I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 10 18:52:57 +14 2022 I: pbuilder-time-stamp: 1641790377 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.4.20-1.dsc] I: copying [./racon_1.4.20.orig.tar.gz] I: copying [./racon_1.4.20-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.Ay7wokxu/trustedkeys.kbx': General error gpgv: Signature made Wed Jan 20 00:04:56 2021 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./racon_1.4.20-1.dsc dpkg-source: info: extracting racon in racon-1.4.20 dpkg-source: info: unpacking racon_1.4.20.orig.tar.gz dpkg-source: info: unpacking racon_1.4.20-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3289031/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3289031/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3289031/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=a14eaef596fd41b6b81e18925d497c18 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3289031 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.CjyAK37vgj/pbuilderrc_f8XX --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.CjyAK37vgj/b2 --logfile b2/build.log racon_1.4.20-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-10-amd64 #1 SMP Debian 5.10.84-1 (2021-12-08) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 5 10:25 bash -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Jul 29 09:09 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 29 09:09 findmnt -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 8 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Jul 29 09:09 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 29 09:09 more -rwsr-xr-x 1 root root 55528 Jul 29 09:09 mount -rwxr-xr-x 1 root root 18664 Jul 29 09:09 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jan 10 18:55 sh -> bash lrwxrwxrwx 1 root root 4 Jan 7 23:24 sh.distrib -> dash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jul 29 09:09 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 29 09:09 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 29 09:09 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/3289031/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev (>= 3.0.12), libcereal-dev, libedlib-dev, libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev (>= 3.0.12); however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev; however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbioparser-dev{a} libbrotli1{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedlib-dev{a} libedlib0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 29.9 MB of archives. After unpacking 116 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 googletest all 1.10.0.20201025-1.1 [629 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libbioparser-dev all 3.0.12-1 [7168 B] Get: 54 http://deb.debian.org/debian bullseye/main amd64 rapidjson-dev all 1.1.0+dfsg2-7 [98.9 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libcereal-dev all 1.3.0+dfsg-1 [210 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libedlib0 amd64 1.2.6-1 [15.7 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libedlib-dev amd64 1.2.6-1 [17.9 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libgtest-dev amd64 1.10.0.20201025-1.1 [226 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libspoa7.0.0 amd64 4.0.7+ds-1+b1 [66.8 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libspoa-dev amd64 4.0.7+ds-1+b1 [7012 B] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libthread-pool-dev all 3.0.2-1 [4376 B] Get: 62 http://deb.debian.org/debian bullseye/main amd64 rampler amd64 2.0.0-1 [21.7 kB] Fetched 29.9 MB in 1s (22.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../05-libncurses6_6.2+20201114-2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../06-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... 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Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up googletest (1.10.0.20201025-1.1) ... Setting up rapidjson-dev (1.1.0+dfsg2-7) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:amd64 (1.40.0-2) ... Setting up rampler (2.0.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libthread-pool-dev (3.0.2-1) ... Setting up libspoa7.0.0:amd64 (4.0.7+ds-1+b1) ... Setting up autopoint (0.21-4) ... Setting up libedlib0 (1.2.6-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libbioparser-dev (3.0.12-1) ... Setting up librhash0:amd64 (1.4.1-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libgtest-dev:amd64 (1.10.0.20201025-1.1) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2+b1) ... Setting up libcereal-dev (1.3.0+dfsg-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libedlib-dev (1.2.6-1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libspoa-dev:amd64 (4.0.7+ds-1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package hostname: Name or service not known I: Running cd /build/racon-1.4.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.4.20-1_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.4.20-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/racon-1.4.20' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found GTest: /usr/lib/x86_64-linux-gnu/libgtest.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/racon-1.4.20/obj-x86_64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/racon-1.4.20' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/racon-1.4.20 -B/build/racon-1.4.20/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles /build/racon-1.4.20/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' cd /build/racon-1.4.20/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/racon-1.4.20 /build/racon-1.4.20 /build/racon-1.4.20/obj-x86_64-linux-gnu /build/racon-1.4.20/obj-x86_64-linux-gnu /build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake --color= make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' cd /build/racon-1.4.20/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/racon-1.4.20 /build/racon-1.4.20 /build/racon-1.4.20/obj-x86_64-linux-gnu /build/racon-1.4.20/obj-x86_64-linux-gnu /build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake --color= Dependee "/build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake" is newer than depender "/build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles/racon.dir/depend.internal". 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-DRACON_VERSION=\"v1.4.20\" -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-x86_64-linux-gnu/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/racon-1.4.20/src/window.cpp [ 85%] Building CXX object CMakeFiles/racon_test.dir/src/window.cpp.o /usr/bin/c++ -I/build/racon-1.4.20/src -I/build/racon-1.4.20/obj-x86_64-linux-gnu/config -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -o CMakeFiles/racon_test.dir/src/window.cpp.o -c /build/racon-1.4.20/src/window.cpp [ 92%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/racon_test.dir/test/racon_test.cpp.o CMakeFiles/racon_test.dir/src/logger.cpp.o CMakeFiles/racon_test.dir/src/polisher.cpp.o CMakeFiles/racon_test.dir/src/overlap.cpp.o CMakeFiles/racon_test.dir/src/sequence.cpp.o CMakeFiles/racon_test.dir/src/window.cpp.o -o bin/racon_test -lspoa -ledlib /usr/lib/x86_64-linux-gnu/libgtest_main.a -lz /usr/lib/x86_64-linux-gnu/libgtest.a -pthread [100%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/racon-1.4.20=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -rdynamic -pthread CMakeFiles/racon.dir/src/main.cpp.o CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o -o bin/racon -lspoa -ledlib -lz make[3]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' [100%] Built target racon_test make[3]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' [100%] Built target racon make[2]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/racon-1.4.20/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/racon-1.4.20' cd test && ../obj-*/bin/racon_test Running main() from /build/googletest-YnT0O3/googletest-1.10.0.20201025/googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (13 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (5 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (5 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (5 ms) [----------] 5 tests from RaconInitializeTest (30 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.021036 s [racon::Polisher::initialize] loaded sequences 0.924561 s [racon::Polisher::initialize] loaded overlaps 0.011630 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.111446 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.155383 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.155416 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.191385 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.191416 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.223385 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.235404 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.255399 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.279394 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.319389 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.323376 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.359378 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.403415 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.415388 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.455406 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.503392 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.543417 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.575400 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.623384 s [racon::Polisher::initialize] aligning overlaps [====================] 0.683411 s [racon::Polisher::initialize] transformed data into windows 0.002656 s [racon::Polisher::polish] generating consensus [=> ] 0.073245 s [racon::Polisher::polish] generating consensus [==> ] 0.141239 s [racon::Polisher::polish] generating consensus [===> ] 0.185254 s [racon::Polisher::polish] generating consensus [====> ] 0.197270 s [racon::Polisher::polish] generating consensus [=====> ] 0.233250 s [racon::Polisher::polish] generating consensus [======> ] 0.257260 s [racon::Polisher::polish] generating consensus [=======> ] 0.285240 s [racon::Polisher::polish] generating consensus [========> ] 0.321276 s [racon::Polisher::polish] generating consensus [=========> ] 0.374225 s [racon::Polisher::polish] generating consensus [==========> ] 0.425215 s [racon::Polisher::polish] generating consensus [===========> ] 0.497252 s [racon::Polisher::polish] generating consensus [============> ] 0.577246 s [racon::Polisher::polish] generating consensus [=============> ] 0.721253 s [racon::Polisher::polish] generating consensus [==============> ] 0.797230 s [racon::Polisher::polish] generating consensus [===============> ] 0.889246 s [racon::Polisher::polish] generating consensus [================> ] 0.968869 s [racon::Polisher::polish] generating consensus [=================> ] 1.049236 s [racon::Polisher::polish] generating consensus [==================> ] 1.109243 s [racon::Polisher::polish] generating consensus [===================>] 1.153209 s [racon::Polisher::polish] generating consensus [====================] 1.437312 s [racon::Polisher::] total = 3.155827 s [ OK ] RaconPolishingTest.ConsensusWithQualities (3169 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000670 s [racon::Polisher::initialize] loaded sequences 0.507473 s [racon::Polisher::initialize] loaded overlaps 0.000399 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.069834 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.110881 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.122876 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.166885 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.182872 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.210069 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.250889 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.286886 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.321402 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.360552 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.395199 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.430345 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.478858 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.494879 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.534894 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.586899 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.610040 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.655143 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.699252 s [racon::Polisher::initialize] aligning overlaps [====================] 0.739179 s [racon::Polisher::initialize] transformed data into windows 0.000610 s [racon::Polisher::polish] generating consensus [=> ] 0.112650 s [racon::Polisher::polish] generating consensus [==> ] 0.159141 s [racon::Polisher::polish] generating consensus [===> ] 0.219019 s [racon::Polisher::polish] generating consensus [====> ] 0.283054 s [racon::Polisher::polish] generating consensus [=====> ] 0.315033 s [racon::Polisher::polish] generating consensus [======> ] 0.335019 s [racon::Polisher::polish] generating consensus [=======> ] 0.388254 s [racon::Polisher::polish] generating consensus [========> ] 0.420971 s [racon::Polisher::polish] generating consensus [=========> ] 0.457559 s [racon::Polisher::polish] generating consensus [==========> ] 0.551135 s [racon::Polisher::polish] generating consensus [===========> ] 0.647049 s [racon::Polisher::polish] generating consensus [============> ] 0.751006 s [racon::Polisher::polish] generating consensus [=============> ] 0.887039 s [racon::Polisher::polish] generating consensus [==============> ] 1.035030 s [racon::Polisher::polish] generating consensus [===============> ] 1.123023 s [racon::Polisher::polish] generating consensus [================> ] 1.218871 s [racon::Polisher::polish] generating consensus [=================> ] 1.287106 s [racon::Polisher::polish] generating consensus [==================> ] 1.307054 s [racon::Polisher::polish] generating consensus [===================>] 1.399219 s [racon::Polisher::polish] generating consensus [====================] 1.711064 s [racon::Polisher::] total = 2.998229 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (3021 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000682 s [racon::Polisher::initialize] loaded sequences 0.086286 s [racon::Polisher::initialize] loaded overlaps 0.432078 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.009474 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.010018 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.010380 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.010832 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.011147 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.011384 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.011676 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.014405 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.014436 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.014444 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.014451 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.014522 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.014530 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.014543 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.014551 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.014559 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.014569 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.014581 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.014592 s [racon::Polisher::initialize] aligning overlaps [====================] 0.014616 s [racon::Polisher::initialize] transformed data into windows 0.002873 s [racon::Polisher::polish] generating consensus [=> ] 0.090353 s [racon::Polisher::polish] generating consensus [==> ] 0.118288 s [racon::Polisher::polish] generating consensus [===> ] 0.186330 s [racon::Polisher::polish] generating consensus [====> ] 0.228372 s [racon::Polisher::polish] generating consensus [=====> ] 0.245423 s [racon::Polisher::polish] generating consensus [======> ] 0.245466 s [racon::Polisher::polish] generating consensus [=======> ] 0.274346 s [racon::Polisher::polish] generating consensus [========> ] 0.294349 s [racon::Polisher::polish] generating consensus [=========> ] 0.323553 s [racon::Polisher::polish] generating consensus [==========> ] 0.394617 s [racon::Polisher::polish] generating consensus [===========> ] 0.450328 s [racon::Polisher::polish] generating consensus [============> ] 0.534423 s [racon::Polisher::polish] generating consensus [=============> ] 0.594328 s [racon::Polisher::polish] generating consensus [==============> ] 0.694280 s [racon::Polisher::polish] generating consensus [===============> ] 0.778399 s [racon::Polisher::polish] generating consensus [================> ] 0.802280 s [racon::Polisher::polish] generating consensus [=================> ] 0.862292 s [racon::Polisher::polish] generating consensus [==================> ] 0.886341 s [racon::Polisher::polish] generating consensus [===================>] 0.922327 s [racon::Polisher::polish] generating consensus [====================] 1.102401 s [racon::Polisher::] total = 1.674512 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (1697 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000663 s [racon::Polisher::initialize] loaded sequences 0.046757 s [racon::Polisher::initialize] loaded overlaps 0.062898 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.010661 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.010695 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.010703 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.010712 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.010720 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.018685 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.018721 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.018731 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.018741 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.018751 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.018762 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.018771 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.018782 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.018792 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.018802 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.018813 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.018824 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.018834 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.018844 s [racon::Polisher::initialize] aligning overlaps [====================] 0.018854 s [racon::Polisher::initialize] transformed data into windows 0.000655 s [racon::Polisher::polish] generating consensus [=> ] 0.059101 s [racon::Polisher::polish] generating consensus [==> ] 0.127102 s [racon::Polisher::polish] generating consensus [===> ] 0.167059 s [racon::Polisher::polish] generating consensus [====> ] 0.223125 s [racon::Polisher::polish] generating consensus [=====> ] 0.231096 s [racon::Polisher::polish] generating consensus [======> ] 0.259085 s [racon::Polisher::polish] generating consensus [=======> ] 0.307063 s [racon::Polisher::polish] generating consensus [========> ] 0.335098 s [racon::Polisher::polish] generating consensus [=========> ] 0.351078 s [racon::Polisher::polish] generating consensus [==========> ] 0.451073 s [racon::Polisher::polish] generating consensus [===========> ] 0.503077 s [racon::Polisher::polish] generating consensus [============> ] 0.571082 s [racon::Polisher::polish] generating consensus [=============> ] 0.803042 s [racon::Polisher::polish] generating consensus [==============> ] 0.859074 s [racon::Polisher::polish] generating consensus [===============> ] 0.967120 s [racon::Polisher::polish] generating consensus [================> ] 1.027166 s [racon::Polisher::polish] generating consensus [=================> ] 1.075083 s [racon::Polisher::polish] generating consensus [==================> ] 1.103065 s [racon::Polisher::polish] generating consensus [===================>] 1.143052 s [racon::Polisher::polish] generating consensus [====================] 1.353790 s [racon::Polisher::] total = 1.496663 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (1501 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000679 s [racon::Polisher::initialize] loaded sequences 0.050305 s [racon::Polisher::initialize] loaded overlaps 0.000336 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.033458 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.053449 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.065589 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.082599 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.097536 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.112711 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.131438 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.153505 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.169496 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.195513 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.208869 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.225504 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.255515 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.264626 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.285638 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.306837 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.325498 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.341482 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.365477 s [racon::Polisher::initialize] aligning overlaps [====================] 0.391419 s [racon::Polisher::initialize] transformed data into windows 0.002731 s [racon::Polisher::polish] generating consensus [=> ] 0.145673 s [racon::Polisher::polish] generating consensus [==> ] 0.145920 s [racon::Polisher::polish] generating consensus [===> ] 0.255186 s [racon::Polisher::polish] generating consensus [====> ] 0.255241 s [racon::Polisher::polish] generating consensus [=====> ] 0.294314 s [racon::Polisher::polish] generating consensus [======> ] 0.315176 s [racon::Polisher::polish] generating consensus [=======> ] 0.344228 s [racon::Polisher::polish] generating consensus [========> ] 0.391251 s [racon::Polisher::polish] generating consensus [=========> ] 0.429620 s [racon::Polisher::polish] generating consensus [==========> ] 0.514416 s [racon::Polisher::polish] generating consensus [===========> ] 0.583449 s [racon::Polisher::polish] generating consensus [============> ] 0.688883 s [racon::Polisher::polish] generating consensus [=============> ] 0.910776 s [racon::Polisher::polish] generating consensus [==============> ] 0.949577 s [racon::Polisher::polish] generating consensus [===============> ] 1.139202 s [racon::Polisher::polish] generating consensus [================> ] 1.139280 s [racon::Polisher::polish] generating consensus [=================> ] 1.296832 s [racon::Polisher::polish] generating consensus [==================> ] 1.296869 s [racon::Polisher::polish] generating consensus [===================>] 1.336691 s [racon::Polisher::polish] generating consensus [====================] 1.629391 s [racon::Polisher::] total = 2.097067 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (2110 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000725 s [racon::Polisher::initialize] loaded sequences 0.051658 s [racon::Polisher::initialize] loaded overlaps 0.000454 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.039162 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.066105 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.074097 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.094116 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.110118 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.122111 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.146142 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.164781 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.188333 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.211561 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.218108 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.239210 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.265028 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.279256 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.299529 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.323449 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.338142 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.357453 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.374954 s [racon::Polisher::initialize] aligning overlaps [====================] 0.403548 s [racon::Polisher::initialize] transformed data into windows 0.002714 s [racon::Polisher::polish] generating consensus [=> ] 0.034561 s [racon::Polisher::polish] generating consensus [==> ] 0.061539 s [racon::Polisher::polish] generating consensus [===> ] 0.089336 s [racon::Polisher::polish] generating consensus [====> ] 0.109625 s [racon::Polisher::polish] generating consensus [=====> ] 0.118518 s [racon::Polisher::polish] generating consensus [======> ] 0.129830 s [racon::Polisher::polish] generating consensus [=======> ] 0.142618 s [racon::Polisher::polish] generating consensus [========> ] 0.163723 s [racon::Polisher::polish] generating consensus [=========> ] 0.183704 s [racon::Polisher::polish] generating consensus [==========> ] 0.211704 s [racon::Polisher::polish] generating consensus [===========> ] 0.247744 s [racon::Polisher::polish] generating consensus [============> ] 0.280485 s [racon::Polisher::polish] generating consensus [=============> ] 0.335763 s [racon::Polisher::polish] generating consensus [==============> ] 0.398557 s [racon::Polisher::polish] generating consensus [===============> ] 0.421001 s [racon::Polisher::polish] generating consensus [================> ] 0.451876 s [racon::Polisher::polish] generating consensus [=================> ] 0.488070 s [racon::Polisher::polish] generating consensus [==================> ] 0.536051 s [racon::Polisher::polish] generating consensus [===================>] 0.587743 s [racon::Polisher::polish] generating consensus [====================] 0.715778 s [racon::Polisher::] total = 1.196275 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (1203 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.050044 s [racon::Polisher::initialize] loaded sequences 0.051108 s [racon::Polisher::initialize] loaded overlaps 0.088857 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.041983 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.061873 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.077872 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.093873 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.125880 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.125912 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.141910 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.149902 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.169878 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.197919 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.209887 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.229869 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.255088 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.274511 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.298695 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.319725 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.336104 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.365899 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.382596 s [racon::Polisher::initialize] aligning overlaps [====================] 0.433902 s [racon::Polisher::initialize] transformed data into windows 0.006040 s [racon::Polisher::polish] generating consensus [=> ] 0.031593 s [racon::Polisher::polish] generating consensus [==> ] 0.059577 s [racon::Polisher::polish] generating consensus [===> ] 0.087943 s [racon::Polisher::polish] generating consensus [====> ] 0.088651 s [racon::Polisher::polish] generating consensus [=====> ] 0.115033 s [racon::Polisher::polish] generating consensus [======> ] 0.124257 s [racon::Polisher::polish] generating consensus [=======> ] 0.146060 s [racon::Polisher::polish] generating consensus [========> ] 0.146286 s [racon::Polisher::polish] generating consensus [=========> ] 0.182703 s [racon::Polisher::polish] generating consensus [==========> ] 0.198569 s [racon::Polisher::polish] generating consensus [===========> ] 0.213949 s [racon::Polisher::polish] generating consensus [============> ] 0.222371 s [racon::Polisher::polish] generating consensus [=============> ] 0.237450 s [racon::Polisher::polish] generating consensus [==============> ] 0.239386 s [racon::Polisher::polish] generating consensus [===============> ] 0.281810 s [racon::Polisher::polish] generating consensus [================> ] 0.282032 s [racon::Polisher::polish] generating consensus [=================> ] 0.349668 s [racon::Polisher::polish] generating consensus [==================> ] 0.378567 s [racon::Polisher::polish] generating consensus [===================>] 0.413832 s [racon::Polisher::polish] generating consensus [====================] 0.423861 s [racon::Polisher::] total = 1.054644 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (1057 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.052235 s [racon::Polisher::initialize] loaded sequences 0.044169 s [racon::Polisher::initialize] loaded overlaps 0.010899 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.452299 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.763157 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.046894 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.438916 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.750710 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.015973 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.370185 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.791957 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.226815 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.630674 s [racon::Polisher::initialize] aligning overlaps [===========> ] 3.950661 s [racon::Polisher::initialize] aligning overlaps [============> ] 4.470666 s [racon::Polisher::initialize] aligning overlaps [=============> ] 5.114662 s [racon::Polisher::initialize] aligning overlaps [==============> ] 5.730693 s [racon::Polisher::initialize] aligning overlaps [===============> ] 6.567178 s [racon::Polisher::initialize] aligning overlaps [================> ] 7.366671 s [racon::Polisher::initialize] aligning overlaps [=================> ] 8.210699 s [racon::Polisher::initialize] aligning overlaps [==================> ] 8.890669 s [racon::Polisher::initialize] aligning overlaps [===================>] 9.426664 s [racon::Polisher::initialize] aligning overlaps [====================] 10.006539 s [racon::Polisher::initialize] transformed data into windows 0.084272 s [racon::Polisher::polish] generating consensus [=> ] 1.808256 s [racon::Polisher::polish] generating consensus [==> ] 3.077142 s [racon::Polisher::polish] generating consensus [===> ] 4.993227 s [racon::Polisher::polish] generating consensus [====> ] 6.005194 s [racon::Polisher::polish] generating consensus [=====> ] 7.137144 s [racon::Polisher::polish] generating consensus [======> ] 8.318062 s [racon::Polisher::polish] generating consensus [=======> ] 9.408856 s [racon::Polisher::polish] generating consensus [========> ] 10.285142 s [racon::Polisher::polish] generating consensus [=========> ] 11.324347 s [racon::Polisher::polish] generating consensus [==========> ] 12.561207 s [racon::Polisher::polish] generating consensus [===========> ] 13.591623 s [racon::Polisher::polish] generating consensus [============> ] 14.741135 s [racon::Polisher::polish] generating consensus [=============> ] 15.740345 s [racon::Polisher::polish] generating consensus [==============> ] 16.905630 s [racon::Polisher::polish] generating consensus [===============> ] 18.093111 s [racon::Polisher::polish] generating consensus [================> ] 18.873176 s [racon::Polisher::polish] generating consensus [=================> ] 20.254387 s [racon::Polisher::polish] generating consensus [==================> ] 21.457793 s [racon::Polisher::polish] generating consensus [===================>] 22.609132 s [racon::Polisher::polish] generating consensus [====================] 23.720808 s [racon::Polisher::] total = 33.923690 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (33927 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.023009 s [racon::Polisher::initialize] loaded sequences 0.022801 s [racon::Polisher::initialize] loaded overlaps 0.013816 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.487197 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.817941 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.113541 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.515604 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.835374 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.097536 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.436391 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.892868 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.343643 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.777365 s [racon::Polisher::initialize] aligning overlaps [===========> ] 4.105095 s [racon::Polisher::initialize] aligning overlaps [============> ] 4.575599 s [racon::Polisher::initialize] aligning overlaps [=============> ] 5.065233 s [racon::Polisher::initialize] aligning overlaps [==============> ] 5.552232 s [racon::Polisher::initialize] aligning overlaps [===============> ] 6.079940 s [racon::Polisher::initialize] aligning overlaps [================> ] 6.615587 s [racon::Polisher::initialize] aligning overlaps [=================> ] 7.071614 s [racon::Polisher::initialize] aligning overlaps [==================> ] 7.547610 s [racon::Polisher::initialize] aligning overlaps [===================>] 8.099579 s [racon::Polisher::initialize] aligning overlaps [====================] 8.657202 s [racon::Polisher::initialize] transformed data into windows 0.065560 s [racon::Polisher::polish] generating consensus [=> ] 2.737816 s [racon::Polisher::polish] generating consensus [==> ] 4.153792 s [racon::Polisher::polish] generating consensus [===> ] 5.809894 s [racon::Polisher::polish] generating consensus [====> ] 7.019009 s [racon::Polisher::polish] generating consensus [=====> ] 8.537981 s [racon::Polisher::polish] generating consensus [======> ] 10.179451 s [racon::Polisher::polish] generating consensus [=======> ] 11.960439 s [racon::Polisher::polish] generating consensus [========> ] 13.293788 s [racon::Polisher::polish] generating consensus [=========> ] 14.841807 s [racon::Polisher::polish] generating consensus [==========> ] 16.645790 s [racon::Polisher::polish] generating consensus [===========> ] 18.125834 s [racon::Polisher::polish] generating consensus [============> ] 19.725801 s [racon::Polisher::polish] generating consensus [=============> ] 21.085797 s [racon::Polisher::polish] generating consensus [==============> ] 22.585779 s [racon::Polisher::polish] generating consensus [===============> ] 23.991312 s [racon::Polisher::polish] generating consensus [================> ] 24.743232 s [racon::Polisher::polish] generating consensus [=================> ] 26.592628 s [racon::Polisher::polish] generating consensus [==================> ] 28.201097 s [racon::Polisher::polish] generating consensus [===================>] 29.676845 s [racon::Polisher::polish] generating consensus [====================] 31.035320 s [racon::Polisher::] total = 39.821338 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (39825 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.053298 s [racon::Polisher::initialize] loaded sequences 0.050686 s [racon::Polisher::initialize] loaded overlaps 0.039703 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.473407 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.792105 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.075626 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.471133 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.783894 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.058684 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.417750 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.861389 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.303279 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.716904 s [racon::Polisher::initialize] aligning overlaps [===========> ] 4.039730 s [racon::Polisher::initialize] aligning overlaps [============> ] 4.499150 s [racon::Polisher::initialize] aligning overlaps [=============> ] 4.959464 s [racon::Polisher::initialize] aligning overlaps [==============> ] 5.353904 s [racon::Polisher::initialize] aligning overlaps [===============> ] 5.829744 s [racon::Polisher::initialize] aligning overlaps [================> ] 6.275139 s [racon::Polisher::initialize] aligning overlaps [=================> ] 6.698768 s [racon::Polisher::initialize] aligning overlaps [==================> ] 7.183540 s [racon::Polisher::initialize] aligning overlaps [===================>] 7.671129 s [racon::Polisher::initialize] aligning overlaps [====================] 8.103900 s [racon::Polisher::initialize] transformed data into windows 0.083365 s [racon::Polisher::polish] generating consensus [=> ] 1.332649 s [racon::Polisher::polish] generating consensus [==> ] 2.272611 s [racon::Polisher::polish] generating consensus [===> ] 3.388679 s [racon::Polisher::polish] generating consensus [====> ] 4.268700 s [racon::Polisher::polish] generating consensus [=====> ] 5.313099 s [racon::Polisher::polish] generating consensus [======> ] 6.488620 s [racon::Polisher::polish] generating consensus [=======> ] 7.592697 s [racon::Polisher::polish] generating consensus [========> ] 8.434465 s [racon::Polisher::polish] generating consensus [=========> ] 9.446140 s [racon::Polisher::polish] generating consensus [==========> ] 10.668664 s [racon::Polisher::polish] generating consensus [===========> ] 11.729379 s [racon::Polisher::polish] generating consensus [============> ] 12.879887 s [racon::Polisher::polish] generating consensus [=============> ] 13.867664 s [racon::Polisher::polish] generating consensus [==============> ] 14.990854 s [racon::Polisher::polish] generating consensus [===============> ] 16.116665 s [racon::Polisher::polish] generating consensus [================> ] 16.748718 s [racon::Polisher::polish] generating consensus [=================> ] 17.980672 s [racon::Polisher::polish] generating consensus [==================> ] 19.120659 s [racon::Polisher::polish] generating consensus [===================>] 20.218567 s [racon::Polisher::polish] generating consensus [====================] 21.268703 s [racon::Polisher::] total = 29.604744 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (29610 ms) [----------] 10 tests from RaconPolishingTest (117120 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (117150 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/racon-1.4.20' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/racon-1.4.20/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/racon-1.4.20 -B/build/racon-1.4.20/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/racon-1.4.20/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/racon-1.4.20/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.4.20-1_amd64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.4.20-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../racon_1.4.20-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3289031/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3289031/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3289031 and its subdirectories I: Current time: Mon Jan 10 18:59:37 +14 2022 I: pbuilder-time-stamp: 1641790777