p.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/mesh.h... Parsing file /build/reproducible-path/avogadroli/build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.h:90: warning: unbalanced grouping commands bs-1.99.0/avogadro/core/mesh.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/mutex.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/mutex.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/nameatomtyper.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/nameatomtyper.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuecolors.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuecolors.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/sharedmutex.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/sharedmutex.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slaterset.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slaterset.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slatersettools.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slatersettools.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroups.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroups.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/symbolatomtyper.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/symbolatomtyper.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/utilities.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/utilities.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variantmap.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variantmap.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/vector.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/vector.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cmlformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cmlformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/dcdformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/dcdformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/gromacsformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/gromacsformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/lammpsformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/lammpsformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/mdlformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/mdlformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/mmtfformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/mmtfformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/pdbformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/pdbformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/trrformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/trrformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/turbomoleformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/turbomoleformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/vaspformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/vaspformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/xyzformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/xyzformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.h... Preprocessing /build/reproduc/build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h:128: warning: unbalanced grouping commands ible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/backgroundfileformat.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/backgroundfileformat.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/elementdetail_p.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/elementdetail_p.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/elementitem_p.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/elementitem_p.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/elementtranslator.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/elementtranslator.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacewidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacewidget.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/periodictableview.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/periodictableview.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/persistentatom.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/persistentatom.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/persistentbond.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/persistentbond.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/utilities.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/utilities.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/viewfactory.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/viewfactory.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/activeobjects.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/activeobjects.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/qttextrenderstrategy.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/qttextrenderstrategy.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessus.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessus.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gaussiancube.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gaussiancube.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/genericoutput.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/genericoutput.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/molden.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/molden.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/orca.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/orca.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arcsector.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arcsector.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/avogadrogl.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/avogadrogl.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/avogadrorendering.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/avogadrorendering.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/camera.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/camera.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/quad.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/quad.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shader.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shader.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h... Parsing file /bui/build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:77: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:84: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:91: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:103: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:110: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:117: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:124: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:131: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:138: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:116: warning: unbalanced grouping commands /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:24: warning: Compound Avogadro::Calc::EnergyCalculator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:21: warning: Compound Avogadro::Calc::LennardJones is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:23: warning: Compound Avogadro::Core::AngleIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:59: warning: Compound Avogadro::Core::ArraySet::Holder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:48: warning: Compound Avogadro::Core::ArraySet::PlaceHolder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:47: warning: Compound Avogadro::Core::AtomTemplate is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomutilities.h:20: warning: Compound Avogadro::Core::AtomUtilities is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:23: warning: Compound Avogadro::Core::BondTemplate is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:23: warning: Compound Avogadro::Core::DihedralIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:88: warning: Compound Avogadro::Core::LayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:11: warning: Compound Avogadro::Core::ResidueData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:19: warning: Compound Avogadro::Core::RingPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:36: warning: Compound Avogadro::Core::SecondaryStructureAssigner is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:22: warning: Compound Avogadro::Core::hBondRecord is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:22: warning: Compound Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:32: warning: Compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/lammpsformat.h:57: warning: Compound Avogadro::Io::LammpsDataFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/vaspformat.h:51: warning: Compound Avogadro::Io::OutcarFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/elementdetail_p.h:24: warning: Compound Avogadro::QtGui::ElementDetail is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/elementitem_p.h:24: warning: Compound Avogadro::QtGui::ElementItem is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:20: warning: Compound Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:21: warning: Compound Avogadro::QtGui::HydrogenTools is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:19: warning: Compound Avogadro::QtGui::MoleculeSystem is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.h:25: warning: Compound Avogadro::QtGui::PeriodicTableScene is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:671: warning: Compound Avogadro::QtGui::RWAtom is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:678: warning: Compound Avogadro::QtGui::RWBond is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:27: warning: Compound Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:37: warning: Compound Avogadro::QtGui::ScenePlugin is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:15: warning: Compound Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessus.h:18: warning: Compound Avogadro::QuantumIO::GAMESSUSOutput is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:77: warning: Compound Avogadro::QuantumIO::GamessukOut is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gaussiancube.h:17: warning: Compound Avogadro::QuantumIO::GaussianCube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.h:20: warning: Compound Avogadro::QuantumIO::GaussianFchk is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/genericoutput.h:18: warning: Compound Avogadro::QuantumIO::GenericOutput is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/molden.h:18: warning: Compound Avogadro::QuantumIO::MoldenFile is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.h:19: warning: Compound Avogadro::QuantumIO::MopacAux is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.h:19: warning: Compound Avogadro::QuantumIO::NWChemLog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/orca.h:20: warning: Compound Avogadro::QuantumIO::ORCAOutput is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:14: warning: Compound Avogadro::Rendering::BSplineGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h:14: warning: Compound Avogadro::Rendering::BezierGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:25: warning: Compound Avogadro::Rendering::Cartoon is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:64: warning: Compound Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:112: warning: Compound Avogadro::Rendering::Cylinder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:16: warning: Compound Avogadro::Rendering::CylinderColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:25: warning: Compound Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/camera.h:26: warning: Compound Avogadro::Rendering::EigenData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:35: warning: Compound Avogadro::Rendering::GroupNode::NodeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:38: warning: Compound Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:25: warning: Compound Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:25: warning: Compound Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:28: warning: Compound Avogadro::Rendering::Point is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:42: warning: Compound Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:21: warning: Compound Avogadro::Rendering::ShaderInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:12: warning: Compound Avogadro::Rendering::SolidPipeline is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:92: warning: Compound Avogadro::Rendering::Sphere is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:17: warning: Compound Avogadro::Rendering::SphereColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:26: warning: Compound Avogadro::TypeTraits is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:37: warning: Compound Avogadro::TypeTraits< char > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:114: warning: Compound Avogadro::TypeTraits< double > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:103: warning: Compound Avogadro::TypeTraits< float > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:81: warning: Compound Avogadro::TypeTraits< int > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:59: warning: Compound Avogadro::TypeTraits< short > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:48: warning: Compound Avogadro::TypeTraits< unsigned char > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:92: warning: Compound Avogadro::TypeTraits< unsigned int > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:70: warning: Compound Avogadro::TypeTraits< unsigned short > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:14: warning: Compound Avogadro::VTK::ChartDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:26: warning: Compound Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:14: warning: Compound Avogadro::VTK::QVTKWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h:38: warning: Compound Avogadro::VTK::vtkGLWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:217: warning: no matching class member found for template < Molecule_T > BondTemplate< Molecule_T >::AtomType getOtherAtom(Avogadro::Core::BondTemplate< Molecule_T >::Molecule_T::AtomType atom) const Possible candidates: 'AtomType BondTemplate< Molecule_T >::getOtherAtom(Index index) const' at line 99 of file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h 'AtomType BondTemplate< Molecule_T >::getOtherAtom(AtomType atom) const' at line 104 of file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h ld/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h... Preprocessing /build/reproducible-path/avogadrolibs-1.99.0/docs/mainpage.dox... Parsing file /build/reproducible-path/avogadrolibs-1.99.0/docs/mainpage.dox... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relat/build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:35: warning: Member override (variable) of class vtkAvogadroActor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:62: warning: Member m_scene (variable) of class vtkAvogadroActor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:63: warning: Member m_bounds[6] (variable) of class vtkAvogadroActor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:65: warning: Member m_initialized (variable) of class vtkAvogadroActor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/vector.h:32: warning: Member points[8] (variable) of struct Avogadro::Frustrum is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/vector.h:33: warning: Member planes[4] (variable) of struct Avogadro::Frustrum is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:44: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:121: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:110: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:88: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:66: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:55: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:99: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/types.h:77: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h:97: warning: Member nameForModel(const std::string &identifier) const (function) of class Avogadro::Calc::ChargeManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:35: warning: Member DefaultModel(const std::string &identifier="") (function) of class Avogadro::Calc::DefaultModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:80: warning: Member m_identifier (variable) of class Avogadro::Calc::DefaultModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:81: warning: Member m_elements (variable) of class Avogadro::Calc::DefaultModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:42: warning: Member value(const Eigen::VectorXd &x) override (function) of class Avogadro::Calc::LennardJones is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:43: warning: Member gradient(const Eigen::VectorXd &x, Eigen::VectorXd &grad) override (function) of class Avogadro::Calc::LennardJones is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:51: warning: Member m_molecule (variable) of class Avogadro::Calc::LennardJones is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:52: warning: Member m_cell (variable) of class Avogadro::Calc::LennardJones is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:53: warning: Member m_radii (variable) of class Avogadro::Calc::LennardJones is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:54: warning: Member m_vdw (variable) of class Avogadro::Calc::LennardJones is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:55: warning: Member m_depth (variable) of class Avogadro::Calc::LennardJones is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:56: warning: Member m_exponent (variable) of class Avogadro::Calc::LennardJones is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:58: warning: Member m_elements (variable) of class Avogadro::Calc::LennardJones is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:21: warning: Member Angle (typedef) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:21: warning: Member Dihedral (typedef) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:15: warning: Member AtomHybridization (enumeration) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:32: warning: Member AtomicNumber (enumeration) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:381: warning: Member operator==(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:388: warning: Member operator!=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:394: warning: Member operator<(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:401: warning: Member operator>(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:407: warning: Member operator<=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:413: warning: Member operator>=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:419: warning: Member swap(Array< T > &lhs, Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h:63: warning: Member isCustomElement(unsigned char atomicNumber) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:59: warning: Member ALAData("ALA", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HB3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:88: warning: Member CYSData("CYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "SG", 16 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:119: warning: Member ASPData("ASP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "OD2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD2", 1 }, { "HD2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "OD2" }, { "OD2", "HD2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:153: warning: Member GLUData("GLU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "OE2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "OE2" }, { "OE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:193: warning: Member PHEData("PHE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HZ", 1 }, { "HZ", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "HZ" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:223: warning: Member GLYData("GLY", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA2", 1 }, { "HA3", 1 }, { "HA3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "HA2" }, { "CA", "HA3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:246: warning: Member HISData("HIS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "ND1", 7 }, { "CD2", 6 }, { "CE1", 6 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND1" }, { "ND1", "HD1" }, { "CD2", "NE2" }, { "CD2", "HD2" }, { "CE1", "NE2" }, { "CE1", "HE1" }, { "NE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD2" }, { "ND1", "CE1" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:275: warning: Member ILEData("ILE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "CD1", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD13", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "CD1" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:291: warning: Member LYSData("LYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ1", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HZ3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "HZ1" }, { "NZ", "HZ2" }, { "NZ", "HZ3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:308: warning: Member LEUData("LEU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD23", 1 }, { "HD23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD1" }, { "CG", "CD2" }, { "CG", "HG" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "CD2", "HD21" }, { "CD2", "HD22" }, { "CD2", "HD23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:324: warning: Member METData("MET", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HE3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SD", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:352: warning: Member ASNData("ASN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "ND2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND2" }, { "ND2", "HD21" }, { "ND2", "HD22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:388: warning: Member PROData("PRO", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HD3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "HD2" }, { "CD", "HD3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:426: warning: Member GLNData("GLN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE21", 1 }, { "HE22", 1 }, { "HE22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE2" }, { "NE2", "HE21" }, { "NE2", "HE22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:453: warning: Member ARGData("ARG", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "NE", 7 }, { "CZ", 6 }, { "NH1", 7 }, { "NH2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE", 1 }, { "HH11", 1 }, { "HH12", 1 }, { "HH21", 1 }, { "HH22", 1 }, { "HH22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "NE", "CZ" }, { "NE", "HE" }, { "CZ", "NH1" }, { "NH1", "HH11" }, { "NH1", "HH12" }, { "NH2", "HH21" }, { "NH2", "HH22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CZ", "NH2" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:471: warning: Member SERData("SER", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:502: warning: Member THRData("THR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG1", 8 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG1", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "OG1", "HG1" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:539: warning: Member VALData("VAL", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG11", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "HG11" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:580: warning: Member TRPData("TRP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "NE1", 7 }, { "CE2", 6 }, { "CE3", 6 }, { "CZ2", 6 }, { "CZ3", 6 }, { "CH2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HE1", 1 }, { "HE3", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HH2", 1 }, { "HH2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "NE1" }, { "CD1", "HD1" }, { "CD2", "CE3" }, { "NE1", "CE2" }, { "NE1", "HE1" }, { "CE2", "CZ2" }, { "CE3", "HE3" }, { "CZ2", "HZ2" }, { "CZ3", "CH2" }, { "CZ3", "HZ3" }, { "CH2", "HH2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE3", "CZ3" }, { "CZ2", "CH2" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:602: warning: Member TYRData("TYR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HH", 1 }, { "HH", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "HH" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:618: warning: Member DAData("DA", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:645: warning: Member DCData("DC", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:666: warning: Member DGData("DG", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:693: warning: Member DTData("DT", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C7", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H71", 1 }, { "H72", 1 }, { "H73", 1 }, { "H73", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "C7" }, { "C7", "H71" }, { "C7", "H72" }, { "C7", "H73" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:716: warning: Member DIData("DI", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:741: warning: Member AData("A", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:768: warning: Member CData("C", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:789: warning: Member GData("G", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:816: warning: Member UData("U", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:837: warning: Member IData("I", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:864: warning: Member HEMData("HEM", { { "CHA", 6 }, { "CHB", 6 }, { "CHC", 6 }, { "CHD", 6 }, { "C1A", 6 }, { "C2A", 6 }, { "C3A", 6 }, { "C4A", 6 }, { "CMA", 6 }, { "CAA", 6 }, { "CBA", 6 }, { "CGA", 6 }, { "O1A", 8 }, { "O2A", 8 }, { "C1B", 6 }, { "C2B", 6 }, { "C3B", 6 }, { "C4B", 6 }, { "CMB", 6 }, { "CAB", 6 }, { "CBB", 6 }, { "C1C", 6 }, { "C2C", 6 }, { "C3C", 6 }, { "C4C", 6 }, { "CMC", 6 }, { "CAC", 6 }, { "CBC", 6 }, { "C1D", 6 }, { "C2D", 6 }, { "C3D", 6 }, { "C4D", 6 }, { "CMD", 6 }, { "CAD", 6 }, { "CBD", 6 }, { "CGD", 6 }, { "O1D", 8 }, { "O2D", 8 }, { "NA", 7 }, { "NB", 7 }, { "NC", 7 }, { "ND", 7 }, { "FE", 26 }, { "HHB", 1 }, { "HHC", 1 }, { "HHD", 1 }, { "HMA", 1 }, { "HMAA", 1 }, { "HMAB", 1 }, { "HAA", 1 }, { "HAAA", 1 }, { "HBA", 1 }, { "HBAA", 1 }, { "HMB", 1 }, { "HMBA", 1 }, { "HMBB", 1 }, { "HAB", 1 }, { "HBB", 1 }, { "HBBA", 1 }, { "HMC", 1 }, { "HMCA", 1 }, { "HMCB", 1 }, { "HAC", 1 }, { "HBC", 1 }, { "HBCA", 1 }, { "HMD", 1 }, { "HMDA", 1 }, { "HMDB", 1 }, { "HAD", 1 }, { "HADA", 1 }, { "HBD", 1 }, { "HBDA", 1 }, { "H2A", 1 }, { "H2D", 1 }, { "H2D", 1 } }, { { "CHA", "C1A" }, { "CHA", "HHA" }, { "CHB", "C4A" }, { "CHB", "HHB" }, { "CHC", "C4B" }, { "CHC", "HHC" }, { "CHD", "C1D" }, { "CHD", "HHD" }, { "C1A", "NA" }, { "C2A", "C3A" }, { "C2A", "CAA" }, { "C3A", "CMA" }, { "C4A", "NA" }, { "CMA", "HMA" }, { "CMA", "HMAA" }, { "CMA", "HMAB" }, { "CAA", "CBA" }, { "CAA", "HAA" }, { "CAA", "HAAA" }, { "CBA", "CGA" }, { "CBA", "HBA" }, { "CBA", "HBAA" }, { "CGA", "O2A" }, { "O2A", "H2A" }, { "C1B", "C2B" }, { "C1B", "NB" }, { "C2B", "CMB" }, { "C3B", "C4B" }, { "C3B", "CAB" }, { "CMB", "HMB" }, { "CMB", "HMBA" }, { "CMB", "HMBB" }, { "CAB", "HAB" }, { "CBB", "HBB" }, { "CBB", "HBBA" }, { "C1C", "C2C" }, { "C1C", "NC" }, { "C2C", "CMC" }, { "C3C", "C4C" }, { "C3C", "CAC" }, { "C4C", "NC" }, { "CMC", "HMC" }, { "CMC", "HMCA" }, { "CMC", "HMCB" }, { "CAC", "HAC" }, { "CBC", "HBC" }, { "CBC", "HBCA" }, { "C1D", "C2D" }, { "C2D", "CMD" }, { "C3D", "C4D" }, { "C3D", "CAD" }, { "C4D", "ND" }, { "CMD", "HMD" }, { "CMD", "HMDA" }, { "CMD", "HMDB" }, { "CAD", "CBD" }, { "CAD", "HAD" }, { "CAD", "HADA" }, { "CBD", "CGD" }, { "CBD", "HBD" }, { "CBD", "HBDA" }, { "CGD", "O2D" }, { "O2D", "H2D" }, { "FE", "NA" }, { "FE", "NB" }, { "FE", "NC" }, { "FE", "ND" } }, { { "CHA", "C4D" }, { "CHB", "C1B" }, { "CHC", "C1C" }, { "CHD", "C4C" }, { "C1A", "C2A" }, { "C3A", "C4A" }, { "CGA", "O1A" }, { "C2B", "C3B" }, { "C4B", "NB" }, { "CAB", "CBB" }, { "C2C", "C3C" }, { "CAC", "CBC" }, { "C1D", "ND" }, { "C2D", "C3D" }, { "CGD", "O1D" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:916: warning: Member HOHData("HOH", { { "O", 8 }, { "H1", 1 }, { "H1", 1 } }, { { "O", "H1" }, { "O", "H2" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:923: warning: Member SO4Data("SO4", { { "S", 16 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "S", "O3" }, { "S", "O4" } }, { { "S", "O1" }, { "S", "O2" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:931: warning: Member GOLData("GOL", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "HO2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H32", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "C3" }, { "C2", "H2" }, { "O2", "HO2" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:963: warning: Member EDOData("EDO", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:987: warning: Member MSEData("MSE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SE", 34 }, { "CE", 6 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SE" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SE", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1015: warning: Member NAGData("NAG", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "N2", 7 }, { "O1", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "O7", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H81", 1 }, { "H82", 1 }, { "H83", 1 }, { "HN2", 1 }, { "HO1", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "N2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "N2" }, { "C8", "H81" }, { "C8", "H82" }, { "C8", "H83" }, { "N2", "HN2" }, { "O1", "HO1" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, { { "C7", "O7" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1035: warning: Member PO4Data("PO4", { { "P", 15 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "P", "O2" }, { "P", "O3" }, { "P", "O4" } }, { { "P", "O1" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1043: warning: Member ACTData("ACT", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1060: warning: Member PEGData("PEG", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H42", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "H41" }, { "C4", "H42" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1098: warning: Member BMAData("BMA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1115: warning: Member MANData("MAN", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1132: warning: Member DMSData("DMS", { { "S", 16 }, { "O", 8 }, { "C1", 6 }, { "C2", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "S", "C1" }, { "S", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "H21" }, { "C2", "H22" }, { "C2", "H23" } }, { { "S", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1155: warning: Member ADPData("ADP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1185: warning: Member FADData("FAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4X", 6 }, { "N5", 7 }, { "C5X", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H5'2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3P" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4X" }, { "C4X", "C10" }, { "N5", "C5X" }, { "C5X", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4X", "N5" }, { "C5X", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1241: warning: Member ACEData("ACE", { { "C", 6 }, { "O", 8 }, { "CH3", 6 }, { "H", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "CH3" }, { "C", "H" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1258: warning: Member MPDData("MPD", { { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "CM", 6 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "HO2", 1 }, { "HM1", 1 }, { "HM2", 1 }, { "HM3", 1 }, { "H31", 1 }, { "H32", 1 }, { "H4", 1 }, { "HO4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H52", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "O2" }, { "C2", "CM" }, { "C2", "C3" }, { "O2", "HO2" }, { "CM", "HM1" }, { "CM", "HM2" }, { "CM", "HM3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "C5" }, { "C4", "H4" }, { "O4", "HO4" }, { "C5", "H51" }, { "C5", "H52" }, { "C5", "H53" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1276: warning: Member GLCData("GLC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1293: warning: Member ATPData("ATP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1326: warning: Member MESData("MES", { { "O1", 8 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H81", 1 } }, { { "O1", "C2" }, { "O1", "C6" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "N4", "HN4" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "S" }, { "C8", "H81" }, { "C8", "H82" }, { "S", "O3S" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1343: warning: Member TRSData("TRS", { { "C", 6 }, { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN1", 1 }, { "HN2", 1 }, { "HN3", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO2", 1 } }, { { "C", "C1" }, { "C", "C2" }, { "C", "C3" }, { "C", "N" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "N", "HN1" }, { "N", "HN2" }, { "N", "HN3" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1372: warning: Member PG4Data("PG4", { { "O1", 8 }, { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O3", 8 }, { "C5", 6 }, { "C6", 6 }, { "O4", 8 }, { "C7", 6 }, { "C8", 6 }, { "O5", 8 }, { "HO1", 1 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "H82", 1 } }, { { "O1", "C1" }, { "O1", "HO1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H41" }, { "C4", "H42" }, { "O3", "C5" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "O4" }, { "C6", "H61" }, { "C6", "H62" }, { "O4", "C7" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O5" }, { "C8", "H81" }, { "C8", "H82" }, { "O5", "HO5" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1393: warning: Member PGEData("PGE", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C6", 6 }, { "C5", 6 }, { "O3", 8 }, { "H1", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "H22", 1 }, { "H3", 1 }, { "H32", 1 }, { "H4", 1 }, { "H42", 1 }, { "HO4", 1 }, { "H6", 1 }, { "H62", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H1" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H2" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H3" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H4" }, { "C4", "H42" }, { "O4", "C6" }, { "O4", "HO4" }, { "C6", "C5" }, { "C6", "H6" }, { "C6", "H62" }, { "C5", "O3" }, { "C5", "H5" }, { "C5", "H52" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1410: warning: Member NADData("NAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H5N", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1457: warning: Member FUCData("FUC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H63", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO3", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "H61" }, { "C6", "H62" }, { "C6", "H63" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1474: warning: Member NH2Data("NH2", { { "N", 7 }, { "HN1", 1 }, { "HN1", 1 } }, { { "N", "HN1" }, { "N", "HN2" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1481: warning: Member FMTData("FMT", { { "C", 6 }, { "O1", 8 }, { "O2", 8 }, { "H", 1 }, { "H", 1 } }, { { "C", "O2" }, { "C", "H" }, { "O2", "HO2" } }, { { "C", "O1" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1489: warning: Member NAPData("NAP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1539: warning: Member SEPData("SEP", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "OG", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "P" }, { "C", "OXT" }, { "OXT", "HXT" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "C", "O" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1579: warning: Member GDPData("GDP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1609: warning: Member GALData("GAL", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1626: warning: Member SF4Data("SF4", { { "FE1", 26 }, { "FE2", 26 }, { "FE3", 26 }, { "FE4", 26 }, { "S1", 16 }, { "S2", 16 }, { "S3", 16 }, { "S3", 16 } }, { { "FE1", "S2" }, { "FE1", "S3" }, { "FE1", "S4" }, { "FE2", "S1" }, { "FE2", "S3" }, { "FE2", "S4" }, { "FE3", "S1" }, { "FE3", "S2" }, { "FE3", "S4" }, { "FE4", "S1" }, { "FE4", "S2" }, { "FE4", "S3" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1651: warning: Member BGCData("BGC", { { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H1", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C2", "C3" }, { "C2", "C1" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1668: warning: Member FMNData("FMN", { { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "N5", 7 }, { "C5A", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "C10" }, { "N5", "C5A" }, { "C5A", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4A", "N5" }, { "C5A", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1704: warning: Member UNKData("UNK", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CG", "HG3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1739: warning: Member CITData("CIT", { { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "C2", 6 }, { "C3", 6 }, { "O7", 8 }, { "C4", 6 }, { "C5", 6 }, { "O3", 8 }, { "O4", 8 }, { "C6", 6 }, { "O5", 8 }, { "O6", 8 }, { "HO2", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO7", 1 }, { "H41", 1 }, { "H42", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "O2" }, { "C1", "C2" }, { "O2", "HO2" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O7" }, { "C3", "C4" }, { "C3", "C6" }, { "O7", "HO7" }, { "C4", "C5" }, { "C4", "H41" }, { "C4", "H42" }, { "C5", "O4" }, { "O4", "HO4" }, { "C6", "O6" }, { "O6", "HO6" } }, { { "C1", "O1" }, { "C5", "O3" }, { "C6", "O5" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1767: warning: Member EPEData("EPE", { { "N1", 7 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "O8", 8 }, { "C9", 6 }, { "C10", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "HO8", 1 }, { "H91", 1 }, { "H92", 1 }, { "H101", 1 }, { "H102", 1 }, { "H102", 1 } }, { { "N1", "C2" }, { "N1", "C6" }, { "N1", "C9" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O8" }, { "C8", "H81" }, { "C8", "H82" }, { "O8", "HO8" }, { "C9", "C10" }, { "C9", "H91" }, { "C9", "H92" }, { "C10", "S" }, { "C10", "H101" }, { "C10", "H102" }, { "S", "O3S" }, { "O3S", "HOS3" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1788: warning: Member TPOData("TPO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG2", 6 }, { "OG1", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HOP2", 1 }, { "HOP3", 1 }, { "HOP3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG2" }, { "CB", "OG1" }, { "CB", "HB" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OG1", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "P", "O1P" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1818: warning: Member PLPData("PLP", { { "N1", 7 }, { "C2", 6 }, { "C2A", 6 }, { "C3", 6 }, { "O3", 8 }, { "C4", 6 }, { "C4A", 6 }, { "O4A", 8 }, { "C5", 6 }, { "C6", 6 }, { "C5A", 6 }, { "O4P", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H2A1", 1 }, { "H2A2", 1 }, { "H2A3", 1 }, { "HO3", 1 }, { "H4A", 1 }, { "H6", 1 }, { "H5A1", 1 }, { "H5A2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C6" }, { "C2", "C2A" }, { "C2", "C3" }, { "C2A", "H2A1" }, { "C2A", "H2A2" }, { "C2A", "H2A3" }, { "C3", "O3" }, { "O3", "HO3" }, { "C4", "C4A" }, { "C4", "C5" }, { "C4A", "H4A" }, { "C5", "C5A" }, { "C6", "H6" }, { "C5A", "O4P" }, { "C5A", "H5A1" }, { "C5A", "H5A2" }, { "O4P", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C2" }, { "C3", "C4" }, { "C4A", "O4A" }, { "C5", "C6" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1840: warning: Member GTPData("GTP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "O3B", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "O3B", "PB" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1873: warning: Member SAHData("SAH", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HXT", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "C5'" }, { "C", "OXT" }, { "OXT", "HXT" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1904: warning: Member BMEData("BME", { { "C1", 6 }, { "C2", 6 }, { "O1", 8 }, { "S2", 16 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO1", 1 }, { "HO1", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "S2" }, { "C2", "H21" }, { "C2", "H22" }, { "O1", "HO1" }, { "S2", "HS2" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1928: warning: Member ACYData("ACY", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "HXT", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "OXT", "HXT" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1947: warning: Member ANPData("ANP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "N3B", 7 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HNB1", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "N3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "N3B", "HNB1" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1980: warning: Member IMDData("IMD", { { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "C5", 6 }, { "HN1", 1 }, { "H2", 1 }, { "HN3", 1 }, { "H4", 1 }, { "H4", 1 } }, { { "N1", "C2" }, { "N1", "C5" }, { "N1", "HN1" }, { "C2", "H2" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "H4" }, { "C5", "H5" } }, { { "C2", "N3" }, { "C4", "C5" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2003: warning: Member PCAData("PCA", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "CD", "OE" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2038: warning: Member CSOData("CSO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "SG", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "OD", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "OD" }, { "C", "OXT" }, { "OXT", "HXT" }, { "OD", "HD" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2071: warning: Member MLIData("MLI", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O6", 8 }, { "O7", 8 }, { "O8", 8 }, { "O9", 8 }, { "H11", 1 }, { "H11", 1 } }, { { "C1", "C2" }, { "C1", "C3" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O7" }, { "C3", "O9" } }, { { "C2", "O6" }, { "C3", "O8" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2091: warning: Member FESData("FES", { { "FE1", 26 }, { "FE2", 26 }, { "S1", 16 }, { "S1", 16 } }, { { "FE1", "S1" }, { "FE1", "S2" }, { "FE2", "S1" }, { "FE2", "S2" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2100: warning: Member NDPData("NDP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H21N", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H41N", 1 }, { "H42N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O2N", "H21N" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "N1N", "C6N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "C5N" }, { "C4N", "H41N" }, { "C4N", "H42N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C5N", "C6N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2155: warning: Member AMPData("AMP", { { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP2", 1 }, { "HOP3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "P", "O2P" }, { "P", "O3P" }, { "P", "O5'" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "O1P" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2182: warning: Member NO3Data("NO3", { { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O2", 8 } }, { { "N", "O2" }, { "N", "O3" } }, { { "N", "O1" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2189: warning: Member PTRData("PTR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HO2P", 1 }, { "HO2P", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HO2P" }, { "O3P", "HO3P" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2211: warning: Member IPAData("IPA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H33", 1 }, { "H33", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "H31" }, { "C3", "H32" }, { "C3", "H33" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2239: warning: Member COAData("COA", { { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N7A", 7 }, { "C8A", 6 }, { "N9A", 7 }, { "C1B", 6 }, { "C2B", 6 }, { "O2B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "P3B", 15 }, { "O7A", 8 }, { "O8A", 8 }, { "O9A", 8 }, { "C4B", 6 }, { "O4B", 8 }, { "C5B", 6 }, { "O5B", 8 }, { "P1A", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "P2A", 15 }, { "O4A", 8 }, { "O5A", 8 }, { "O6A", 8 }, { "CBP", 6 }, { "CCP", 6 }, { "CDP", 6 }, { "CEP", 6 }, { "CAP", 6 }, { "OAP", 8 }, { "C9P", 6 }, { "O9P", 8 }, { "N8P", 7 }, { "C7P", 6 }, { "C6P", 6 }, { "C5P", 6 }, { "O5P", 8 }, { "N4P", 7 }, { "C3P", 6 }, { "C2P", 6 }, { "S1P", 16 }, { "H2A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H8A", 1 }, { "H1B", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H3B", 1 }, { "HOA8", 1 }, { "HOA9", 1 }, { "H4B", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "HOA2", 1 }, { "HOA5", 1 }, { "H121", 1 }, { "H122", 1 }, { "H131", 1 }, { "H132", 1 }, { "H133", 1 }, { "H141", 1 }, { "H142", 1 }, { "H143", 1 }, { "H10", 1 }, { "HO1", 1 }, { "HN8", 1 }, { "H71", 1 }, { "H72", 1 }, { "H61", 1 }, { "H62", 1 }, { "HN4", 1 }, { "H31", 1 }, { "H32", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "C4A", "N9A" }, { "C5A", "C6A" }, { "C5A", "N7A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "C8A", "N9A" }, { "C8A", "H8A" }, { "N9A", "C1B" }, { "C1B", "C2B" }, { "C1B", "O4B" }, { "C1B", "H1B" }, { "C2B", "O2B" }, { "C2B", "C3B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C3B", "O3B" }, { "C3B", "C4B" }, { "C3B", "H3B" }, { "O3B", "P3B" }, { "P3B", "O8A" }, { "P3B", "O9A" }, { "O8A", "HOA8" }, { "O9A", "HOA9" }, { "C4B", "O4B" }, { "C4B", "C5B" }, { "C4B", "H4B" }, { "C5B", "O5B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "O5B", "P1A" }, { "P1A", "O2A" }, { "P1A", "O3A" }, { "O2A", "HOA2" }, { "O3A", "P2A" }, { "P2A", "O5A" }, { "P2A", "O6A" }, { "O5A", "HOA5" }, { "O6A", "CCP" }, { "CBP", "CCP" }, { "CBP", "CDP" }, { "CBP", "CEP" }, { "CBP", "CAP" }, { "CCP", "H121" }, { "CCP", "H122" }, { "CDP", "H131" }, { "CDP", "H132" }, { "CDP", "H133" }, { "CEP", "H141" }, { "CEP", "H142" }, { "CEP", "H143" }, { "CAP", "OAP" }, { "CAP", "C9P" }, { "CAP", "H10" }, { "OAP", "HO1" }, { "C9P", "N8P" }, { "N8P", "C7P" }, { "N8P", "HN8" }, { "C7P", "C6P" }, { "C7P", "H71" }, { "C7P", "H72" }, { "C6P", "C5P" }, { "C6P", "H61" }, { "C6P", "H62" }, { "C5P", "N4P" }, { "N4P", "C3P" }, { "N4P", "HN4" }, { "C3P", "C2P" }, { "C3P", "H31" }, { "C3P", "H32" }, { "C2P", "S1P" }, { "C2P", "H21" }, { "C2P", "H22" }, { "S1P", "HS1" } }, { { "N1A", "C6A" }, { "C2A", "N3A" }, { "C4A", "C5A" }, { "N7A", "C8A" }, { "P3B", "O7A" }, { "P1A", "O1A" }, { "P2A", "O4A" }, { "C9P", "O9P" }, { "C5P", "O5P" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2290: warning: Member KCXData("KCX", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "C", 6 }, { "O", 8 }, { "CX", 6 }, { "OXT", 8 }, { "OQ1", 8 }, { "OQ2", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "CX" }, { "NZ", "HZ" }, { "C", "OXT" }, { "CX", "OQ2" }, { "OXT", "HXT" }, { "OQ2", "HQ2" } }, { { "C", "O" }, { "CX", "OQ1" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2308: warning: Member H4BData("H4B", { { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "C8A", 6 }, { "N5", 7 }, { "N8", 7 }, { "C6", 6 }, { "C7", 6 }, { "C9", 6 }, { "O9", 8 }, { "C10", 6 }, { "C11", 6 }, { "O10", 8 }, { "HN21", 1 }, { "HN22", 1 }, { "HN3", 1 }, { "HN5", 1 }, { "HN8", 1 }, { "H6", 1 }, { "H71", 1 }, { "H72", 1 }, { "H9", 1 }, { "HO9", 1 }, { "H10", 1 }, { "H111", 1 }, { "H112", 1 }, { "H113", 1 }, { "H113", 1 } }, { { "N1", "C8A" }, { "C2", "N2" }, { "C2", "N3" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "N5" }, { "C8A", "N8" }, { "N5", "C6" }, { "N5", "HN5" }, { "N8", "C7" }, { "N8", "HN8" }, { "C6", "C7" }, { "C6", "C9" }, { "C6", "H6" }, { "C7", "H71" }, { "C7", "H72" }, { "C9", "O9" }, { "C9", "C10" }, { "C9", "H9" }, { "O9", "HO9" }, { "C10", "C11" }, { "C10", "O10" }, { "C10", "H10" }, { "C11", "H111" }, { "C11", "H112" }, { "C11", "H113" }, { "O10", "HO0" } }, { { "N1", "C2" }, { "C4", "O4" }, { "C4A", "C8A" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2329: warning: Member SAMData("SAM", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "CE" }, { "SD", "C5'" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2361: warning: Member GNPData("GNP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "N3B", 7 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HNB3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'2", 1 }, { "H5'1", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "N3B", "PB" }, { "N3B", "HNB3" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'2" }, { "C5'", "H5'1" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2394: warning: Member FLCData("FLC", { { "CAC", 6 }, { "CA", 6 }, { "CB", 6 }, { "CBC", 6 }, { "CG", 6 }, { "CGC", 6 }, { "OA1", 8 }, { "OA2", 8 }, { "OB1", 8 }, { "OB2", 8 }, { "OG1", 8 }, { "OG2", 8 }, { "OHB", 8 }, { "HA1", 1 }, { "HA2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG2", 1 } }, { { "CAC", "CA" }, { "CAC", "OA2" }, { "CA", "CB" }, { "CA", "HA1" }, { "CA", "HA2" }, { "CB", "CBC" }, { "CB", "CG" }, { "CB", "OHB" }, { "CBC", "OB2" }, { "CG", "CGC" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CGC", "OG2" }, { "OHB", "HOB" } }, { { "CAC", "OA1" }, { "CBC", "OB1" }, { "CGC", "OG1" } }) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.h:194: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (function) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elementdata.h:7: warning: Member element_symbols[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elementdata.h:20: warning: Member element_names[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elementdata.h:47: warning: Member element_masses[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elementdata.h:71: warning: Member valence_electrons[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elementdata.h:83: warning: Member element_VDW[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elementdata.h:226: warning: Member element_covalent[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/elementdata.h:267: warning: Member element_color[][3] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:7: warning: Member chain_color[][3] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:25: warning: Member amino_color[][3] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:41: warning: Member shapely_color[][3] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:57: warning: Member secondary_color[][3] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2431: warning: Member residueDict (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:16: warning: Member space_group_international_number[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:55: warning: Member space_group_schoenflies[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:134: warning: Member space_group_hall_symbol[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:666: warning: Member space_group_international[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1198: warning: Member space_group_international_full[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1730: warning: Member space_group_international_short[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1822: warning: Member space_group_setting[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1884: warning: Member space_group_transforms[] (variable) of namespace Avogadro::Core is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::AngleIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:37: warning: Member begin() (function) of class Avogadro::Core::AngleIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:39: warning: Member end() const (function) of class Avogadro::Core::AngleIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::AngleIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:45: warning: Member operator!=(const AngleIterator &other) (function) of class Avogadro::Core::AngleIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::Core::Array is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:62: warning: Member Holder(const ValueType &value) (function) of class Avogadro::Core::ArraySet::Holder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:64: warning: Member type() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:66: warning: Member clone() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:68: warning: Member m_content (variable) of class Avogadro::Core::ArraySet::Holder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:865: warning: Member Atom(Molecule *m, Index i) (function) of class Avogadro::Core::Atom is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:872: warning: Member Bond(Molecule *m, Index i) (function) of class Avogadro::Core::Bond is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< Molecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/color3f.h:84: warning: Member m_data[3] (variable) of class Avogadro::Core::Color3f is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:40: warning: Member setMolecule(const Molecule *mol) (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:41: warning: Member molecule() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:83: warning: Member specification() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:92: warning: Member resize(Index _size) (function) of class Avogadro::Core::CoordinateSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:93: warning: Member size() const (function) of class Avogadro::Core::CoordinateSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:94: warning: Member coordinates() (function) of class Avogadro::Core::CoordinateSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:95: warning: Member coordinates() const (function) of class Avogadro::Core::CoordinateSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:100: warning: Member operator[](Index _index) (function) of class Avogadro::Core::CoordinateSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:101: warning: Member operator[](Index _index) const (function) of class Avogadro::Core::CoordinateSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:40: warning: Member Options (typedef) of class Avogadro::Core::CrystalTools is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:124: warning: Member data() const (function) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:227: warning: Member setName(const std::string &name_) (function) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:228: warning: Member name() const (function) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:230: warning: Member setCubeType(Type type) (function) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:231: warning: Member cubeType() const (function) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:239: warning: Member m_data (variable) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_min (variable) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_max (variable) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_spacing (variable) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:241: warning: Member m_points (variable) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:242: warning: Member m_minValue (variable) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:242: warning: Member m_maxValue (variable) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:243: warning: Member m_name (variable) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:244: warning: Member m_cubeType (variable) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:245: warning: Member m_lock (variable) of class Avogadro::Core::Cube is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::DihedralIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:37: warning: Member begin() (function) of class Avogadro::Core::DihedralIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:39: warning: Member end() const (function) of class Avogadro::Core::DihedralIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::DihedralIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:45: warning: Member operator!=(const DihedralIterator &other) (function) of class Avogadro::Core::DihedralIterator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:229: warning: Member symmetry() const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:230: warning: Member atomIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:231: warning: Member atomIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:232: warning: Member moIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:233: warning: Member moIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:234: warning: Member gtoIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:235: warning: Member gtoIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:236: warning: Member cIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:237: warning: Member cIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:238: warning: Member gtoA() (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:239: warning: Member gtoA() const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:240: warning: Member gtoC() (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:241: warning: Member gtoC() const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:242: warning: Member gtoCN() (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:248: warning: Member moMatrix(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:256: warning: Member moMatrix(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:264: warning: Member moEnergy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:272: warning: Member moEnergy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:280: warning: Member moOccupancy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:288: warning: Member moOccupancy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:296: warning: Member moNumber(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:304: warning: Member moNumber(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:312: warning: Member densityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:313: warning: Member spinDensityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/gaussiansettools.h:35: warning: Member GaussianSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::GaussianSetTools is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layer.h:31: warning: Member addAtom(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layer.h:32: warning: Member addAtom(size_t layer, Index atom) (function) of class Avogadro::Core::Layer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layer.h:33: warning: Member addAtomToActiveLayer(Index atom) (function) of class Avogadro::Core::Layer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layer.h:34: warning: Member removeAtom(Index atom) (function) of class Avogadro::Core::Layer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layer.h:35: warning: Member removeLayer(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:34: warning: Member LayerData(std::string save="") (function) of class Avogadro::Core::LayerData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:49: warning: Member boolToString(bool b) (function) of class Avogadro::Core::LayerData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:50: warning: Member stringToBool(std::string b) (function) of class Avogadro::Core::LayerData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:51: warning: Member m_save (variable) of class Avogadro::Core::LayerData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:229: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:230: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:303: warning: Member atomLabels() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:343: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:438: warning: Member bondLabels() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:463: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:464: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:466: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:468: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:476: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:477: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:479: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:481: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:488: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:543: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:564: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:565: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:566: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:567: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:568: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:569: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:570: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:571: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:592: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:600: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:601: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:602: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:603: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:614: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:645: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:646: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:647: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:649: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:650: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:775: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:782: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:783: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:787: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:789: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:793: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:795: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:797: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:799: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:800: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:785: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:813: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:818: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:821: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:822: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:823: warning: Member m_atomLabels (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:824: warning: Member m_bondLabels (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:826: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:827: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:828: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:829: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:830: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:832: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:833: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:834: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:835: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:838: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:840: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:841: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:843: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:844: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:845: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:848: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:850: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:70: warning: Member MoleculeInfo(const Molecule *m) (function) of class Avogadro::Core::MoleculeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:76: warning: Member clear() (function) of class Avogadro::Core::MoleculeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:62: warning: Member mol (variable) of class Avogadro::Core::MoleculeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:63: warning: Member visible (variable) of class Avogadro::Core::MoleculeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:64: warning: Member locked (variable) of class Avogadro::Core::MoleculeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:65: warning: Member enable (variable) of class Avogadro::Core::MoleculeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:66: warning: Member settings (variable) of class Avogadro::Core::MoleculeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:67: warning: Member layer (variable) of class Avogadro::Core::MoleculeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:68: warning: Member loaded (variable) of class Avogadro::Core::MoleculeInfo is not documented. ions... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group documentation. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound vtkAvogadroActor... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for compound Avogadro::Frustrum... Generating docs for compound Avogadro::TypeTraits... Generating docs for compound Avogadro::TypeTraits< char >... Generating docs for compound Avogadro::TypeTraits< double >... Generating docs for compound Avogadro::TypeTraits< float >... Generating docs for compound Avogadro::TypeTraits< int >... Generating docs for compound Avogadro::TypeTraits< short >... Generating docs for compound Avogadro::TypeTraits< unsigned char >... Generating docs for compound Avogadro::TypeTraits< unsigned int >... Generating docs for compound Avogadro::TypeTraits< unsigned short >... Generating docs for compound Avogadro::Calc::ChargeManager... Generating docs for compound Avogadro::Calc::ChargeModel... Generating docs for compound Avogadro::Calc::DefaultModel... Generating docs for compound Avogadro::Calc::EnergyCalculator... Generating docs for compound Avogadro::Calc::EnergyManager... Generating docs for compound Avogadro::Calc::LennardJones... Generating docs for namespace Avogadro::Core Generating docs for compound Avogadro::Core::AngleIterator... Generating docs for compound Avogadro::Core::Array... Generating docs for compound Avogadro::Core::ArraySet... Generating docs for nested compound Avogadro::Core::ArraySet::Holder... Generating docs for nested compound Avogadro::Core::ArraySet::PlaceHolder... Generating docs for compound Avogadro::Core::Atom... Generating docs for compound Avogadro::Core::AtomTemplate... Generating docs for compound Avogadro::Core::AtomTyper... Generating docs for compound Avogadro::Core::AtomUtilities... Generating docs for compound Avogadro::Core::AvoSpglib... Generating docs for compound Avogadro::Core::BasisSet... Generating docs for compound Avogadro::Core::Bond... Generating docs for compound Avogadro::Core::BondTemplate... Generating docs for compound Avogadro::Core::Color3f... Generating docs for compound Avogadro::Core::CoordinateBlockGenerator... Generating docs for compound Avogadro::Core::CoordinateSet... Generating docs for compound Avogadro::Core::CrystalTools... Generating docs for compound Avogadro::Core::Cube... Generating docs for compound Avogadro::Core::DihedralIterator... Generating docs for compound Avogadro::Core::Elements... Generating docs for compound Avogadro::Core::GaussianSet... Generating docs for compound Avogadro::Core::GaussianSetTools... Generating docs for compound Avogadro::Core::Graph... Generating docs for compound Avogadro::Core::hBondRecord... Generating docs for compound Avogadro::Core::Layer... Generating docs for compound Avogadro::Core::LayerData... Generating docs for compound Avogadro::Core::LayerManager... Generating docs for compound Avogadro::Core::Mesh... Generating docs for compound Avogadro::Core::Molecule... Generating docs for compound Avogadro::Core::MoleculeInfo... Generating docs for co/build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/nameatomtyper.h:26: warning: Member NameAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::NameAtomTyper is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:60: warning: Member m_maxDistance (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:61: warning: Member m_binCount (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:62: warning: Member m_bins (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:63: warning: Member m_minPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:64: warning: Member m_maxPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:65: warning: Member m_cachedArray (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:66: warning: Member m_cachedIndex (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:39: warning: Member SecondaryStructure (enumeration) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:55: warning: Member Residue(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:56: warning: Member Residue(std::string &name, Index &number) (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:57: warning: Member Residue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:59: warning: Member Residue(const Residue &other) (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:61: warning: Member operator=(Residue other) (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:65: warning: Member residueName() const (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:67: warning: Member setResidueName(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:69: warning: Member residueId() const (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:71: warning: Member setResidueId(Index &number) (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:73: warning: Member chainId() const (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:75: warning: Member setChainId(const char &id) (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:77: warning: Member secondaryStructure() const (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:82: warning: Member setSecondaryStructure(const SecondaryStructure &ss) (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:120: warning: Member hasAtomByIndex(Index index) const (function) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:138: warning: Member m_residueName (variable) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:139: warning: Member m_residueId (variable) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:140: warning: Member m_chainId (variable) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:141: warning: Member m_atomNameMap (variable) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:142: warning: Member m_heterogen (variable) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:143: warning: Member m_color (variable) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:144: warning: Member m_customColorSet (variable) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residue.h:145: warning: Member m_secondaryStructure (variable) of class Avogadro::Core::Residue is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:21: warning: Member ResidueData(std::string name, std::map< std::string, int > atomNames, std::vector< std::pair< std::string, std::string > > singleBonds, std::vector< std::pair< std::string, std::string > > doubleBonds) (function) of class Avogadro::Core::ResidueData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:31: warning: Member ResidueData(const ResidueData &other) (function) of class Avogadro::Core::ResidueData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:39: warning: Member operator=(ResidueData other) (function) of class Avogadro::Core::ResidueData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:46: warning: Member residueAtoms() (function) of class Avogadro::Core::ResidueData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:48: warning: Member residueSingleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/residuedata.h:53: warning: Member residueDoubleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:23: warning: Member RingPerceiver(const Molecule *m=nullptr) (function) of class Avogadro::Core::RingPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:27: warning: Member setMolecule(const Molecule *m) (function) of class Avogadro::Core::RingPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:28: warning: Member molecule() const (function) of class Avogadro::Core::RingPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:31: warning: Member rings() (function) of class Avogadro::Core::RingPerceiver is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:40: warning: Member SecondaryStructureAssigner(Molecule *m=nullptr) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:43: warning: Member assign(Molecule *mol) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slaterset.h:137: warning: Member slaterTypes() (function) of class Avogadro::Core::SlaterSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slaterset.h:138: warning: Member zetas() (function) of class Avogadro::Core::SlaterSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slaterset.h:139: warning: Member factors() (function) of class Avogadro::Core::SlaterSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slaterset.h:140: warning: Member PQNs() (function) of class Avogadro::Core::SlaterSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slaterset.h:141: warning: Member normalizedMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slaterset.h:142: warning: Member densityMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slaterset.h:144: warning: Member outputAll() (function) of class Avogadro::Core::SlaterSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/slatersettools.h:33: warning: Member SlaterSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::SlaterSetTools is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/symbolatomtyper.h:26: warning: Member SymbolAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::SymbolAtomTyper is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.h:27: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::Core::UnitCell is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.h:28: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::Core::UnitCell is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.h:29: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::Core::UnitCell is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.h:30: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::Core::UnitCell is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.h:32: warning: Member operator=(UnitCell other) (function) of class Avogadro::Core::UnitCell is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/unitcell.h:89: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::Core::UnitCell is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant.h:31: warning: Member Type (enumeration) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant.h:127: warning: Member operator=(const Variant &variant) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:25: warning: Member Variant(const char *v) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:31: warning: Member Variant(const MatrixXf &v) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:74: warning: Member setValue(bool v) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:85: warning: Member setValue(char v) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:96: warning: Member setValue(short v) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:107: warning: Member setValue(int v) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:118: warning: Member setValue(long v) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:129: warning: Member setValue(float v) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:140: warning: Member setValue(double v) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:151: warning: Member setValue(std::string string) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:162: warning: Member setValue(const char *string) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:168: warning: Member setValue(void *pointer) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:179: warning: Member setValue(MatrixX matrix) (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:196: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:207: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:218: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:229: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:246: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:259: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:274: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:289: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:298: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:316: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:325: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variantmap.h:29: warning: Member iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/variantmap.h:30: warning: Member const_iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:26: warning: Member Parent (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:29: warning: Member value_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:30: warning: Member allocator_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:31: warning: Member reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:32: warning: Member const_reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:33: warning: Member pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:34: warning: Member const_pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:35: warning: Member iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:36: warning: Member const_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:37: warning: Member reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:38: warning: Member const_reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:39: warning: Member difference_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:40: warning: Member size_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:44: warning: Member ArrayRefContainer(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:49: warning: Member ArrayRefContainer(const ArrayRefContainer &other) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:53: warning: Member ArrayRefContainer(InputIterator first, InputIterator last) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:58: warning: Member reref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:62: warning: Member deref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:69: warning: Member ref() const (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:72: warning: Member m_ref (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/array.h:74: warning: Member data (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:39: warning: Member operator()(const std::string &s1, const std::string &s2) const noexcept (function) of struct Avogadro::Io::CaseInsensitiveComparator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:34: warning: Member operator()(const unsigned char &c1, const unsigned char &c2) const (function) of struct Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:54: warning: Member deserialize(std::istream &in, Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:55: warning: Member serialize(std::ostream &out, const Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:54: warning: Member deserialize(std::istream &in, Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:55: warning: Member serialize(std::ostream &out, const Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.h:56: warning: Member m_json (variable) of class Avogadro::Io::CMsgPackFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/pdbformat.h:56: warning: Member perceiveSubstitutedCations(Core::Molecule &molecule) (function) of class Avogadro::Io::PdbFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:82: warning: Member BatchJob(const QString &scriptFilePath, QObject *parent=nullptr) (function) of class Avogadro::MoleQueue::BatchJob is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:62: warning: Member InvalidBatchId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:68: warning: Member InvalidRequestId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:75: warning: Member InvalidServerId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:38: warning: Member Client(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::Client is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:227: warning: Member MessageType (enumeration) of class Avogadro::MoleQueue::Client is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:238: warning: Member m_jsonRpcClient (variable) of class Avogadro::MoleQueue::Client is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:239: warning: Member m_requests (variable) of class Avogadro::MoleQueue::Client is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:459: warning: Member InputGenerator(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h:37: warning: Member InputGeneratorDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h:38: warning: Member InputGeneratorDialog(const QString &scriptFileName, QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:130: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:137: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:138: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.h:148: warning: Member m_value (variable) of class Avogadro::MoleQueue::JobObject is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:48: warning: Member JsonRpcClient(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:136: warning: Member m_packetCounter (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:137: warning: Member m_socket (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h:153: warning: Member done(int r) override (slot) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h:34: warning: Member MoleQueueDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.h:35: warning: Member MoleQueueManager(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:85: warning: Member data(const QModelIndex &idx, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:86: warning: Member flags(const QModelIndex &idx=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:87: warning: Member headerData(int section, Qt::Orientation orientation, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:89: warning: Member index(int row, int column, const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:91: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:92: warning: Member rowCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:93: warning: Member columnCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h:33: warning: Member MoleQueueWidget(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h:127: warning: Member batchMode() const (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:37: warning: Member ColorButton(QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:38: warning: Member ColorButton(const QColor &initial, QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:41: warning: Member splitVertical() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:42: warning: Member splitHorizontal() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:43: warning: Member closeView() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:30: warning: Member ContainerWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:34: warning: Member setViewWidget(QWidget *widget) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:35: warning: Member viewWidget() (function) of class Avogadro::QtGui::ContainerWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:37: warning: Member setActive(bool active) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:38: warning: Member isActive() const (function) of class Avogadro::QtGui::ContainerWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.h:31: warning: Member CustomElementDialog(Molecule &mol, QWidget *parent=nullptr) (function) of class Avogadro::QtGui::CustomElementDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.h:44: warning: Member ExtensionPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:25: warning: Member Mode (enumeration) of class Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:66: warning: Member setFileName(const QString &fname) (slot) of class Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:63: warning: Member fileNameChanged(const QString &filename) (signal) of class Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:31: warning: Member FileBrowseWidget(QWidget *theParent=nullptr) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:34: warning: Member fileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:36: warning: Member validFileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:38: warning: Member browseButton() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:39: warning: Member lineEdit() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:41: warning: Member setMode(Mode m) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:42: warning: Member mode() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.h:91: warning: Member highlightBlock(const QString &text) override (function) of class Avogadro::QtGui::GenericHighlighter is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:35: warning: Member refresh() (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:37: warning: Member filterTextChanged(const QString &) (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:39: warning: Member activated() (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:41: warning: Member currentChanged(const QModelIndex &selected, const QModelIndex &deselected) (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:45: warning: Member performInsert(const QString &fileName, bool crystal) (signal) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:28: warning: Member InsertFragmentDialog(QWidget *parent=nullptr, QString directory="molecules") (function) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:32: warning: Member fileName() (function) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:612: warning: Member finished() (signal) of class Avogadro::QtGui::InterfaceScript is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:457: warning: Member InterfaceScript(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::InterfaceScript is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:130: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:137: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:138: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. mpound Avogadro::Core::Mutex... Generating docs for compound Avogadro::Core::NameAtomTyper... Generating docs for compound Avogadro::Core::NeighborPerceiver... Generating docs for compound Avogadro::Core::Residue... Generating docs for compound Avogadro::Core::ResidueData... Generating docs for compound Avogadro::Core::RingPerceiver... Generating docs for compound Avogadro::Core::SecondaryStructureAssigner... Generating docs for compound Avogadro::Core::SharedMutex... Generating docs for compound Avogadro::Core::SlaterSet... Generating docs for compound Avogadro::Core::SlaterSetTools... Generating docs for compound Avogadro::Core::SpaceGroups... Generating docs for compound Avogadro::Core::SymbolAtomTyper... Generating docs for compound Avogadro::Core::UnitCell... Generating docs for compound Avogadro::Core::Variant... Generating docs for compound Avogadro::Core::VariantMap... Generating docs for compound Avogadro::Core::internal::ArrayRefContainer... Generating docs for compound Avogadro::Io::CaseInsensitiveComparator... Generating docs for nested compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare... Generating docs for compound Avogadro::Io::CjsonFormat... Generating docs for compound Avogadro::Io::CmlFormat... Generating docs for compound Avogadro::Io::CMsgPackFormat... Generating docs for compound Avogadro::Io::DcdFormat... Generating docs for compound Avogadro::Io::FileFormat... Generating docs for compound Avogadro::Io::FileFormatManager... Generating docs for compound Avogadro::Io::GromacsFormat... Generating docs for compound Avogadro::Io::Hdf5DataFormat... Generating docs for compound Avogadro::Io::LammpsDataFormat... Generating docs for compound Avogadro::Io::LammpsTrajectoryFormat... Generating docs for compound Avogadro::Io::MdlFormat... Generating docs for compound Avogadro::Io::MMTFFormat... Generating docs for compound Avogadro::Io::OutcarFormat... Generating docs for compound Avogadro::Io::PdbFormat... Generating docs for compound Avogadro::Io::PoscarFormat... Generating docs for compound Avogadro::Io::TrrFormat... Generating docs for compound Avogadro::Io::TurbomoleFormat... Generating docs for compound Avogadro::Io::XyzFormat... Generating docs for compound Avogadro::MoleQueue::BatchJob... Generating docs for compound Avogadro::MoleQueue::Client... Generating docs for compound Avogadro::MoleQueue::InputGenerator... Generating docs for compound Avogadro::MoleQueue::InputGeneratorDialog... Generating docs for compound Avogadro::MoleQueue::InputGeneratorWidget... Generating docs for compound Avogadro::MoleQueue::JobObject... Generating docs for compound Avogadro::MoleQueue::JsonRpcClient... Generating docs for compound Avogadro::MoleQueue::MoleQueueDialog... Generating docs for compound Avogadro::MoleQueue::MoleQueueManager... Generating docs for compound Avogadro::MoleQueue::MoleQueueQueueListModel... Generating docs for compound Avogadro::MoleQueue::MoleQueueWidget... Generating docs for compound Avogadro::QtGui::BackgroundFileFormat... Generating docs for compound Avogadro::QtGui::ColorButton... Generating docs for compound Avogadro::QtGui::ContainerWidget... Generating docs for compound Avogadro::QtGui::CustomElementDialog... Generating docs for compound Avogadro::QtGui::ElementDetail... Generating docs for compound Avogadro::QtGui::ElementItem... Generating docs for compound Avogadro::QtGui::ElementTranslator... Generating docs for compound Avogadro::QtGui::ExtensionPlugin... Generating docs for compound Avogadro::QtGui::ExtensionPluginFactory... Generating docs for compound Avogadro::QtGui::FileBrowseWidget... Generating docs for compound Avogadro::QtGui::FileFormatDialog... Generating docs for compound Avogadro::QtGui::GenericHighlighter... Generating docs for nested compound Avogadro::QtGui::GenericHighlighter::Rule... Generating docs for compound Avogadro::QtGui::HydrogenTools... Generating docs for compound Avogadro::QtGui::InsertFragmentDialog... Generating docs for compound Avogadro::QtGui::InterfaceScript... Generating docs for compound Avogadro::QtGui::InterfaceWidget... Gener/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:130: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:137: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:138: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:31: warning: Member ColumnType (enumeration) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:68: warning: Member updateRows() (slot) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:40: warning: Member LayerModel(QObject *p=0) (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:55: warning: Member addItem() (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:56: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:57: warning: Member addMolecule(const Molecule *mol) (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:58: warning: Member setActiveLayer(int index, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:59: warning: Member removeItem(int row, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:61: warning: Member items() const (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:63: warning: Member flipVisible(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:64: warning: Member flipLocked(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:65: warning: Member layerCount() const (function) of class Avogadro::QtGui::LayerModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:132: warning: Member duplicate(const Vector3i &c, const Vector3f &pos) (function) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:139: warning: Member m_iso (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:147: warning: Member m_normals (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:148: warning: Member m_indices (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:149: warning: Member m_progmin (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:150: warning: Member m_progmax (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:158: warning: Member a2iVertexOffset[8][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:159: warning: Member a2iEdgeConnection[12][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:160: warning: Member a2fEdgeDirection[12][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:161: warning: Member a2iTetrahedronEdgeConnection[6][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:162: warning: Member a2iTetrahedronsInACube[6][4] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:163: warning: Member aiTetrahedronEdgeFlags[16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:164: warning: Member a2iTetrahedronTriangles[16][7] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:165: warning: Member aiCubeEdgeFlags[256] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:166: warning: Member a2iTriangleConnectionTable[256][16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: found documented return type for Avogadro::QtGui::MeshGenerator::MeshGenerator that does not return anything /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:48: warning: Member Molecule(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:97: warning: Member addAtom(unsigned char number, Vector3 position3d, Index uniqueId=MaxIndex) (function) of class Avogadro::QtGui::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:135: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:157: warning: Member addBonds(const Core::Array< std::pair< Index, Index > > &bonds, const Core::Array< unsigned char > &orders) (function) of class Avogadro::QtGui::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:230: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:232: warning: Member findAtomUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:233: warning: Member findBondUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:235: warning: Member undoMolecule() (function) of class Avogadro::QtGui::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:237: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:238: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:229: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:230: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:303: warning: Member atomLabels() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:343: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:438: warning: Member bondLabels() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:463: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:464: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:466: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:468: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:476: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:477: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:479: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:481: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:488: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:543: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:564: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:565: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:566: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:567: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:568: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:569: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:570: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:571: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:592: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:600: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:601: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:602: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:603: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:614: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:645: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:646: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:647: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:649: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:650: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:775: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:782: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:783: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:787: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:789: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:793: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:795: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:797: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:799: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:800: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:785: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:813: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:818: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:821: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:822: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:823: warning: Member m_atomLabels (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:824: warning: Member m_bondLabels (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:826: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:827: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:828: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:829: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:830: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:832: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:833: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:834: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:835: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:838: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:840: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:841: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:843: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:844: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:845: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:848: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/molecule.h:850: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:66: warning: Member setActiveMolecule(QObject *active) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:67: warning: Member addItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:68: warning: Member removeItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:69: warning: Member itemChanged() (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:63: warning: Member moleculeStateChanged(Avogadro::QtGui::Molecule *) (signal) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:40: warning: Member MoleculeModel(QObject *p=nullptr) (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:55: warning: Member clear() (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:57: warning: Member molecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:58: warning: Member activeMolecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:60: warning: Member activeMolecule() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:23: warning: Member m_molecule (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:24: warning: Member m_modelView (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:25: warning: Member m_dirty (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:26: warning: Member m_active (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:53: warning: Member splitHorizontal() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:54: warning: Member splitVertical() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:55: warning: Member createView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:56: warning: Member removeView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:50: warning: Member activeWidgetChanged(QWidget *widget) (signal) of class Avogadro::QtGui::MultiViewWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:33: warning: Member MultiViewWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:37: warning: Member addWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:44: warning: Member setActiveWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:46: warning: Member setFactory(ViewFactory *factory) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:47: warning: Member setDefaultView(const QString &viewName) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/persistentatom.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/persistentatom.h:25: warning: Member AtomType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/persistentbond.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/persistentbond.h:25: warning: Member BondType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.h:26: warning: Member PluginLayerManager(const std::string &name="undef") (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.h:32: warning: Member atomLocked(size_t atom) const (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:139: warning: Member m_debug (variable) of class Avogadro::QtGui::PythonScript is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:140: warning: Member m_pythonInterpreter (variable) of class Avogadro::QtGui::PythonScript is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:141: warning: Member m_scriptFilePath (variable) of class Avogadro::QtGui::PythonScript is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:142: warning: Member m_errors (variable) of class Avogadro::QtGui::PythonScript is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:143: warning: Member m_process (variable) of class Avogadro::QtGui::PythonScript is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:675: warning: Member RWAtom(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWAtom is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:682: warning: Member RWBond(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWBond is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< RWMolecule > is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:75: warning: Member molecule() (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:76: warning: Member molecule() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:226: warning: Member atomLabel(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:227: warning: Member setAtomLabel(Index atomId, const std::string &label, const QString &undoText=tr("Change Atom Label")) (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:241: warning: Member setAtomPosition2d(Index, const Vector2 &) (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:242: warning: Member atomPosition2d(Index) (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:243: warning: Member atomPositions2d() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:298: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:299: warning: Member layer(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:656: warning: Member findAtomUniqueId(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:657: warning: Member findBondUniqueId(Index bondId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:664: warning: Member m_interactive (variable) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:666: warning: Member m_undoStack (variable) of class Avogadro::QtGui::RWMolecule is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:30: warning: Member UndoCommand(RWMolecule &m) (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:36: warning: Member positions3d() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:37: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:38: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:40: warning: Member m_mol (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:41: warning: Member m_molecule (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:103: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:42: warning: Member ScenePlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:51: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:100: warning: Member defaultBehavior() const (function) of class Avogadro::QtGui::ScenePlugin is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:106: warning: Member m_layerManager (variable) of class Avogadro::QtGui::ScenePlugin is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:55: warning: Member addItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:56: warning: Member removeItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:57: warning: Member itemChanged() (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:51: warning: Member pluginStateChanged(Avogadro::QtGui::ScenePlugin *) (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:52: warning: Member pluginConfigChanged() (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:30: warning: Member ScenePluginModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:32: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:33: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:34: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:36: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:38: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:40: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:42: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:45: warning: Member clear() (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:47: warning: Member scenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:48: warning: Member activeScenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h:35: warning: Member ScriptLoader(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h:44: warning: Member queryProgramName(const QString &scriptFilePath, QString &displayName) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:20: warning: Member SortFilterTreeProxyModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:25: warning: Member filterAcceptsRow(int sourceRow, const QModelIndex &sourceParent) const (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:30: warning: Member setSourceRoot(const QModelIndex &sourceRoot) (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:152: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:44: warning: Member ToolPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:181: warning: Member createInstance(QObject *parent=nullptr)=0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:182: warning: Member identifier() const =0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h:105: warning: Member rendererInvalid() (signal) of class Avogadro::QtOpenGL::GLWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h:49: warning: Member GLWidget(QWidget *parent=nullptr) (function) of class Avogadro::QtOpenGL::GLWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:80: warning: Member GamessukOut(const QString &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:82: warning: Member GamessukOutNoQt(const std::string &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:83: warning: Member outputParsedData() (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.h:54: warning: Member outputAll() (function) of class Avogadro::QuantumIO::GaussianFchk is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:37: warning: Member outputCoord() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:38: warning: Member outputBasis() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:51: warning: Member atomLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:52: warning: Member coordinates (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:54: warning: Member shellLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:55: warning: Member shells (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:58: warning: Member gtoIndicies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:62: warning: Member gtoExponents (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:63: warning: Member gtoCoefficients (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:66: warning: Member moEnergies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:68: warning: Member moVectors (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:72: warning: Member nShell (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:73: warning: Member nBasisFunctions (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:74: warning: Member nElectrons (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::MopacAux is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::NWChemLog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:37: warning: Member AmbientOcclusionSphereGeometry(const AmbientOcclusionSphereGeometry &other) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:40: warning: Member operator=(AmbientOcclusionSphereGeometry) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:81: warning: Member spheres() const (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:38: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:41: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:35: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:28: warning: Member ArrowGeometry(const ArrowGeometry &other) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:31: warning: Member operator=(ArrowGeometry) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:50: warning: Member drawLine(const Vector3f &start, const Vector3f &end, double lineWidth) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:51: warning: Member drawCone(const Vector3f &base, const Vector3f &cap, double baseRadius, double) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:25: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::ArrowGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h:20: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BezierGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:31: warning: Member ObjectType (enumeration) of class Avogadro::Rendering::BufferObject is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:37: warning: Member BufferObject(ObjectType type=ArrayBuffer) (function) of class Avogadro::Rendering::BufferObject is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/camera.h:44: warning: Member Camera(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/camera.h:45: warning: Member operator=(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:29: warning: Member Cartoon(float minRadius, float maxRadius) (function) of class Avogadro::Rendering::Cartoon is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:32: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, size_t group, size_t id, Core::Residue::SecondaryStructure sec) (function) of class Avogadro::Rendering::Cartoon is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:30: warning: Member ELIPSE_RATIO (variable) of class Avogadro::Rendering::Cartoon is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:37: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:41: warning: Member computeScale(size_t index, float t, float scale) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:43: warning: Member m_type (variable) of class Avogadro::Rendering::Cartoon is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_minRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_maxRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:75: warning: Member ColorNormalVertex(const Vector3ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:79: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:80: warning: Member normalOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:84: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:69: warning: Member color (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:70: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:71: warning: Member normal (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:72: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:73: warning: Member padding[4] (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:48: warning: Member ColorTextureVertex(const Vector3f &p, const Vector3ub &c, const Vector2f &t, const Vector2f &t2=Vector2f::Zero()) (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:53: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:54: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:55: warning: Member textureCoordOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:60: warning: Member textureCoord2Offset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:42: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:43: warning: Member color (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:44: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:45: warning: Member textureCoord (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:46: warning: Member textureCoord2 (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:94: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:123: warning: Member position() const (function) of class Avogadro::Rendering::Cylinder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:124: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Cylinder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:126: warning: Member direction() const (function) of class Avogadro::Rendering::Cylinder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:127: warning: Member setDirection(const Vector3f &dir) (function) of class Avogadro::Rendering::Cylinder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:129: warning: Member length() const (function) of class Avogadro::Rendering::Cylinder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:130: warning: Member setLength(float l) (function) of class Avogadro::Rendering::Cylinder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:132: warning: Member radius() const (function) of class Avogadro::Rendering::Cylinder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:133: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Cylinder is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:18: warning: Member CylinderColor(const Vector3f &pos1, const Vector3f &pos2, float r, const Vector3ub &c, const Vector3ub &c2=Vector3ub::Zero()) (function) of struct Avogadro::Rendering::CylinderColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:27: warning: Member end1 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:28: warning: Member end2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:29: warning: Member radius (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:30: warning: Member color (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:31: warning: Member color2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:45: warning: Member CylinderGeometry(const CylinderGeometry &other) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:48: warning: Member operator=(CylinderGeometry) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:127: warning: Member cylinders() const (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:38: warning: Member DashedLineGeometry(const DashedLineGeometry &other) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:41: warning: Member operator=(DashedLineGeometry) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:33: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:34: warning: Member colorOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/camera.h:29: warning: Member projection (variable) of struct Avogadro::Rendering::EigenData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/camera.h:30: warning: Member modelView (variable) of struct Avogadro::Rendering::EigenData is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:70: warning: Member drawables() const (function) of class Avogadro::Rendering::GeometryNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:99: warning: Member m_drawables (variable) of class Avogadro::Rendering::GeometryNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:38: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:39: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:40: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:41: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:42: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:43: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:44: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:45: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:46: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:47: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:48: warning: Member visit(LineStripGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:89: warning: Member camera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:93: warning: Member overlayCamera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:97: warning: Member scene() (function) of class Avogadro::Rendering::GLRenderer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:101: warning: Member solidPipeline() (function) of class Avogadro::Rendering::GLRenderer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:112: warning: Member m_perspectiveFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:113: warning: Member m_orthographicFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented. ating docs for compound Avogadro::QtGui::JsonWidget... Generating docs for compound Avogadro::QtGui::LayerModel... Generating docs for compound Avogadro::QtGui::MeshGenerator... Generating docs for compound Avogadro::QtGui::Molecule... Generating docs for compound Avogadro::QtGui::MoleculeModel... Generating docs for compound Avogadro::QtGui::MoleculeSystem... Generating docs for compound Avogadro::QtGui::MultiViewWidget... Generating docs for compound Avogadro::QtGui::PeriodicTableScene... Generating docs for compound Avogadro::QtGui::PeriodicTableView... Generating docs for compound Avogadro::QtGui::PersistentAtom... Generating docs for compound Avogadro::QtGui::PersistentBond... Generating docs for compound Avogadro::QtGui::PluginLayerManager... Generating docs for compound Avogadro::QtGui::PythonScript... Generating docs for compound Avogadro::QtGui::RWAtom... Generating docs for compound Avogadro::QtGui::RWBond... Generating docs for compound Avogadro::QtGui::RWLayerManager... Generating docs for compound Avogadro::QtGui::RWMolecule... Generating docs for nested compound Avogadro::QtGui::RWMolecule::UndoCommand... Generating docs for compound Avogadro::QtGui::ScenePlugin... Generating docs for compound Avogadro::QtGui::ScenePluginFactory... Generating docs for compound Avogadro::QtGui::ScenePluginModel... Generating docs for compound Avogadro::QtGui::ScriptLoader... Generating docs for compound Avogadro::QtGui::SortFilterTreeProxyModel... Generating docs for compound Avogadro::QtGui::ToolPlugin... Generating docs for compound Avogadro::QtGui::ToolPluginFactory... Generating docs for compound Avogadro::QtGui::ViewFactory... Generating docs for compound Avogadro::QtOpenGL::ActiveObjects... Generating docs for compound Avogadro::QtOpenGL::GLWidget... Generating docs for compound Avogadro::QtOpenGL::QtTextRenderStrategy... Generating docs for compound Avogadro::QuantumIO::GamessukOut... Generating docs for compound Avogadro::QuantumIO::GAMESSUSOutput... Generating docs for compound Avogadro::QuantumIO::GaussianCube... Generating docs for compound Avogadro::QuantumIO::GaussianFchk... Generating docs for compound Avogadro::QuantumIO::GenericOutput... Generating docs for compound Avogadro::QuantumIO::GUKBasisSet... Generating docs for compound Avogadro::QuantumIO::MoldenFile... Generating docs for compound Avogadro::QuantumIO::MopacAux... Generating docs for compound Avogadro::QuantumIO::NWChemJson... Generating docs for compound Avogadro::QuantumIO::NWChemLog... Generating docs for compound Avogadro::QuantumIO::ORCAOutput... Generating docs for compound Avogadro::Rendering::AmbientOcclusionSphereGeometry... Generating docs for compound Avogadro::Rendering::ArcSector... Generating docs for compound Avogadro::Rendering::ArcStrip... Generating docs for compound Avogadro::Rendering::ArrowGeometry... Generating docs for compound Avogadro::Rendering::BezierGeometry... Generating docs for compound Avogadro::Rendering::BSplineGeometry... Generating docs for compound Avogadro::Rendering::BufferObject... Generating docs for compound Avogadro::Rendering::Camera... Generating docs for compound Avogadro::Rendering::Cartoon... Generating docs for compound Avogadro::Rendering::ColorNormalVertex... Generating docs for compound Avogadro::Rendering::ColorTextureVertex... Generating docs for compound Avogadro::Rendering::CurveGeometry... Generating docs for compound Avogadro::Rendering::Cylinder... Generating docs for compound Avogadro::Rendering::CylinderColor... Generating docs for compound Avogadro::Rendering::CylinderGeometry... Generating docs for compound Avogadro::Rendering::DashedLineGeometry... Generating docs for nested compound Avogadro::Rendering::DashedLineGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::Drawable... Generating docs for compound Avogadro::Rendering::EigenData... Generating docs for compound Avogadro::Rendering::GeometryNode... Generating docs for compound Avogadro::Rendering::GeometryVisitor... Generating docs for compound Avogadro::Rendering::GLRenderer... Generating docs for compound/build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:30: warning: Member GLRenderVisitor(const Camera &camera=Camera(), const TextRenderStrategy *trs=nullptr) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:55: warning: Member visit(TextLabel2D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:56: warning: Member visit(TextLabel3D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:59: warning: Member setCamera(const Camera &camera_) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:38: warning: Member NodeInfo(Node *n, NodeType u) (function) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:39: warning: Member ui (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:40: warning: Member node (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:27: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:33: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:35: warning: Member isValid() const (function) of struct Avogadro::Rendering::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:37: warning: Member molecule (variable) of struct Avogadro::Rendering::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:38: warning: Member type (variable) of struct Avogadro::Rendering::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:39: warning: Member index (variable) of struct Avogadro::Rendering::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:41: warning: Member Line(float r) (function) of struct Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:49: warning: Member add(Point *point) (function) of struct Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:54: warning: Member points (variable) of struct Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:55: warning: Member dirty (variable) of struct Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:56: warning: Member flat (variable) of struct Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:57: warning: Member radius (variable) of struct Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:58: warning: Member vbo (variable) of struct Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:59: warning: Member ibo (variable) of struct Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:60: warning: Member numberOfVertices (variable) of struct Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:61: warning: Member numberOfIndices (variable) of struct Avogadro::Rendering::Line is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:38: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:41: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:35: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:31: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:32: warning: Member colorOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:32: warning: Member PackedVertex(const Vector4ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:38: warning: Member colorOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:39: warning: Member normalOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:40: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:27: warning: Member color (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:28: warning: Member normal (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:29: warning: Member vertex (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:30: warning: Member padding[4] (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:37: warning: Member PLYVisitor(const Camera &camera) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:40: warning: Member begin() (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:41: warning: Member end() (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:55: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:56: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:59: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:62: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:63: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:64: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:30: warning: Member Point(const Vector3f &p, const Vector3ub &c, size_t i) (function) of struct Avogadro::Rendering::Point is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:33: warning: Member pos (variable) of struct Avogadro::Rendering::Point is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:34: warning: Member color (variable) of struct Avogadro::Rendering::Point is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:35: warning: Member id (variable) of struct Avogadro::Rendering::Point is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:29: warning: Member POVRayVisitor(const Camera &camera) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:58: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:64: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:69: warning: Member isValid() const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:71: warning: Member molecule (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:72: warning: Member type (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:73: warning: Member index (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:38: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:41: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:35: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/scene.h:108: warning: Member rootNode() const (function) of class Avogadro::Rendering::Scene is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shader.h:37: warning: Member Shader(Type type=Unknown, const std::string &source="") (function) of class Avogadro::Rendering::Shader is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shader.h:70: warning: Member m_type (variable) of class Avogadro::Rendering::Shader is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shader.h:71: warning: Member m_handle (variable) of class Avogadro::Rendering::Shader is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shader.h:72: warning: Member m_dirty (variable) of class Avogadro::Rendering::Shader is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shader.h:74: warning: Member m_source (variable) of class Avogadro::Rendering::Shader is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shader.h:75: warning: Member m_error (variable) of class Avogadro::Rendering::Shader is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:23: warning: Member vertexShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:24: warning: Member fragmentShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:25: warning: Member program (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:147: warning: Member setUniformValue(const std::string &name, const Eigen::Matrix4f &matrix) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:156: warning: Member setAttributeArrayInternal(const std::string &name, void *buffer, Avogadro::Type type, int tupleSize, NormalizeOption normalize) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:159: warning: Member m_handle (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:160: warning: Member m_vertexShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:161: warning: Member m_fragmentShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:163: warning: Member m_linked (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:165: warning: Member m_error (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:167: warning: Member m_attributes (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:169: warning: Member m_textureUnitBindings (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:170: warning: Member m_boundTextureUnits (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:53: warning: Member setAoEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:59: warning: Member setAoStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:65: warning: Member setEdEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:75: warning: Member setEdStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:95: warning: Member Sphere(const Vector3f &position_, float radius_, Primitive::Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Sphere is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:101: warning: Member position() const (function) of class Avogadro::Rendering::Sphere is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:102: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Sphere is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:104: warning: Member radius() const (function) of class Avogadro::Rendering::Sphere is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:105: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Sphere is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:19: warning: Member SphereColor(Vector3f centre, float r, Vector3ub c) (function) of struct Avogadro::Rendering::SphereColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:22: warning: Member center (variable) of struct Avogadro::Rendering::SphereColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:23: warning: Member radius (variable) of struct Avogadro::Rendering::SphereColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:24: warning: Member color (variable) of struct Avogadro::Rendering::SphereColor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:43: warning: Member SphereGeometry(const SphereGeometry &other) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:46: warning: Member operator=(SphereGeometry) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:101: warning: Member spheres() const (function) of class Avogadro::Rendering::SphereGeometry is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:60: warning: Member TextProperties(const TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:63: warning: Member operator=(TextProperties other) (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:64: warning: Member swap(TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:66: warning: Member operator==(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:67: warning: Member operator!=(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:76: warning: Member pixelHeight() const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:83: warning: Member hAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:90: warning: Member vAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:102: warning: Member rotationDegreesCW() const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:109: warning: Member fontFamily() const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:116: warning: Member fontStyles() const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:123: warning: Member bold() const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:130: warning: Member italic() const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:137: warning: Member underline() const (function) of class Avogadro::Rendering::TextProperties is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:113: warning: Member minFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:114: warning: Member setMagFilter(FilterOption opt) (function) of class Avogadro::Rendering::Texture2D is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:115: warning: Member magFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:157: warning: Member release() const (function) of class Avogadro::Rendering::Texture2D is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:159: warning: Member error() const (function) of class Avogadro::Rendering::Texture2D is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h:25: warning: Member TransformNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::TransformNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:29: warning: Member VRMLVisitor(const Camera &camera) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:19: warning: Member ChartDialog(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:22: warning: Member chartWidget() (function) of class Avogadro::VTK::ChartDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:24: warning: Member sizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:25: warning: Member minimumSizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:34: warning: Member Axis (enumeration) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:31: warning: Member ChartWidget(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:40: warning: Member addPlot(const std::vector< float > &x, const std::vector< float > &y, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:43: warning: Member addSeries(const std::vector< float > &y, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:46: warning: Member addPlots(const std::vector< std::vector< float > > &plotData, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:49: warning: Member clearPlots() (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:51: warning: Member setXAxisTitle(const std::string &title) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:53: warning: Member setYAxisTitle(const std::string &title) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:55: warning: Member setTickLabels(Axis a, const std::vector< float > &tickPositions, const std::vector< std::string > &tickLabels) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:58: warning: Member setAxisLimits(Axis a, float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:59: warning: Member setXAxisLimits(float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:60: warning: Member setYAxisLimits(float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:62: warning: Member setFontSize(int size=14) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:63: warning: Member setLineWidth(float width=1.0) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:65: warning: Member setAxisLogScale(Axis a, bool logScale) (function) of class Avogadro::VTK::ChartWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h:43: warning: Member vtkGLWidget(QWidget *p=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::vtkGLWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented. /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved Avogadro::Rendering::GLRenderVisitor... Generating docs for compound Avogadro::Rendering::GroupNode... Generating docs for nested compound Avogadro::Rendering::GroupNode::NodeInfo... Generating docs for compound Avogadro::Rendering::Identifier... Generating docs for compound Avogadro::Rendering::Line... Generating docs for compound Avogadro::Rendering::LineStripGeometry... Generating docs for nested compound Avogadro::Rendering::LineStripGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::MeshGeometry... Generating docs for nested compound Avogadro::Rendering::MeshGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::Node... Generating docs for compound Avogadro::Rendering::PLYVisitor... Generating docs for compound Avogadro::Rendering::Point... Generating docs for compound Avogadro::Rendering::POVRayVisitor... Generating docs for compound Avogadro::Rendering::Primitive... Generating docs for nested compound Avogadro::Rendering::Primitive::Identifier... Generating docs for compound Avogadro::Rendering::Quad... Generating docs for compound Avogadro::Rendering::QuadOutline... Generating docs for compound Avogadro::Rendering::Scene... Generating docs for compound Avogadro::Rendering::Shader... Generating docs for compound Avogadro::Rendering::ShaderInfo... Generating docs for compound Avogadro::Rendering::ShaderProgram... Generating docs for compound Avogadro::Rendering::SolidPipeline... Generating docs for compound Avogadro::Rendering::Sphere... Generating docs for compound Avogadro::Rendering::SphereColor... Generating docs for compound Avogadro::Rendering::SphereGeometry... Generating docs for compound Avogadro::Rendering::TextLabel2D... Generating docs for compound Avogadro::Rendering::TextLabel3D... Generating docs for compound Avogadro::Rendering::TextLabelBase... Generating docs for compound Avogadro::Rendering::TextProperties... Generating docs for compound Avogadro::Rendering::TextRenderStrategy... Generating docs for compound Avogadro::Rendering::Texture2D... Generating docs for compound Avogadro::Rendering::TransformNode... Generating docs for compound Avogadro::Rendering::Visitor... Generating docs for compound Avogadro::Rendering::VolumeGeometry... Generating docs for compound Avogadro::Rendering::VRMLVisitor... Generating docs for compound Avogadro::VTK::ChartDialog... Generating docs for compound Avogadro::VTK::ChartWidget... Generating docs for compound Avogadro::VTK::QVTKWidget... Generating docs for compound Avogadro::VTK::vtkGLWidget... Generating graph info page... Generating directory documentation... Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class Avogadro::QtOpenGL::ActiveObjects Generating XML output for class Avogadro::Rendering::AmbientOcclusionSphereGeometry Generating XML output for class Avogadro::Core::AngleIterator Generating XML output for class Avogadro::Rendering::ArcSector Generating XML output for class Avogadro::Rendering::ArcStrip Generating XML output for class Avogadro::Core::Array Generating XML output for class Avogadro::Core::internal::ArrayRefContainer Generating XML output for class Avogadro::Core::ArraySet Generating XML output for class Avogadro::Rendering::ArrowGeometry Generating XML output for class Avogadro::Core::Atom Generating XML output for class Avogadro::Core::AtomTemplate Generating XML output for class Avogadro::Core::AtomTyper Generating XML output for class Avogadro::Core::AtomUtilities Generating XML output for class Avogadro::Core::AvoSpglib Generating XML output for class Avogadro::/build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.h:144: warning: The following parameter of Avogadro::QtGui::FileFormatDialog::selectFileFormat(QWidget *parentWidget, const std::vector< const Io::FileFormat * > &ffs, const QString &caption, const QString &prompt, const QString &settingsKey=QString(), const QString &formatPrefix=QString()) is not documented: parameter 'formatPrefix' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:319: warning: argument 'fmap' of command @param is not found in the argument list of FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:319: warning: The following parameter of Avogadro::Io::FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const is not documented: parameter 'fvec' QtGui::BackgroundFileFormat Generating XML output for class Avogadro::Core::BasisSet Generating XML output for class Avogadro::MoleQueue::BatchJob Generating XML output for class Avogadro::Rendering::BezierGeometry Generating XML output for class Avogadro::Core::Bond Generating XML output for class Avogadro::Core::BondTemplate Generating XML output for class Avogadro::Rendering::BSplineGeometry Generating XML output for class Avogadro::Rendering::BufferObject Generating XML output for class Avogadro::Rendering::Camera Generating XML output for class Avogadro::Rendering::Cartoon Generating XML output for class Avogadro::Io::CaseInsensitiveComparator Generating XML output for class Avogadro::Calc::ChargeManager Generating XML output for class Avogadro::Calc::ChargeModel Generating XML output for class Avogadro::VTK::ChartDialog Generating XML output for class Avogadro::VTK::ChartWidget Generating XML output for class Avogadro::Io::CjsonFormat Generating XML output for class Avogadro::MoleQueue::Client Generating XML output for class Avogadro::Io::CmlFormat Generating XML output for class Avogadro::Io::CMsgPackFormat Generating XML output for class Avogadro::Core::Color3f Generating XML output for class Avogadro::QtGui::ColorButton Generating XML output for class Avogadro::Rendering::ColorNormalVertex Generating XML output for class Avogadro::Rendering::ColorTextureVertex Generating XML output for class Avogadro::QtGui::ContainerWidget Generating XML output for class Avogadro::Core::CoordinateBlockGenerator Generating XML output for class Avogadro::Core::CoordinateSet Generating XML output for class Avogadro::Core::CrystalTools Generating XML output for class Avogadro::Core::Cube Generating XML output for class Avogadro::Rendering::CurveGeometry Generating XML output for class Avogadro::QtGui::CustomElementDialog Generating XML output for class Avogadro::Rendering::Cylinder Generating XML output for class Avogadro::Rendering::CylinderColor Generating XML output for class Avogadro::Rendering::CylinderGeometry Generating XML output for class Avogadro::Rendering::DashedLineGeometry Generating XML output for class Avogadro::Io::DcdFormat Generating XML output for class Avogadro::Calc::DefaultModel Generating XML output for class Avogadro::Core::DihedralIterator Generating XML output for class Avogadro::Rendering::Drawable Generating XML output for class Avogadro::Rendering::EigenData Generating XML output for class Avogadro::QtGui::ElementDetail Generating XML output for class Avogadro::QtGui::ElementItem Generating XML output for class Avogadro::Core::Elements Generating XML output for class Avogadro::QtGui::ElementTranslator Generating XML output for class Avogadro::Calc::EnergyCalculator Generating XML output for class Avogadro::Calc::EnergyManager Generating XML output for class Avogadro::QtGui::ExtensionPlugin Generating XML output for class Avogadro::QtGui::ExtensionPluginFactory Generating XML output for class Avogadro::QtGui::FileBrowseWidget Generating XML output for class Avogadro::Io::FileFormat Generating XML output for class Avogadro::QtGui::FileFormatDialog Generating XML output for class Avogadro::Io::FileFormatManager Generating XML output for class Avogadro::Frustrum Generating XML output for class Avogadro::QuantumIO::GamessukOut Generating XML output for class Avogadro::QuantumIO::GAMESSUSOutput Generating XML output for class Avogadro::QuantumIO::GaussianCube Generating XML output for class Avogadro::QuantumIO::GaussianFchk Generating XML output for class Avogadro::Core::GaussianSet Generating XML output for class Avogadro::Core::GaussianSetTools Generating XML output for class Avogadro::QtGui::GenericHighlighter Generating XML output for class Avogadro::QuantumIO::GenericOutput Generating XML output for class Avogadro::Rendering::GeometryNode Generating XML output for class Avogadro::Rendering::GeometryVisitor Generating XML output for class Avogadro::Rendering::GLRenderer Generating XML output for class Avogadro::Rendering::GLRenderVisitor Generating XML output for class Avogadro::QtOpenGL::GLWidget Genera/build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:299: warning: Found unknown command '@data' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' ting XML output for class Avogadro::Core::Graph Generating XML output for class Avogadro::Io::GromacsFormat Generating XML output for class Avogadro::Rendering::GroupNode Generating XML output for class Avogadro::QuantumIO::GUKBasisSet Generating XML output for class Avogadro::Core::hBondRecord Generating XML output for class Avogadro::Io::Hdf5DataFormat Generating XML output for class Avogadro::Core::ArraySet::Holder Generating XML output for class Avogadro::QtGui::HydrogenTools Generating XML output for class Avogadro::Rendering::Identifier Generating XML output for class Avogadro::Rendering::Primitive::Identifier Generating XML output for class Avogadro::MoleQueue::InputGenerator Generating XML output for class Avogadro::MoleQueue::InputGeneratorDialog Generating XML output for class Avogadro::MoleQueue::InputGeneratorWidget Generating XML output for class Avogadro::QtGui::InsertFragmentDialog Generating XML output for class Avogadro::QtGui::InterfaceScript Generating XML output for class Avogadro::QtGui::InterfaceWidget Generating XML output for class Avogadro::MoleQueue::JobObject Generating XML output for class Avogadro::MoleQueue::JsonRpcClient Generating XML output for class Avogadro::QtGui::JsonWidget Generating XML output for class Avogadro::Io::LammpsDataFormat Generating XML output for class Avogadro::Io::LammpsTrajectoryFormat Generating XML output for class Avogadro::Core::Layer Generating XML output for class Avogadro::Core::LayerData Generating XML output for class Avogadro::Core::LayerManager Generating XML output for class Avogadro::QtGui::LayerModel Generating XML output for class Avogadro::Calc::LennardJones Generating XML output for class Avogadro::Rendering::Line Generating XML output for class Avogadro::Rendering::LineStripGeometry Generating XML output for class Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare Generating XML output for class Avogadro::Io::MdlFormat Generating XML output for class Avogadro::Core::Mesh Generating XML output for class Avogadro::QtGui::MeshGenerator Generating XML output for class Avogadro::Rendering::MeshGeometry Generating XML output for class Avogadro::Io::MMTFFormat Generating XML output for class Avogadro::QuantumIO::MoldenFile Generating XML output for class Avogadro::Core::Molecule Generating XML output for class Avogadro::QtGui::Molecule Generating XML output for class Avogadro::Core::MoleculeInfo Generating XML output for class Avogadro::QtGui::MoleculeModel Generating XML output for class Avogadro::QtGui::MoleculeSystem Generating XML output for class Avogadro::MoleQueue::MoleQueueDialog Generating XML output for class Avogadro::MoleQueue::MoleQueueManager Generating XML output for class Avogadro::MoleQueue::MoleQueueQueueListModel Generating XML output for class Avogadro::MoleQueue::MoleQueueWidget Generating XML output for class Avogadro::QuantumIO::MopacAux Generating XML output for class Avogadro::QtGui::MultiViewWidget Generating XML output for class Avogadro::Core::Mutex Generating XML output for class Avogadro::Core::NameAtomTyper Generating XML output for class Avogadro::Core::NeighborPerceiver Generating XML output for class Avogadro::Rendering::Node Generating XML output for class Avogadro::Rendering::GroupNode::NodeInfo Generating XML output for class Avogadro::QuantumIO::NWChemJson Generating XML output for class Avogadro::QuantumIO::NWChemLog Generating XML output for class Avogadro::QuantumIO::ORCAOutput Generating XML output for class Avogadro::Io::OutcarFormat Generating XML output for class Avogadro::Rendering::DashedLineGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::LineStripGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::MeshGeometry::PackedVertex Generating XML output for class Avogadro::Io::PdbFormat Generating XML output for class Avogadro::QtGui::PeriodicTableScene Generating XML output for class Avogadro::QtGui::PeriodicTableView Generating XML output for class Avogadro::QtGui::PersistentAtom Generating XML output for class Avogadro::QtGui::PersistentBond Generating XML/build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' output for class Avogadro::Core::ArraySet::PlaceHolder Generating XML output for class Avogadro::QtGui::PluginLayerManager Generating XML output for class Avogadro::Rendering::PLYVisitor Generating XML output for class Avogadro::Rendering::Point Generating XML output for class Avogadro::Io::PoscarFormat Generating XML output for class Avogadro::Rendering::POVRayVisitor Generating XML output for class Avogadro::Rendering::Primitive Generating XML output for class Avogadro::QtGui::PythonScript Generating XML output for class Avogadro::QtOpenGL::QtTextRenderStrategy Generating XML output for class Avogadro::Rendering::Quad Generating XML output for class Avogadro::Rendering::QuadOutline Generating XML output for class Avogadro::VTK::QVTKWidget Generating XML output for class Avogadro::MoleQueue::BatchJob::Request Generating XML output for class Avogadro::Core::Residue Generating XML output for class Avogadro::Core::ResidueData Generating XML output for class Avogadro::Core::RingPerceiver Generating XML output for class Avogadro::QtGui::GenericHighlighter::Rule Generating XML output for class Avogadro::QtGui::RWAtom Generating XML output for class Avogadro::QtGui::RWBond Generating XML output for class Avogadro::QtGui::RWLayerManager Generating XML output for class Avogadro::QtGui::RWMolecule Generating XML output for class Avogadro::Rendering::Scene Generating XML output for class Avogadro::QtGui::ScenePlugin Generating XML output for class Avogadro::QtGui::ScenePluginFactory Generating XML output for class Avogadro::QtGui::ScenePluginModel Generating XML output for class Avogadro::QtGui::ScriptLoader Generating XML output for class Avogadro::Core::SecondaryStructureAssigner Generating XML output for class Avogadro::Rendering::Shader Generating XML output for class Avogadro::Rendering::ShaderInfo Generating XML output for class Avogadro::Rendering::ShaderProgram Generating XML output for class Avogadro::Core::SharedMutex Generating XML output for class Avogadro::Core::SlaterSet Generating XML output for class Avogadro::Core::SlaterSetTools Generating XML output for class Avogadro::Rendering::SolidPipeline Generating XML output for class Avogadro::QtGui::SortFilterTreeProxyModel Generating XML output for class Avogadro::Core::SpaceGroups Generating XML output for class Avogadro::Rendering::Sphere Generating XML output for class Avogadro::Rendering::SphereColor Generating XML output for class Avogadro::Rendering::SphereGeometry Generating XML output for class Avogadro::Core::SymbolAtomTyper Generating XML output for class Avogadro::Rendering::TextLabel2D Generating XML output for class Avogadro::Rendering::TextLabel3D Generating XML output for class Avogadro::Rendering::TextLabelBase Generating XML output for class Avogadro::Rendering::TextProperties Generating XML output for class Avogadro::Rendering::TextRenderStrategy Generating XML output for class Avogadro::Rendering::Texture2D Generating XML output for class Avogadro::QtGui::ToolPlugin Generating XML output for class Avogadro::QtGui::ToolPluginFactory Generating XML output for class Avogadro::Rendering::TransformNode Generating XML output for class Avogadro::Io::TrrFormat Generating XML output for class Avogadro::Io::TurbomoleFormat Generating XML output for class Avogadro::TypeTraits Generating XML output for class Avogadro::TypeTraits< char > Generating XML output for class Avogadro::TypeTraits< double > Generating XML output for class Avogadro::TypeTraits< float > Generating XML output for class Avogadro::TypeTraits< int > Generating XML output for class Avogadro::TypeTraits< short > Generating XML output for class Avogadro::TypeTraits< unsigned char > Generating XML output for class Avogadro::TypeTraits< unsigned int > Generating XML output for class Avogadro::TypeTraits< unsigned short > Generating XML output for class Avogadro::QtGui::RWMolecule::UndoCommand Generating XML output for class Avogadro::Core::UnitCell Generating XML output for class Avogadro::Core::Variant Generating XML output for class Avogadro::Core::VariantMap Generating XML output for class Avogadro::QtGui::ViewFactory Generating XML output for class Avogadro::Rendering::Visitor Generating XML output for class Avogadro::Rendering::VolumeGeometry Generating XML output for class Avogadro::Rendering::VRMLVisitor Generating XML output for class vtkAvogadroActor Generating XML output for class Avogadro::VTK::vtkGLWidget Generating XML output for class Avogadro::Io::XyzFormat Generating XML output for namespace Avogadro Generating XML output for namespace Avogadro::Calc Generating XML output for namespace Avogadro::Core Generating XML output for namespace Avogadro::Core::internal Generating XML output for namespace Avogadro::Io Generating XML output for namespace Avogadro::MoleQueue Generating XML output for namespace Avogadro::MoleQueue::Ui Generating XML output for namespace Avogadro::QtGui Generating XML output for namespace Avogadro::QtGui::@112 Generating XML output for namespace Avogadro::QtGui::Ui Generating XML output for namespace Avogadro::QtGui::Utilities Generating XML output for namespace Avogadro::QtOpenGL Generating XML output for namespace Avogadro::QtPlugins Generating XML output for namespace Avogadro::QuantumIO Generating XML output for namespace Avogadro::Rendering Generating XML output for namespace Avogadro::VTK Generating XML output for namespace cppoptlib Generating XML output for namespace QtPlugins Generating XML output for namespace std Generating XML output for file chargemanager.h Generating XML output for file chargemodel.h Generating XML output for file defaultmodel.h Generating XML output for file energycalculator.h Generating XML output for file energymanager.h Generating XML output for file lennardjones.h Generating XML output for file lennardjonesdata.h Generating XML output for file angleiterator.h Generating XML output for file angletools.h Generating XML output for file array.h Generating XML output for file atom.h Generating XML output for file atomtyper-inline.h Generating XML output for file atomtyper.h Generating XML output for file atomutilities.h Generating XML output for file avogadrocore.h Generating XML output for file avospglib.h Generating XML output for file basisset.h Generating XML output for file bond.h Generating XML output for file color3f.h Generating XML output for file coordinateblockgenerator.h Generating XML output for file coordinateset.h Generating XML output for file crystaltools.h Generating XML output for file cube.h Generating XML output for file dihedraliterator.h Generating XML output for file elementdata.h Generating XML output for file elements.h Generating XML output for file gaussianset.h Generating XML output for file gaussiansettools.h Generating XML output for file graph.h Generating XML output for file layer.h Generating XML output for file layermanager.h Generating XML output for file matrix.h Generating XML output for file mdlvalence_p.h Generating XML output for file mesh.h Generating XML output for file core/molecule.h Generating XML output for file qtgui/molecule.h Generating XML output for file mutex.h Generating XML output for file nameatomtyper.h Generating XML output for file neighborperceiver.h Generating XML output for file residue.h Generating XML output for file residuecolors.h Generating XML output for file residuedata.h Generating XML output for file ringperceiver.h Generating XML output for file secondarystructure.h Generating XML output for file sharedmutex.h Generating XML output for file slaterset.h Generating XML output for file slatersettools.h Generating XML output for file spacegroupdata.h Generating XML output for file spacegroups.h Generating XML output for file symbolatomtyper.h Generating XML output for file types.h Generating XML output for file unitcell.h Generating XML output for file core/utilities.h Generating XML output for file qtgui/utilities.h Generating XML output for file variant-inline.h Generating XML output for file variant.h Generating XML output for file variantmap.h Generating XML output for file vector.h Generating XML output for file cjsonformat.h Generating XML output for file cmlformat.h Generating XML output for file cmsgpackformat.h Generating XML output for file dcdformat.h Generating XML output for file fileformat.h Generating XML output for file fileformatmanager.h Generating XML output for file gromacsformat.h Generating XML output for file hdf5dataformat.h Generating XML output for file lammpsformat.h Generating XML output for file mdlformat.h Generating XML output for file mmtfformat.h Generating XML output for file pdbformat.h Generating XML output for file trrformat.h Generating XML output for file turbomoleformat.h Generating XML output for file vaspformat.h Generating XML output for file xyzformat.h Generating XML output for file batchjob.h Generating XML output for file client.h Generating XML output for file jobobject.h Generating XML output for file jsonrpcclient.h Generating XML output for file inputgenerator.h Generating XML output for file inputgeneratordialog.h Generating XML output for file inputgeneratorwidget.h Generating XML output for file molequeuedialog.h Generating XML output for file molequeuemanager.h Generating XML output for file molequeuequeuelistmodel.h Generating XML output for file molequeuewidget.h Generating XML output for file backgroundfileformat.h Generating XML output for file colorbutton.h Generating XML output for file containerwidget.h Generating XML output for file customelementdialog.h Generating XML output for file elementdetail_p.h Generating XML output for file elementitem_p.h Generating XML output for file elementtranslator.h Generating XML output for file extensionplugin.h Generating XML output for file filebrowsewidget.h Generating XML output for file fileformatdialog.h Generating XML output for file generichighlighter.h Generating XML output for file hydrogentools.h Generating XML output for file insertfragmentdialog.h Generating XML output for file interfacescript.h Generating XML output for file interfacewidget.h Generating XML output for file jsonwidget.h Generating XML output for file layermodel.h Generating XML output for file meshgenerator.h Generating XML output for file moleculemodel.h Generating XML output for file multiviewwidget.h Generating XML output for file periodictablescene_p.h Generating XML output for file periodictableview.h Generating XML output for file persistentatom.h Generating XML output for file persistentbond.h Generating XML output for file pluginlayermanager.h Generating XML output for file pythonscript.h Generating XML output for file rwlayermanager.h Generating XML output for file rwmolecule.h Generating XML output for file rwmolecule_undo.h Generating XML output for file sceneplugin.h Generating XML output for file scenepluginmodel.h Generating XML output for file scriptloader.h Generating XML output for file sortfiltertreeproxymodel.h Generating XML output for file toolplugin.h Generating XML output for file viewfactory.h Generating XML output for file activeobjects.h Generating XML output for file glwidget.h Generating XML output for file qttextrenderstrategy.h Generating XML output for file gamessukout.h Generating XML output for file gamessus.h Generating XML output for file gaussiancube.h Generating XML output for file gaussianfchk.h Generating XML output for file genericoutput.h Generating XML output for file molden.h Generating XML output for file mopacaux.h Generating XML output for file nwchemjson.h Generating XML output for file nwchemlog.h Generating XML output for file orca.h Generating XML output for file ambientocclusionspheregeometry.h Generating XML output for file arcsector.h Generating XML output for file arcstrip.h Generating XML output for file arrowgeometry.h Generating XML output for file avogadrogl.h Generating XML output for file avogadrorendering.h Generating XML output for file beziergeometry.h Generating XML output for file bsplinegeometry.h Generating XML output for file bufferobject.h Generating XML output for file camera.h Generating XML output for file cartoongeometry.h Generating XML output for file curvegeometry.h Generating XML output for file cylindergeometry.h Generating XML output for file dashedlinegeometry.h Generating XML output for file drawable.h Generating XML output for file geometrynode.h Generating XML output for file geometryvisitor.h Generating XML output for file glrenderer.h Generating XML output for file glrendervisitor.h Generating XML output for file groupnode.h Generating XML output for file linestripgeometry.h Generating XML output for file meshgeometry.h Generating XML output for file node.h Generating XML output for file plyvisitor.h Generating XML output for file povrayvisitor.h Generating XML output for file primitive.h Generating XML output for file quad.h Generating XML output for file quadoutline.h Generating XML output for file scene.h Generating XML output for file shader.h Generating XML output for file shaderprogram.h Generating XML output for file solidpipeline.h Generating XML output for file spheregeometry.h Generating XML output for file textlabel2d.h Generating XML output for file textlabel3d.h Generating XML output for file textlabelbase.h Generating XML output for file textproperties.h Generating XML output for file textrenderstrategy.h Generating XML output for file texture2d.h Generating XML output for file transformnode.h Generating XML output for file visitor.h Generating XML output for file volumegeometry.h Generating XML output for file vrmlvisitor.h Generating XML output for file chartdialog.h Generating XML output for file chartwidget.h Generating XML output for file qvtkwidget.h Generating XML output for file vtkAvogadroActor.h Generating XML output for file vtkglwidget.h Generating XML output for file mainpage.dox Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/calc/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/client/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/core/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/docs/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/io/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/molequeue/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtgui/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/qtopengl/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/quantumio/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/rendering/ Generate XML output for dir /build/reproducible-path/avogadrolibs-1.99.0/avogadro/vtk/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 9404/65536 hits=40645 misses=11114 symbol lookup cache used 8577/65536 hits=71620 misses=8577 finished... make[5]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' Built target documentation make[4]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0' dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=cmake dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/avogadrolibs-1.99.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/avogadrolibs-1.99.0 -B/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/libgwavi.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/angletools.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/angleiterator.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/array.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/avogadrocore.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/color3f.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/coordinateset.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/matrix.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/types.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/utilities.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/vector.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/libAvogadroCore.so.1.99.0 -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/libAvogadroCore.so.1 -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/libAvogadroCore.so -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/atom.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/atomtyper.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/atomtyper-inline.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/atomutilities.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/basisset.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/bond.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/coordinateblockgenerator.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/crystaltools.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/cube.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/dihedraliterator.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/elements.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/gaussianset.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/gaussiansettools.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/graph.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/core/layer.h -- 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/build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/bpy-bipyridine.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/tmeda-tetramethylethylenediamine.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/phenanthroline.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/bpy-bipyridine.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/dithiolene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/dppe-1,2-bis(diphenylphosphino)ethane.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/oxalate.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/en-ethylenediamine.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/dithiolene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/acac-acetylacetonate.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/dppe-1,2-bis(diphenylphosphino)ethane.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/phenanthroline.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/groups.smi -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/tmeda-tetramethylethylenediamine.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/acac-acetylacetonate.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/dmpe-1,2-bis(dimethylphosphino)ethane.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/oxalate.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/ligands/bidentate/en-ethylenediamine.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/anthracene.png -- Installing: 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/build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/perylene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/phenyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/indene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/mesityl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/fluorene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/pentacene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/corranulene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/fluorene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/phenanthrene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/coronene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/phenalene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/chrysene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/biphenyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/tetracene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/azulene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/biphenyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/azulene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/perylene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/phenyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/trityl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/groups.smi -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/corranulene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/pentacene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/pyrene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/pyrene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/anthracene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/coronene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/indene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/aromatics/tetracene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/isopentyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/butyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/iso-propyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/isopentyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/butyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/iso-propyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/t-butyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/neopentyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/propyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/ethyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/hexyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/pentyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/octyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/octyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/heptyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/neopentyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/propyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/ethyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/groups.smi -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/hexyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/pentyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/t-butyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkanes/heptyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkynes -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkynes/propyne.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkynes/butadiyne.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkynes/butadiyne.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkynes/ethyne.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkynes/propyne.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkynes/ethyne.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkynes/groups.smi -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfine.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfinic_acid.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/episulfide.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/thiocyanate.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfonyl_acetamide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/episulfide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfonamide.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/thiol.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfonate.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/tosyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfoxide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/dithiocarboxylic_acid.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfinic_acid.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfonamide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfonyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/carbothioic_O-acid.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/disulfide.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/thionester.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfine.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/thiolester.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/carbothioic_S-acid.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/dithiocarbamate.cjson -- Installing: 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/build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/isothiocyanate.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfonate.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/dithiocarbamate.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/thioketone.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/thial.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfonyl_acetamide.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/sulfoxide.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/sulfur/thionester.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/bicyclics -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/bicyclics/adamantyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/bicyclics/norbornyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/bicyclics/norbornyl.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/bicyclics/adamantyl.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/bicyclics/groups.smi -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/carboxylate.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/ynone.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/anhydride.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/acid_chloride.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/aldehyde.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/peroxide.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/ether.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/ether.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/ketene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/epoxide.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/ester.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/acid_chloride.cjson -- Installing: 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/build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/carboxylate.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/amide.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/ketone.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/amide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/peroxide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/epoxide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/oxygen/ynone.cjson -- Installing: 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/build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/boron/boronic_ester.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/boron/boronic_acid.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/boron/borinic_ester.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/boron/borinic_acid.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/boron/borinic_ester.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/boron/groups.smi -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/boron/borinic_acid.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/boron/boronic_acid.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkenes -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkenes/hexatriene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkenes/ethylene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkenes/butadiene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkenes/hexatriene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkenes/butadiene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkenes/octatetraene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkenes/groups.smi -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkenes/ethylene.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/alkenes/octatetraene.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/nitrogen -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/nitrogen/imine.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/nitrogen/carbamate.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/nitrogen/acetamide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/nitrogen/nitro.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/nitrogen/azide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/nitrogen/formimidamide.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/nitrogen/amidine.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/nitrogen/nitrite.cjson -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/fragments/groups/nitrogen/oxime.cjson -- Installing: 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Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Br-Bromine.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Mo-Molybdenum.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/P-Phosphorus.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ga-Gallium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Rb-Rubidium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Cu-Copper.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/U-Uranium-alpha.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/V-Vanadium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Sm-Samarium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Cd-Cadmium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Rh-Rhodium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pu-Plutonium-alpha.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ca-Calcium-beta.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/N-Nitrogen.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pd-Palladium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/C-Diamond.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/S8-Sulfur-alpha.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Sc-Scandium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Rb-Rubidium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Tl-Thallium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Fe-Iron-gamma.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Na-Sodium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/I-Iodine.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Re-Rhenium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Fe-Iron-alpha.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Mn-Manganese-alpha.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Yb-Ytterbium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Sn-Tin-alpha.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Am-Americium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Fe-Iron-delta.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ac-Actinium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Mn-Manganese-gamma.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ga-Gallium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Y-Yttrium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/La-Lanthanum.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Cs-Cesium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ta-Tantalum.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/S6-Sulfur.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/As-Arsenic.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Sb-Antimony.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ir-Iridium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ti-Titanium-alpha.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ni-Nickel.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Tb-Terbium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/C-Graphite.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Sn-Tin-alpha.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Kr-Krypton.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Np-Neptunium-gamma.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pu-Plutonium-gamma.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/In-Indium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Tl-Thallium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ce-Cerium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Th-Thorium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Li-Lithium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ho-Holmium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/W-Tungsten.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ar-Argon.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/C-Graphite.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Mn-Manganese-delta.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Np-Neptunium-beta.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/La-Lanthanum.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/As-Arsenolamprite.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ti-Titanium-beta.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Os-Osmium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pu-Plutonium-epsilon.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Sn-Tin-beta.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Xe-Xenon.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Eu-Europium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ca-Calcium-beta.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/W-Tungsten.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/U-Uranium-gamma.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Np-Neptunium-beta.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Y-Yttrium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ca-Calcium-gamma.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/S8-Sulfur-beta.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Cd-Cadmium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pr-Praseodymium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Cl-Chlorine.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Mn-Manganese-alpha.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Fe-Iron-alpha.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Sn-Tin-beta.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ta-Tantalum.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ti-Titanium-alpha.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ir-Iridium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Re-Rhenium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Kr-Krypton.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Lu-Lutetium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ho-Holmium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pb-Lead.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Gd-Gadolinium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ba-Barium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Te-Tellurium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Au-Gold.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/As-Arsenic.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pd-Palladium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/B-Boron.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ac-Actinium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ge-Germanium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pr-Praseodymium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Se-Selenium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/P-Phosphorus-black.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Zn-Zinc.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pt-Platinum.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Sb-Antimony.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Sm-Samarium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Xe-Xenon.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Cl-Chlorine.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Zr-Zirconium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pb-Lead.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/S8-Sulfur-gamma.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Hf-Hafnium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Co-Cobalt.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Be-Beryllium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ar-Argon.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Th-Thorium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Al-Aluminum.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pt-Platinum.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ti-Titanium-beta.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Si-Silicon.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Be-Beryllium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pu-Plutonium-gamma.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/I-Iodine.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Li-Lithium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/P-Phosphorus.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Np-Neptunium-gamma.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Br-Bromine.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Nb-Niobium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pu-Plutonium-epsilon.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Dy-Dysprosium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Er-Erbium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Fe-Iron-gamma.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Yb-Ytterbium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Cs-Cesium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ba-Barium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ca-Calcium-gamma.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ag-Silver.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ru-Ruthenium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Eu-Europium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ru-Ruthenium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Nd-Neodymium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Al-Aluminum.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Nd-Neodymium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Mn-Manganese-delta.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/C-Diamond.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ne-Neon.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/N-Nitrogen.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Au-Gold.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/S8-Sulfur-beta.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Pu-Plutonium-alpha.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/He-Helium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ne-Neon.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Gd-Gadolinium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/K-Potassium.cif -- Installing: 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-- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Nb-Niobium.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Bi-Bismuth.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/He-Helium.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Ag-Silver.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/B-Boron.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/elements/Fe-Iron-beta.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/carbonates -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/carbonates/NaHCO3-Nahcolite.cif -- Installing: 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Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/clays -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/clays/Al4KSi2O12-Illite.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/clays/Lepidolite.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/clays/Al2Si2O9H4-Nacrite.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/clays/Al2Si2O9H4-Kaolinite.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/clays/Al4KSi2O12-Illite.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/clays/Fe2.25Cl0.5H2.75-Fougerite.cif -- Installing: 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Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/selenides/Sb2Se3-Antimonselite.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/selenides/2H-MoSe2.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/selenides/BiSe.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/selenides/BiSe.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/selenides/PbSe-Clausthalite.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/selenides/HgSe-Tiemannite.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/selenides/ZnSe.cif -- Installing: 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/build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/titanates/Mg2TiO4-Qandilite-tetrag.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/titanates/CaTiO3-Perovskite.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/plugin.json -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/SBS.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/RHO.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/UEI.png -- Installing: 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/build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/CAN.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/FAR.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/ZON.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/AFX.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/MTW.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/ETR.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/LTN.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/AST.cif -- Installing: 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/build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/PAR.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/KFI.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/AFN.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/LAU.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/AFR.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/AFR.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/DAC.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/OSI.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/AWO.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/EUO.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/CAS.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/LAU.png -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/CAS.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/AFY.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/SBS.cif -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/avogadro2/crystals/zeolites/NPO.png -- Installing: 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/build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/QuantumInput.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/ScriptCharges.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/scripts/charges/xtb.py -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/scripts/charges/antechamber.py -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/ScriptFileFormats.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/scripts/formatScripts/zyx.py -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/PluginDownloader.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/BallStick.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/CloseContacts.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/Force.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/Licorice.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/Meshes.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/NonCovalent.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/VanDerWaals.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/Wireframe.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/avogadro2/staticplugins/OverlayAxes.a -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/libAvogadroQtPlugins.so.1.99.0 -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/libAvogadroQtPlugins.so.1 -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/libAvogadroQtPlugins.so -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/qtplugins/pluginmanager.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/qtplugins/pluginfactory.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/qtplugins/avogadrostaticqtplugins.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/include/avogadro/qtplugins/avogadroqtpluginsexport.h -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/python3/dist-packages/avogadro/core.cpython-311-x86_64-linux-gnu.so -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/python3/dist-packages/avogadro/io.cpython-311-x86_64-linux-gnu.so -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/python3/dist-packages/avogadro/__init__.py -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/python3/dist-packages/avogadro/cjson.py -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/python3/dist-packages/avogadro/connect.py -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/doc/AvogadroLibs/avogadrolibs/README.md -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/doc/AvogadroLibs/avogadrolibs/CONTRIBUTING.md -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/share/doc/AvogadroLibs/avogadrolibs/LICENSE -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/avogadrolibs/AvogadroLibsConfig.cmake -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/avogadrolibs/AvogadroLibsConfigVersion.cmake -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/avogadrolibs/FindEigen3.cmake -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/avogadrolibs/Findlibmsym.cmake -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/avogadrolibs/AvogadroLibsTargets.cmake -- Installing: /build/reproducible-path/avogadrolibs-1.99.0/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/avogadrolibs/AvogadroLibsTargets-none.cmake make[1]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0' cp -r obj-x86_64-linux-gnu/bin debian/tmp/usr make[1]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0' debian/rules execute_after_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/avogadrolibs-1.99.0' cp -r obj-x86_64-linux-gnu/docs/html debian/tmp make[1]: Leaving directory '/build/reproducible-path/avogadrolibs-1.99.0' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_python3 -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dwz: debian/python3-avogadro/usr/lib/python3/dist-packages/avogadro/core.cpython-311-x86_64-linux-gnu.so: .debug_info section not present dwz: debian/python3-avogadro/usr/lib/python3/dist-packages/avogadro/io.cpython-311-x86_64-linux-gnu.so: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libavogadro2-1t64/usr/lib/x86_64-linux-gnu/libAvogadroRendering.so.1.99.0 was not linked against libGLX.so.0 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Provides field of package python3-avogadro: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'avogadro-utils' in '../avogadro-utils_1.99.0-5_amd64.deb'. dpkg-deb: building package 'python3-avogadro' in '../python3-avogadro_1.99.0-5_amd64.deb'. dpkg-deb: building package 'libavogadro2-1t64' in '../libavogadro2-1t64_1.99.0-5_amd64.deb'. dpkg-deb: building package 'libavogadro-data' in '../libavogadro-data_1.99.0-5_all.deb'. dpkg-deb: building package 'libavogadro-dev' in '../libavogadro-dev_1.99.0-5_amd64.deb'. dpkg-deb: building package 'libavogadro-doc' in '../libavogadro-doc_1.99.0-5_all.deb'. dpkg-deb: building package 'libavogadro2-1t64-dbgsym' in '../libavogadro2-1t64-dbgsym_1.99.0-5_amd64.deb'. dpkg-deb: building package 'avogadro-utils-dbgsym' in '../avogadro-utils-dbgsym_1.99.0-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../avogadrolibs_1.99.0-5_amd64.buildinfo dpkg-genchanges --build=binary -O../avogadrolibs_1.99.0-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3855290/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3855290/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3855290 and its subdirectories I: Current time: Sat Jun 1 07:21:07 +14 2024 I: pbuilder-time-stamp: 1717176067