Diff of the two buildlogs: -- --- b1/build.log 2024-05-30 02:03:42.639571725 +0000 +++ b2/build.log 2024-05-30 02:07:07.694866070 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 1 20:23:21 -12 2025 -I: pbuilder-time-stamp: 1751444601 +I: Current time: Thu May 30 16:03:46 +14 2024 +I: pbuilder-time-stamp: 1717034626 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,51 +27,83 @@ dpkg-source: info: applying use-upstream-go-logger.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1200116/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4164052/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 30 02:03 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4164052/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4164052/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='13cafe73acb34fdf839e657cfee0ea5a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1200116' - PS1='# ' - PS2='> ' + INVOCATION_ID=0c5a3821cd634b4f87e43220a196687c + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4164052 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bhgkLPIo/pbuilderrc_YoKJ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bhgkLPIo/b1 --logfile b1/build.log seqkit_2.3.1+ds-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bhgkLPIo/pbuilderrc_lIGt --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bhgkLPIo/b2 --logfile b2/build.log seqkit_2.3.1+ds-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 30 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1200116/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 28 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/4164052/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -297,7 +329,7 @@ Get: 130 http://deb.debian.org/debian unstable/main amd64 libhts3t64 amd64 1.20+ds-1 [452 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2 [104 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.19.2-1+b1 [645 kB] -Fetched 121 MB in 1s (106 MB/s) +Fetched 121 MB in 1s (90.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19716 files and directories currently installed.) @@ -840,7 +872,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seqkit-2.3.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqkit_2.3.1+ds-2_source.changes +I: user script /srv/workspace/pbuilder/4164052/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/4164052/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seqkit-2.3.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqkit_2.3.1+ds-2_source.changes dpkg-buildpackage: info: source package seqkit dpkg-buildpackage: info: source version 2.3.1+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -859,46 +895,46 @@ dh_auto_configure -O--buildsystem=golang -O--builddirectory=build dh_auto_build -O--buildsystem=golang -O--builddirectory=build cd build && go install -trimpath -v -p 12 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd -internal/goarch +internal/goexperiment internal/unsafeheader +internal/godebugs +internal/goos +internal/goarch internal/coverage/rtcov +unicode/utf8 internal/itoa -internal/goexperiment -internal/goos -internal/godebugs -math/bits internal/cpu -internal/race -runtime/internal/atomic +math/bits runtime/internal/syscall +internal/race sync/atomic -unicode -cmp -log/internal +runtime/internal/atomic internal/abi internal/chacha8rand -unicode/utf8 runtime/internal/math -internal/nettrace runtime/internal/sys +unicode +cmp +log/internal +internal/nettrace image/color slices internal/goversion -internal/platform golang.org/x/image/math/f64 +internal/platform crypto/internal/alias crypto/subtle -internal/bytealg crypto/internal/boring/sig -math encoding unicode/utf16 github.com/klauspost/compress/internal/cpuinfo -container/list vendor/golang.org/x/crypto/cryptobyte/asn1 +container/list +internal/bytealg vendor/golang.org/x/crypto/internal/alias github.com/ulikunitz/xz/internal/hash image/color/palette +math github.com/rivo/uniseg runtime github.com/klauspost/compress @@ -906,215 +942,215 @@ internal/reflectlite sync internal/testlog -internal/singleflight internal/bisect +internal/singleflight runtime/cgo errors -internal/godebug sort +internal/godebug strconv -io -path -internal/intern internal/oserror +io internal/safefilepath -crypto/internal/nistec/fiat +syscall +path vendor/golang.org/x/net/dns/dnsmessage math/rand gonum.org/v1/plot/palette +crypto/internal/nistec/fiat +internal/intern container/heap github.com/shenwei356/bio/util -syscall strings bytes hash text/tabwriter internal/saferio +crypto/internal/randutil hash/crc32 hash/adler32 -crypto/internal/randutil github.com/shenwei356/util/randutil -hash/crc64 +reflect net/netip crypto crypto/rc4 -reflect +hash/crc64 +vendor/golang.org/x/text/transform +github.com/twotwotwo/sorts github.com/biogo/biogo/feat -go/build/constraint +bufio regexp/syntax +go/build/constraint html -bufio -vendor/golang.org/x/text/transform net/http/internal/ascii -github.com/twotwotwo/sorts github.com/twotwotwo/sorts/sortutil image -regexp -image/internal/imageutil internal/syscall/execenv time internal/syscall/unix +regexp +image/internal/imageutil image/draw image/jpeg -github.com/shenwei356/natsort golang.org/x/image/draw -io/fs +github.com/shenwei356/natsort +internal/fmtsort +encoding/binary internal/poll +io/fs context -encoding/binary -internal/fmtsort embed -os -encoding/base64 +golang.org/x/sys/unix crypto/md5 +golang.org/x/image/ccitt +crypto/cipher +encoding/base64 github.com/cespare/xxhash +crypto/internal/edwards25519/field github.com/klauspost/compress/internal/snapref -crypto/cipher -golang.org/x/image/ccitt -golang.org/x/sys/unix crypto/internal/nistec -crypto/internal/edwards25519/field +os +crypto/internal/boring +crypto/des encoding/pem +vendor/golang.org/x/crypto/chacha20 vendor/golang.org/x/crypto/internal/poly1305 index/suffixarray -crypto/des -vendor/golang.org/x/crypto/chacha20 -crypto/internal/boring -crypto/aes +crypto/internal/edwards25519 crypto/sha1 +crypto/aes crypto/sha512 crypto/hmac crypto/sha256 -github.com/shenwei356/bwt -crypto/internal/edwards25519 vendor/golang.org/x/crypto/hkdf +github.com/shenwei356/bwt crypto/ecdh +path/filepath fmt -internal/lazyregexp io/ioutil -path/filepath -vendor/golang.org/x/sys/cpu +internal/lazyregexp github.com/mattn/go-runewidth os/signal net +vendor/golang.org/x/sys/cpu os/exec vendor/golang.org/x/crypto/chacha20poly1305 -github.com/mitchellh/go-homedir internal/goroot +github.com/mitchellh/go-homedir +github.com/biogo/biogo/alphabet log -golang.org/x/image/math/fixed net/url -go/token -encoding/hex compress/flate +golang.org/x/image/math/fixed +encoding/hex +go/token go/doc/comment -golang.org/x/image/tiff/lzw -github.com/biogo/biogo/alphabet internal/buildcfg -encoding/gob -encoding/json github.com/golang/freetype/raster golang.org/x/image/font -github.com/biogo/biogo/seq -encoding/xml -compress/lzw +golang.org/x/image/tiff/lzw +encoding/gob +encoding/json go/scanner +encoding/xml golang.org/x/image/font/basicfont -image/gif +github.com/biogo/biogo/seq +compress/lzw compress/gzip +compress/zlib +image/gif +runtime/debug +go/ast +github.com/biogo/hts/bgzf github.com/biogo/biogo/io/seqio github.com/biogo/biogo/seq/linear -github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/align +github.com/biogo/biogo/io/seqio/fasta github.com/golang/freetype/truetype -compress/zlib -go/ast -github.com/biogo/hts/bgzf +github.com/shenwei356/seqkit/benchmark image/png gonum.org/v1/plot/vg/fonts -github.com/shenwei356/seqkit/benchmark -golang.org/x/image/tiff github.com/biogo/hts/bgzf/index -github.com/ajstarks/svgo -runtime/debug +github.com/mattn/go-isatty github.com/biogo/hts/internal +github.com/mattn/go-colorable +golang.org/x/term go/doc go/internal/typeparams -math/big -go/parser +golang.org/x/image/tiff github.com/biogo/hts/sam -github.com/iafan/cwalk -github.com/jung-kurt/gofpdf +github.com/ajstarks/svgo +go/parser github.com/fogleman/gg +golang.org/x/crypto/ssh/terminal +math/big +github.com/fsnotify/fsnotify +github.com/iafan/cwalk github.com/klauspost/compress/fse github.com/klauspost/compress/flate github.com/logrusorgru/aurora -github.com/mattn/go-isatty -golang.org/x/term -github.com/mattn/go-colorable -github.com/fsnotify/fsnotify -github.com/klauspost/compress/huff0 +github.com/jung-kurt/gofpdf github.com/pkg/errors vendor/golang.org/x/text/unicode/bidi -github.com/biogo/hts/bam -golang.org/x/crypto/ssh/terminal +github.com/klauspost/compress/huff0 vendor/golang.org/x/text/unicode/norm vendor/golang.org/x/net/http2/hpack -go/build mime +github.com/biogo/hts/bam mime/quotedprintable net/http/internal os/user github.com/shenwei356/util/byteutil -github.com/edsrzf/mmap-go -github.com/shenwei356/bio/seq vendor/golang.org/x/text/secure/bidirule +github.com/edsrzf/mmap-go github.com/shenwei356/bwt/fmi +github.com/shenwei356/util/pathutil +github.com/shenwei356/bio/seq +github.com/shenwei356/util/stringutil +gopkg.in/yaml.v2 +go/build +encoding/csv +github.com/shenwei356/bio/seqio/fai +flag +text/template/parse +github.com/tatsushid/go-prettytable +github.com/ulikunitz/xz/internal/xlog +vendor/golang.org/x/net/idna github.com/cznic/sortutil github.com/dustin/go-humanize crypto/rand crypto/elliptic crypto/internal/bigmod +github.com/klauspost/compress/zstd +github.com/klauspost/pgzip crypto/internal/boring/bbig encoding/asn1 crypto/ed25519 -github.com/klauspost/compress/zstd crypto/dsa -vendor/golang.org/x/net/idna -github.com/shenwei356/bio/seqio/fai -github.com/shenwei356/util/pathutil -github.com/shenwei356/util/stringutil -gopkg.in/yaml.v2 -encoding/csv -flag -github.com/klauspost/pgzip -crypto/rsa -text/template/parse +text/template +github.com/ulikunitz/xz/lzma gonum.org/v1/plot/vg -vendor/golang.org/x/crypto/cryptobyte -crypto/x509/pkix -github.com/tatsushid/go-prettytable -github.com/ulikunitz/xz/internal/xlog -crypto/ecdsa -gonum.org/v1/plot/vg/vgimg +crypto/rsa gonum.org/v1/plot/vg/vgeps +gonum.org/v1/plot/vg/vgimg gonum.org/v1/plot/vg/vgsvg -gonum.org/v1/plot/vg/vgpdf gonum.org/v1/plot/tools/bezier -text/template +vendor/golang.org/x/crypto/cryptobyte +crypto/x509/pkix +github.com/ulikunitz/xz github.com/smallfish/simpleyaml -github.com/ulikunitz/xz/lzma +crypto/ecdsa +gonum.org/v1/plot/vg/vgpdf gonum.org/v1/plot/vg/draw gonum.org/v1/plot -github.com/ulikunitz/xz gonum.org/v1/plot/plotter gonum.org/v1/plot/plotutil -github.com/bsipos/thist log/syslog +vendor/golang.org/x/net/http/httpproxy net/textproto crypto/x509 -vendor/golang.org/x/net/http/httpproxy github.com/spf13/pflag +github.com/bsipos/thist github.com/op/go-logging vendor/golang.org/x/net/http/httpguts mime/multipart @@ -1170,9 +1206,9 @@ dh_installdeb -O--buildsystem=golang -O--builddirectory=build dh_golang -O--buildsystem=golang -O--builddirectory=build dh_gencontrol -O--buildsystem=golang -O--builddirectory=build -dpkg-gencontrol: warning: package seqkit: substitution variable ${misc:Static-Built-Using} unused, but is defined dpkg-gencontrol: warning: Depends field of package seqkit-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package seqkit: substitution variable ${misc:Static-Built-Using} unused, but is defined +dpkg-gencontrol: warning: package seqkit: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--buildsystem=golang -O--builddirectory=build dh_builddeb -O--buildsystem=golang -O--builddirectory=build dpkg-deb: building package 'seqkit' in '../seqkit_2.3.1+ds-2_amd64.deb'. @@ -1185,12 +1221,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4164052/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4164052/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1200116 and its subdirectories -I: Current time: Tue Jul 1 20:26:42 -12 2025 -I: pbuilder-time-stamp: 1751444802 +I: removing directory /srv/workspace/pbuilder/4164052 and its subdirectories +I: Current time: Thu May 30 16:07:06 +14 2024 +I: pbuilder-time-stamp: 1717034826