Diff of the two buildlogs: -- --- b1/build.log 2024-06-03 20:59:10.917630196 +0000 +++ b2/build.log 2024-06-03 21:07:09.289261835 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jun 3 08:42:58 -12 2024 -I: pbuilder-time-stamp: 1717447378 +I: Current time: Mon Jul 7 17:22:18 +14 2025 +I: pbuilder-time-stamp: 1751858538 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: unpacking plastimatch_1.9.4+dfsg.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1521056/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3145059/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 7 03:22 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3145059/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3145059/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4b6fa4d750b34a428d27027f2956dbca' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1521056' - PS1='# ' - PS2='> ' + INVOCATION_ID=be106c7d959e461c88321b703cc98de2 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3145059 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qMzsqXv8/pbuilderrc_BvKa --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qMzsqXv8/b1 --logfile b1/build.log plastimatch_1.9.4+dfsg.1-2.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qMzsqXv8/pbuilderrc_dfJw --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qMzsqXv8/b2 --logfile b2/build.log plastimatch_1.9.4+dfsg.1-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 3 07:43 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1521056/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jul 5 14:05 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3145059/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -749,7 +781,7 @@ Get: 608 http://deb.debian.org/debian unstable/main amd64 libnifti-dev all 3.0.1-9.1 [8912 B] Get: 609 http://deb.debian.org/debian unstable/main amd64 libminc-dev amd64 2.4.06-2.1+b1 [70.0 kB] Get: 610 http://deb.debian.org/debian unstable/main amd64 libinsighttoolkit5-dev amd64 5.3.0-7+b1 [3232 kB] -Fetched 625 MB in 21s (29.9 MB/s) +Fetched 625 MB in 13s (49.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libglib2.0-0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19705 files and directories currently installed.) @@ -2692,8 +2724,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Jun 3 20:47:58 UTC 2024. -Universal Time is now: Mon Jun 3 20:47:58 UTC 2024. +Local time is now: Mon Jul 7 03:25:21 UTC 2025. +Universal Time is now: Mon Jul 7 03:25:21 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libcap2-bin (1:2.66-5) ... @@ -3426,7 +3458,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plastimatch_1.9.4+dfsg.1-2_source.changes +I: user script /srv/workspace/pbuilder/3145059/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3145059/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../plastimatch_1.9.4+dfsg.1-2_source.changes dpkg-buildpackage: info: source package plastimatch dpkg-buildpackage: info: source version 1.9.4+dfsg.1-2 dpkg-buildpackage: info: source distribution unstable @@ -3725,8 +3761,8 @@ -- Trying to find DCMTK expecting DCMTKConfig.cmake - ok -- Appending /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -- Not appending /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.2 --- Configuring done (13.9s) --- Generating done (0.7s) +-- Configuring done (6.6s) +-- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: @@ -3742,7 +3778,7 @@ -- Build files have been written to: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1' dh_auto_build - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/plastimatch-1.9.4+dfsg.1 -B/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -3756,9 +3792,9 @@ make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake "--color=" make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend -make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake "--color=" +make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29/CMakeFiles/inih.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' @@ -3771,64 +3807,64 @@ cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build -make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 0%] Building CXX object libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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libs/inih-r29/CMakeFiles/inih.dir/ini.c.o -[ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o -[ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o -[ 1%] Building C object libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -MF CMakeFiles/lbfgs.dir/lib/lbfgs.c.o.d -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c -[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o -[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o -[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o -[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -MD -MT src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o -MF CMakeFiles/plmclp.dir/plm_clp.cxx.o.d -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp/plm_clp.cxx +[ 0%] Building CXX object libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o +[ 0%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o +[ 0%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o -MF CMakeFiles/plmsys.dir/dir_list.cxx.o.d -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/dir_list.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/inih-r29/CMakeFiles/inih.dir/ini.c.o -MF CMakeFiles/inih.dir/ini.c.o.d -o CMakeFiles/inih.dir/ini.c.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29/ini.c -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-cpp -MD -MT libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o -MF CMakeFiles/devillard.dir/wirth.cpp.o.d -o CMakeFiles/devillard.dir/wirth.cpp.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard/wirth.cpp +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -MF CMakeFiles/lbfgs.dir/lib/lbfgs.c.o.d -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c +[ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o -MF CMakeFiles/specfun.dir/mpbdv.c.o.d -o CMakeFiles/specfun.dir/mpbdv.c.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/specfun/mpbdv.c +[ 1%] Building CXX object src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o +[ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu 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CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o.d -o CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress/nkidecompress.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o -MF CMakeFiles/plmsys.dir/dlib_threads.cxx.o.d -o CMakeFiles/plmsys.dir/dlib_threads.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/dlib_threads.cxx +[ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o -MF CMakeFiles/plmsys.dir/file_util.cxx.o.d -o CMakeFiles/plmsys.dir/file_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/file_util.cxx +[ 1%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -MD -MT src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o -MF CMakeFiles/plmclp.dir/plm_clp.cxx.o.d -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp/plm_clp.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o -MF CMakeFiles/plmsys.dir/logfile.cxx.o.d -o CMakeFiles/plmsys.dir/logfile.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/logfile.cxx +[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o -MF CMakeFiles/plmsys.dir/option_range.cxx.o.d -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/option_range.cxx +[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o +[ 2%] Building CXX object libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o +[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o -MF CMakeFiles/plmsys.dir/path_util.cxx.o.d -o CMakeFiles/plmsys.dir/path_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/path_util.cxx -[ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o -[ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o +[ 2%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o -MF CMakeFiles/plmsys.dir/plm_endian.cxx.o.d -o CMakeFiles/plmsys.dir/plm_endian.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_endian.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -MF CMakeFiles/plmsys.dir/plm_fwrite.cxx.o.d -o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_fwrite.cxx -[ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o -[ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o -[ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o -MF CMakeFiles/plmsys.dir/plm_sleep.cxx.o.d -o CMakeFiles/plmsys.dir/plm_sleep.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_sleep.cxx +[ 3%] Building C object libs/inih-r29/CMakeFiles/inih.dir/ini.c.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-cpp -MD -MT libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o -MF CMakeFiles/devillard.dir/wirth.cpp.o.d -o CMakeFiles/devillard.dir/wirth.cpp.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard/wirth.cpp cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o -MF CMakeFiles/plmsys.dir/plm_timer.cxx.o.d -o CMakeFiles/plmsys.dir/plm_timer.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/plm_timer.cxx +[ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT libs/inih-r29/CMakeFiles/inih.dir/ini.c.o -MF CMakeFiles/inih.dir/ini.c.o.d -o CMakeFiles/inih.dir/ini.c.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29/ini.c cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o -MF CMakeFiles/plmsys.dir/print_and_exit.cxx.o.d -o CMakeFiles/plmsys.dir/print_and_exit.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/print_and_exit.cxx [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o -MF CMakeFiles/plmsys.dir/string_util.cxx.o.d -o CMakeFiles/plmsys.dir/string_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/string_util.cxx [ 4%] Building C object src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o -MF CMakeFiles/plmsys.dir/string_util.cxx.o.d -o CMakeFiles/plmsys.dir/string_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/string_util.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cc -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/usr/include/hdf5/serial -I/usr/include/gdcm-3.0 -I/usr/include/ITK-5.3 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -MD -MT src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o -MF CMakeFiles/plmsys.dir/delayload_legacy.c.o.d -o CMakeFiles/plmsys.dir/delayload_legacy.c.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys/delayload_legacy.c [ 4%] Linking CXX static library ../../libdevillard.a cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -P CMakeFiles/devillard.dir/cmake_clean_target.cmake @@ -3840,14 +3876,14 @@ [ 4%] Linking CXX static library ../../libnkidecompress.a cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -E cmake_link_script CMakeFiles/nkidecompress.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o [ 4%] Linking C static library ../../libspecfun.a cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake -/usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o /usr/bin/ranlib ../../libnkidecompress.a -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -/usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 [ 4%] Built target nkidecompress +/usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o /usr/bin/ranlib ../../libspecfun.a make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [ 4%] Built target specfun @@ -3877,97 +3913,117 @@ make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 4%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o [ 4%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o +[ 4%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o [ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o -[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o -[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o -[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o -[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o -MF CMakeFiles/plmbase.dir/aperture.cxx.o.d -o CMakeFiles/plmbase.dir/aperture.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/aperture.cxx -[ 5%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o -[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o -[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o -MF CMakeFiles/plmbase.dir/beam_geometry.cxx.o.d -o CMakeFiles/plmbase.dir/beam_geometry.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/beam_geometry.cxx [ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o -MF CMakeFiles/plmbase.dir/bspline_header.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_header.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_header.cxx +[ 6%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o [ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o -[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o +[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o +[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o +[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o -MF CMakeFiles/plmbase.dir/astroid_dose.cxx.o.d -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/astroid_dose.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/beam_geometry.cxx.o -MF CMakeFiles/plmbase.dir/beam_geometry.cxx.o.d -o CMakeFiles/plmbase.dir/beam_geometry.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/beam_geometry.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o -MF CMakeFiles/plmbase.dir/bspline_header.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_header.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_header.cxx +[ 7%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -MF CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_interpolate.cxx -[ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o -MF CMakeFiles/plmbase.dir/bspline_warp.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_warp.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o -MF CMakeFiles/plmbase.dir/bspline_xform.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_xform.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_xform.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o -MF CMakeFiles/plmbase.dir/bspline_warp.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_warp.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -MF CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o.d -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/bspline_xform_legacy.cxx +[ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o -MF CMakeFiles/plmbase.dir/cxt_extract.cxx.o.d -o CMakeFiles/plmbase.dir/cxt_extract.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/cxt_extract.cxx +[ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o -MF CMakeFiles/plmbase.dir/cxt_io.cxx.o.d -o CMakeFiles/plmbase.dir/cxt_io.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/cxt_io.cxx +[ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o -MF CMakeFiles/plmbase.dir/dicom_probe.cxx.o.d -o CMakeFiles/plmbase.dir/dicom_probe.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dicom_probe.cxx +[ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o +[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o +[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o +[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o +[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o -MF CMakeFiles/plmbase.dir/dicom_util.cxx.o.d -o CMakeFiles/plmbase.dir/dicom_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dicom_util.cxx -[ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o -MF CMakeFiles/plmbase.dir/direction_cosines.cxx.o.d -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/direction_cosines.cxx -[ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o +[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o +[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o -MF CMakeFiles/plmbase.dir/direction_matrices.cxx.o.d -o CMakeFiles/plmbase.dir/direction_matrices.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/direction_matrices.cxx +[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o +[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o -MF CMakeFiles/plmbase.dir/exchkeys.cxx.o.d -o CMakeFiles/plmbase.dir/exchkeys.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/exchkeys.cxx -[ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o -MF CMakeFiles/plmbase.dir/image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/image_stats.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/image_stats.cxx -[ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o -MF CMakeFiles/plmbase.dir/float_pair_list.cxx.o.d -o CMakeFiles/plmbase.dir/float_pair_list.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/float_pair_list.cxx -[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o -[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o +[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o -MF CMakeFiles/plmbase.dir/gaussian.cxx.o.d -o CMakeFiles/plmbase.dir/gaussian.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/gaussian.cxx +[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o +[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o -MF CMakeFiles/plmbase.dir/hnd_io.cxx.o.d -o CMakeFiles/plmbase.dir/hnd_io.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/hnd_io.cxx -[ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o +[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o -MF CMakeFiles/plmbase.dir/image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/image_stats.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/image_stats.cxx +[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o -MF CMakeFiles/plmbase.dir/interpolate.cxx.o.d -o CMakeFiles/plmbase.dir/interpolate.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/interpolate.cxx -[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o -MF CMakeFiles/plmbase.dir/itk_bbox.cxx.o.d -o CMakeFiles/plmbase.dir/itk_bbox.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_bbox.cxx -[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o +[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o -MF CMakeFiles/plmbase.dir/itk_directions.cxx.o.d -o CMakeFiles/plmbase.dir/itk_directions.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_directions.cxx -[ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o -MF CMakeFiles/plmbase.dir/itk_image.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image.cxx -[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o +[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o +[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o +[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o +[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_accumulate.cxx -[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o +[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_cast.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_cast.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_cast.cxx -[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_clone.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_clone.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_clone.cxx -[ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o +[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_create.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_create.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_create.cxx -[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o +[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_header_compare.cxx -[ 12%] Linking CXX static library libplmclp.a -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -P CMakeFiles/plmclp.dir/cmake_clean_target.cmake -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmclp.dir/link.txt --verbose=1 -/usr/bin/ar qc libplmclp.a CMakeFiles/plmclp.dir/plm_clp.cxx.o -/usr/bin/ranlib libplmclp.a -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 12%] Built target plmclp -[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o +[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_char.cxx -[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx -[ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx -[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx -[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_int64.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx -[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx -[ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx -[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx -[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_uint64.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx -[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_vec.cxx +[ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_region.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_region.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_region.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_origin.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_origin.cxx -[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_region.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_region.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_region.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_save.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_save.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_save.cxx +[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_shift_scale.cxx +[ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_stats.cxx +[ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o -MF CMakeFiles/plmbase.dir/itk_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/itk_metadata.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_metadata.cxx +[ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o -MF CMakeFiles/plmbase.dir/itk_pointset.cxx.o.d -o CMakeFiles/plmbase.dir/itk_pointset.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_pointset.cxx +[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o -MF CMakeFiles/plmbase.dir/itk_resample.cxx.o.d -o CMakeFiles/plmbase.dir/itk_resample.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_resample.cxx +[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -MF CMakeFiles/plmbase.dir/itk_volume_header.cxx.o.d -o CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_volume_header.cxx +[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o -MF CMakeFiles/plmbase.dir/itk_warp.cxx.o.d -o CMakeFiles/plmbase.dir/itk_warp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_warp.cxx +[ 17%] Linking CXX static library libplmclp.a +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -P CMakeFiles/plmclp.dir/cmake_clean_target.cmake +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmclp.dir/link.txt --verbose=1 +/usr/bin/ar qc libplmclp.a CMakeFiles/plmclp.dir/plm_clp.cxx.o +/usr/bin/ranlib libplmclp.a +[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o -MF CMakeFiles/plmbase.dir/mc_dose.cxx.o.d -o CMakeFiles/plmbase.dir/mc_dose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/mc_dose.cxx +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 17%] Built target plmclp +[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o -MF CMakeFiles/plmbase.dir/metadata.cxx.o.d -o CMakeFiles/plmbase.dir/metadata.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/metadata.cxx +[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o -MF CMakeFiles/plmbase.dir/mha_io.cxx.o.d -o CMakeFiles/plmbase.dir/mha_io.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/mha_io.cxx In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_char.cxx:6: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = char; typename itk::Image::Pointer = itk::SmartPointer >]': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_char.cxx:21:27: required from here @@ -3980,18 +4036,12 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx:6: -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = int; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx:20:27: required from here -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] - 140 | "Error: unhandled file type for loading image (%d) %s\n", - | ~^ - | | - | int - 141 | componentType, fname); - | ~~~~~~~~~~~~~ - | | - | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} +[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o -MF CMakeFiles/plmbase.dir/nki_io.cxx.o.d -o CMakeFiles/plmbase.dir/nki_io.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/nki_io.cxx +[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o -MF CMakeFiles/plmbase.dir/parameter_parser.cxx.o.d -o CMakeFiles/plmbase.dir/parameter_parser.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/parameter_parser.cxx +[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o -MF CMakeFiles/plmbase.dir/plm_file_format.cxx.o.d -o CMakeFiles/plmbase.dir/plm_file_format.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx:6: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = short unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx:20:27: required from here @@ -4004,9 +4054,9 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx:6: -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = double; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx:20:27: required from here +In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx:6: +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned char; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx:20:27: required from here /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ @@ -4016,9 +4066,9 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx:6: -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = short int; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx:20:27: required from here +In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx:6: +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = long int; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx:20:27: required from here /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ @@ -4028,9 +4078,9 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx:6: -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned char; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx:20:27: required from here +In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx:6: +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = double; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx:20:27: required from here /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ @@ -4040,9 +4090,9 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx:6: -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = long int; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int64.cxx:20:27: required from here +In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx:6: +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = int; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx:20:27: required from here /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ @@ -4052,9 +4102,11 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx:6: -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = long unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx:20:27: required from here +[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o -MF CMakeFiles/plmbase.dir/plm_image.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image.cxx +In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx:6: +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx:20:27: required from here /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] 140 | "Error: unhandled file type for loading image (%d) %s\n", | ~^ @@ -4064,6 +4116,8 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} +[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_convert.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_convert.cxx In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx:6: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = float; typename itk::Image::Pointer = itk::SmartPointer >]': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx:20:27: required from here @@ -4076,56 +4130,10 @@ | ~~~~~~~~~~~~~ | | | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx:6: -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx:20:27: required from here -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] - 140 | "Error: unhandled file type for loading image (%d) %s\n", - | ~^ - | | - | int - 141 | componentType, fname); - | ~~~~~~~~~~~~~ - | | - | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} -[ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_shift_scale.cxx -[ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -MF CMakeFiles/plmbase.dir/itk_image_stats.cxx.o.d -o CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_stats.cxx -[ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o -MF CMakeFiles/plmbase.dir/itk_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/itk_metadata.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_metadata.cxx -[ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o -MF CMakeFiles/plmbase.dir/itk_pointset.cxx.o.d -o CMakeFiles/plmbase.dir/itk_pointset.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_pointset.cxx -[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o -MF CMakeFiles/plmbase.dir/itk_resample.cxx.o.d -o CMakeFiles/plmbase.dir/itk_resample.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_resample.cxx -[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -MF CMakeFiles/plmbase.dir/itk_volume_header.cxx.o.d -o CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_volume_header.cxx -[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o -MF CMakeFiles/plmbase.dir/itk_warp.cxx.o.d -o CMakeFiles/plmbase.dir/itk_warp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_warp.cxx -[ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o -MF CMakeFiles/plmbase.dir/mc_dose.cxx.o.d -o CMakeFiles/plmbase.dir/mc_dose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/mc_dose.cxx -[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o -MF CMakeFiles/plmbase.dir/metadata.cxx.o.d -o CMakeFiles/plmbase.dir/metadata.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/metadata.cxx -[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o -MF CMakeFiles/plmbase.dir/mha_io.cxx.o.d -o CMakeFiles/plmbase.dir/mha_io.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/mha_io.cxx -[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o -MF CMakeFiles/plmbase.dir/nki_io.cxx.o.d -o CMakeFiles/plmbase.dir/nki_io.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/nki_io.cxx -[ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o -MF CMakeFiles/plmbase.dir/parameter_parser.cxx.o.d -o CMakeFiles/plmbase.dir/parameter_parser.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/parameter_parser.cxx -[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o -MF CMakeFiles/plmbase.dir/plm_file_format.cxx.o.d -o CMakeFiles/plmbase.dir/plm_file_format.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx -[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o -MF CMakeFiles/plmbase.dir/plm_image.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image.cxx -[ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_convert.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_convert.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_header.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_header.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_header.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_set.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_set.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_set.cxx -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx: In function 'Plm_file_format plm_file_format_deduce(const char*)': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx:97:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fgets (line, MAX_LINE, fp); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_type.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_type.cxx.o -MF CMakeFiles/plmbase.dir/plm_image_type.cxx.o.d -o CMakeFiles/plmbase.dir/plm_image_type.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_image_type.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_warp.cxx.o @@ -4134,26 +4142,34 @@ cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o -MF CMakeFiles/plmbase.dir/pointset.cxx.o.d -o CMakeFiles/plmbase.dir/pointset.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o -MF CMakeFiles/plmbase.dir/pointset_warp.cxx.o.d -o CMakeFiles/plmbase.dir/pointset_warp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset_warp.cxx +In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx:6: +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = short int; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx:20:27: required from here +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] + 140 | "Error: unhandled file type for loading image (%d) %s\n", + | ~^ + | | + | int + 141 | componentType, fname); + | ~~~~~~~~~~~~~ + | | + | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o -MF CMakeFiles/plmbase.dir/proj_image.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx: In member function 'void Pointset::load_fcsv(const char*) [with T = Labeled_point]': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 65 | fgets (s, 1024, fp); - | ~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx: In member function 'void Pointset::load_fcsv(const char*) [with T = Point]': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx: In function 'void pfm_load(Proj_image*, const char*)': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:175:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 175 | fgets (buf, 1024, fp); - | ~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:183:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 183 | fgets (buf, 1024, fp); - | ~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:190:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 190 | fgets (buf, 1024, fp); - | ~~~~~~^~~~~~~~~~~~~~~ [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -MF CMakeFiles/plmbase.dir/proj_image_dir.cxx.o.d -o CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image_dir.cxx +In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx:6: +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx: In instantiation of 'typename itk::Image::Pointer itk_image_load_any(const char*, Plm_image_type*, U) [with U = long unsigned int; typename itk::Image::Pointer = itk::SmartPointer >]': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load_uint64.cxx:20:27: required from here +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_load.txx:140:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'itk::ImageIOBase::IOComponentType' {aka 'itk::CommonEnums::IOComponent'} [-Wformat=] + 140 | "Error: unhandled file type for loading image (%d) %s\n", + | ~^ + | | + | int + 141 | componentType, fname); + | ~~~~~~~~~~~~~ + | | + | itk::ImageIOBase::IOComponentType {aka itk::CommonEnums::IOComponent} [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o -MF CMakeFiles/plmbase.dir/proj_matrix.cxx.o.d -o CMakeFiles/plmbase.dir/proj_matrix.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_matrix.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_volume.cxx.o @@ -4162,10 +4178,66 @@ cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/pwlut.cxx.o -MF CMakeFiles/plmbase.dir/pwlut.cxx.o.d -o CMakeFiles/plmbase.dir/pwlut.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pwlut.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -MF CMakeFiles/plmbase.dir/rasterize_slice.cxx.o.d -o CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rasterize_slice.cxx +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx: In function 'void pfm_load(Proj_image*, const char*)': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:175:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 175 | fgets (buf, 1024, fp); + | ~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:183:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 183 | fgets (buf, 1024, fp); + | ~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_image.cxx:190:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 190 | fgets (buf, 1024, fp); + | ~~~~~~^~~~~~~~~~~~~~~ [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o -MF CMakeFiles/plmbase.dir/rasterizer.cxx.o.d -o CMakeFiles/plmbase.dir/rasterizer.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rasterizer.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o -MF CMakeFiles/plmbase.dir/raw_pointset.cxx.o.d -o CMakeFiles/plmbase.dir/raw_pointset.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx +[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ray_trace_probe.cxx +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx: In member function 'void Pointset::load_fcsv(const char*) [with T = Labeled_point]': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 65 | fgets (s, 1024, fp); + | ~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx: In member function 'void Pointset::load_fcsv(const char*) [with T = Point]': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/pointset.cxx:65:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] +[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ray_trace_uniform.cxx +[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o -MF CMakeFiles/plmbase.dir/rpl_volume.cxx.o.d -o CMakeFiles/plmbase.dir/rpl_volume.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx +[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -MF CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o.d -o CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume_lut.cxx +[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -MF CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o.d -o CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtds_dcmtk.cxx +[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study.cxx.o -MF CMakeFiles/plmbase.dir/rt_study.cxx.o.d -o CMakeFiles/plmbase.dir/rt_study.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rt_study.cxx +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function 'Raw_pointset* pointset_load_fcsv(const char*)': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx:81:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 81 | fgets (s, 1024, fp); + | ~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function 'Raw_pointset* pointset_load_txt(const char*)': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx:135:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 135 | fgets (s, 1024, fp); + | ~~~~~~^~~~~~~~~~~~~ +[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -MF CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rt_study_metadata.cxx +[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o -MF CMakeFiles/plmbase.dir/rtss.cxx.o.d -o CMakeFiles/plmbase.dir/rtss.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtss.cxx +[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o -MF CMakeFiles/plmbase.dir/rtog_io.cxx.o.d -o CMakeFiles/plmbase.dir/rtog_io.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtog_io.cxx +[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o -MF CMakeFiles/plmbase.dir/rtss_contour.cxx.o.d -o CMakeFiles/plmbase.dir/rtss_contour.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtss_contour.cxx +[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o -MF CMakeFiles/plmbase.dir/rtss_roi.cxx.o.d -o CMakeFiles/plmbase.dir/rtss_roi.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtss_roi.cxx +[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o -MF CMakeFiles/plmbase.dir/rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtplan.cxx +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx: In function 'Plm_file_format plm_file_format_deduce(const char*)': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/plm_file_format.cxx:97:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fgets (line, MAX_LINE, fp); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -MF CMakeFiles/plmbase.dir/rtplan_beam.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtplan_beam.cxx +[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -MF CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtplan_control_pt.cxx /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_volume.cxx: In member function 'void Proj_volume::save_header(const char*)': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/proj_volume.cxx:299:30: warning: format '%d' expects argument of type 'int', but argument 3 has type 'plm_long' {aka 'long int'} [-Wformat=] 299 | fprintf (fp, "num_steps=%d\n", d_ptr->num_steps); @@ -4193,59 +4265,10 @@ | ~~~~~~~~~~~~~~~~~~~ | | | plm_long {aka long int} -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function 'Raw_pointset* pointset_load_fcsv(const char*)': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx:81:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 81 | fgets (s, 1024, fp); - | ~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function 'Raw_pointset* pointset_load_txt(const char*)': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/raw_pointset.cxx:135:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 135 | fgets (s, 1024, fp); - | ~~~~~~^~~~~~~~~~~~~ -[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ray_trace_probe.cxx -[ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ray_trace_uniform.cxx -[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o -MF CMakeFiles/plmbase.dir/rpl_volume.cxx.o.d -o CMakeFiles/plmbase.dir/rpl_volume.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx -[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -MF CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o.d -o CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume_lut.cxx -[ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -MF 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -MF CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rt_study_metadata.cxx -[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o -MF CMakeFiles/plmbase.dir/rtog_io.cxx.o.d -o CMakeFiles/plmbase.dir/rtog_io.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtog_io.cxx -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx: In member function 'void Rpl_volume::apply_beam_modifiers()': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx:1471:22: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] - 1471 | printf ("ires = %d %d\n", ires[0], ires[1]); - | ~^ ~~~~~~~ - | | | - | int long int - | %ld -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx:1471:25: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] - 1471 | printf ("ires = %d %d\n", ires[0], ires[1]); - | ~^ ~~~~~~~ - | | | - | int long int - | %ld -[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o -MF CMakeFiles/plmbase.dir/rtss.cxx.o.d -o CMakeFiles/plmbase.dir/rtss.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtss.cxx -[ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o -MF CMakeFiles/plmbase.dir/rtss_contour.cxx.o.d -o CMakeFiles/plmbase.dir/rtss_contour.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtss_contour.cxx -[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o -MF CMakeFiles/plmbase.dir/rtss_roi.cxx.o.d -o CMakeFiles/plmbase.dir/rtss_roi.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtss_roi.cxx -[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o -MF CMakeFiles/plmbase.dir/rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtplan.cxx -[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -MF CMakeFiles/plmbase.dir/rtplan_beam.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtplan_beam.cxx -[ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -MF CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o.d -o CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rtplan_control_pt.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o -MF CMakeFiles/plmbase.dir/segmentation.cxx.o.d -o CMakeFiles/plmbase.dir/segmentation.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/segmentation.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_extract.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/slice_extract.cxx.o -MF CMakeFiles/plmbase.dir/slice_extract.cxx.o.d -o CMakeFiles/plmbase.dir/slice_extract.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/slice_extract.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o -MF CMakeFiles/plmbase.dir/segmentation.cxx.o.d -o CMakeFiles/plmbase.dir/segmentation.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/segmentation.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_list.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/slice_list.cxx.o -MF CMakeFiles/plmbase.dir/slice_list.cxx.o.d -o CMakeFiles/plmbase.dir/slice_list.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/slice_list.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_img_extract.cxx.o @@ -4258,6 +4281,19 @@ cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/thumbnail.cxx.o -MF CMakeFiles/plmbase.dir/thumbnail.cxx.o.d -o CMakeFiles/plmbase.dir/thumbnail.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/thumbnail.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf.cxx.o -MF CMakeFiles/plmbase.dir/vf.cxx.o.d -o CMakeFiles/plmbase.dir/vf.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/vf.cxx +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx: In member function 'void Rpl_volume::apply_beam_modifiers()': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx:1471:22: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] + 1471 | printf ("ires = %d %d\n", ires[0], ires[1]); + | ~^ ~~~~~~~ + | | | + | int long int + | %ld +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/rpl_volume.cxx:1471:25: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] + 1471 | printf ("ires = %d %d\n", ires[0], ires[1]); + | ~^ ~~~~~~~ + | | | + | int long int + | %ld [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_convolve.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/vf_convolve.cxx.o -MF CMakeFiles/plmbase.dir/vf_convolve.cxx.o.d -o CMakeFiles/plmbase.dir/vf_convolve.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/vf_convolve.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_jacobian.cxx.o @@ -4288,54 +4324,22 @@ cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform.cxx.o -MF CMakeFiles/plmbase.dir/xform.cxx.o.d -o CMakeFiles/plmbase.dir/xform.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_convert.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_convert.cxx.o -MF CMakeFiles/plmbase.dir/xform_convert.cxx.o.d -o CMakeFiles/plmbase.dir/xform_convert.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_convert.cxx -[ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o -MF CMakeFiles/plmbase.dir/xform_legacy.cxx.o.d -o CMakeFiles/plmbase.dir/xform_legacy.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o -MF CMakeFiles/plmbase.dir/xform_point.cxx.o.d -o CMakeFiles/plmbase.dir/xform_point.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_point.cxx +[ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o -MF CMakeFiles/plmbase.dir/xform_legacy.cxx.o.d -o CMakeFiles/plmbase.dir/xform_legacy.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o -MF CMakeFiles/plmbase.dir/xio_ct.cxx.o.d -o CMakeFiles/plmbase.dir/xio_ct.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_ct.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -MF CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o.d -o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_ct_transform.cxx -[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o -MF CMakeFiles/plmbase.dir/xio_demographic.cxx.o.d -o CMakeFiles/plmbase.dir/xio_demographic.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_demographic.cxx -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_save_itk_bsp(itk::BSplineDeformableTransform::Pointer, const char*)': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:230:40: warning: format '%d' expects argument of type 'int', but argument 2 has type 'itk::TransformBaseTemplate::NumberOfParametersType' {aka 'long unsigned int'} [-Wformat=] - 230 | printf (" # of parameters=%d\n", transform->GetBulkTransform()->GetNumberOfParameters()); - | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - | | | - | int itk::TransformBaseTemplate::NumberOfParametersType {aka long unsigned int} - | %ld [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o -MF CMakeFiles/plmbase.dir/xio_dir.cxx.o.d -o CMakeFiles/plmbase.dir/xio_dir.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dir.cxx +[ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o -MF CMakeFiles/plmbase.dir/xio_demographic.cxx.o.d -o CMakeFiles/plmbase.dir/xio_demographic.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_demographic.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o -MF CMakeFiles/plmbase.dir/xio_dose.cxx.o.d -o CMakeFiles/plmbase.dir/xio_dose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o -MF CMakeFiles/plmbase.dir/xio_patient.cxx.o.d -o CMakeFiles/plmbase.dir/xio_patient.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_patient.cxx -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_load(Xform*, FILE*)': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:37:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 37 | fgets (buf,1024,fp); - | ~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:99:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 99 | fgets(buf,1024,fp); - | ~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:100:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 100 | fgets(buf,1024,fp); - | ~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:103:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 103 | fgets(buf,1024,fp); - | ~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:141:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 141 | fgets(buf,1024,fp); - | ~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:150:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 150 | fgets(buf,1024,fp); - | ~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:156:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 156 | fgets(buf,1024,fp); - | ~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:168:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 168 | fgets(buf,1024,fp); - | ~~~~~^~~~~~~~~~~~~ [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o -MF CMakeFiles/plmbase.dir/xio_plan.cxx.o.d -o CMakeFiles/plmbase.dir/xio_plan.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_plan.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o @@ -4350,6 +4354,33 @@ cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_image.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_image.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_metadata.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_module.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_module.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx +[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx +[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx +[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rt_study.cxx +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_save_itk_bsp(itk::BSplineDeformableTransform::Pointer, const char*)': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:230:40: warning: format '%d' expects argument of type 'int', but argument 2 has type 'itk::TransformBaseTemplate::NumberOfParametersType' {aka 'long unsigned int'} [-Wformat=] + 230 | printf (" # of parameters=%d\n", transform->GetBulkTransform()->GetNumberOfParameters()); + | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + | | | + | int itk::TransformBaseTemplate::NumberOfParametersType {aka long unsigned int} + | %ld +[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o +cd 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rt_study_p.cxx +[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_series.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_series.cxx +[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o +[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_uid.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_sro.cxx /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx: In function 'void xio_dose_load_header(Xio_dose_header*, const char*)': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:73:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 73 | fgets (line1, sizeof(line1), fp); @@ -4378,10 +4409,35 @@ /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_dose.cxx:135:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 135 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_module.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_module.cxx -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx +[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_util.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_util.cxx +[ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ray_trace_exact.cxx +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function 'void xform_legacy_load(Xform*, FILE*)': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:37:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 37 | fgets (buf,1024,fp); + | ~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:99:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 99 | fgets(buf,1024,fp); + | ~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:100:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 100 | fgets(buf,1024,fp); + | ~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:103:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 103 | fgets(buf,1024,fp); + | ~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:141:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 141 | fgets(buf,1024,fp); + | ~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:150:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 150 | fgets(buf,1024,fp); + | ~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:156:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 156 | fgets(buf,1024,fp); + | ~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xform_legacy.cxx:168:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 168 | fgets(buf,1024,fp); + | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx: In function 'void add_cms_structure(Rtss*, const Xio_studyset&, const char*, float)': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:111:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 111 | fgets (buf, 1024, fp); @@ -4407,26 +4463,6 @@ /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/xio_structures.cxx:175:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 175 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx -[ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx -[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx -[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rt_study.cxx -[ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rt_study_p.cxx -[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_series.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_series.cxx -[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_sro.cxx -[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_uid.cxx -[ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -MF CMakeFiles/plmbase.dir/dcmtk_util.cxx.o.d -o CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_util.cxx -[ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmbase_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nkidecompress -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -MF CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o.d -o CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/ray_trace_exact.cxx /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx: In member function 'void Dcmtk_rt_study::rt_ion_plan_load()': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:101:30: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=] 101 | printf (">> Num beams = %d\n", num_beams); @@ -4458,83 +4494,83 @@ make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 40%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o [ 40%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o -[ 40%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o +[ 40%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o +[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -MF CMakeFiles/plmutil.dir/bspline_correspond.cxx.o.d -o CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/bspline_correspond.cxx +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o -MF CMakeFiles/plmutil.dir/dice_statistics.cxx.o.d -o CMakeFiles/plmutil.dir/dice_statistics.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/dice_statistics.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o -MF CMakeFiles/plmutil.dir/distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/distance_map.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -MF CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o.d -o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/dicom_sro_save.cxx -[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o -[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o -[ 41%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o +[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o -MF CMakeFiles/plmutil.dir/distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/distance_map.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o -MF CMakeFiles/plmutil.dir/diff.cxx.o.d -o CMakeFiles/plmutil.dir/diff.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/diff.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -MF CMakeFiles/plmutil.dir/bspline_correspond.cxx.o.d -o CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/bspline_correspond.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o -MF CMakeFiles/plmutil.dir/dvh.cxx.o.d -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/dvh.cxx +[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o +[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -MF CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o.d -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/gamma_dose_comparison.cxx -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -[ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o +[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -MF CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o.d -o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/hausdorff_distance.cxx -[ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o +[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o -MF CMakeFiles/plmutil.dir/dvh.cxx.o.d -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/dvh.cxx +[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -MF CMakeFiles/plmutil.dir/geometry_chooser.cxx.o.d -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/geometry_chooser.cxx +[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o -MF CMakeFiles/plmutil.dir/image_boundary.cxx.o.d -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/image_boundary.cxx +[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o +[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o +[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o +[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o +[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o +[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o +[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o +[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o +[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o +[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o -MF CMakeFiles/plmutil.dir/image_center.cxx.o.d -o CMakeFiles/plmutil.dir/image_center.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/image_center.cxx -[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o -MF CMakeFiles/plmutil.dir/itk_adjust.cxx.o.d -o CMakeFiles/plmutil.dir/itk_adjust.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_adjust.cxx -[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o +[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o +[ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o -MF CMakeFiles/plmutil.dir/itk_crop.cxx.o.d -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_crop.cxx -[ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -MF CMakeFiles/plmutil.dir/itk_distance_map.cxx.o.d -o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_distance_map.cxx +[ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o +[ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o +[ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o -MF CMakeFiles/plmutil.dir/itk_gabor.cxx.o.d -o CMakeFiles/plmutil.dir/itk_gabor.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_gabor.cxx +[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -MF CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o.d -o CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_histogram_matching.cxx -[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o -[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_intersect.cxx.o -MF CMakeFiles/plmutil.dir/itk_intersect.cxx.o.d -o CMakeFiles/plmutil.dir/itk_intersect.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_intersect.cxx +[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o -MF CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o.d -o CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_local_intensity_correction.cxx -[ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o +[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o +[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o -MF CMakeFiles/plmutil.dir/itk_mask.cxx.o.d -o CMakeFiles/plmutil.dir/itk_mask.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_mask.cxx -[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o +[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o -MF CMakeFiles/plmutil.dir/itk_scale.cxx.o.d -o CMakeFiles/plmutil.dir/itk_scale.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_scale.cxx -[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o -MF CMakeFiles/plmutil.dir/itk_threshold.cxx.o.d -o CMakeFiles/plmutil.dir/itk_threshold.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_threshold.cxx -[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o -MF CMakeFiles/plmutil.dir/itk_union.cxx.o.d -o CMakeFiles/plmutil.dir/itk_union.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/itk_union.cxx -[ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o +[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o -MF CMakeFiles/plmutil.dir/landmark_diff.cxx.o.d -o CMakeFiles/plmutil.dir/landmark_diff.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/landmark_diff.cxx -[ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o +[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o -MF CMakeFiles/plmutil.dir/proj_image_filter.cxx.o.d -o CMakeFiles/plmutil.dir/proj_image_filter.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/proj_image_filter.cxx -[ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o -MF CMakeFiles/plmutil.dir/plm_series.cxx.o.d -o CMakeFiles/plmutil.dir/plm_series.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/plm_series.cxx -[ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o -MF CMakeFiles/plmutil.dir/plm_study.cxx.o.d -o CMakeFiles/plmutil.dir/plm_study.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/plm_study.cxx -[ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o -MF CMakeFiles/plmutil.dir/rt_study_warp.cxx.o.d -o CMakeFiles/plmutil.dir/rt_study_warp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/rt_study_warp.cxx -[ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o -MF CMakeFiles/plmutil.dir/sift.cxx.o.d -o CMakeFiles/plmutil.dir/sift.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/sift.cxx -[ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o +[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o -MF CMakeFiles/plmutil.dir/simplify_points.cxx.o.d -o CMakeFiles/plmutil.dir/simplify_points.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/simplify_points.cxx -[ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o -MF CMakeFiles/plmutil.dir/ss_img_stats.cxx.o.d -o CMakeFiles/plmutil.dir/ss_img_stats.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/ss_img_stats.cxx -[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o -MF CMakeFiles/plmutil.dir/synthetic_mha.cxx.o.d -o CMakeFiles/plmutil.dir/synthetic_mha.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/synthetic_mha.cxx -[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -MF CMakeFiles/plmutil.dir/synthetic_vf.cxx.o.d -o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/synthetic_vf.cxx -[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o +[ 51%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o -MF CMakeFiles/plmutil.dir/threshbox.cxx.o.d -o CMakeFiles/plmutil.dir/threshbox.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/threshbox.cxx -[ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o -MF CMakeFiles/plmutil.dir/volume_adjust.cxx.o.d -o CMakeFiles/plmutil.dir/volume_adjust.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/volume_adjust.cxx -[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -MF CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o.d -o CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/volume_boundary_type.cxx -[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o -MF CMakeFiles/plmutil.dir/xf_invert.cxx.o.d -o CMakeFiles/plmutil.dir/xf_invert.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/xf_invert.cxx -[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/zcrop.cxx.o -MF CMakeFiles/plmutil.dir/zcrop.cxx.o.d -o CMakeFiles/plmutil.dir/zcrop.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/zcrop.cxx -[ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o -MF CMakeFiles/plmutil.dir/gabor.cxx.o.d -o CMakeFiles/plmutil.dir/gabor.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/gabor.cxx -[ 51%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmutil_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o -MF CMakeFiles/plmutil.dir/ramp_filter.cxx.o.d -o CMakeFiles/plmutil.dir/ramp_filter.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/ramp_filter.cxx /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/threshbox.cxx: In function 'void do_overlap_fraction(Threshbox_parms*)': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/threshbox.cxx:257:15: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] @@ -4567,58 +4603,96 @@ make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build +make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 51%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmreconstruct_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -MF CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o.d -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/bowtie_correction.cxx -[ 51%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -[ 53%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -[ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o -[ 53%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o -[ 53%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o -[ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o -[ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o -MF CMakeFiles/plmdose.dir/beam_calc.cxx.o.d -o CMakeFiles/plmdose.dir/beam_calc.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx -[ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o -[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o -MF CMakeFiles/plmregister.dir/bspline.cxx.o.d -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline.cxx -[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o +[ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o +[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o +[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o +[ 62%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o +[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o +[ 62%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o +[ 62%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o +[ 62%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o +[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o +[ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o -MF CMakeFiles/plmdose.dir/beam_map.cxx.o.d -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_map.cxx +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_numeric.cxx +[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o -MF CMakeFiles/plmdose.dir/rt_mebs.cxx.o.d -o CMakeFiles/plmdose.dir/rt_mebs.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx +[ 52%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -MF CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_landmarks.cxx +[ 62%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o -MF CMakeFiles/plmdose.dir/particle_type.cxx.o.d -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/particle_type.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -MF CMakeFiles/plmdose.dir/rt_spot_map.cxx.o.d -o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_spot_map.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmreconstruct_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mi.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mi.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_mi.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmreconstruct_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_options.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr_options.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmreconstruct_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mi.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mi.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_mi.cxx +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o -MF CMakeFiles/plmdose.dir/plan_calc.cxx.o.d -o CMakeFiles/plmdose.dir/plan_calc.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o -MF CMakeFiles/plmdose.dir/wed_parms.cxx.o.d -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o -MF CMakeFiles/plmdose.dir/rt_lut.cxx.o.d -o CMakeFiles/plmdose.dir/rt_lut.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_lut.cxx +[ 52%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmreconstruct_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/fdk.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o -MF CMakeFiles/plmdose.dir/beam_map.cxx.o.d -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_map.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmreconstruct_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx -[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o -MF CMakeFiles/plmregister.dir/bspline_gm.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_gm.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_gm.cxx -[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o -MF CMakeFiles/plmdose.dir/beam_calc.cxx.o.d -o CMakeFiles/plmdose.dir/beam_calc.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o -MF CMakeFiles/plmregister.dir/bspline.cxx.o.d -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o -MF CMakeFiles/plmdose.dir/bragg_curve.cxx.o.d -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/bragg_curve.cxx -[ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o -[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -MF CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_landmarks.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o -MF CMakeFiles/plmdose.dir/compute_dose.cxx.o.d -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/compute_dose.cxx -[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx -[ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o -MF CMakeFiles/plmdose.dir/particle_type.cxx.o.d -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/particle_type.cxx -[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o -MF CMakeFiles/plmregister.dir/bspline_gm.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_gm.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_gm.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmreconstruct_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -MF CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o.d -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/bowtie_correction.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -msse2 -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o -MF CMakeFiles/plmregister.dir/bspline_mse.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_mse.cxx -[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmreconstruct_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -MF CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o.d -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmreconstruct_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -MF CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o.d -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_nlopt.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o -MF CMakeFiles/plmregister.dir/bspline_parms.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_parms.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o -MF CMakeFiles/plmdose.dir/compute_dose.cxx.o.d -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/compute_dose.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o -MF CMakeFiles/plmregister.dir/bspline_score.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_score.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_score.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -MF CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o.d -o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/dose_volume_functions.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o -MF CMakeFiles/plmregister.dir/bspline_stage.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_stage.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_stage.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -MF CMakeFiles/plmdose.dir/rt_beam_model.cxx.o.d -o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_beam_model.cxx -[ 55%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o -MF CMakeFiles/plmregister.dir/bspline_state.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_state.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_state.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -MF CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o.d -o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx -[ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx -[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_analytic.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o -MF CMakeFiles/plmdose.dir/rt_dij.cxx.o.d -o CMakeFiles/plmdose.dir/rt_dij.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_dij.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o -MF CMakeFiles/plmdose.dir/rt_parms.cxx.o.d -o CMakeFiles/plmdose.dir/rt_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_parms.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_semi_analytic.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o -MF CMakeFiles/plmdose.dir/rt_sigma.cxx.o.d -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_sigma.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o -MF CMakeFiles/plmregister.dir/demons.cxx.o.d -o CMakeFiles/plmregister.dir/demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o -MF CMakeFiles/plmregister.dir/demons_cpu.cxx.o.d -o CMakeFiles/plmregister.dir/demons_cpu.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons_cpu.cxx /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function 'bool Rt_depth_dose::load(const char*)': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:64:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 64 | fgets (linebuf, 128, fp); @@ -4639,38 +4713,20 @@ /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:125:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 125 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ -[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o -MF CMakeFiles/plmdose.dir/rt_lut.cxx.o.d -o CMakeFiles/plmdose.dir/rt_lut.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_lut.cxx -[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -MF CMakeFiles/plmdose.dir/rt_spot_map.cxx.o.d -o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_spot_map.cxx -[ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o -MF CMakeFiles/plmdose.dir/rt_mebs.cxx.o.d -o CMakeFiles/plmdose.dir/rt_mebs.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx -[ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_nlopt.cxx -[ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o -MF CMakeFiles/plmdose.dir/rt_parms.cxx.o.d -o CMakeFiles/plmdose.dir/rt_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_parms.cxx -[ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o -[ 58%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o -MF CMakeFiles/plmdose.dir/plan_calc.cxx.o.d -o CMakeFiles/plmdose.dir/plan_calc.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -MF CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx -[ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o -MF CMakeFiles/plmdose.dir/rt_sigma.cxx.o.d -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_sigma.cxx -[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o -MF CMakeFiles/plmregister.dir/bspline_parms.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_parms.cxx -[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o -MF CMakeFiles/plmregister.dir/bspline_score.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_score.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_score.cxx -[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o -MF CMakeFiles/plmregister.dir/bspline_stage.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_stage.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_stage.cxx -[ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o -MF CMakeFiles/plmregister.dir/bspline_state.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_state.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_state.cxx -[ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmdose_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o -MF CMakeFiles/plmdose.dir/wed_parms.cxx.o.d -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx -[ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize.cxx -[ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_analytic.cxx -[ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_numeric.cxx +[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o -MF CMakeFiles/plmregister.dir/demons_state.cxx.o.d -o CMakeFiles/plmregister.dir/demons_state.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons_state.cxx +[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -MF CMakeFiles/plmregister.dir/gpuit_demons.cxx.o.d -o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/gpuit_demons.cxx +[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o -MF CMakeFiles/plmregister.dir/histogram.cxx.o.d -o CMakeFiles/plmregister.dir/histogram.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/histogram.cxx +[ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -MF CMakeFiles/plmregister.dir/groupwise_parms.cxx.o.d -o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/groupwise_parms.cxx +[ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o -MF CMakeFiles/plmregister.dir/itk_align_center.cxx.o.d -o CMakeFiles/plmregister.dir/itk_align_center.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_align_center.cxx +[ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons.cxx +[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons_util.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_util.cxx /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx: In member function 'int Wed_parms::set_key_val(const char*, const char*, int)': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/wed_parms.cxx:237:32: warning: format '%i' expects argument of type 'int*', but argument 3 has type 'plm_long*' {aka 'long int*'} [-Wformat=] 237 | if (sscanf (val, "%i %i", @@ -4693,10 +4749,16 @@ | ~~~~~~~~~~~~~~~~ | | | plm_long* {aka long int*} -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx: In member function 'bool Beam_calc::load(const char*)': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx:194:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 194 | fgets (linebuf, 128, fp); - | ~~~~~~^~~~~~~~~~~~~~~~~~ +[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o +[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx +[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.cxx +[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx +[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -MF CMakeFiles/plmregister.dir/itk_optimizer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_optimizer.cxx /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx: In function 'void bspline_optimize_steepest_trace(Bspline_optimize*)': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx:155:42: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 155 | sprintf (filename, "grad_%04i.csv", success); @@ -4712,23 +4774,48 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -[ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -MF CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o.d -o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/bspline_regularize_semi_analytic.cxx -[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o -MF CMakeFiles/plmregister.dir/demons.cxx.o.d -o CMakeFiles/plmregister.dir/demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons.cxx -[ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o -MF CMakeFiles/plmregister.dir/demons_cpu.cxx.o.d -o CMakeFiles/plmregister.dir/demons_cpu.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/demons_cpu.cxx -[ 63%] Linking CXX shared library ../../../libplmreconstruct.so -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 -[ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT 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/usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 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/usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 ../../../libnkidecompress.a -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a -[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -[ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -MF CMakeFiles/plmregister.dir/gpuit_demons.cxx.o.d -o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/gpuit_demons.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -MF CMakeFiles/plmregister.dir/groupwise_parms.cxx.o.d -o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/groupwise_parms.cxx -[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o -MF CMakeFiles/plmregister.dir/histogram.cxx.o.d -o CMakeFiles/plmregister.dir/histogram.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/histogram.cxx +[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o -MF CMakeFiles/plmregister.dir/itk_registration.cxx.o.d -o CMakeFiles/plmregister.dir/itk_registration.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_registration.cxx +[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -MF CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_registration_observer.cxx +[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o -MF CMakeFiles/plmregister.dir/itk_tps.cxx.o.d -o CMakeFiles/plmregister.dir/itk_tps.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_tps.cxx +[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o -MF CMakeFiles/plmregister.dir/joint_histogram.cxx.o.d -o CMakeFiles/plmregister.dir/joint_histogram.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/joint_histogram.cxx +[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o -MF CMakeFiles/plmregister.dir/landmark_warp.cxx.o.d -o CMakeFiles/plmregister.dir/landmark_warp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/landmark_warp.cxx +[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o -MF CMakeFiles/plmregister.dir/metric_parms.cxx.o.d -o CMakeFiles/plmregister.dir/metric_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/metric_parms.cxx +[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o -MF CMakeFiles/plmregister.dir/metric_state.cxx.o.d -o CMakeFiles/plmregister.dir/metric_state.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/metric_state.cxx +[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o -MF CMakeFiles/plmregister.dir/process_parms.cxx.o.d -o CMakeFiles/plmregister.dir/process_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/process_parms.cxx +[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -MF CMakeFiles/plmregister.dir/rbf_cluster.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_cluster.cxx +[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -MF CMakeFiles/plmregister.dir/rbf_gauss.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_gauss.cxx +[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -MF CMakeFiles/plmregister.dir/rbf_wendland.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_wendland.cxx +[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o -MF CMakeFiles/plmregister.dir/registration.cxx.o.d -o CMakeFiles/plmregister.dir/registration.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx +[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o -MF CMakeFiles/plmregister.dir/registration_data.cxx.o.d -o CMakeFiles/plmregister.dir/registration_data.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_data.cxx +[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o -MF CMakeFiles/plmregister.dir/registration_parms.cxx.o.d -o CMakeFiles/plmregister.dir/registration_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_parms.cxx +[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o -MF CMakeFiles/plmregister.dir/registration_resample.cxx.o.d -o CMakeFiles/plmregister.dir/registration_resample.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_resample.cxx +[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o -MF CMakeFiles/plmregister.dir/registration_util.cxx.o.d -o CMakeFiles/plmregister.dir/registration_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_util.cxx +[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o -MF CMakeFiles/plmregister.dir/shared_parms.cxx.o.d -o CMakeFiles/plmregister.dir/shared_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/shared_parms.cxx +[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o -MF CMakeFiles/plmregister.dir/stage_parms.cxx.o.d -o CMakeFiles/plmregister.dir/stage_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/stage_parms.cxx +[ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -MF CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o.d -o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/similarity_metric_type.cxx +[ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -MF CMakeFiles/plmregister.dir/translation_grid_search.cxx.o.d -o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_grid_search.cxx +[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o -MF CMakeFiles/plmregister.dir/translation_mi.cxx.o.d -o CMakeFiles/plmregister.dir/translation_mi.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_mi.cxx /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function 'void Rt_mebs::load_beamlet_map(Aperture::Pointer&)': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1129:52: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 1129 | printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number); @@ -4768,12 +4855,10 @@ | | | | int plm_long {aka long int} | %ld -[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o -MF CMakeFiles/plmregister.dir/itk_align_center.cxx.o.d -o CMakeFiles/plmregister.dir/itk_align_center.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_align_center.cxx -[ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons.cxx -[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -MF CMakeFiles/plmregister.dir/itk_demons_util.cxx.o.d -o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_util.cxx +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx: In member function 'bool Beam_calc::load(const char*)': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/beam_calc.cxx:194:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 194 | fgets (linebuf, 128, fp); + | ~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_dij.cxx: In member function 'void Rt_dij::dump(const std::string&) const': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/rt_dij.cxx:51:28: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long unsigned int' [-Wformat=] 51 | fprintf (fp, "%d %f\n", c->index, c->dose); @@ -4781,14 +4866,11 @@ | | | | int long unsigned int | %ld -[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx -[ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.cxx -[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -MF CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o.d -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx +[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mse.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mse.cxx.o -MF CMakeFiles/plmregister.dir/translation_mse.cxx.o.d -o CMakeFiles/plmregister.dir/translation_mse.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_mse.cxx +[ 72%] Linking CXX shared library ../../../libplmreconstruct.so +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -shared 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/usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect -lminc2 -lm -lz -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 ../../../libnkidecompress.a -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function 'void Plan_calc::normalize_beam_dose(Beam_calc*)': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose/plan_calc.cxx:424:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'plm_long' {aka 'long int'} [-Wformat=] 424 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); @@ -4839,53 +4921,14 @@ | | | | int long int | %ld -[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -MF CMakeFiles/plmregister.dir/itk_optimizer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_optimizer.cxx -[ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o -MF CMakeFiles/plmregister.dir/itk_registration.cxx.o.d -o CMakeFiles/plmregister.dir/itk_registration.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_registration.cxx -[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -MF CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o.d -o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_registration_observer.cxx -[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o -MF CMakeFiles/plmregister.dir/itk_tps.cxx.o.d -o CMakeFiles/plmregister.dir/itk_tps.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_tps.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_symlink_library ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmreconstruct.so make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 67%] Built target plmreconstruct -[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o -MF CMakeFiles/plmregister.dir/joint_histogram.cxx.o.d -o CMakeFiles/plmregister.dir/joint_histogram.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/joint_histogram.cxx -[ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o -MF CMakeFiles/plmregister.dir/landmark_warp.cxx.o.d -o CMakeFiles/plmregister.dir/landmark_warp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/landmark_warp.cxx -[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o -MF CMakeFiles/plmregister.dir/metric_parms.cxx.o.d -o CMakeFiles/plmregister.dir/metric_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/metric_parms.cxx -[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o -[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o -MF CMakeFiles/plmregister.dir/metric_state.cxx.o.d -o CMakeFiles/plmregister.dir/metric_state.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/metric_state.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o -MF CMakeFiles/plmregister.dir/process_parms.cxx.o.d -o CMakeFiles/plmregister.dir/process_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/process_parms.cxx -[ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -MF CMakeFiles/plmregister.dir/rbf_cluster.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_cluster.cxx -[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -MF CMakeFiles/plmregister.dir/rbf_gauss.cxx.o.d -o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/rbf_gauss.cxx -[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o -MF CMakeFiles/plmregister.dir/registration.cxx.o.d -o CMakeFiles/plmregister.dir/registration.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx -[ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o -MF CMakeFiles/plmregister.dir/registration_data.cxx.o.d -o CMakeFiles/plmregister.dir/registration_data.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_data.cxx -[ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o -MF CMakeFiles/plmregister.dir/registration_parms.cxx.o.d -o CMakeFiles/plmregister.dir/registration_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_parms.cxx -[ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o -MF CMakeFiles/plmregister.dir/registration_resample.cxx.o.d -o CMakeFiles/plmregister.dir/registration_resample.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_resample.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 70%] Built target plmdose -[ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o -MF CMakeFiles/plmregister.dir/registration_util.cxx.o.d -o CMakeFiles/plmregister.dir/registration_util.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration_util.cxx +[ 72%] Built target plmreconstruct In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons/itkDiffeomorphicDemonsRegistrationWithMaskFilter.h:22, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.h:7, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx:5: + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons/itkLogDomainDemonsRegistrationFilterWithMaskExtension.h:5, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:14, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.h:8, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.cxx:5: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of 'itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] @@ -4893,15 +4936,11 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/ITK-5.3/itkLightObject.h:21, from /usr/include/ITK-5.3/itkObject.h:31, - from /usr/include/ITK-5.3/itkDataObject.h:31, - from /usr/include/ITK-5.3/itkProcessObject.h:31, - from /usr/include/ITK-5.3/itkImageSource.h:31, - from /usr/include/ITK-5.3/itkImageToImageFilter.h:31, - from /usr/include/ITK-5.3/itkInPlaceImageFilter.h:31, - from /usr/include/ITK-5.3/itkFiniteDifferenceImageFilter.h:22, - from /usr/include/ITK-5.3/itkDenseFiniteDifferenceImageFilter.h:22, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkPDEDeformableRegistrationWithMaskFilter.h:20, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons/itkDiffeomorphicDemonsRegistrationWithMaskFilter.h:21: + from /usr/include/ITK-5.3/itkRegion.h:31, + from /usr/include/ITK-5.3/itkImageRegion.h:31, + from /usr/include/ITK-5.3/itkImage.h:21, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_type.h:14, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:8: /usr/include/ITK-5.3/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ @@ -4911,13 +4950,10 @@ /usr/include/ITK-5.3/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ -[ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o -MF CMakeFiles/plmregister.dir/shared_parms.cxx.o.d -o CMakeFiles/plmregister.dir/shared_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/shared_parms.cxx In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons/itkLogDomainDemonsRegistrationFilterWithMaskExtension.h:5, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:14, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.h:8, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_log_demons.cxx:5: + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons/itkDiffeomorphicDemonsRegistrationWithMaskFilter.h:22, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.h:7, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx:5: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx: In instantiation of 'itk::ESMDemonsRegistrationWithMaskFunction::PixelType itk::ESMDemonsRegistrationWithMaskFunction::ComputeUpdate(const NeighborhoodType&, void*, const FloatOffsetType&) [with TFixedImage = itk::Image; TMovingImage = itk::Image; TDeformationField = itk::Image, 3>; PixelType = itk::Vector; NeighborhoodType = itk::ConstNeighborhoodIterator, 3>, itk::ZeroFluxNeumannBoundaryCondition, 3>, itk::Image, 3> > >; FloatOffsetType = itk::Vector]': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:228:1: required from here /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.txx:279:51: warning: 'bool itk::SpatialObject::IsInside(const PointType&, unsigned int, const std::string&) const [with unsigned int VDimension = 3; PointType = itk::Point; std::string = std::__cxx11::basic_string]' is deprecated [-Wdeprecated-declarations] @@ -4925,11 +4961,15 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/ITK-5.3/itkLightObject.h:21, from /usr/include/ITK-5.3/itkObject.h:31, - from /usr/include/ITK-5.3/itkRegion.h:31, - from /usr/include/ITK-5.3/itkImageRegion.h:31, - from /usr/include/ITK-5.3/itkImage.h:21, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base/itk_image_type.h:14, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:8: + from /usr/include/ITK-5.3/itkDataObject.h:31, + from /usr/include/ITK-5.3/itkProcessObject.h:31, + from /usr/include/ITK-5.3/itkImageSource.h:31, + from /usr/include/ITK-5.3/itkImageToImageFilter.h:31, + from /usr/include/ITK-5.3/itkInPlaceImageFilter.h:31, + from /usr/include/ITK-5.3/itkFiniteDifferenceImageFilter.h:22, + from /usr/include/ITK-5.3/itkDenseFiniteDifferenceImageFilter.h:22, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkPDEDeformableRegistrationWithMaskFilter.h:20, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons/itkDiffeomorphicDemonsRegistrationWithMaskFilter.h:21: /usr/include/ITK-5.3/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ @@ -4939,6 +4979,37 @@ /usr/include/ITK-5.3/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx: In function 'void* registration_main_thread(void*)': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:597:51: warning: 'ThreadInfoStruct' is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] + 597 | itk::PlatformMultiThreader::ThreadInfoStruct *info + | ^~~~ +In file included from /usr/include/ITK-5.3/itkPlatformMultiThreader.h:31, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:9: +/usr/include/ITK-5.3/itkMultiThreaderBase.h:251:93: note: declared here + 251 | struct [[deprecated("Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0")]] ThreadInfoStruct + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:598:56: warning: 'ThreadInfoStruct' is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] + 598 | = (itk::PlatformMultiThreader::ThreadInfoStruct*) param; + | ^ +/usr/include/ITK-5.3/itkMultiThreaderBase.h:251:93: note: declared here + 251 | struct [[deprecated("Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0")]] ThreadInfoStruct + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx: In member function 'void Registration::start_registration()': +/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:623:53: warning: 'itk::ThreadIdType itk::PlatformMultiThreader::SpawnThread(itk::ThreadFunctionType, void*)' is deprecated [-Wdeprecated-declarations] + 623 | d_ptr->thread_no = d_ptr->threader->SpawnThread ( + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ + 624 | registration_main_thread, (void*) this); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/ITK-5.3/itkIntTypes.h:21, + from /usr/include/ITK-5.3/itkSize.h:21, + from /usr/include/ITK-5.3/itkOffset.h:21, + from /usr/include/ITK-5.3/itkIndex.h:22, + from /usr/include/ITK-5.3/itkImageConstIteratorWithIndex.h:21, + from /usr/include/ITK-5.3/itkImageRegionConstIteratorWithIndex.h:21, + from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:7: +/usr/include/ITK-5.3/itkPlatformMultiThreader.h:133:3: note: declared here + 133 | itkLegacyMacro(ThreadIdType SpawnThread(ThreadFunctionType, void * data)); + | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons/itkLogDomainDemonsRegistrationFilterWithMaskExtension.h:5, from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_demons_types.h:14, @@ -4965,8 +5036,6 @@ /usr/include/ITK-5.3/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ -[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -MF CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o.d -o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/similarity_metric_type.cxx In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/itkESMDemonsRegistrationWithMaskFunction.h:352, from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces/itkFastSymmetricForcesDemonsRegistrationWithMaskFilter.h:22, from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/itk_fsf_demons.h:7, @@ -4987,45 +5056,12 @@ /usr/include/ITK-5.3/itkSpatialObject.h:600:3: note: declared here 600 | itkLegacyMacro(virtual bool IsInside(const PointType & point, unsigned int depth = 0, const std::string & name = "") | ^~~~~~~~~~~~~~ -[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o -MF CMakeFiles/plmregister.dir/stage_parms.cxx.o.d -o CMakeFiles/plmregister.dir/stage_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/stage_parms.cxx -[ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -MF CMakeFiles/plmregister.dir/translation_grid_search.cxx.o.d -o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_grid_search.cxx -[ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o -MF CMakeFiles/plmregister.dir/translation_mi.cxx.o.d -o CMakeFiles/plmregister.dir/translation_mi.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_mi.cxx -[ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mse.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmregister_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mse.cxx.o -MF CMakeFiles/plmregister.dir/translation_mse.cxx.o.d -o CMakeFiles/plmregister.dir/translation_mse.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/translation_mse.cxx -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx: In function 'void* registration_main_thread(void*)': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:597:51: warning: 'ThreadInfoStruct' is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] - 597 | itk::PlatformMultiThreader::ThreadInfoStruct *info - | ^~~~ -In file included from /usr/include/ITK-5.3/itkPlatformMultiThreader.h:31, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:9: -/usr/include/ITK-5.3/itkMultiThreaderBase.h:251:93: note: declared here - 251 | struct [[deprecated("Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0")]] ThreadInfoStruct - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:598:56: warning: 'ThreadInfoStruct' is deprecated: Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0 [-Wdeprecated-declarations] - 598 | = (itk::PlatformMultiThreader::ThreadInfoStruct*) param; - | ^ -/usr/include/ITK-5.3/itkMultiThreaderBase.h:251:93: note: declared here - 251 | struct [[deprecated("Use WorkUnitInfo, ThreadInfoStruct is deprecated since ITK 5.0")]] ThreadInfoStruct - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx: In member function 'void Registration::start_registration()': -/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:623:53: warning: 'itk::ThreadIdType itk::PlatformMultiThreader::SpawnThread(itk::ThreadFunctionType, void*)' is deprecated [-Wdeprecated-declarations] - 623 | d_ptr->thread_no = d_ptr->threader->SpawnThread ( - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ - 624 | registration_main_thread, (void*) this); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/ITK-5.3/itkIntTypes.h:21, - from /usr/include/ITK-5.3/itkSize.h:21, - from /usr/include/ITK-5.3/itkOffset.h:21, - from /usr/include/ITK-5.3/itkIndex.h:22, - from /usr/include/ITK-5.3/itkImageConstIteratorWithIndex.h:21, - from /usr/include/ITK-5.3/itkImageRegionConstIteratorWithIndex.h:21, - from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/registration.cxx:7: -/usr/include/ITK-5.3/itkPlatformMultiThreader.h:133:3: note: declared here - 133 | itkLegacyMacro(ThreadIdType SpawnThread(ThreadFunctionType, void * data)); - | ^~~~~~~~~~~~~~ +[ 72%] Linking CXX shared library ../../../libplmdose.so +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmdose.so.1.9 -o ../../../libplmdose.so.1.9 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.9 ../../../libspecfun.a ../../../libplmbase.so.1.9 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/usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmdose.so +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 72%] Built target plmdose [ 72%] Linking CXX shared library ../../../libplmregister.so cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmregister.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libplmregister.so.1.9 -o ../../../libplmregister.so.1.9 CMakeFiles/plmregister.dir/bspline.cxx.o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o CMakeFiles/plmregister.dir/bspline_gm.cxx.o CMakeFiles/plmregister.dir/bspline_mi.cxx.o CMakeFiles/plmregister.dir/bspline_mse.cxx.o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o CMakeFiles/plmregister.dir/bspline_parms.cxx.o CMakeFiles/plmregister.dir/bspline_score.cxx.o CMakeFiles/plmregister.dir/bspline_stage.cxx.o 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/usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 ../../../libnkidecompress.a ../../../libplmsys.so.1.9 -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lfftw3f -lfftw3 ../../../libdevillard.a @@ -5038,38 +5074,38 @@ make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o -[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel.cxx -[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_feature.cxx -[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_parms.cxx +[ 72%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o [ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_task.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_task.cxx +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o +[ 73%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_parms.cxx +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_thumbnailer.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_task.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_task.cxx +[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_trainer.cxx -[ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o +[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o +[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -MF CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o.d -o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/dlib_trainer.cxx -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_atlas_selection.cxx -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o -MF CMakeFiles/plmsegment.dir/mabs.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_seg_weights.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -[ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_stats.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_stats.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o -MF CMakeFiles/plmsegment.dir/mabs.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_feature.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_atlas_selection.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -MF CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o.d -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_parms.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_parms.cxx -[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_seg_weights.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_stats.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_stats.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_staple.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_staple.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o -MF CMakeFiles/plmsegment.dir/ml_convert.cxx.o.d -o CMakeFiles/plmsegment.dir/ml_convert.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/ml_convert.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o +[ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -fopenmp -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -MF CMakeFiles/plmsegment.dir/mabs_vote.cxx.o.d -o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/mabs_vote.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o -MF CMakeFiles/plmsegment.dir/ml_convert.cxx.o.d -o CMakeFiles/plmsegment.dir/ml_convert.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/ml_convert.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/segment_body.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -Dplmsegment_EXPORTS -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIC -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/segment/CMakeFiles/plmsegment.dir/segment_body.cxx.o -MF CMakeFiles/plmsegment.dir/segment_body.cxx.o.d -o CMakeFiles/plmsegment.dir/segment_body.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment/segment_body.cxx In file included from /build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/RANSAC.h:194, @@ -5123,279 +5159,261 @@ make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend -make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake "--color=" -make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake "--color=" +make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake "--color=" make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake "--color=" make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend +make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake "--color=" -make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build +make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build +make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build +make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build -make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build -make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build -make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build -make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plastimatch-1.9.4+dfsg.1 /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake "--color=" -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -[ 77%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o -[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o +[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o [ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o -[ 80%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o -MF CMakeFiles/demons.dir/demons_main.cxx.o.d -o CMakeFiles/demons.dir/demons_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/demons_main.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -MF CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o.d -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx +[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o +[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o +[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o +[ 78%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o +[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o +[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o +[ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o +[ 79%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o +[ 80%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o +[ 79%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o +[ 80%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -MF CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o.d -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/shuffle_mha_main.cxx +[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o +[ 80%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -MF CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o.d -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/landmark_diff_main.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -MF CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o.d -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o -MF CMakeFiles/compute_distance.dir/compute_distance.cxx.o.d -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/compute_distance.cxx +[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o +[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -MF CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o.d -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o -MF CMakeFiles/dicom_info.dir/dicom_info.cxx.o.d -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dicom_info.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o -MF CMakeFiles/compute_distance.dir/closest_point.cxx.o.d -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/closest_point.cxx -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o -MF CMakeFiles/wed.dir/wed_main.cxx.o.d -o CMakeFiles/wed.dir/wed_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/wed_main.cxx -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -MF CMakeFiles/compute_distance.dir/read_obj.cxx.o.d -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/read_obj.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_add.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_add.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o -MF CMakeFiles/check_grad.dir/check_grad.cxx.o.d -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/check_grad.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/bragg_curve_opts.cxx -[ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o -[ 81%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o -MF CMakeFiles/compute_distance.dir/compute_distance.cxx.o.d -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/compute_distance.cxx -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o -MF CMakeFiles/dlib_train.dir/dlib_train.cxx.o.d -o CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dlib_train.cxx -[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build +[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_adjust.cxx -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 82%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o +[ 82%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o +[ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o -MF CMakeFiles/compute_distance.dir/read_obj.cxx.o.d -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/read_obj.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o -MF CMakeFiles/demons.dir/demons_opts.cxx.o.d -o CMakeFiles/demons.dir/demons_opts.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/demons_opts.cxx +[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o -MF CMakeFiles/dlib_train.dir/dlib_train.cxx.o.d -o CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dlib_train.cxx +[ 82%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o +[ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -MF CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o.d -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx -[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx -[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -MF CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o.d -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx -[ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -MF CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o.d -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/landmark_diff_main.cxx -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build -make[3]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment 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/usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o +[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o -MF CMakeFiles/check_grad.dir/check_grad.cxx.o.d -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/check_grad.cxx +[ 84%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o -MF CMakeFiles/demons.dir/demons_main.cxx.o.d -o CMakeFiles/demons.dir/demons_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/demons_main.cxx +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_add.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_add.cxx +[ 84%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o +[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_autolabel_train.cxx -[ 83%] Linking CXX executable ../../../bragg_curve -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bragg_curve.dir/link.txt --verbose=1 -[ 83%] Linking CXX executable ../../../hnd_to_pfm -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -o ../../../bragg_curve -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 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../../../hnd_to_pfm -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o +[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/bragg_curve_opts.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_autolabel.cxx -[ 84%] Linking CXX executable ../../../demons -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/demons.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/demons.dir/demons_main.cxx.o CMakeFiles/demons.dir/demons_opts.cxx.o -o ../../../demons -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 84%] Built target bragg_curve -[ 84%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o -MF CMakeFiles/sobp.dir/sobp_main.cxx.o.d -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/sobp_main.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_bbox.cxx -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 84%] Built target hnd_to_pfm -[ 84%] Built target landmark_diff -[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_benchmark.cxx -[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o +[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -MF CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o.d -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_boundary.cxx -[ 85%] Linking CXX executable ../../../dicom_uid -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 -[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_compare.cxx -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 85%] Linking CXX executable ../../../sobp -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 85%] Built target demons -[ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_compose.cxx -[ 85%] Linking CXX executable ../../../wed -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o +[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o +[ 86%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_crop.cxx -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 86%] Built target sobp -[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o +[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dice.cxx -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 86%] Linking CXX executable ../../../shuffle_mha -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1 -[ 86%] Built target dicom_uid -[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_diff.cxx -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 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-lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 86%] Built target wed -[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dmap.cxx -[ 87%] Linking CXX executable ../../../compute_distance -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/inih-r29 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -MF CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o.d -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/standalone/dicom_uid_main.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dose.cxx -[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o +[ 86%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_drr.cxx -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 87%] Built target shuffle_mha -[ 87%] Built target compute_distance -[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_dvh.cxx cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_fdk.cxx -[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_filter.cxx -[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_gamma.cxx -[ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o +[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o +[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_header.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_header.cxx -[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_intersect.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_intersect.cxx -[ 89%] Linking CXX executable ../../../check_grad -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_jacobian.cxx -[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o +[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_lm_warp.cxx -[ 90%] Linking CXX executable ../../../dicom_info -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o +[ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_mabs.cxx -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 90%] Built target check_grad -[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o +[ 88%] Linking CXX executable ../../../landmark_diff +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/landmark_diff.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 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src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_mask.cxx -[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -[ 92%] Linking CXX executable ../../../xvi_archive +[ 89%] Linking CXX executable ../../../bragg_curve +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bragg_curve.dir/link.txt --verbose=1 +[ 89%] Linking CXX executable ../../../hnd_to_pfm +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -o ../../../bragg_curve -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 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/usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +[ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_maximum.cxx -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet 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../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 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/usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o +[ 90%] Linking CXX executable ../../../demons +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/demons.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/demons.dir/demons_main.cxx.o CMakeFiles/demons.dir/demons_opts.cxx.o -o ../../../demons -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so 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/usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 90%] Built target hnd_to_pfm +[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_ml_convert.cxx -[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 90%] Built target bragg_curve +[ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_multiply.cxx make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 92%] Built target dicom_info -[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o +[ 90%] Built target landmark_diff +[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_probe.cxx -[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 91%] Built target demons +[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_register.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_register.cxx -[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o +[ 91%] Linking CXX executable ../../../dicom_uid +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 +[ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_resample.cxx -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 93%] Built target xvi_archive -[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_segment.cxx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_scale.cxx -[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o +[ 92%] Linking CXX executable ../../../sobp +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +[ 92%] Linking CXX executable ../../../wed +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_segment.cxx +[ 92%] Linking CXX executable ../../../compute_distance +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 92%] Built target sobp +[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_sift.cxx -[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 92%] Built target dicom_uid +[ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys 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-I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_stats.cxx -[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o +[ 92%] Linking CXX executable ../../../shuffle_mha +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng 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/usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 92%] Built target wed +[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_synth.cxx -[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o +[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_synth_vf.cxx -[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o +[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_threshold.cxx -[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o +[ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_thumbnail.cxx -[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 93%] Built target compute_distance +[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_union.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_union.cxx -[ 97%] Linking CXX executable ../../../merge_vfs -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 -[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o +[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_warp.cxx -[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o +[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_warp_dij.cxx make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[ 97%] Built target merge_vfs -[ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o +[ 94%] Built target shuffle_mha +[ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_warp_pointset.cxx -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o +[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_wed.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_wed.cxx -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o +[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx +[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx: In function 'void do_command_xio_dvh(int, char**)': /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:46:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets(buf, 200, fp); //XiO Dose Volume Histogram @@ -5438,34 +5456,52 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx -[ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o +[ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -MF CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o.d -o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/pcmd_xf_invert.cxx -[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o +[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/plastimatch_main.cxx -[ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o +[ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DHDF_NO_NAMESPACE -DITK_FFTIMAGEFILTERINIT_FACTORY_REGISTER_MANAGER -DITK_IMAGEIO_FACTORY_REGISTER_MANAGER -DITK_MESHIO_FACTORY_REGISTER_MANAGER -DITK_TRANSFORMIO_FACTORY_REGISTER_MANAGER -DNO_STATIC_CAST -DOLD_HEADER_FILENAME -Dkiss_fft_scalar=double -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/util -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/sys -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/segment -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/register -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/reconstruct -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/qt -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/opencl -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cuda -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/dose -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/clp -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/base -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/itk-5.1.0 -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/nSIFT -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/liblbfgs-1.9/include -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/ransac/Common -I/build/reproducible-path/plastimatch-1.9.4+dfsg.1/libs/devillard -isystem /usr/include/hdf5/serial -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-5.3 -isystem /usr/include/vtk-9.1 -isystem /usr/include/freetype2 -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -std=c++17 -fPIE -Wno-cpp -Wreturn-type -MD -MT src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -MF CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o.d -o CMakeFiles/plastimatch.dir/plastimatch_startup.cxx.o -c /build/reproducible-path/plastimatch-1.9.4+dfsg.1/src/plastimatch/cli/plastimatch_startup.cxx +[ 96%] Linking CXX executable ../../../check_grad +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +[ 97%] Linking CXX executable ../../../dicom_info +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 97%] Built target check_grad +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 97%] Built target dicom_info +[ 98%] Linking CXX executable ../../../xvi_archive +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 98%] Built target xvi_archive +[ 99%] Linking CXX executable ../../../merge_vfs +cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu 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/usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 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/usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 99%] Built target merge_vfs +make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' +[ 99%] Built target plastimatch [100%] Linking CXX executable ../../../dlib_train cd /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlib_train.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plastimatch-1.9.4+dfsg.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fno-sized-deallocation -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic -fopenmp CMakeFiles/dlib_train.dir/dlib_train.cxx.o -o ../../../dlib_train -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/usr/lib/x86_64-linux-gnu/lib -L/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/cmake/dcmtk/lib/x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.9 ../../../libplmregister.so.1.9 ../../../libplmreconstruct.so.1.9 ../../../libplmdose.so.1.9 ../../../libplmutil.so.1.9 ../../../libplmbase.so.1.9 ../../../libplmsys.so.1.9 -lz -ljpeg -lexpat -lpng /usr/lib/x86_64-linux-gnu/libITKTestKernel-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKConvolution-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKColormap-5.3.so.1 -lofstd -loflog -ldcmdata -li2d -ldcmimgle -ldcmimage -ldcmjpeg -lijg8 -lijg12 -lijg16 -ldcmjpls -ldcmtkcharls -ldcmtls -ldcmnet -ldcmsr -lcmr -ldcmdsig -ldcmwlm -ldcmqrdb -ldcmpstat -ldcmrt -ldcmiod -ldcmfg -ldcmseg -ldcmtract -ldcmpmap -ldcmect /usr/lib/x86_64-linux-gnu/libITKDICOMParser-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDenoising-5.3.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/x86_64-linux-gnu/libITKIOBruker-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOCSV-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG2000-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOLSM-5.3.so.1 -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libITKIOMINC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMRC-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegistrationMethodsv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKReview-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVtkGlue-5.3.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libdcmdata.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libdlib.so.19.24.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libITKIOMeshBYU-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshFreeSurfer-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshGifti-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKgiftiio-5.3.so.1 -lexpat /usr/lib/x86_64-linux-gnu/libITKIOMeshOBJ-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshOFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeshBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizersv4-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitklbfgs-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBMP-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGDCM-5.3.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.24 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.24 /usr/lib/x86_64-linux-gnu/libITKIOGIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOJPEG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOMeta-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMetaIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIONIFTI-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKniftiio-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKznz-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKIONRRD-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKNrrdIO-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOPNG-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTIFF-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitktiff-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKLabelMap-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFastMarching-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPolynomials-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKBiasCorrection-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDeformableMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKDiffusionTensorImage-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPDEDeformableRegistration-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKFFT-5.3.so.1 -lfftw3_threads -lfftw3 -lfftw3f_threads -lfftw3f /usr/lib/x86_64-linux-gnu/libITKImageFeature-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKOptimizers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOBioRad-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOGE-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSiemens-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOIPL-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkopenjpeg-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOXML-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOStimulate-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformHDF5-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformInsightLegacy-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformMatlab-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOTransformBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransformFactory-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKKLMRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMarkovRandomFieldsClassifiers-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKQuadEdgeMeshFiltering-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKRegionGrowing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKWatersheds-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMathematicalMorphology-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKStatistics-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkNetlibSlatec-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSpatialObjects-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKMesh-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKTransform-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKPath-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKSmoothing-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKIOImageBase-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVideoCore-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKVTK-5.3.so.1 /usr/lib/x86_64-linux-gnu/libITKCommon-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkdouble-conversion-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitksys-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libITKVNLInstantiation-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl_algo-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvnl-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkv3p_netlib-5.3.so.1 /usr/lib/x86_64-linux-gnu/libitkvcl-5.3.so.1 -lm /usr/lib/x86_64-linux-gnu/libvtkRenderingOpenGL2-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingUI-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libX11.so /usr/lib/x86_64-linux-gnu/libvtkInteractionWidgets-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkInteractionStyle-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingContext2D-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkImagingSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingFreeType-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/x86_64-linux-gnu/libtbb.so.12.11 /usr/lib/x86_64-linux-gnu/libvtksys-9.1.so.9.1.0 -ldl -ljpeg -lpng -lblas -llapack -lsqlite3 -Wl,-Bstatic -lpthread -Wl,-Bdynamic -lz /usr/lib/x86_64-linux-gnu/liboflog.so.17.3.6.7 /usr/lib/x86_64-linux-gnu/libofstd.so.17.3.6.7 -lnsl -lpthread -lrt -lxml2 make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' [100%] Built target dlib_train -make[3]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' -[100%] Built target plastimatch make[2]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1' dh_auto_test - cd obj-x86_64-linux-gnu && make -j20 test ARGS\+=--verbose ARGS\+=-j20 + cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j20 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/DartConfiguration.tcl Add coverage exclude regular expressions. @@ -5690,95 +5726,12 @@ 27: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=ptv-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 27: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 27: Test timeout computed to be: 1500 -10: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -10: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10 -10: EXPECTED_ERRNO is -11: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -11: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10 -11: EXPECTED_ERRNO is -12: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -12: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;-1000;--gauss-center;10 0 0;--gauss-std;10 10 10 -12: EXPECTED_ERRNO is -14: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -14: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;20 0 0;--gauss-std;10 10 10 -14: EXPECTED_ERRNO is -29: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -29: PARMS is synth;--filenames-without-uids;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output-type;float;--output-dose-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--output-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000 -29: EXPECTED_ERRNO is -1: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -1: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha;--output-type;float;--pattern;rect;--origin;-25 -25 -25;--dim;40 40 40;--volume-size;50 50 50;--background;-1000;--foreground;-1000 -1: EXPECTED_ERRNO is -2: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -2: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--output-type;uchar;--pattern;cylinder;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--radius;10 -2: EXPECTED_ERRNO is -3: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -3: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -30 45 -3: EXPECTED_ERRNO is -5: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -5: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -45 40 -5: EXPECTED_ERRNO is -7: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -7: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--output-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--output-type;float;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;-1000;--foreground;0;--filenames-without-uids;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix/ -7: EXPECTED_ERRNO is -8: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -8: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--output-type;uchar;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;0;--foreground;1 -8: EXPECTED_ERRNO is -9: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -9: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--pattern;gabor;--origin;-5 -5 -5;--dim;11 11 11;--spacing;1 1 1;--gabor-k-fib;0 1;--gauss-center;0 0 0;--gauss-std;3 3 3;--background;0;--foreground;1 -9: EXPECTED_ERRNO is -13: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -13: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output-type;float;--pattern;gauss;--origin;+25 +25 -25;--dim;38 38 38;--spacing;-1.31579 -1.31579 2;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10 -13: EXPECTED_ERRNO is -15: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -15: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha;--output-type;float;--pattern;gauss;--origin;-15 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10 -15: EXPECTED_ERRNO is -17: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -17: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 -17: EXPECTED_ERRNO is -18: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -18: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 -18: EXPECTED_ERRNO is -19: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -19: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 -19: EXPECTED_ERRNO is -20: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -20: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 -20: EXPECTED_ERRNO is -21: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -21: PARMS is synth;--filenames-without-uids;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0 -21: EXPECTED_ERRNO is -27: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -27: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5 -27: EXPECTED_ERRNO is -14: RETVAL: 0 -14: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha -14: -14: STDERR: -2: RETVAL: 0 -2: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd -2: -2: STDERR: -12: RETVAL: 0 -12: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha -12: -12: STDERR: -12: Not an error -14: Not an error -11: RETVAL: 0 -11: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -11: -11: STDERR: - 1/578 Test #12: gauss-3 ............................... Passed 0.68 sec test 28 Start 28: ptv-2 28: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=ptv-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 28: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 28: Test timeout computed to be: 1500 -11: Not an error -2: Not an error - 2/578 Test #11: gauss-2 ............................... Passed 0.70 sec - 3/578 Test #14: gauss-5 ............................... Passed 0.68 sec test 30 Start 30: rect-2 @@ -5791,14 +5744,6 @@ 31: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-2s" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 31: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 31: Test timeout computed to be: 1500 -9: RETVAL: 0 -9: STDOUT: Gabor: 0 1 -> (0.000000 -1.570796) -> (-0.000000 -0.000000 -1.000000) -9: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha -9: -9: STDERR: -9: Not an error - 4/578 Test #2: cyl-1 ................................. Passed 0.66 sec - 5/578 Test #9: gabor-01 .............................. Passed 0.58 sec test 32 Start 32: rect-3 @@ -5811,43 +5756,6 @@ 33: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-4" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 33: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 33: Test timeout computed to be: 1500 -13: RETVAL: 0 -13: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha -13: -13: STDERR: -13: Not an error -8: RETVAL: 0 -8: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha -8: -8: STDERR: -8: Not an error -28: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -28: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5 -28: EXPECTED_ERRNO is -31: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -31: PARMS is synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha -31: EXPECTED_ERRNO is -19: RETVAL: 0 -19: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha -19: -19: STDERR: -19: Not an error -30: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -30: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids -30: EXPECTED_ERRNO is -1: RETVAL: 0 -1: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha -1: -1: STDERR: -1: Not an error -10: RETVAL: 0 -10: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -10: -10: STDERR: -10: Not an error - 6/578 Test #8: donut-2 ............................... Passed 0.66 sec - 7/578 Test #13: gauss-4 ............................... Passed 0.63 sec - 8/578 Test #19: gauss-ushort-1 ........................ Passed 0.56 sec test 34 Start 34: rect-5 @@ -5866,17 +5774,6 @@ 43: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11-roi" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 43: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 43: Test timeout computed to be: 1500 - 9/578 Test #1: black-1 ............................... Passed 0.80 sec - 10/578 Test #10: gauss-1 ............................... Passed 0.88 sec -3: RETVAL: 0 -3: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd -3: -3: STDERR: -3: Not an error -32: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -32: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids -32: EXPECTED_ERRNO is - 11/578 Test #3: cyl-mask-2 ............................ Passed 0.77 sec test 44 Start 44: rect-12 @@ -5895,213 +5792,437 @@ 46: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-14" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 46: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 46: Test timeout computed to be: 1500 -33: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -33: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 -33: EXPECTED_ERRNO is -40: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -40: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60 -40: EXPECTED_ERRNO is -34: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -34: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;-300 -150 -250;--direction-cosines;rotated-1 -34: EXPECTED_ERRNO is -5: RETVAL: 0 -5: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd -5: -5: STDERR: -5: Not an error -43: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -43: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80 -43: EXPECTED_ERRNO is - 12/578 Test #5: cyl-mask-3 ............................ Passed 0.80 sec test 47 Start 47: rect-15 47: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-15" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 47: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 47: Test timeout computed to be: 1500 -20: RETVAL: 0 -20: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha -20: -20: STDERR: -20: Not an error -45: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -45: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;11;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 -45: EXPECTED_ERRNO is -18: RETVAL: 0 -18: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha -18: -18: STDERR: -18: Not an error - 13/578 Test #20: gauss-ushort-2 ........................ Passed 0.70 sec test 48 Start 48: rect-16 48: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-16" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 48: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 48: Test timeout computed to be: 1500 -44: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -44: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 -44: EXPECTED_ERRNO is - 14/578 Test #18: gauss-double-2 ........................ Passed 0.75 sec test 49 Start 49: rect-17 49: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-17" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 49: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 49: Test timeout computed to be: 1500 -46: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -46: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5 -46: EXPECTED_ERRNO is -17: RETVAL: 0 -17: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha -17: -17: STDERR: -17: Not an error -47: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -47: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 -47: EXPECTED_ERRNO is -15: RETVAL: 0 -15: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha -15: -15: STDERR: - 15/578 Test #17: gauss-double-1 ........................ Passed 0.78 sec test 57 Start 57: rectarr-03-a 57: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 57: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 57: Test timeout computed to be: 1500 -15: Not an error -48: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -48: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 -48: EXPECTED_ERRNO is - 16/578 Test #15: gauss-6 ............................... Passed 0.83 sec test 62 Start 62: sphere-1 62: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 62: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 62: Test timeout computed to be: 1500 -27: RETVAL: 0 -27: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha -27: -27: STDERR: -27: Not an error -49: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -49: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5 -49: EXPECTED_ERRNO is - 17/578 Test #27: ptv-1 ................................. Passed 0.78 sec test 63 Start 63: sphere-2 63: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 63: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 63: Test timeout computed to be: 1500 -57: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -57: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 -57: EXPECTED_ERRNO is -62: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -62: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10 -62: EXPECTED_ERRNO is -63: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -63: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50 -63: EXPECTED_ERRNO is -31: RETVAL: 0 -31: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha -31: -31: STDERR: -31: Not an error - 18/578 Test #31: rect-2s ............................... Passed 0.50 sec test 64 Start 64: sphere-3 64: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-3" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 64: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 64: Test timeout computed to be: 1500 -43: RETVAL: 0 -43: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha -43: -43: STDERR: -43: Not an error - 19/578 Test #43: rect-11-roi ........................... Passed 0.43 sec test 66 Start 66: sphere-5 66: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-5" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 66: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 66: Test timeout computed to be: 1500 -28: RETVAL: 0 -28: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha -28: -28: STDERR: -28: Not an error -64: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -64: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 -64: EXPECTED_ERRNO is -66: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -66: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21 -66: EXPECTED_ERRNO is - 20/578 Test #28: ptv-2 ................................. Passed 0.65 sec test 72 Start 72: vf-zero 72: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 72: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 72: Test timeout computed to be: 1500 -72: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -72: PARMS is synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38 -72: EXPECTED_ERRNO is -33: RETVAL: 0 -33: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha -33: -33: STDERR: -33: Not an error - 21/578 Test #33: rect-4 ................................ Passed 0.67 sec test 73 Start 73: vf-trans-1 73: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 73: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 73: Test timeout computed to be: 1500 +test 74 + Start 74: vf-trans-2 + +74: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +74: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +74: Test timeout computed to be: 1500 +10: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +10: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10 +10: EXPECTED_ERRNO is +11: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +11: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10 +11: EXPECTED_ERRNO is +12: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +12: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;-1000;--gauss-center;10 0 0;--gauss-std;10 10 10 +12: EXPECTED_ERRNO is +14: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +14: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;20 0 0;--gauss-std;10 10 10 +14: EXPECTED_ERRNO is +29: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +29: PARMS is synth;--filenames-without-uids;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output-type;float;--output-dose-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--output-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000 +29: EXPECTED_ERRNO is +1: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +1: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha;--output-type;float;--pattern;rect;--origin;-25 -25 -25;--dim;40 40 40;--volume-size;50 50 50;--background;-1000;--foreground;-1000 +1: EXPECTED_ERRNO is +2: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +2: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--output-type;uchar;--pattern;cylinder;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--radius;10 +2: EXPECTED_ERRNO is +3: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +3: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -30 45 +3: EXPECTED_ERRNO is +5: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +5: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output-type;uchar;--pattern;rect;--origin;-19.5 -19.5 -49.5;--dim;40 40 100;--spacing;1 1 1;--background;0;--foreground;1;--rect-size;-20 20 -20 20 -45 40 +5: EXPECTED_ERRNO is +7: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +7: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--output-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--output-type;float;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;-1000;--foreground;0;--filenames-without-uids;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix/ +7: EXPECTED_ERRNO is +8: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +8: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--output-type;uchar;--pattern;donut;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--donut-radius;10 10 10;--background;0;--foreground;1 +8: EXPECTED_ERRNO is +9: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +9: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--pattern;gabor;--origin;-5 -5 -5;--dim;11 11 11;--spacing;1 1 1;--gabor-k-fib;0 1;--gauss-center;0 0 0;--gauss-std;3 3 3;--background;0;--foreground;1 +9: EXPECTED_ERRNO is +13: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +13: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output-type;float;--pattern;gauss;--origin;+25 +25 -25;--dim;38 38 38;--spacing;-1.31579 -1.31579 2;--background;-1000;--foreground;0;--gauss-center;0 0 0;--gauss-std;10 10 10 +13: EXPECTED_ERRNO is +15: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +15: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha;--output-type;float;--pattern;gauss;--origin;-15 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;10 10 10 +15: EXPECTED_ERRNO is +17: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +17: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 +17: EXPECTED_ERRNO is +18: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +18: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha;--output-type;double;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 +18: EXPECTED_ERRNO is +19: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +19: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;0 0 0;--gauss-std;10 10 10 +19: EXPECTED_ERRNO is +20: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +20: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha;--output-type;ushort;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;1000;--gauss-center;10 0 0;--gauss-std;10 10 10 +20: EXPECTED_ERRNO is +21: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +21: PARMS is synth;--filenames-without-uids;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom;--pattern;lung;--lung-tumor-pos;0 +21: EXPECTED_ERRNO is +27: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +27: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha;--pattern;rect;--dim;60 60 60;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;5 5 5 +27: EXPECTED_ERRNO is +28: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +28: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha;--pattern;rect;--dim;40 40 40;--background;0;--foreground;6;--rect-size;20 20 20;--origin;-100 -100 -100;--spacing;5 5 5 +28: EXPECTED_ERRNO is +30: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +30: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha;--output-type;float;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-2;--filenames-without-uids +30: EXPECTED_ERRNO is +31: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +31: PARMS is synth;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--spacing;13.158 13.158 13.158;--rect-size; 200 200 200;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha +31: EXPECTED_ERRNO is +32: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +32: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;float;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--patient-name;RECT^SYNTH;--patient-id;RECT-SYNTH;--series-description;rect-3;--filenames-without-uids +32: EXPECTED_ERRNO is +33: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +33: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 +33: EXPECTED_ERRNO is +34: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +34: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;-300 -150 -250;--direction-cosines;rotated-1 +34: EXPECTED_ERRNO is +40: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +40: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-60 60 -60 60 -60 60 +40: EXPECTED_ERRNO is +43: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +43: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-50 80 -50 80 -50 80 +43: EXPECTED_ERRNO is +44: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +44: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 +44: EXPECTED_ERRNO is +45: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +45: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;11;--rect-size;-4.5 4.5 -4.5 4.5 -4.5 4.5 +45: EXPECTED_ERRNO is +46: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +46: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha;--output-type;float;--pattern;rect;--dim;20 20 20;--origin;-9.5 -9.5 -9.5;--spacing;1 1 1;--background;0;--foreground;10;--rect-size;-2.5 6.5 -4.5 4.5 -4.5 4.5 +46: EXPECTED_ERRNO is +47: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +47: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 +47: EXPECTED_ERRNO is +48: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +48: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-30 70 -50 50 -50 50;--origin;243.421 243.421 -243.421;--spacing;13.1579 13.1579 13.1579;--direction-cosines;-1 0 0 0 -1 0 0 0 1 +48: EXPECTED_ERRNO is +49: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +49: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha;--pattern;rect;--dim;60 60 60;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;5 5 5 +49: EXPECTED_ERRNO is +57: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +57: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;0;--foreground;70;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 +57: EXPECTED_ERRNO is +62: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +62: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-type;uchar;--pattern;sphere;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;0;--foreground;255;--center;0 0 0;--radius;10 10 10 +62: EXPECTED_ERRNO is +63: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +63: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;50 50 50 +63: EXPECTED_ERRNO is +66: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +66: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha;--output-type;uchar;--pattern;sphere;--origin;-19 -19 -19;--dim;20 20 20;--spacing;2 2 2;--background;0;--foreground;1;--center;0 0 0;--radius;21 +66: EXPECTED_ERRNO is 73: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 73: PARMS is synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--xf-trans;10 0 0;--dim;38 38 38 73: EXPECTED_ERRNO is +64: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +64: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 +64: EXPECTED_ERRNO is +72: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +72: PARMS is synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--xf-zero;--dim;38 38 38 +72: EXPECTED_ERRNO is +74: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +74: PARMS is synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38 +74: EXPECTED_ERRNO is +5: RETVAL: 0 +5: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd +5: +5: STDERR: +15: RETVAL: 0 +15: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha +15: +15: STDERR: +3: RETVAL: 0 +3: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd +3: +3: STDERR: +5: Not an error +1: RETVAL: 0 +1: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha +1: +1: STDERR: +3: Not an error +14: RETVAL: 0 +14: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha +14: +14: STDERR: +1: Not an error +14: Not an error + 1/578 Test #5: cyl-mask-3 ............................ Passed 0.31 sec +test 530 + Start 530: plm-xf-convert-d + +530: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +530: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +530: Test timeout computed to be: 1500 +15: Not an error 49: RETVAL: 0 49: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha 49: 49: STDERR: 49: Not an error +28: RETVAL: 0 +28: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha +28: +28: STDERR: +28: Not an error +11: RETVAL: 0 +11: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +11: +11: STDERR: +11: Not an error +17: RETVAL: 0 +17: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha +17: +17: STDERR: +17: Not an error +12: RETVAL: 0 +12: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha +12: +12: STDERR: +12: Not an error +33: RETVAL: 0 +33: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha +33: +33: STDERR: +33: Not an error 40: RETVAL: 0 40: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha 40: 40: STDERR: 40: Not an error - 22/578 Test #49: rect-17 ............................... Passed 0.57 sec -test 74 - Start 74: vf-trans-2 - -74: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -74: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -74: Test timeout computed to be: 1500 +73: RETVAL: 0 +73: STDOUT: Setting header +73: Origin = -243.4211 -243.4211 -243.4211 +73: Size = 38 38 38 +73: Spacing = 13.1579 13.1579 13.1579 +73: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +73: Header was set +73: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha +73: +73: STDERR: +73: Not an error +31: RETVAL: 0 +31: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha +31: +31: STDERR: +31: Not an error +66: RETVAL: 0 +66: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha +66: +66: STDERR: +66: Not an error +8: RETVAL: 0 +8: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha +8: +8: STDERR: +8: Not an error +48: RETVAL: 0 +48: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha +48: +48: STDERR: +48: Not an error +47: RETVAL: 0 +47: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha +47: +47: STDERR: +47: Not an error +34: RETVAL: 0 +34: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha +34: +34: STDERR: +34: Not an error +72: RETVAL: 0 +72: STDOUT: Setting header +72: Origin = -243.4211 -243.4211 -243.4211 +72: Size = 38 38 38 +72: Spacing = 13.1579 13.1579 13.1579 +72: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +72: Header was set +72: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha +72: +72: STDERR: +72: Not an error +2: RETVAL: 0 +2: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd +2: +2: STDERR: +2: Not an error +9: RETVAL: 0 +9: STDOUT: Gabor: 0 1 -> (0.000000 -1.570796) -> (-0.000000 -0.000000 -1.000000) +9: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha +9: +9: STDERR: +9: Not an error +13: RETVAL: 0 +13: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha +13: +13: STDERR: +13: Not an error +27: RETVAL: 0 +27: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha +27: +27: STDERR: +27: Not an error +64: RETVAL: 0 +64: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha +64: +64: STDERR: +64: Not an error +62: RETVAL: 0 +62: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha +62: +62: STDERR: +62: Not an error +20: RETVAL: 0 +20: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-2.mha +20: +20: STDERR: +20: Not an error +10: RETVAL: 0 +10: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +10: +10: STDERR: +10: Not an error +44: RETVAL: 0 +44: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha +44: +44: STDERR: +44: Not an error +43: RETVAL: 0 +43: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha +43: +43: STDERR: +43: Not an error +63: RETVAL: 0 +63: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha +63: +63: STDERR: +63: Not an error 45: RETVAL: 0 45: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha 45: 45: STDERR: -45: Not an error - 23/578 Test #40: rect-10-roi-1 ......................... Passed 0.75 sec +57: RETVAL: 0 +57: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha +57: +57: STDERR: +74: RETVAL: 0 +74: STDOUT: Setting header +74: Origin = -243.4211 -243.4211 -243.4211 +74: Size = 38 38 38 +74: Spacing = 13.1579 13.1579 13.1579 +74: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +74: Header was set +74: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha +74: +74: STDERR: +19: RETVAL: 0 +19: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha +19: +19: STDERR: +18: RETVAL: 0 +18: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha +18: +18: STDERR: +46: RETVAL: 0 +46: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha +46: +46: STDERR: + 2/578 Test #10: gauss-1 ............................... Passed 0.37 sec + 3/578 Test #11: gauss-2 ............................... Passed 0.44 sec + 4/578 Test #12: gauss-3 ............................... Passed 0.44 sec + 5/578 Test #14: gauss-5 ............................... Passed 0.43 sec + 6/578 Test #1: black-1 ............................... Passed 0.43 sec + 7/578 Test #2: cyl-1 ................................. Passed 0.43 sec + 8/578 Test #3: cyl-mask-2 ............................ Passed 0.43 sec + 9/578 Test #8: donut-2 ............................... Passed 0.42 sec + 10/578 Test #9: gabor-01 .............................. Passed 0.42 sec + 11/578 Test #13: gauss-4 ............................... Passed 0.42 sec + 12/578 Test #15: gauss-6 ............................... Passed 0.42 sec + 13/578 Test #17: gauss-double-1 ........................ Passed 0.42 sec + 14/578 Test #20: gauss-ushort-2 ........................ Passed 0.41 sec + 15/578 Test #27: ptv-1 ................................. Passed 0.41 sec + 16/578 Test #28: ptv-2 ................................. Passed 0.41 sec + 17/578 Test #31: rect-2s ............................... Passed 0.40 sec + 18/578 Test #33: rect-4 ................................ Passed 0.40 sec + 19/578 Test #34: rect-5 ................................ Passed 0.39 sec + 20/578 Test #40: rect-10-roi-1 ......................... Passed 0.39 sec + 21/578 Test #44: rect-12 ............................... Passed 0.39 sec + 22/578 Test #47: rect-15 ............................... Passed 0.38 sec + 23/578 Test #48: rect-16 ............................... Passed 0.38 sec + 24/578 Test #49: rect-17 ............................... Passed 0.38 sec + 25/578 Test #62: sphere-1 .............................. Passed 0.37 sec + 26/578 Test #64: sphere-3 .............................. Passed 0.36 sec + 27/578 Test #66: sphere-5 .............................. Passed 0.36 sec + 28/578 Test #72: vf-zero ............................... Passed 0.36 sec + 29/578 Test #73: vf-trans-1 ............................ Passed 0.35 sec test 99 Start 99: drr-a 99: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 99: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 99: Test timeout computed to be: 1500 -47: RETVAL: 0 -47: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha -47: -47: STDERR: -47: Not an error - 24/578 Test #45: rect-13 ............................... Passed 0.72 sec - 25/578 Test #47: rect-15 ............................... Passed 0.70 sec test 285 Start 285: plm-reg-itk-translation @@ -6114,71 +6235,18 @@ 317: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 317: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 317: Test timeout computed to be: 1500 -74: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -74: PARMS is synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;--xf-trans;0 10 0;--dim;38 38 38 -74: EXPECTED_ERRNO is -99: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -99: PARMS is drr;-a;20;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -99: EXPECTED_ERRNO is -62: RETVAL: 0 -62: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha -62: -62: STDERR: -62: Not an error -44: RETVAL: 0 -44: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha -44: -44: STDERR: -44: Not an error - 26/578 Test #62: sphere-1 .............................. Passed 0.66 sec test 340 Start 340: plm-bsp-mi-c-2 340: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 340: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 340: Test timeout computed to be: 1500 - 27/578 Test #44: rect-12 ............................... Passed 0.84 sec test 443 Start 443: plm-reg-compose 443: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-compose" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-reg-compose.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 443: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 443: Test timeout computed to be: 1500 -46: RETVAL: 0 -46: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha -46: -46: STDERR: -46: Not an error -57: RETVAL: 0 -57: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha -57: -57: STDERR: -57: Not an error - 28/578 Test #57: rectarr-03-a .......................... Passed 0.72 sec -test 530 - Start 530: plm-xf-convert-d - -530: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -530: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -530: Test timeout computed to be: 1500 -34: RETVAL: 0 -34: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha -34: -34: STDERR: -34: Not an error -64: RETVAL: 0 -64: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha -64: -64: STDERR: -64: Not an error -48: RETVAL: 0 -48: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha -48: -48: STDERR: -48: Not an error - 29/578 Test #34: rect-5 ................................ Passed 0.95 sec - 30/578 Test #46: rect-14 ............................... Passed 0.85 sec - 31/578 Test #64: sphere-3 .............................. Passed 0.52 sec test 4 Start 4: cyl-2 @@ -6197,33 +6265,6 @@ 22: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=lung-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--filenames-without-uids;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 22: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 22: Test timeout computed to be: 1500 - 32/578 Test #48: rect-16 ............................... Passed 0.88 sec -340: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -340: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt -340: EXPECTED_ERRNO is -443: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -443: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-reg-compose.txt -443: EXPECTED_ERRNO is -285: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -285: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt -285: EXPECTED_ERRNO is -317: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -317: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt -317: EXPECTED_ERRNO is -7: RETVAL: 0 -7: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha -7: Converting from ITK_UCHAR to ITK_UCHAR_VEC -7: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha -7: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix//Foreground.mha -7: save_ss_img: save_ss_list -7: Done. -7: Doing extraction -7: Keyholizing structure 0. -7: Write: DoseGridScaling = 0.000000 -7: -7: STDERR: -7: Not an error - 33/578 Test #7: donut-1 ............................... Passed 1.72 sec test 37 Start 37: rect-8 @@ -6236,210 +6277,36 @@ 38: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-9" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 38: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 38: Test timeout computed to be: 1500 -530: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -530: PARMS is xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline -530: EXPECTED_ERRNO is -4: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -4: PARMS is mask;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd -4: EXPECTED_ERRNO is -73: RETVAL: 0 -73: STDOUT: Setting header -73: Origin = -243.4211 -243.4211 -243.4211 -73: Size = 38 38 38 -73: Spacing = 13.1579 13.1579 13.1579 -73: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -73: Header was set -73: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha -73: -73: STDERR: -73: Not an error -6: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -6: PARMS is mask;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd -6: EXPECTED_ERRNO is -63: RETVAL: 0 -63: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha -63: -63: STDERR: -63: Not an error - 34/578 Test #73: vf-trans-1 ............................ Passed 0.45 sec test 52 Start 52: rectarr-01-a 52: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;-1000;--foreground;0;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 52: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 52: Test timeout computed to be: 1500 -22: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -22: PARMS is synth;--filenames-without-uids;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5 -22: EXPECTED_ERRNO is - 35/578 Test #63: sphere-2 .............................. Passed 0.85 sec -test 58 - Start 58: rectarr-03 - -58: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -58: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -58: Test timeout computed to be: 1500 -29: RETVAL: 0 -29: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha -29: Converting from ITK_UCHAR to ITK_UCHAR_VEC -29: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha -29: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha -29: save_ss_img: save_ss_list -29: Done. -29: Doing extraction -29: Keyholizing structure 0. -29: Write: DoseGridScaling = 0.000000 -29: -29: STDERR: -29: Not an error -37: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -37: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-30 70 -50 50 -50 50 -37: EXPECTED_ERRNO is - 36/578 Test #29: rect-1 ................................ Passed 1.90 sec -test 187 - Start 187: plm-convert-dicom-a - -187: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -187: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -187: Test timeout computed to be: 1500 -38: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -38: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 -38: EXPECTED_ERRNO is -52: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -52: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;-1000;--foreground;0;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 -52: EXPECTED_ERRNO is -58: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -58: PARMS is synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5 -58: EXPECTED_ERRNO is -187: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -187: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix -187: EXPECTED_ERRNO is -66: RETVAL: 0 -66: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha -66: -66: STDERR: -66: Not an error - 37/578 Test #66: sphere-5 .............................. Passed 0.77 sec -test 59 - Start 59: rectarr-04 - -59: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-04" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -59: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -59: Test timeout computed to be: 1500 -72: RETVAL: 0 -72: STDOUT: Setting header -72: Origin = -243.4211 -243.4211 -243.4211 -72: Size = 38 38 38 -72: Spacing = 13.1579 13.1579 13.1579 -72: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -72: Header was set -72: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha -72: -72: STDERR: -72: Not an error - 38/578 Test #72: vf-zero ............................... Passed 0.74 sec test 67 Start 67: sphere-6 67: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-6" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 67: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 67: Test timeout computed to be: 1500 -59: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -59: PARMS is synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5 -59: EXPECTED_ERRNO is -67: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -67: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 -67: EXPECTED_ERRNO is -74: RETVAL: 0 -74: STDOUT: Setting header -74: Origin = -243.4211 -243.4211 -243.4211 -74: Size = 38 38 38 -74: Spacing = 13.1579 13.1579 13.1579 -74: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -74: Header was set -74: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha -74: -74: STDERR: -74: Not an error - 39/578 Test #74: vf-trans-2 ............................ Passed 0.75 sec test 68 Start 68: sphere-7 68: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-7" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 68: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 68: Test timeout computed to be: 1500 -30: RETVAL: 0 -30: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -30: Doing extraction -30: Keyholizing structure 0. -30: Write: DoseGridScaling = 0.000000 -30: -30: STDERR: -30: Not an error - 40/578 Test #30: rect-2 ................................ Passed 1.65 sec test 75 Start 75: vf-radial-1 75: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 75: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 75: Test timeout computed to be: 1500 -68: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -68: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 -68: EXPECTED_ERRNO is -75: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -75: PARMS is synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38 -75: EXPECTED_ERRNO is -32: RETVAL: 0 -32: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -32: Doing extraction -32: Keyholizing structure 0. -32: Write: DoseGridScaling = 0.000000 -32: -32: STDERR: -32: Not an error - 41/578 Test #32: rect-3 ................................ Passed 1.87 sec test 91 Start 91: plm-diff-a 91: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 91: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 91: Test timeout computed to be: 1500 -38: RETVAL: 0 -38: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha -38: -38: STDERR: -38: Not an error -37: RETVAL: 0 -37: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha -37: -37: STDERR: -530: RETVAL: 0 -530: STDOUT: bspline_xform_initialize -530: rdims = (2,2,2) -530: vox_per_rgn = (11,11,11) -530: cdims = (5 5 5) -530: about to xform_convert -530: did xform_convert -530: -530: STDERR: -91: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -91: PARMS is diff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha -91: EXPECTED_ERRNO is - 42/578 Test #38: rect-9 ................................ Passed 0.88 sec -test 94 - Start 94: plm-diff-b - -94: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -94: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -94: Test timeout computed to be: 1500 -4: RETVAL: 0 -4: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd -4: Finished! -4: -4: STDERR: -37: Not an error -530: Not an error - 43/578 Test #530: plm-xf-convert-d ...................... Passed 1.04 sec - 44/578 Test #37: rect-8 ................................ Passed 0.93 sec test 102 Start 102: drr-b @@ -6452,1011 +6319,518 @@ 105: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=drr;-a;20;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c/out_;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 105: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 105: Test timeout computed to be: 1500 -4: Not an error - 45/578 Test #4: cyl-2 ................................. Passed 1.05 sec -test 114 - Start 114: landmark-warp-a - -114: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -114: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -114: Test timeout computed to be: 1500 -102: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -102: PARMS is drr;-a;20;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -102: EXPECTED_ERRNO is -443: RETVAL: 0 -443: STDOUT: Loading fixed image [0]: gauss-2.mha -443: Loading moving image [0]: gauss-5.mha -443: Launching registration worker thread -443: Inside registration worker thread -443: Doing registration stage -443: [1] xf_in->m_type = 0, xf_out->m_type = 0 -443: RESAMPLE 1 1: (2 2 2), (2 2 2) -443: RESAMPLE 1 1: (2 2 2), (2 2 2) -443: volume_calc_grad complete. -443: bspline_xform_initialize -443: rdims = (2,2,2) -443: vox_per_rgn = (11,11,11) -443: cdims = (5 5 5) -443: Algorithm flavor = g -443: Threading = 0 -443: >> Checking JH allocation -443: BSPLINE PARMS -443: max_its = 10 -443: max_feval = 10 -443: BSPLINE XFORM HEADER -443: vox_per_rgn = 11 11 11 -443: roi_offset = 0 0 0 -443: roi_dim = 19 19 19 -443: img_dc = 1 0 0 0 1 0 0 0 1 -443: BST METRICS -443: MET 110100 MSE 1.000000 -443: Setting nmax, mmax = 375 21 -443: >>> START -443: This problem is unconstrained. -443: [ 0, 0] MSE 13049.518 NV 6859 GM -1702.194 GN 529 [ 0.066 s ] -443: CMIN 0.00 CAVG 0.00 CMAX 0.00 -443: LSD 0.00 -443: [ 0, 1] MSE 12469.547 NV 6859 GM -1637.952 GN 509 [ 0.028 s ] -443: CMIN -0.05 CAVG 0.01 CMAX 0.74 -443: LSD 1.00 -443: [ 0, 2] MSE 10357.764 NV 6859 GM -1646.825 GN 515 [ 0.036 s ] -443: CMIN -0.26 CAVG 0.04 CMAX 3.71 -443: LSD 5.00 -443: [ 0, 3] MSE 1944.747 NV 6295 GM -809.887 GN 247 [ 0.048 s ] -443: CMIN -1.11 CAVG 0.18 CMAX 15.56 -443: LSD 21.00 -443: [ 1, 4] MSE 891.268 NV 5678 GM 504.524 GN 187 [ 0.040 s ] -443: CMIN -1.50 CAVG 0.35 CMAX 29.17 -443: LSD 19.59 -443: [ 2, 5] MSE 117.931 NV 5939 GM -11.010 GN 12.8 [ 0.040 s ] -443: CMIN -1.27 CAVG 0.29 CMAX 23.54 -443: LSD 8.47 -443: [ 3, 6] MSE 110.217 NV 5931 GM -24.361 GN 9.26 [ 0.020 s ] -443: CMIN -1.44 CAVG 0.29 CMAX 23.60 -443: LSD 0.55 -443: [ 4, 7] MSE 101.235 NV 5928 GM -14.715 GN 10.7 [ 0.040 s ] -443: CMIN -1.88 CAVG 0.29 CMAX 23.41 -443: LSD 1.34 -443: [ 5, 8] MSE 89.096 NV 5930 GM -23.801 GN 14.1 [ 0.032 s ] -443: CMIN -2.79 CAVG 0.31 CMAX 22.44 -443: LSD 2.74 -443: [ 6, 9] MSE 76.413 NV 5947 GM 60.289 GN 16.9 [ 0.040 s ] -443: CMIN -4.30 CAVG 0.34 CMAX 20.28 -443: LSD 5.25 -443: [ 7, 10] MSE 68.670 NV 5976 GM -50.552 GN 14.5 [ 0.020 s ] -443: CMIN -6.00 CAVG 0.36 CMAX 17.22 -443: LSD 5.96 -443: [2] xf_out->m_type = 9, xf_in->m_type = 0 -443: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -443: bspline_xform_initialize -443: rdims = (2,2,2) -443: vox_per_rgn = (22,22,22) -443: cdims = (5 5 5) -443: ** Registration worker thread finished. -443: Writing transformation ... -443: Warping... -443: Running: plm_warp_native -443: Converting input image... -443: Converting xform... -443: bspline_xform_initialize -443: rdims = (2,2,2) -443: vox_per_rgn = (22,22,22) -443: cdims = (5 5 5) -443: Creating output vf... -443: Creating output volume... -443: Running native warper... -443: bspline_warp complete. -443: Back convert to original type... -443: > Convert vf to itk -443: > Conversion complete. -443: plm_warp_native is complete. -443: Saving image... -443: Trying to write image to plm-reg-compose-img.mha -443: Saving vf... -443: Trying to write image to plm-reg-compose-vf.mha -443: Load: 0.08956 -443: Run: 0.449348 -443: Save: 0.147223 -443: Total: 0.686131 -443: Finished! -443: -443: STDERR: -443: Not an error -52: RETVAL: 0 -52: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha -52: -52: STDERR: -52: Not an error -94: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -94: PARMS is diff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha -94: EXPECTED_ERRNO is - 46/578 Test #443: plm-reg-compose ....................... Passed 1.17 sec -test 119 - Start 119: landmark-warp-b - -119: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;wendland;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -119: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -119: Test timeout computed to be: 1500 -6: RETVAL: 0 -6: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd -6: Finished! -6: -6: STDERR: -6: Not an error -105: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -105: PARMS is drr;-a;20;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c/out_;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha -105: EXPECTED_ERRNO is -114: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -114: PARMS is lm-warp;-a;tps;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha -114: EXPECTED_ERRNO is -67: RETVAL: 0 -67: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha -67: -67: STDERR: -67: Not an error - 47/578 Test #6: cyl-3 ................................. Passed 1.12 sec - 48/578 Test #52: rectarr-01-a .......................... Passed 1.00 sec -test 124 - Start 124: landmark-warp-c - -124: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;gauss;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -124: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -124: Test timeout computed to be: 1500 -test 130 - Start 130: plm-add-a - -130: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -130: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -130: Test timeout computed to be: 1500 - 49/578 Test #67: sphere-6 .............................. Passed 0.87 sec -test 133 - Start 133: plm-add-b - -133: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -133: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -133: Test timeout computed to be: 1500 -119: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -119: PARMS is lm-warp;-a;wendland;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0 -119: EXPECTED_ERRNO is -133: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -133: PARMS is average;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -133: EXPECTED_ERRNO is -124: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -124: PARMS is lm-warp;-a;gauss;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0 -124: EXPECTED_ERRNO is -130: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -130: PARMS is add;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -130: EXPECTED_ERRNO is -59: RETVAL: 0 -59: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha -59: -59: STDERR: -59: Not an error - 50/578 Test #59: rectarr-04 ............................ Passed 1.05 sec test 136 Start 136: plm-add-vf-a 136: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 136: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 136: Test timeout computed to be: 1500 -285: RETVAL: 0 -285: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -285: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -285: Launching registration worker thread -285: Inside registration worker thread -285: Doing registration stage -285: [1] xf_in->m_type = 0, xf_out->m_type = 0 -285: Fixed image for this stage: -285: Dim = 19 19 19 -285: Origin = -24.3421 -24.3421 -24.3421 -285: Spacing = 2.63158 2.63158 2.63158 -285: Direction Cosines = -285: 1 0 0 -285: 0 1 0 -285: 0 0 1 -285: Moving image for this stage: -285: Dim = 19 19 19 -285: Origin = -24.3421 -24.3421 -24.3421 -285: Spacing = 2.63158 2.63158 2.63158 -285: Direction Cosines = -285: 1 0 0 -285: 0 1 0 -285: 0 0 1 -285: Initial Parameters = [0, 0, 0] -285: Starting ITK registration -285: StartEvent: [0, 0, 0] -285: MSE [ 0, 0,10.00] 18756.235 [9.999997615028182, -0.004883617032987322, -0.0048836170329867165] -285: :: [0, 0, 0] -285: * -285: MSE [ 1, 1, 5.00] 1.116 [5.318441699151487, 1.2366948554205888, 1.2366948554204333] -18755.12 -285: :: [9.999997615028182, -0.004883617032987322, -0.0048836170329867165] -285: * -285: MSE [ 2, 2, 2.50] 5544.602 [7.610651940085816, 0.5310844064631239, 0.5310844064630578] 5543.49 -285: MSE [ 3, 3, 2.50] 1453.699 [9.961460585442492, -0.0704547497505037, -0.07045474975049593] -4090.90 -285: MSE [ 4, 4, 1.25] 4.252 [10.130622373667428, 0.8052975809357099, 0.8052975809356439] -1449.45 -285: EndEvent: [10.130622373667428, 0.8052975809357099, 0.8052975809356439] -285: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. -285: ITK registration complete -285: [2] xf_out->m_type = 1, xf_in->m_type = 0 -285: ** Registration worker thread finished. -285: Writing transformation ... -285: Warping... -285: plm_warp_itk: xform_to_itk_vf -285: plm_warp_itk: convert_to_itk -285: plm_warp_itk: warping... -285: Saving image... -285: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha -285: Saving vf... -285: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha -285: Load: 0.316305 -285: Run: 0.199844 -285: Save: 0.0650499 -285: Total: 0.581199 -285: Finished! -285: -285: STDERR: -285: Not an error - 51/578 Test #285: plm-reg-itk-translation ............... Passed 1.49 sec -test 139 - Start 139: plm-add-vf-b - -139: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -139: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -139: Test timeout computed to be: 1500 -99: RETVAL: 0 -99: STDOUT: Rendering DRR 0 -99: I/O time: 0.000863 sec -99: Rendering DRR 1 -99: I/O time: 0.001102 sec -99: Rendering DRR 2 -99: I/O time: 0.000627 sec -99: Rendering DRR 3 -99: I/O time: 0.000643 sec -99: Rendering DRR 4 -99: I/O time: 0.000649 sec -99: Rendering DRR 5 -99: I/O time: 0.000630 sec -99: Rendering DRR 6 -99: I/O time: 0.000650 sec -99: Rendering DRR 7 -99: I/O time: 0.000799 sec -99: Rendering DRR 8 -99: I/O time: 0.000743 sec -99: Rendering DRR 9 -99: I/O time: 0.000598 sec -99: Rendering DRR 10 -99: I/O time: 0.035392 sec -99: Rendering DRR 11 -99: I/O time: 0.000703 sec -99: Rendering DRR 12 -99: I/O time: 0.000764 sec -99: Rendering DRR 13 -99: I/O time: 0.000813 sec -99: Rendering DRR 14 -99: I/O time: 0.000833 sec -99: Rendering DRR 15 -99: I/O time: 0.000756 sec -99: Rendering DRR 16 -99: I/O time: 0.000806 sec -99: Rendering DRR 17 -99: I/O time: 0.000803 sec -99: Rendering DRR 18 -99: I/O time: 0.000821 sec -99: Rendering DRR 19 -99: I/O time: 0.000705 sec -99: Total time: 0.759902 secs -99: -99: STDERR: -99: Not an error - 52/578 Test #99: drr-a ................................. Passed 1.55 sec -test 108 - Start 108: fdk-cpu-a - -108: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -108: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -108: Test timeout computed to be: 1500 -136: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -136: PARMS is add;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha -136: EXPECTED_ERRNO is -187: RETVAL: 0 -187: STDOUT: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648233.1717448213.382360RTSTRUCT -187: Found DCM_ReferencedFrameOfReferenceSequence! -187: Found DCM_RTReferencedStudySequence! -187: Trying to load rt structure set. -187: Adding structure (1), Foreground -187: Structure 1 has color 255\0\0 -187: Setting PIH from rasterization heuristicsPIH is: -187: Origin = -55.2632 -55.2632 -46.0526 -187: Size = 512 512 7 -187: Spacing = 0.2159 0.2159 13.1579 -187: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -187: Rt_study_warp: Convert ss_img to cxt. -187: Rt_study_warp: Apply dicom_dir. -187: Rt_study_warp: Set geometry from PIH. -187: Rt_study_warp: Set rasterization geometry. -187: rast_dim = 512 512 7 -187: rast_offset = -55.2632 -55.2632 -46.0526 -187: rast_spacing = 0.215872 0.215872 13.1579 -187: Rt_study_warp: warp and save ss. -187: Warp_and_save_ss: seg->rasterize -187: Rasterizing... -187: Converting... -187: Finished rasterization. -187: Warp_and_save_ss: save_ss_img -187: save_ss_img: save_ss_image -187: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha -187: save_ss_img: save_ss_list -187: Done. -187: save_ss_img: save_prefix -187: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix/Foreground.mha -187: save_ss_img: save_cxt -187: Finished! -187: -187: STDERR: -187: Not an error -108: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -108: PARMS is fdk;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha -108: EXPECTED_ERRNO is -139: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -139: PARMS is average;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha -139: EXPECTED_ERRNO is - 53/578 Test #187: plm-convert-dicom-a ................... Passed 1.26 sec -test 111 - Start 111: fdk-cpu-d - -111: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -111: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -111: Test timeout computed to be: 1500 -58: RETVAL: 0 -58: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha -58: -58: STDERR: -58: Not an error - 54/578 Test #58: rectarr-03 ............................ Passed 1.33 sec test 142 Start 142: plm-adjust-a 142: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 142: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 142: Test timeout computed to be: 1500 -111: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -111: PARMS is fdk;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha -111: EXPECTED_ERRNO is -317: RETVAL: 0 -317: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -317: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -317: Launching registration worker thread -317: Inside registration worker thread -317: Doing registration stage -317: [1] xf_in->m_type = 0, xf_out->m_type = 0 -317: RESAMPLE 1 1: (2 2 2), (2 2 2) -317: RESAMPLE 1 1: (2 2 2), (2 2 2) -317: volume_calc_grad complete. -317: bspline_xform_initialize -317: rdims = (2,2,2) -317: vox_per_rgn = (11,11,11) -317: cdims = (5 5 5) -317: Algorithm flavor = h -317: Threading = 0 -317: >> Checking JH allocation -317: BSPLINE PARMS -317: max_its = 5 -317: max_feval = 5 -317: BSPLINE XFORM HEADER -317: vox_per_rgn = 11 11 11 -317: roi_offset = 0 0 0 -317: roi_dim = 19 19 19 -317: img_dc = 1 0 0 0 1 0 0 0 1 -317: BST METRICS -317: MET 110100 MSE 1.000000 -317: Setting nmax, mmax = 375 21 -317: >>> START -317: This problem is unconstrained. -317: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.019 s ] -317: CMIN 0.00 CAVG 0.00 CMAX 0.00 -317: LSD 0.00 -317: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.019 s ] -317: CMIN -0.07 CAVG 0.01 CMAX 0.68 -317: LSD 1.00 -317: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.015 s ] -317: CMIN -0.35 CAVG 0.05 CMAX 3.40 -317: LSD 5.00 -317: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.015 s ] -317: CMIN -1.48 CAVG 0.20 CMAX 14.26 -317: LSD 21.00 -317: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.003 s ] -317: CMIN -1.74 CAVG 0.44 CMAX 32.50 -317: LSD 27.95 -317: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.016 s ] -317: CMIN -1.73 CAVG 0.34 CMAX 23.99 -317: LSD 13.11 -317: [2] xf_out->m_type = 9, xf_in->m_type = 0 -317: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -317: bspline_xform_initialize -317: rdims = (2,2,2) -317: vox_per_rgn = (22,22,22) -317: cdims = (5 5 5) -317: ** Registration worker thread finished. -317: Writing transformation ... -317: Warping... -317: Running: plm_warp_native -317: Converting input image... -317: Converting xform... -317: bspline_xform_initialize -317: rdims = (2,2,2) -317: vox_per_rgn = (22,22,22) -317: cdims = (5 5 5) -317: Creating output vf... -317: Creating output volume... -317: Running native warper... -317: bspline_warp complete. -317: Back convert to original type... -317: > Convert vf to itk -317: > Conversion complete. -317: plm_warp_native is complete. -317: Saving image... -317: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha -317: Saving vf... -317: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-vf.mha -317: Load: 0.346051 -317: Run: 0.147232 -317: Save: 0.115161 -317: Total: 0.608444 -317: Finished! -317: -317: STDERR: -317: Not an error - 55/578 Test #317: plm-bsp-mse-h ......................... Passed 1.66 sec test 145 Start 145: plm-adjust-b 145: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 145: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 145: Test timeout computed to be: 1500 -142: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -142: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100 -142: EXPECTED_ERRNO is -68: RETVAL: 0 -68: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha -68: -68: STDERR: -68: Not an error - 56/578 Test #68: sphere-7 .............................. Passed 1.04 sec test 148 Start 148: plm-adjust-c 148: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 148: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 148: Test timeout computed to be: 1500 -145: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -145: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1 -145: EXPECTED_ERRNO is -148: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -148: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1 -148: EXPECTED_ERRNO is -124: RETVAL: 0 -124: STDOUT: 74.000000 -124: 74.000000 -124: 74.000000 -124: 74.000000 -124: 74.000000 -124: 74.000000 -124: 74.000000 -124: 74.000000 -124: coeff 0 -14.4830 0.0226 -0.0000 -124: coeff 1 -6.4591 0.0989 0.0000 -124: coeff 2 -5.6641 0.8767 0.0000 -124: coeff 3 -15.5832 -0.6135 0.0000 -124: coeff 4 -15.3769 -0.1107 0.0000 -124: coeff 5 -6.4169 1.0717 -0.0000 -124: coeff 6 -6.5309 -0.1220 0.0000 -124: coeff 7 -16.0092 -0.1893 -0.0000 -124: Creating output vf -124: Rendering vector field -124: Gauss RBF, updating the vector field -124: Converting volume to float -124: Creating output vol -124: Warping image -124: Direction cosines: vin = 1.000000 0.000000 0.000000 ... -124: vf = 1.000000 0.000000 0.000000 ... -124: spac: vin = 13.157895 13.157895 13.157895 ... -124: vf = 13.157895 13.157895 13.157895 ... -124: proj: vin = 0.076000 -0.000000 0.000000 ... -124: vf = 0.076000 -0.000000 0.000000 ... -124: step: vin = 13.157895 0.000000 0.000000 ... -124: vf = 13.157895 0.000000 0.000000 ... -124: Freeing coeff -124: Done with rbf_gauss_warp -124: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha -124: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha -124: -124: STDERR: -124: Not an error - 57/578 Test #124: landmark-warp-c ....................... Passed 0.51 sec test 151 Start 151: plm-adjust-d 151: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 151: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 151: Test timeout computed to be: 1500 -133: RETVAL: 0 -133: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd -133: -133: STDERR: -133: Not an error -75: RETVAL: 0 -75: STDOUT: Setting header -75: Origin = -243.4211 -243.4211 -243.4211 -75: Size = 38 38 38 -75: Spacing = 13.1579 13.1579 13.1579 -75: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -75: Header was set -75: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha -75: -75: STDERR: -75: Not an error - 58/578 Test #133: plm-add-b ............................. Passed 0.49 sec test 154 Start 154: plm-adjust-e 154: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 154: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 154: Test timeout computed to be: 1500 - 59/578 Test #75: vf-radial-1 ........................... Passed 1.10 sec test 157 Start 157: plm-adjust-f 157: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 157: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 157: Test timeout computed to be: 1500 -154: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -154: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5 -154: EXPECTED_ERRNO is -151: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -94: RETVAL: 0 -94: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha -94: -94: STDERR: -94: Not an error -151: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0 -151: EXPECTED_ERRNO is - 60/578 Test #94: plm-diff-b ............................ Passed 0.80 sec test 160 Start 160: plm-adjust-g 160: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 160: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 160: Test timeout computed to be: 1500 -157: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -157: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5 -157: EXPECTED_ERRNO is -160: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -160: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha -160: EXPECTED_ERRNO is -114: RETVAL: 0 -114: STDOUT: Hello world -114: Gonna convert pointsets -114: Pointset: -114: rect-2-0 -26.271700 -52.162899 46.052799 -114: rect-2-1 65.870201 -52.543598 46.053001 -114: rect-2-2 65.870201 52.543900 46.053001 -114: rect-2-3 -25.510201 53.686199 46.053001 -114: rect-2-4 -25.891001 -52.162899 -46.052502 -114: rect-2-5 66.631699 -53.305099 -46.053001 -114: rect-2-6 65.870201 53.305401 -46.053001 -114: rect-2-7 -25.129499 53.686199 -46.053001 -114: Conversion complete. -114: -26.2717 -52.1629 46.0528 -114: 65.8702 -52.5436 46.053 -114: 65.8702 52.5439 46.053 -114: -25.5102 53.6862 46.053 -114: -25.891 -52.1629 -46.0525 -114: 66.6317 -53.3051 -46.053 -114: 65.8702 53.3054 -46.053 -114: -25.1295 53.6862 -46.053 -114: Setting landmarks to TPS -114: Computing matrix -114: Setting xform -114: Converting to VF -114: Warping... -114: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha -114: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha -114: -114: STDERR: -114: Not an error - 61/578 Test #114: landmark-warp-a ....................... Passed 0.91 sec test 163 Start 163: plm-adjust-h 163: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-h" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 163: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 163: Test timeout computed to be: 1500 -130: RETVAL: 0 -130: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd -130: -130: STDERR: -130: Not an error - 62/578 Test #130: plm-add-a ............................. Passed 0.84 sec test 166 Start 166: plm-adjust-i 166: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 166: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 166: Test timeout computed to be: 1500 -91: RETVAL: 0 -91: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha -91: -91: STDERR: -91: Not an error - 63/578 Test #91: plm-diff-a ............................ Passed 1.19 sec test 169 Start 169: plm-adjust-j 169: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 169: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 169: Test timeout computed to be: 1500 -119: RETVAL: 0 -119: STDOUT: 180.000000 -119: 180.000000 -119: 180.000000 -119: 180.000000 -119: 180.000000 -119: 180.000000 -119: 180.000000 -119: 180.000000 -119: coeff 0 -18.4133 0.0962 0.0000 -119: coeff 1 -7.5271 -0.0286 0.0000 -119: coeff 2 -6.1678 1.3625 -0.0000 -119: coeff 3 -20.1368 -0.9723 0.0000 -119: coeff 4 -19.7774 -0.2570 -0.0000 -119: coeff 5 -7.3050 1.5884 0.0000 -119: coeff 6 -7.4759 -0.3261 -0.0000 -119: coeff 7 -20.6523 -0.1769 -0.0000 -119: Creating output vf -119: Rendering vector field -119: Wendland RBF, updating the vector field -119: Converting volume to float -119: Creating output vol -119: Warping image -119: Direction cosines: vin = 1.000000 0.000000 0.000000 ... -119: vf = 1.000000 0.000000 0.000000 ... -119: spac: vin = 13.157895 13.157895 13.157895 ... -119: vf = 13.157895 13.157895 13.157895 ... -119: proj: vin = 0.076000 -0.000000 0.000000 ... -119: vf = 0.076000 -0.000000 0.000000 ... -119: step: vin = 13.157895 0.000000 0.000000 ... -119: vf = 13.157895 0.000000 0.000000 ... -119: Freeing coeff -119: Done with rbf_wendland_warp -119: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha -119: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha -119: -119: STDERR: -119: Not an error -163: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -163: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha -163: EXPECTED_ERRNO is - 64/578 Test #119: landmark-warp-b ....................... Passed 1.01 sec + 30/578 Test #43: rect-11-roi ........................... Passed 0.46 sec + 31/578 Test #63: sphere-2 .............................. Passed 0.44 sec +45: Not an error + 32/578 Test #45: rect-13 ............................... Passed 0.46 sec +57: Not an error + 33/578 Test #57: rectarr-03-a .......................... Passed 0.45 sec +74: Not an error + 34/578 Test #74: vf-trans-2 ............................ Passed 0.42 sec +19: Not an error + 35/578 Test #19: gauss-ushort-1 ........................ Passed 0.49 sec +18: Not an error + 36/578 Test #18: gauss-double-2 ........................ Passed 0.49 sec +46: Not an error + 37/578 Test #46: rect-14 ............................... Passed 0.46 sec +530: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +530: PARMS is xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-type;itk_bspline +530: EXPECTED_ERRNO is +29: RETVAL: 0 +29: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha +29: Converting from ITK_UCHAR to ITK_UCHAR_VEC +29: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha +29: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha +29: save_ss_img: save_ss_list +29: Done. +29: Doing extraction +29: Keyholizing structure 0. +29: Write: DoseGridScaling = 0.000000 +29: +29: STDERR: +29: Not an error +32: RETVAL: 0 +32: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +32: Doing extraction +32: Keyholizing structure 0. +32: Write: DoseGridScaling = 0.000000 +32: +32: STDERR: +32: Not an error +30: RETVAL: 0 +30: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +30: Doing extraction +30: Keyholizing structure 0. +30: Write: DoseGridScaling = 0.000000 +30: +30: STDERR: +30: Not an error +7: RETVAL: 0 +7: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha +7: Converting from ITK_UCHAR to ITK_UCHAR_VEC +7: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha +7: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-prefix//Foreground.mha +7: save_ss_img: save_ss_list +7: Done. +7: Doing extraction +7: Keyholizing structure 0. +7: Write: DoseGridScaling = 0.000000 +7: +7: STDERR: +7: Not an error +99: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +99: PARMS is drr;-a;20;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +99: EXPECTED_ERRNO is +285: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +285: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation.txt +285: EXPECTED_ERRNO is +317: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +317: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h.txt +317: EXPECTED_ERRNO is +340: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +340: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2.txt +340: EXPECTED_ERRNO is +443: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +443: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-reg-compose.txt +443: EXPECTED_ERRNO is +4: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +4: PARMS is mask;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-2.nrrd;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd +4: EXPECTED_ERRNO is +6: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +6: PARMS is mask;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-1.nrrd;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-mask-3.nrrd;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd +6: EXPECTED_ERRNO is +22: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +22: PARMS is synth;--filenames-without-uids;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2-dicom;--pattern;lung;--lung-tumor-pos;-5 +22: EXPECTED_ERRNO is +37: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +37: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-30 70 -50 50 -50 50 +37: EXPECTED_ERRNO is +38: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +38: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha;--output-type;uchar;--pattern;rect;--dim;47 47 47;--background;0;--foreground;1;--rect-size;-50 50 -50 50 -50 50 +38: EXPECTED_ERRNO is +52: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +52: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output-type;float;--pattern;rect;--dim;30 50 30;--background;-1000;--foreground;0;--rect-size;-5 5 -15 -5 -5 5;--origin;-14.5 -24.5 -14.5;--spacing;1 1 1 +52: EXPECTED_ERRNO is +67: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +67: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 +67: EXPECTED_ERRNO is +68: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +68: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--output-type;uchar;--pattern;sphere;--dim;38 38 38;--background;0;--foreground;1;--center;0 0 0;--radius;50 50 50 +68: EXPECTED_ERRNO is +75: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +75: PARMS is synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha;--xf-radial;--radial-center;0 0 0;--radial-mag;10;--dim;38 38 38 +75: EXPECTED_ERRNO is +91: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +91: PARMS is diff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha +91: EXPECTED_ERRNO is +102: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +102: PARMS is drr;-a;20;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b/out_;-i;uniform;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +102: EXPECTED_ERRNO is +105: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +105: PARMS is drr;-a;20;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c/out_;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha +105: EXPECTED_ERRNO is +136: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +136: PARMS is add;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha +136: EXPECTED_ERRNO is +142: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +142: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd;--pw-linear;0,100 +142: EXPECTED_ERRNO is +145: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +145: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd;--pw-linear;-inf,1,0,100,inf,1 +145: EXPECTED_ERRNO is +148: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +148: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd;--linear;100,1 +148: EXPECTED_ERRNO is +151: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +151: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd;--pw-linear;-inf,0,-800,-800,-600,-600,inf,0 +151: EXPECTED_ERRNO is +154: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +154: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd;--linear;1000,2.5 +154: EXPECTED_ERRNO is + 38/578 Test #29: rect-1 ................................ Passed 0.51 sec + 39/578 Test #7: donut-1 ............................... Passed 0.50 sec + 40/578 Test #30: rect-2 ................................ Passed 0.48 sec + 41/578 Test #32: rect-3 ................................ Passed 0.48 sec +test 187 + Start 187: plm-convert-dicom-a + +187: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +187: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +187: Test timeout computed to be: 1500 +test 58 + Start 58: rectarr-03 + +58: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-03" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +58: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +58: Test timeout computed to be: 1500 +test 59 + Start 59: rectarr-04 + +59: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-04" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +59: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +59: Test timeout computed to be: 1500 +test 94 + Start 94: plm-diff-b + +94: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=diff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +94: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +94: Test timeout computed to be: 1500 +test 114 + Start 114: landmark-warp-a + +114: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +114: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +114: Test timeout computed to be: 1500 +test 119 + Start 119: landmark-warp-b + +119: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;wendland;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +119: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +119: Test timeout computed to be: 1500 +test 124 + Start 124: landmark-warp-c + +124: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;gauss;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +124: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +124: Test timeout computed to be: 1500 +test 130 + Start 130: plm-add-a + +130: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=add;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +130: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +130: Test timeout computed to be: 1500 +test 133 + Start 133: plm-add-b + +133: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +133: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +133: Test timeout computed to be: 1500 +test 139 + Start 139: plm-add-vf-b + +139: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=average;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +139: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +139: Test timeout computed to be: 1500 test 172 Start 172: plm-boundary-a 172: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;adaptive;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 172: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 172: Test timeout computed to be: 1500 +test 175 + Start 175: plm-boundary-b + +175: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;zero-pad;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +175: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +175: Test timeout computed to be: 1500 +530: RETVAL: 0 +530: STDOUT: bspline_xform_initialize +530: rdims = (2,2,2) +530: vox_per_rgn = (11,11,11) +530: cdims = (5 5 5) +530: about to xform_convert +530: did xform_convert +530: +530: STDERR: +530: Not an error +160: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +160: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd;--linear-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha +160: EXPECTED_ERRNO is +157: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +157: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd;--hist-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--hist-levels;128;--hist-points;5 +157: EXPECTED_ERRNO is +163: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +163: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd;--linear-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gabor-01.mha;--input-mask;donut-2.mha +163: EXPECTED_ERRNO is 166: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 166: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd;--local-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd;--local-shift-out;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd 166: EXPECTED_ERRNO is -136: RETVAL: 0 -136: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd -136: -136: STDERR: -136: Not an error 169: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 169: PARMS is adjust;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd;--local-match;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha;--patch-size;3 3 3;--ref-mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha;--local-scale-out;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd;--local-shift-out;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd;--local-blending-off 169: EXPECTED_ERRNO is - 65/578 Test #136: plm-add-vf-a .......................... Passed 0.92 sec -test 175 - Start 175: plm-boundary-b +187: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +187: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha;--output-ss-list;plm-convert-dicom-a-ss.txt;--output-cxt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix +187: EXPECTED_ERRNO is +58: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +58: PARMS is synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-5 5 5 15 -5 5 +58: EXPECTED_ERRNO is +59: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +59: PARMS is synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha;--output-type;float;--pattern;rect;--background;0;--foreground;50;--rect-size;-10 0 5 15 -5 5 +59: EXPECTED_ERRNO is +94: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +94: PARMS is diff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha +94: EXPECTED_ERRNO is +114: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +114: PARMS is lm-warp;-a;tps;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha +114: EXPECTED_ERRNO is +119: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +119: PARMS is lm-warp;-a;wendland;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha;-r;90;-d;0;-Y;0.0 +119: EXPECTED_ERRNO is +124: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +124: PARMS is lm-warp;-a;gauss;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;-r;74;-d;0;-Y;1.0 +124: EXPECTED_ERRNO is +130: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +130: PARMS is add;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +130: EXPECTED_ERRNO is +133: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +133: PARMS is average;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +133: EXPECTED_ERRNO is + 42/578 Test #530: plm-xf-convert-d ...................... Passed 0.24 sec +test 178 + Start 178: plm-boundary-c -175: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;zero-pad;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -175: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -175: Test timeout computed to be: 1500 +178: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +178: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +178: Test timeout computed to be: 1500 172: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 172: PARMS is boundary;--boundary-behavior;adaptive;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha 172: EXPECTED_ERRNO is +139: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +139: PARMS is average;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha +139: EXPECTED_ERRNO is +178: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +178: PARMS is boundary;--boundary-behavior;edge-pad;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha +178: EXPECTED_ERRNO is 175: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 175: PARMS is boundary;--boundary-behavior;zero-pad;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha 175: EXPECTED_ERRNO is -139: RETVAL: 0 -139: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd -139: -139: STDERR: -139: Not an error - 66/578 Test #139: plm-add-vf-b .......................... Passed 1.11 sec -test 178 - Start 178: plm-boundary-c - -178: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -178: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -178: Test timeout computed to be: 1500 -105: RETVAL: 0 -105: STDOUT: Rendering DRR 0 -105: I/O time: 0.000787 sec -105: Rendering DRR 1 -105: I/O time: 0.001315 sec -105: Rendering DRR 2 -105: I/O time: 0.000530 sec -105: Rendering DRR 3 -105: I/O time: 0.000724 sec -105: Rendering DRR 4 -105: I/O time: 0.000759 sec -105: Rendering DRR 5 -105: I/O time: 0.000575 sec -105: Rendering DRR 6 -105: I/O time: 0.000710 sec -105: Rendering DRR 7 -105: I/O time: 0.000771 sec -105: Rendering DRR 8 -105: I/O time: 0.000793 sec -105: Rendering DRR 9 -105: I/O time: 0.000677 sec -105: Rendering DRR 10 -105: I/O time: 0.000628 sec -105: Rendering DRR 11 -105: I/O time: 0.000758 sec -105: Rendering DRR 12 -105: I/O time: 0.000720 sec -105: Rendering DRR 13 -105: I/O time: 0.000911 sec -105: Rendering DRR 14 -105: I/O time: 0.000758 sec -105: Rendering DRR 15 -105: I/O time: 0.000624 sec -105: Rendering DRR 16 -105: I/O time: 0.000656 sec -105: Rendering DRR 17 -105: I/O time: 0.000646 sec -105: Rendering DRR 18 -105: I/O time: 0.016870 sec -105: Rendering DRR 19 -105: I/O time: 0.000651 sec -105: Total time: 0.739134 secs -105: -105: STDERR: -105: Not an error - 67/578 Test #105: drr-c ................................. Passed 1.45 sec +75: RETVAL: 0 +75: STDOUT: Setting header +75: Origin = -243.4211 -243.4211 -243.4211 +75: Size = 38 38 38 +75: Spacing = 13.1579 13.1579 13.1579 +75: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +75: Header was set +75: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha +75: +75: STDERR: +75: Not an error +68: RETVAL: 0 +68: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha +68: +68: STDERR: +68: Not an error + 43/578 Test #75: vf-radial-1 ........................... Passed 0.26 sec test 181 Start 181: plm-boundary-d 181: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 181: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 181: Test timeout computed to be: 1500 -178: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -178: PARMS is boundary;--boundary-behavior;edge-pad;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha -178: EXPECTED_ERRNO is -181: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -181: PARMS is boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha -181: EXPECTED_ERRNO is -102: RETVAL: 0 -102: STDOUT: Rendering DRR 0 -102: I/O time: 0.000725 sec -102: Rendering DRR 1 -102: I/O time: 0.001099 sec -102: Rendering DRR 2 -102: I/O time: 0.000543 sec -102: Rendering DRR 3 -102: I/O time: 0.000515 sec -102: Rendering DRR 4 -102: I/O time: 0.000497 sec -102: Rendering DRR 5 -102: I/O time: 0.000577 sec -102: Rendering DRR 6 -102: I/O time: 0.000587 sec -102: Rendering DRR 7 -102: I/O time: 0.000514 sec -102: Rendering DRR 8 -102: I/O time: 0.000643 sec -102: Rendering DRR 9 -102: I/O time: 0.000458 sec -102: Rendering DRR 10 -102: I/O time: 0.000546 sec -102: Rendering DRR 11 -102: I/O time: 0.000663 sec -102: Rendering DRR 12 -102: I/O time: 0.000602 sec -102: Rendering DRR 13 -102: I/O time: 0.000675 sec -102: Rendering DRR 14 -102: I/O time: 0.000473 sec -102: Rendering DRR 15 -102: I/O time: 0.000628 sec -102: Rendering DRR 16 -102: I/O time: 0.000692 sec -102: Rendering DRR 17 -102: I/O time: 0.000646 sec -102: Rendering DRR 18 -102: I/O time: 0.000566 sec -102: Rendering DRR 19 -102: I/O time: 0.000734 sec -102: Total time: 0.799445 secs -102: -102: STDERR: -102: Not an error - 68/578 Test #102: drr-b ................................. Passed 1.57 sec +38: RETVAL: 0 +38: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha +38: +38: STDERR: +38: Not an error +52: RETVAL: 0 +52: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha +52: +52: STDERR: +52: Not an error +37: RETVAL: 0 +37: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha +37: +37: STDERR: +67: RETVAL: 0 +67: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha +67: +67: STDERR: +37: Not an error +148: RETVAL: 0 +148: STDOUT: Applying shift=100 and scale=1 ... done. +148: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd +148: Finished! +148: +148: STDERR: +151: RETVAL: 0 +151: STDOUT: Applying piece-wise linear transform... +151: done. +151: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd +151: Finished! +151: +151: STDERR: +151: Not an error + 44/578 Test #38: rect-9 ................................ Passed 0.28 sec + 45/578 Test #52: rectarr-01-a .......................... Passed 0.28 sec + 46/578 Test #68: sphere-7 .............................. Passed 0.28 sec test 184 Start 184: plm-boundary-e 184: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 184: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 184: Test timeout computed to be: 1500 -184: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -184: PARMS is boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha -184: EXPECTED_ERRNO is -157: RETVAL: 0 -157: STDOUT: Performing histogram matching... -157: done. -157: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd -157: Finished! -157: -157: STDERR: -157: Not an error - 69/578 Test #157: plm-adjust-f .......................... Passed 0.99 sec test 190 Start 190: plm-convert-dicom-b 190: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 190: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 190: Test timeout computed to be: 1500 -190: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -190: PARMS is convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS -190: EXPECTED_ERRNO is -172: RETVAL: 0 -172: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd -172: -172: STDERR: -172: Not an error - 70/578 Test #172: plm-boundary-a ........................ Passed 0.66 sec test 199 Start 199: plm-convert-dicom-donut-a 199: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 199: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 199: Test timeout computed to be: 1500 -175: RETVAL: 0 -175: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd -175: -175: STDERR: -175: Not an error -154: RETVAL: 0 -154: STDOUT: Applying shift=1000 and scale=2.5 ... done. -154: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd -154: Finished! -154: -154: STDERR: -154: Not an error - 71/578 Test #175: plm-boundary-b ........................ Passed 0.56 sec +148: Not an error +6: RETVAL: 0 +6: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd +6: Finished! +6: +6: STDERR: +6: Not an error +67: Not an error +145: RETVAL: 0 +145: STDOUT: Applying piece-wise linear transform... +145: done. +145: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd +145: Finished! +145: +145: STDERR: +145: Not an error +181: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +181: PARMS is boundary;--boundary-behavior;adaptive;--boundary-type;interior-face;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha +181: EXPECTED_ERRNO is +163: RETVAL: 0 +163: STDOUT: Computing statistics for linear match... +163: Time = 0.002809 seconds +163: Adjusting image. shift = 0.158838; scale = 0.000442518 done. +163: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd +163: Finished! +163: +163: STDERR: +163: Not an error + 47/578 Test #6: cyl-3 ................................. Passed 0.30 sec + 48/578 Test #37: rect-8 ................................ Passed 0.30 sec + 49/578 Test #67: sphere-6 .............................. Passed 0.29 sec + 50/578 Test #145: plm-adjust-b .......................... Passed 0.27 sec test 202 Start 202: plm-convert-dicom-donut-b 202: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 202: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 202: Test timeout computed to be: 1500 - 72/578 Test #154: plm-adjust-e .......................... Passed 1.16 sec -test 206 - Start 206: plm-convert-cxt - -206: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -206: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -206: Test timeout computed to be: 1500 -199: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -199: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd -199: EXPECTED_ERRNO is -202: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -202: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours -202: EXPECTED_ERRNO is -160: RETVAL: 0 -160: STDOUT: Computing statistics for linear match... -160: Adjusting image. shift = 0.289174; scale = 0.000314475 done. -160: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd -160: Finished! -160: -160: STDERR: -160: Not an error -151: RETVAL: 0 -151: STDOUT: Applying piece-wise linear transform... -151: done. -151: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd -151: Finished! -151: -151: STDERR: -151: Not an error - 73/578 Test #151: plm-adjust-d .......................... Passed 1.27 sec test 210 Start 210: plm-convert-dose-scale 210: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-dose-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 210: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 210: Test timeout computed to be: 1500 - 74/578 Test #160: plm-adjust-g .......................... Passed 1.15 sec test 213 Start 213: plm-crop-a 213: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 213: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 213: Test timeout computed to be: 1500 -142: RETVAL: 0 -142: STDOUT: Applying piece-wise linear transform... -142: done. -142: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd -142: Finished! -142: -142: STDERR: -142: Not an error -206: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -206: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt -206: EXPECTED_ERRNO is - 75/578 Test #142: plm-adjust-a .......................... Passed 1.49 sec test 216 Start 216: plm-crop-b 216: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 216: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 216: Test timeout computed to be: 1500 -210: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -210: PARMS is convert;--input-dose-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7 -210: EXPECTED_ERRNO is -178: RETVAL: 0 -178: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd -178: -178: STDERR: -178: Not an error - 76/578 Test #178: plm-boundary-c ........................ Passed 0.59 sec + 51/578 Test #148: plm-adjust-c .......................... Passed 0.29 sec +136: RETVAL: 0 +136: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd +136: +136: STDERR: +136: Not an error +154: RETVAL: 0 +154: STDOUT: Applying shift=1000 and scale=2.5 ... done. +154: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd +154: Finished! +154: +154: STDERR: +154: Not an error +190: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +190: PARMS is convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom;--metadata;0018,5100&equal&FFS +190: EXPECTED_ERRNO is +4: RETVAL: 0 +4: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd +4: Finished! +4: +4: STDERR: +4: Not an error + 52/578 Test #136: plm-add-vf-a .......................... Passed 0.30 sec + 53/578 Test #151: plm-adjust-d .......................... Passed 0.29 sec + 54/578 Test #154: plm-adjust-e .......................... Passed 0.28 sec + 55/578 Test #163: plm-adjust-h .......................... Passed 0.28 sec test 219 Start 219: plm-crop-c 219: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=crop;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha;--structure;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 219: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 219: Test timeout computed to be: 1500 -213: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -213: PARMS is crop;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9 -213: EXPECTED_ERRNO is -216: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -216: PARMS is crop;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7 -216: EXPECTED_ERRNO is -166: RETVAL: 0 -166: STDOUT: Applying local intensity matching... -166: Time = 0.002899 seconds -166: Time = 0.003021 seconds -166: Time = 0.019357 seconds -166: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd -166: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd -166: done. -166: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd -166: Finished! -166: -166: STDERR: -166: Not an error -184: RETVAL: 0 -184: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd -184: -184: STDERR: -184: Not an error -148: RETVAL: 0 -148: STDOUT: Applying shift=100 and scale=1 ... done. -148: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd -148: Finished! -148: -148: STDERR: -148: Not an error - 77/578 Test #166: plm-adjust-i .......................... Passed 1.09 sec test 256 Start 256: plm-fill-a 256: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-fill-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fill;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 256: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 256: Test timeout computed to be: 1500 - 78/578 Test #148: plm-adjust-c .......................... Passed 1.54 sec - 79/578 Test #184: plm-boundary-e ........................ Passed 0.53 sec test 259 Start 259: plm-mask-a @@ -7469,222 +6843,160 @@ 262: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--compute-full-region;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 262: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 262: Test timeout computed to be: 1500 -163: RETVAL: 0 -163: STDOUT: Computing statistics for linear match... -163: Time = 0.008147 seconds -163: Adjusting image. shift = 0.158838; scale = 0.000442518 done. -163: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd -163: Finished! -163: -163: STDERR: -163: Not an error - 80/578 Test #163: plm-adjust-h .......................... Passed 1.19 sec test 265 Start 265: plm-gamma-b 265: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 265: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 265: Test timeout computed to be: 1500 -169: RETVAL: 0 -169: STDOUT: Applying local intensity matching... -169: Time = 0.018717 seconds -169: Time = 0.008858 seconds -169: Time = 0.008156 seconds -169: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd -169: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd -169: done. -169: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd -169: Finished! -169: -169: STDERR: -169: Not an error +199: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +199: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd +199: EXPECTED_ERRNO is +202: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +202: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-dicom;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd;--xor-contours +202: EXPECTED_ERRNO is +184: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +184: PARMS is boundary;--boundary-behavior;edge-pad;--boundary-type;interior-face;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-5.mha +184: EXPECTED_ERRNO is +160: RETVAL: 0 +160: STDOUT: Computing statistics for linear match... +160: Adjusting image. shift = 0.289174; scale = 0.000314475 done. +160: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd +160: Finished! +160: +160: STDERR: +160: Not an error +210: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +210: PARMS is convert;--input-dose-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-3.mha;--output-dose-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha;--dose-scale;77.7 +210: EXPECTED_ERRNO is +213: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +213: PARMS is crop;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha;--voxels;5 15 3 18 7 9 +213: EXPECTED_ERRNO is +172: RETVAL: 0 +172: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd +172: +172: STDERR: +172: Not an error 219: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 219: PARMS is crop;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha;--structure;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-2.mha 219: EXPECTED_ERRNO is -259: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -259: PARMS is mask;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000 -259: EXPECTED_ERRNO is -256: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -256: PARMS is fill;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha -256: EXPECTED_ERRNO is - 81/578 Test #169: plm-adjust-j .......................... Passed 1.13 sec + 56/578 Test #4: cyl-2 ................................. Passed 0.35 sec + 57/578 Test #160: plm-adjust-g .......................... Passed 0.30 sec test 272 Start 272: plm-maximum-a 272: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-maximum-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=maximum;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 272: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 272: Test timeout computed to be: 1500 -265: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -265: PARMS is gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha -265: EXPECTED_ERRNO is -145: RETVAL: 0 -145: STDOUT: Applying piece-wise linear transform... -145: done. -145: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd -145: Finished! -145: -145: STDERR: -181: RETVAL: 0 -181: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd -181: -181: STDERR: -181: Not an error -145: Not an error -262: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -262: PARMS is gamma;--compute-full-region;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha -262: EXPECTED_ERRNO is - 82/578 Test #145: plm-adjust-b .......................... Passed 1.68 sec - 83/578 Test #181: plm-boundary-d ........................ Passed 0.74 sec test 275 Start 275: plm-multiply-a 275: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 275: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 275: Test timeout computed to be: 1500 + 58/578 Test #172: plm-boundary-a ........................ Passed 0.26 sec +142: RETVAL: 0 +142: STDOUT: Applying piece-wise linear transform... +142: done. +142: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd +142: Finished! +142: +142: STDERR: +142: Not an error +139: RETVAL: 0 +139: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd +139: +139: STDERR: +139: Not an error +256: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +256: PARMS is fill;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha +256: EXPECTED_ERRNO is +285: RETVAL: 0 +285: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +285: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +285: Launching registration worker thread +285: Inside registration worker thread +285: Doing registration stage +285: [1] xf_in->m_type = 0, xf_out->m_type = 0 +285: Fixed image for this stage: +285: Dim = 19 19 19 +285: Origin = -24.3421 -24.3421 -24.3421 +285: Spacing = 2.63158 2.63158 2.63158 +285: Direction Cosines = +285: 1 0 0 +285: 0 1 0 +285: 0 0 1 +285: Moving image for this stage: +285: Dim = 19 19 19 +285: Origin = -24.3421 -24.3421 -24.3421 +285: Spacing = 2.63158 2.63158 2.63158 +285: Direction Cosines = +285: 1 0 0 +285: 0 1 0 +285: 0 0 1 +285: Initial Parameters = [0, 0, 0] +285: Starting ITK registration +285: StartEvent: [0, 0, 0] +285: MSE [ 0, 0,10.00] 18756.235 [9.999997615028182, -0.004883617032987085, -0.00488361703298731] +285: :: [0, 0, 0] +285: * +285: MSE [ 1, 1, 5.00] 1.116 [5.318441699151528, 1.2366948554205826, 1.2366948554205925] -18755.12 +285: :: [9.999997615028182, -0.004883617032987085, -0.00488361703298731] +285: * +285: MSE [ 2, 2, 2.50] 5544.602 [7.610651940085832, 0.5310844064631247, 0.5310844064631272] 5543.49 +285: MSE [ 3, 3, 2.50] 1453.699 [9.961460585442488, -0.07045474975050137, -0.07045474975050403] -4090.90 +285: MSE [ 4, 4, 1.25] 4.252 [10.13062237366747, 0.8052975809356626, 0.8052975809356772] -1449.45 +285: EndEvent: [10.13062237366747, 0.8052975809356626, 0.8052975809356772] +285: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. +285: ITK registration complete +285: [2] xf_out->m_type = 1, xf_in->m_type = 0 +285: ** Registration worker thread finished. +285: Writing transformation ... +285: Warping... +285: plm_warp_itk: xform_to_itk_vf +285: plm_warp_itk: convert_to_itk +285: plm_warp_itk: warping... +285: Saving image... +285: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha +285: Saving vf... +285: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha +285: Load: 0.102439 +285: Run: 0.057925 +285: Save: 0.0103931 +285: Total: 0.170757 +285: Finished! +285: +285: STDERR: +166: RETVAL: 0 +166: STDOUT: Applying local intensity matching... +166: Time = 0.008238 seconds +166: Time = 0.005197 seconds +166: Time = 0.001124 seconds +166: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-shift.nrrd +166: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i-scale.nrrd +166: done. +166: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd +166: Finished! +166: +166: STDERR: +216: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +216: PARMS is crop;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha;--coordinates;-15 10 3 18 -12 -7 +216: EXPECTED_ERRNO is +157: RETVAL: 0 +157: STDOUT: Performing histogram matching... +157: done. +157: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd +157: Finished! +157: +157: STDERR: + 59/578 Test #142: plm-adjust-a .......................... Passed 0.36 sec + 60/578 Test #139: plm-add-vf-b .......................... Passed 0.30 sec test 278 Start 278: plm-multiply-vf-a 278: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=multiply;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 278: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 278: Test timeout computed to be: 1500 -272: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -272: PARMS is maximum;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -272: EXPECTED_ERRNO is -275: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -275: PARMS is multiply;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -275: EXPECTED_ERRNO is -340: RETVAL: 0 -340: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -340: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha -340: Launching registration worker thread -340: Inside registration worker thread -340: Doing registration stage -340: [1] xf_in->m_type = 0, xf_out->m_type = 0 -340: RESAMPLE 1 1: (1 1 1), (1 1 1) -340: RESAMPLE 1 1: (1 1 1), (1 1 1) -340: volume_calc_grad complete. -340: bspline_xform_initialize -340: rdims = (3,3,3) -340: vox_per_rgn = (15,15,15) -340: cdims = (6 6 6) -340: Algorithm flavor = c -340: Threading = 0 -340: >> Checking JH allocation -340: >> Performing JH allocation -340: BSPLINE PARMS -340: max_its = 10 -340: max_feval = 10 -340: BSPLINE XFORM HEADER -340: vox_per_rgn = 15 15 15 -340: roi_offset = 0 0 0 -340: roi_dim = 38 38 38 -340: img_dc = 1 0 0 0 1 0 0 0 1 -340: BST METRICS -340: MET 110100 MI 1.000000 -340: >> Performing JH initialization -340: Using alpha_0 (1.000000) -340: [ 0, 0] MI -0.3659457 NV 54872 GM -0.007 GN 0.00788 [ 0.208 s ] -340: CMIN 0.01 CAVG 0.01 CMAX 0.01 -340: [ 0, 1] MI -0.3699214 NV 54872 GM -0.056 GN 0.00867 [ 0.123 s ] -340: CMIN -0.21 CAVG 0.01 CMAX 0.30 -340: GR 0.50 NEW_A 1.00 ACCEPT? 1 -340: [ 1, 2] MI -0.3777946 NV 54872 GM -0.049 GN 0.00903 [ 0.181 s ] -340: CMIN -0.23 CAVG 0.02 CMAX 0.69 -340: GR 0.91 NEW_A 3.00 ACCEPT? 1 -340: [ 2, 3] MI -0.4137608 NV 54753 GM -0.063 GN 0.017 [ 0.201 s ] -340: CMIN -0.35 CAVG 0.05 CMAX 2.09 -340: GR 3.98 NEW_A 9.00 ACCEPT? 1 -340: [ 3, 4] MI -0.5521525 NV 53587 GM -0.081 GN 0.017 [ 0.355 s ] -340: CMIN -0.97 CAVG 0.10 CMAX 7.08 -340: GR 8.16 NEW_A 27.00 ACCEPT? 1 -340: [ 4, 5] MI -1.2166027 NV 49761 GM -0.031 GN 0.0276 [ 0.352 s ] -340: CMIN -2.22 CAVG 0.30 CMAX 20.76 -340: GR 38.97 NEW_A 81.00 ACCEPT? 1 -340: [ 5, 6] MI -0.4035923 NV 36457 GM -0.029 GN 0.0114 [ 0.191 s ] -340: CMIN -26.58 CAVG 0.44 CMAX 33.14 -340: GR -29.50 NEW_A 40.50 ACCEPT? 0 -340: [ 5, 7] MI -0.7946788 NV 43303 GM -0.068 GN 0.0215 [ 0.153 s ] -340: CMIN -14.21 CAVG 0.37 CMAX 26.12 -340: GR -15.31 NEW_A 20.25 ACCEPT? 0 -340: [ 5, 8] MI -1.1523657 NV 46825 GM -0.160 GN 0.031 [ 0.157 s ] -340: CMIN -8.02 CAVG 0.33 CMAX 23.44 -340: GR -2.33 NEW_A 10.12 ACCEPT? 0 -340: [ 5, 9] MI -1.3108922 NV 48385 GM -0.176 GN 0.0266 [ 0.173 s ] -340: CMIN -4.93 CAVG 0.31 CMAX 22.10 -340: GR 3.42 NEW_A 30.38 ACCEPT? 1 -340: [ 6, 10] MI -0.7927921 NV 46839 GM 0.149 GN 0.0234 [ 0.128 s ] -340: CMIN -2.23 CAVG 0.62 CMAX 17.80 -340: GR -19.50 NEW_A 15.19 ACCEPT? 0 -340: [2] xf_out->m_type = 9, xf_in->m_type = 0 -340: ** Registration worker thread finished. -340: Writing transformation ... -340: Warping... -340: Running: plm_warp_native -340: Converting input image... -340: Converting xform... -340: bspline_xform_initialize -340: rdims = (3,3,3) -340: vox_per_rgn = (15,15,15) -340: cdims = (6 6 6) -340: Creating output vf... -340: Creating output volume... -340: Running native warper... -340: bspline_warp complete. -340: Back convert to original type... -340: > Convert vf to itk -340: > Conversion complete. -340: plm_warp_native is complete. -340: Saving image... -340: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha -340: Saving vf... -340: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha -340: Load: 0.286889 -340: Run: 2.26323 -340: Save: 0.0622921 -340: Total: 2.61241 -340: Finished! -340: -340: STDERR: -340: Not an error -278: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -278: PARMS is multiply;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha -278: EXPECTED_ERRNO is -108: RETVAL: 0 -108: STDOUT: Reconstructing... -108: Processing image 0 -108: Processing image 1 -108: Processing image 2 -108: Processing image 3 -108: Processing image 4 -108: Processing image 5 -108: Processing image 6 -108: Processing image 7 -108: Processing image 8 -108: Processing image 9 -108: Processing image 10 -108: Processing image 11 -108: Processing image 12 -108: Processing image 13 -108: Processing image 14 -108: Processing image 15 -108: Processing image 16 -108: Processing image 17 -108: Processing image 18 -108: Processing image 19 -108: I/O time (total) = 0.0038836 -108: I/O time (per image) = 0.00019418 -108: Filter time = 0 -108: Filter time (per image) = 0 -108: Backprojection time = 1.10849 -108: Backprojection time (per image) = 0.0554243 -108: Writing output volume(s)... -108: done. -108: -108: -108: STDERR: -108: Not an error - 84/578 Test #340: plm-bsp-mi-c-2 ........................ Passed 3.42 sec - 85/578 Test #108: fdk-cpu-a ............................. Passed 1.98 sec test 282 Start 282: plm-reg-align-center @@ -7697,66 +7009,552 @@ 288: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 288: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 288: Test timeout computed to be: 1500 -282: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -282: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt -282: EXPECTED_ERRNO is -288: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -288: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt -288: EXPECTED_ERRNO is -199: RETVAL: 0 -199: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648251.1717448213.393700RTDOSE -199: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648251.1717448213.393701RTSTRUCT -199: Found DCM_ReferencedFrameOfReferenceSequence! -199: Found DCM_RTReferencedStudySequence! -199: Trying to load rt dose. -199: Load: DoseGridScaling = 0.000000 -199: RTDOSE: dim = 38 38 38 -199: ipp = -25.000000 -25.000000 -25.000000 -199: spc = 1.315790 1.315790 1.315790 -199: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -199: Bits_alloc: 32 -199: Bits_stored: 32 -199: High_bit: 31 -199: Pixel_rep: 0 -199: rc = 1, length = 109744, npix = 54872 -199: Trying to load rt structure set. -199: Adding structure (1), Foreground -199: Structure 1 has color 255\0\0 -199: Setting PIH from RDD -199: PIH is: -199: Origin = -25.0000 -25.0000 -25.0000 -199: Size = 38 38 38 -199: Spacing = 1.3158 1.3158 1.3158 -199: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -199: Rt_study_warp: Convert ss_img to cxt. -199: Rt_study_warp: Apply dicom_dir. -199: Rt_study_warp: Set geometry from PIH. -199: Rt_study_warp: Set rasterization geometry. -199: rast_dim = 512 512 14 -199: rast_offset = -10.3618 -10.3618 -9.21053 -199: rast_spacing = 0.0404759 0.0404759 1.31579 -199: Rt_study_warp: warp and save ss. -199: Warp_and_save_ss: seg->rasterize -199: Rasterizing... -199: Converting... -199: Finished rasterization. -199: Warp_and_save_ss: save_ss_img -199: save_ss_img: save_ss_image -199: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd -199: Finished! -199: -199: STDERR: -199: Not an error - 86/578 Test #199: plm-convert-dicom-donut-a ............. Passed 0.72 sec +285: Not an error +166: Not an error +259: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +259: PARMS is mask;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--mask-value;-1000 +259: EXPECTED_ERRNO is +262: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +262: PARMS is gamma;--compute-full-region;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-14.mha +262: EXPECTED_ERRNO is +58: RETVAL: 0 +58: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha +58: +58: STDERR: +58: Not an error +265: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +265: PARMS is gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-12.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-13.mha +265: EXPECTED_ERRNO is +119: RETVAL: 0 +119: STDOUT: 180.000000 +119: 180.000000 +119: 180.000000 +119: 180.000000 +119: 180.000000 +119: 180.000000 +119: 180.000000 +119: 180.000000 +119: coeff 0 -18.4133 0.0962 0.0000 +119: coeff 1 -7.5271 -0.0286 0.0000 +119: coeff 2 -6.1678 1.3625 -0.0000 +119: coeff 3 -20.1368 -0.9723 0.0000 +119: coeff 4 -19.7774 -0.2570 -0.0000 +119: coeff 5 -7.3050 1.5884 0.0000 +119: coeff 6 -7.4759 -0.3261 -0.0000 +119: coeff 7 -20.6523 -0.1769 -0.0000 +119: Creating output vf +119: Rendering vector field +119: Wendland RBF, updating the vector field +119: Converting volume to float +119: Creating output vol +119: Warping image +119: Direction cosines: vin = 1.000000 0.000000 0.000000 ... +119: vf = 1.000000 0.000000 0.000000 ... +119: spac: vin = 13.157895 13.157895 13.157895 ... +119: vf = 13.157895 13.157895 13.157895 ... +119: proj: vin = 0.076000 -0.000000 0.000000 ... +119: vf = 0.076000 -0.000000 0.000000 ... +119: step: vin = 13.157895 0.000000 0.000000 ... +119: vf = 13.157895 0.000000 0.000000 ... +119: Freeing coeff +119: Done with rbf_wendland_warp +119: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha +119: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha +119: +119: STDERR: +119: Not an error +91: RETVAL: 0 +91: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha +91: +91: STDERR: +91: Not an error +133: RETVAL: 0 +133: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd +133: +133: STDERR: +133: Not an error +178: RETVAL: 0 +178: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd +178: +178: STDERR: +175: RETVAL: 0 +175: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd +175: +175: STDERR: +175: Not an error +272: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +272: PARMS is maximum;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +272: EXPECTED_ERRNO is +275: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +275: PARMS is multiply;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +275: EXPECTED_ERRNO is +59: RETVAL: 0 +59: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha +59: +59: STDERR: + 61/578 Test #285: plm-reg-itk-translation ............... Passed 0.41 sec + 62/578 Test #91: plm-diff-a ............................ Passed 0.39 sec + 63/578 Test #166: plm-adjust-i .......................... Passed 0.35 sec + 64/578 Test #119: landmark-warp-b ....................... Passed 0.32 sec test 293 Start 293: plm-reg-itk-similarity 293: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 293: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 293: Test timeout computed to be: 1500 +test 298 + Start 298: plm-reg-itk-bspline + +298: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +298: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +298: Test timeout computed to be: 1500 +test 301 + Start 301: plm-reg-itk-demons + +301: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +301: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +301: Test timeout computed to be: 1500 +test 311 + Start 311: plm-bsp-mse-c + +311: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +311: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +311: Test timeout computed to be: 1500 + 65/578 Test #58: rectarr-03 ............................ Passed 0.35 sec +178: Not an error +59: Not an error +157: Not an error +288: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +288: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a.txt +288: EXPECTED_ERRNO is +282: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +282: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center.txt +282: EXPECTED_ERRNO is +278: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +278: PARMS is multiply;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha +278: EXPECTED_ERRNO is + 66/578 Test #157: plm-adjust-f .......................... Passed 0.38 sec + 67/578 Test #59: rectarr-04 ............................ Passed 0.35 sec + 68/578 Test #133: plm-add-b ............................. Passed 0.34 sec + 69/578 Test #175: plm-boundary-b ........................ Passed 0.33 sec + 70/578 Test #178: plm-boundary-c ........................ Passed 0.31 sec +test 314 + Start 314: plm-bsp-mse-g + +314: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +314: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +314: Test timeout computed to be: 1500 +test 320 + Start 320: plm-bsp-mse-i + +320: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +320: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +320: Test timeout computed to be: 1500 +test 323 + Start 323: plm-bsp-mse-k + +323: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +323: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +323: Test timeout computed to be: 1500 +test 326 + Start 326: plm-bsp-mse-l + +326: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +326: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +326: Test timeout computed to be: 1500 +test 337 + Start 337: plm-bsp-mi-c + +337: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +337: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +337: Test timeout computed to be: 1500 +test 343 + Start 343: plm-bsp-mi-k + +343: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +343: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +343: Test timeout computed to be: 1500 +293: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +293: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt +293: EXPECTED_ERRNO is +94: RETVAL: 0 +94: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha +94: +94: STDERR: +94: Not an error +311: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +311: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt +311: EXPECTED_ERRNO is +124: RETVAL: 0 +124: STDOUT: 74.000000 +124: 74.000000 +124: 74.000000 +124: 74.000000 +124: 74.000000 +124: 74.000000 +124: 74.000000 +124: 74.000000 +124: coeff 0 -14.4830 0.0226 -0.0000 +124: coeff 1 -6.4591 0.0989 0.0000 +124: coeff 2 -5.6641 0.8767 0.0000 +124: coeff 3 -15.5832 -0.6135 0.0000 +124: coeff 4 -15.3769 -0.1107 0.0000 +124: coeff 5 -6.4169 1.0717 -0.0000 +124: coeff 6 -6.5309 -0.1220 0.0000 +124: coeff 7 -16.0092 -0.1893 -0.0000 +124: Creating output vf +124: Rendering vector field +124: Gauss RBF, updating the vector field +124: Converting volume to float +124: Creating output vol +124: Warping image +124: Direction cosines: vin = 1.000000 0.000000 0.000000 ... +124: vf = 1.000000 0.000000 0.000000 ... +124: spac: vin = 13.157895 13.157895 13.157895 ... +124: vf = 13.157895 13.157895 13.157895 ... +124: proj: vin = 0.076000 -0.000000 0.000000 ... +124: vf = 0.076000 -0.000000 0.000000 ... +124: step: vin = 13.157895 0.000000 0.000000 ... +124: vf = 13.157895 0.000000 0.000000 ... +124: Freeing coeff +124: Done with rbf_gauss_warp +124: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha +124: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha +124: +124: STDERR: +124: Not an error +114: RETVAL: 0 +114: STDOUT: Hello world +114: Gonna convert pointsets +114: Pointset: +114: rect-2-0 -26.271700 -52.162899 46.052799 +114: rect-2-1 65.870201 -52.543598 46.053001 +114: rect-2-2 65.870201 52.543900 46.053001 +114: rect-2-3 -25.510201 53.686199 46.053001 +114: rect-2-4 -25.891001 -52.162899 -46.052502 +114: rect-2-5 66.631699 -53.305099 -46.053001 +114: rect-2-6 65.870201 53.305401 -46.053001 +114: rect-2-7 -25.129499 53.686199 -46.053001 +114: Conversion complete. +114: -26.2717 -52.1629 46.0528 +114: 65.8702 -52.5436 46.053 +114: 65.8702 52.5439 46.053 +114: -25.5102 53.6862 46.053 +114: -25.891 -52.1629 -46.0525 +114: 66.6317 -53.3051 -46.053 +114: 65.8702 53.3054 -46.053 +114: -25.1295 53.6862 -46.053 +114: Setting landmarks to TPS +114: Computing matrix +114: Setting xform +114: Converting to VF +114: Warping... +114: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha +114: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha +114: +114: STDERR: +114: Not an error +301: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +301: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt +301: EXPECTED_ERRNO is +317: RETVAL: 0 +317: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +317: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +317: Launching registration worker thread +317: Inside registration worker thread +317: Doing registration stage +317: [1] xf_in->m_type = 0, xf_out->m_type = 0 +317: RESAMPLE 1 1: (2 2 2), (2 2 2) +317: RESAMPLE 1 1: (2 2 2), (2 2 2) +317: volume_calc_grad complete. +317: bspline_xform_initialize +317: rdims = (2,2,2) +317: vox_per_rgn = (11,11,11) +317: cdims = (5 5 5) +317: Algorithm flavor = h +317: Threading = 0 +317: >> Checking JH allocation +317: BSPLINE PARMS +317: max_its = 5 +317: max_feval = 5 +317: BSPLINE XFORM HEADER +317: vox_per_rgn = 11 11 11 +317: roi_offset = 0 0 0 +317: roi_dim = 19 19 19 +317: img_dc = 1 0 0 0 1 0 0 0 1 +317: BST METRICS +317: MET 110100 MSE 1.000000 +317: Setting nmax, mmax = 375 21 +317: >>> START +317: This problem is unconstrained. +317: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.007 s ] +317: CMIN 0.00 CAVG 0.00 CMAX 0.00 +317: LSD 0.00 +317: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.004 s ] +317: CMIN -0.07 CAVG 0.01 CMAX 0.68 +317: LSD 1.00 +317: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.006 s ] +317: CMIN -0.35 CAVG 0.05 CMAX 3.40 +317: LSD 5.00 +317: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.004 s ] +317: CMIN -1.48 CAVG 0.20 CMAX 14.26 +317: LSD 21.00 +317: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.005 s ] +317: CMIN -1.74 CAVG 0.44 CMAX 32.50 +317: LSD 27.95 +317: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.004 s ] +317: CMIN -1.73 CAVG 0.34 CMAX 23.99 +317: LSD 13.11 +317: [2] xf_out->m_type = 9, xf_in->m_type = 0 +317: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +317: bspline_xform_initialize +317: rdims = (2,2,2) +317: vox_per_rgn = (22,22,22) +317: cdims = (5 5 5) +317: ** Registration worker thread finished. +317: Writing transformation ... +317: Warping... +317: Running: plm_warp_native +317: Converting input image... +317: Converting xform... +317: bspline_xform_initialize +317: rdims = (2,2,2) +317: vox_per_rgn = (22,22,22) +317: cdims = (5 5 5) +317: Creating output vf... +317: Creating output volume... +317: Running native warper... +317: bspline_warp complete. +317: Back convert to original type... +317: > Convert vf to itk +317: > Conversion complete. +317: plm_warp_native is complete. +317: Saving image... +317: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha +317: Saving vf... +317: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-vf.mha +317: Load: 0.104431 +317: Run: 0.040303 +317: Save: 0.0987411 +317: Total: 0.243475 +317: Finished! +317: +317: STDERR: +317: Not an error +298: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +298: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt +298: EXPECTED_ERRNO is +187: RETVAL: 0 +187: STDOUT: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205339.1751858934.315446RTSTRUCT +187: Found DCM_ReferencedFrameOfReferenceSequence! +187: Found DCM_RTReferencedStudySequence! +187: Trying to load rt structure set. +187: Adding structure (1), Foreground +187: Structure 1 has color 255\0\0 +187: Setting PIH from rasterization heuristicsPIH is: +187: Origin = -55.2632 -55.2632 -46.0526 +187: Size = 512 512 7 +187: Spacing = 0.2159 0.2159 13.1579 +187: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +187: Rt_study_warp: Convert ss_img to cxt. +187: Rt_study_warp: Apply dicom_dir. +187: Rt_study_warp: Set geometry from PIH. +187: Rt_study_warp: Set rasterization geometry. +187: rast_dim = 512 512 7 +187: rast_offset = -55.2632 -55.2632 -46.0526 +187: rast_spacing = 0.215872 0.215872 13.1579 +187: Rt_study_warp: warp and save ss. +187: Warp_and_save_ss: seg->rasterize +187: Rasterizing... +187: Converting... +187: Finished rasterization. +187: Warp_and_save_ss: save_ss_img +187: save_ss_img: save_ss_image +187: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha +187: save_ss_img: save_ss_list +187: Done. +187: save_ss_img: save_prefix +187: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-prefix/Foreground.mha +187: save_ss_img: save_cxt +187: Finished! +187: +187: STDERR: +187: Not an error +314: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +314: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt +314: EXPECTED_ERRNO is +320: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +320: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt +320: EXPECTED_ERRNO is + 71/578 Test #317: plm-bsp-mse-h ......................... Passed 0.48 sec + 72/578 Test #94: plm-diff-b ............................ Passed 0.40 sec + 73/578 Test #114: landmark-warp-a ....................... Passed 0.40 sec + 74/578 Test #124: landmark-warp-c ....................... Passed 0.39 sec +test 346 + Start 346: plm-bsp-gm-k + +346: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +346: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +346: Test timeout computed to be: 1500 +test 351 + Start 351: plm-bsp-openmp + +351: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-openmp.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +351: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +351: Test timeout computed to be: 1500 +test 358 + Start 358: plm-bsp-ushort + +358: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-ushort.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +358: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +358: Test timeout computed to be: 1500 +test 361 + Start 361: plm-bsp-double + +361: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +361: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +361: Test timeout computed to be: 1500 + 75/578 Test #187: plm-convert-dicom-a ................... Passed 0.44 sec +169: RETVAL: 0 +169: STDOUT: Applying local intensity matching... +169: Time = 0.003092 seconds +169: Time = 0.006341 seconds +169: Time = 0.004082 seconds +169: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-shift.nrrd +169: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j-scale.nrrd +169: done. +169: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd +169: Finished! +169: +169: STDERR: +169: Not an error + 76/578 Test #169: plm-adjust-j .......................... Passed 0.53 sec +323: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +323: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt +323: EXPECTED_ERRNO is +326: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +326: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt +326: EXPECTED_ERRNO is +130: RETVAL: 0 +130: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd +130: +130: STDERR: +130: Not an error +343: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +343: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt +343: EXPECTED_ERRNO is + 77/578 Test #130: plm-add-a ............................. Passed 0.50 sec +test 206 + Start 206: plm-convert-cxt + +206: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +206: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +206: Test timeout computed to be: 1500 +test 365 + Start 365: plm-bsp-char-output + +365: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-char-output.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +365: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +365: Test timeout computed to be: 1500 +test 369 + Start 369: plm-bsp-regularize-none + +369: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +369: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +369: Test timeout computed to be: 1500 +337: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +337: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt +337: EXPECTED_ERRNO is +351: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +351: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-openmp.txt +351: EXPECTED_ERRNO is +346: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +346: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt +346: EXPECTED_ERRNO is +181: RETVAL: 0 +181: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd +181: +181: STDERR: +181: Not an error +361: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +361: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt +361: EXPECTED_ERRNO is +358: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +358: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-ushort.txt +358: EXPECTED_ERRNO is +184: RETVAL: 0 +184: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd +184: +184: STDERR: +184: Not an error + 78/578 Test #184: plm-boundary-e ........................ Passed 0.31 sec +test 372 + Start 372: plm-bsp-regularize-analytic + +372: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +372: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +372: Test timeout computed to be: 1500 + 79/578 Test #181: plm-boundary-d ........................ Passed 0.33 sec +219: RETVAL: 0 +219: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha +219: +219: STDERR: +test 375 + Start 375: plm-bsp-regularize-numeric + +375: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +375: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +375: Test timeout computed to be: 1500 +219: Not an error +210: RETVAL: 0 +210: STDOUT: Setting PIH from DOSE +210: PIH is: +210: Origin = -243.4211 -243.4211 -243.4211 +210: Size = 38 38 38 +210: Spacing = 13.1579 13.1579 13.1579 +210: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +210: Rt_study_warp: Saving dose image (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha) +210: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha +210: Rt_study_warp: warp and save ss. +210: Finished! +210: +210: STDERR: + 80/578 Test #219: plm-crop-c ............................ Passed 0.29 sec +test 379 + Start 379: plm-bsp-landmark-b + +379: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +379: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +379: Test timeout computed to be: 1500 +210: Not an error +365: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +365: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-char-output.txt +365: EXPECTED_ERRNO is +369: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +369: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt +369: EXPECTED_ERRNO is +372: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +372: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt +372: EXPECTED_ERRNO is +206: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +206: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a.cxt;--output-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha;--output-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.txt +206: EXPECTED_ERRNO is + 81/578 Test #210: plm-convert-dose-scale ................ Passed 0.32 sec +test 382 + Start 382: plm-bsp-landmark-c + +382: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +382: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +382: Test timeout computed to be: 1500 +375: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +375: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt +375: EXPECTED_ERRNO is +379: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +379: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt +379: EXPECTED_ERRNO is 190: RETVAL: 0 -190: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648233.1717448213.382359RTDOSE -190: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648233.1717448213.382360RTSTRUCT +190: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205339.1751858934.315445RTDOSE +190: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205339.1751858934.315446RTSTRUCT 190: Found DCM_ReferencedFrameOfReferenceSequence! 190: Found DCM_RTReferencedStudySequence! 190: Trying to load rt dose. @@ -7795,35 +7593,35 @@ 190: 190: STDERR: 190: Not an error - 87/578 Test #190: plm-convert-dicom-b ................... Passed 0.86 sec -test 298 - Start 298: plm-reg-itk-bspline - -298: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -298: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -298: Test timeout computed to be: 1500 -293: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -293: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity.txt -293: EXPECTED_ERRNO is -298: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -298: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline.txt -298: EXPECTED_ERRNO is -256: RETVAL: 0 -256: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha -256: Finished! -256: -256: STDERR: -256: Not an error - 88/578 Test #256: plm-fill-a ............................ Passed 0.50 sec -test 301 - Start 301: plm-reg-itk-demons +265: RETVAL: 0 +265: STDOUT: Gamma dose max is 10.000000 +265: Time = 0.003920 seconds +265: Gamma calculation is under progress... +265: analysis threshold = 1.00 Gy +265: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha +265: Pass rate = 0.000000 % +265: +265: STDERR: +265: Not an error +259: RETVAL: 0 +259: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha +259: Finished! +259: +259: STDERR: +259: Not an error + 82/578 Test #259: plm-mask-a ............................ Passed 0.33 sec +test 385 + Start 385: plm-bsp-landmark-d -301: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -301: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -301: Test timeout computed to be: 1500 +385: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +385: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +385: Test timeout computed to be: 1500 +382: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +382: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt +382: EXPECTED_ERRNO is 202: RETVAL: 0 -202: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648251.1717448213.393700RTDOSE -202: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648251.1717448213.393701RTSTRUCT +202: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205354.1751858934.312940RTDOSE +202: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205354.1751858934.312941RTSTRUCT 202: Found DCM_ReferencedFrameOfReferenceSequence! 202: Found DCM_RTReferencedStudySequence! 202: Trying to load rt dose. @@ -7865,320 +7663,25 @@ 202: 202: STDERR: 202: Not an error -210: RETVAL: 0 -210: STDOUT: Setting PIH from DOSE -210: PIH is: -210: Origin = -243.4211 -243.4211 -243.4211 -210: Size = 38 38 38 -210: Spacing = 13.1579 13.1579 13.1579 -210: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -210: Rt_study_warp: Saving dose image (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha) -210: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha -210: Rt_study_warp: warp and save ss. -210: Finished! -210: -210: STDERR: -210: Not an error - 89/578 Test #202: plm-convert-dicom-donut-b ............. Passed 0.81 sec -test 311 - Start 311: plm-bsp-mse-c - -311: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -311: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -311: Test timeout computed to be: 1500 -259: RETVAL: 0 -259: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha -259: Finished! -259: -259: STDERR: -259: Not an error - 90/578 Test #210: plm-convert-dose-scale ................ Passed 0.72 sec -test 314 - Start 314: plm-bsp-mse-g - -314: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -314: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -314: Test timeout computed to be: 1500 - 91/578 Test #259: plm-mask-a ............................ Passed 0.54 sec -test 320 - Start 320: plm-bsp-mse-i - -320: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -320: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -320: Test timeout computed to be: 1500 -219: RETVAL: 0 -219: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c.mha -219: -219: STDERR: -206: RETVAL: 0 -206: STDOUT: CT_SERIES_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.1649322.1717448214.513235| -206: CT_STUDY_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.1649322.1717448214.513251| -206: CT_FRAME_OF_REFERENCE_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.1649322.1717448214.513252| -206: PATIENT_NAME|ANONYMOUS| -206: PATIENT_ID|PL357628677799702| -206: PATIENT_SEX|O| -206: STUDY_ID|10001| -206: OFFSET|-55.2632 -55.2632 -46.0526| -206: DIMENSION|512 512 7| -206: SPACING|0.215872 0.215872 13.1579| -206: ROI_NAMES|| -206: Starting structure parsing -206: Starting contour parsing -206: Setting PIH from structure set spacing -206: PIH is: -206: Origin = -55.2632 -55.2632 -46.0526 -206: Size = 512 512 7 -206: Spacing = 0.2159 0.2159 13.1579 -206: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -206: Rt_study_warp: Convert ss_img to cxt. -206: Rt_study_warp: Apply dicom_dir. -206: Rt_study_warp: Set geometry from PIH. -206: Rt_study_warp: Set rasterization geometry. -206: rast_dim = 512 512 7 -206: rast_offset = -55.2632 -55.2632 -46.0526 -206: rast_spacing = 0.215872 0.215872 13.1579 -206: Rt_study_warp: warp and save ss. -206: Warp_and_save_ss: seg->rasterize -206: Rasterizing... -206: Converting... -206: Finished rasterization. -206: Warp_and_save_ss: save_ss_img -206: save_ss_img: save_ss_image -206: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha -206: save_ss_img: save_ss_list -206: Done. -206: Finished! -206: -206: STDERR: -206: Not an error -219: Not an error - 92/578 Test #206: plm-convert-cxt ....................... Passed 0.83 sec -test 323 - Start 323: plm-bsp-mse-k - -323: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -323: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -323: Test timeout computed to be: 1500 -301: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -301: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.txt -301: EXPECTED_ERRNO is - 93/578 Test #219: plm-crop-c ............................ Passed 0.63 sec -test 326 - Start 326: plm-bsp-mse-l - -326: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -326: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -326: Test timeout computed to be: 1500 -320: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -320: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i.txt -320: EXPECTED_ERRNO is -311: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -311: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c.txt -311: EXPECTED_ERRNO is -314: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -314: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g.txt -314: EXPECTED_ERRNO is -326: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -326: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l.txt -326: EXPECTED_ERRNO is 216: RETVAL: 0 216: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b.mha 216: 216: STDERR: 216: Not an error - 94/578 Test #216: plm-crop-b ............................ Passed 0.80 sec -test 337 - Start 337: plm-bsp-mi-c - -337: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -337: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -337: Test timeout computed to be: 1500 -323: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -323: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k.txt -323: EXPECTED_ERRNO is +272: RETVAL: 0 +272: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd +272: +272: STDERR: 213: RETVAL: 0 213: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a.mha 213: 213: STDERR: 213: Not an error -265: RETVAL: 0 -265: STDOUT: Gamma dose max is 10.000000 -265: Time = 0.010040 seconds -265: Gamma calculation is under progress... -265: analysis threshold = 1.00 Gy -265: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha -265: Pass rate = 0.000000 % -265: -265: STDERR: -265: Not an error - 95/578 Test #213: plm-crop-a ............................ Passed 0.87 sec -test 343 - Start 343: plm-bsp-mi-k - -343: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -343: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -343: Test timeout computed to be: 1500 - 96/578 Test #265: plm-gamma-b ........................... Passed 0.68 sec -test 346 - Start 346: plm-bsp-gm-k - -346: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -346: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -346: Test timeout computed to be: 1500 -337: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -337: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c.txt -337: EXPECTED_ERRNO is -343: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -343: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k.txt -343: EXPECTED_ERRNO is -346: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -346: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k.txt -346: EXPECTED_ERRNO is -278: RETVAL: 0 -278: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd -278: -278: STDERR: -278: Not an error - 97/578 Test #278: plm-multiply-vf-a ..................... Passed 0.69 sec -test 351 - Start 351: plm-bsp-openmp - -351: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-openmp.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -351: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -351: Test timeout computed to be: 1500 -351: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -351: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-openmp.txt -351: EXPECTED_ERRNO is -275: RETVAL: 0 -275: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd -275: -275: STDERR: -275: Not an error - 98/578 Test #275: plm-multiply-a ........................ Passed 0.86 sec -test 358 - Start 358: plm-bsp-ushort - -358: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-ushort.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -358: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -358: Test timeout computed to be: 1500 -358: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -358: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-ushort.txt -358: EXPECTED_ERRNO is -262: RETVAL: 0 -262: STDOUT: Gamma dose max is 10.000000 -262: Time = 0.011732 seconds -262: Gamma calculation is under progress... -262: analysis threshold = 1.00 Gy -262: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha -262: Pass rate = 100.000000 % -262: -262: STDERR: -262: Not an error - 99/578 Test #262: plm-gamma-a ........................... Passed 1.03 sec -test 361 - Start 361: plm-bsp-double - -361: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -361: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -361: Test timeout computed to be: 1500 -361: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -361: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double.txt -361: EXPECTED_ERRNO is -272: RETVAL: 0 -272: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd -272: -272: STDERR: -272: Not an error -100/578 Test #272: plm-maximum-a ......................... Passed 1.17 sec -test 365 - Start 365: plm-bsp-char-output - -365: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-char-output.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -365: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -365: Test timeout computed to be: 1500 -311: RETVAL: 0 -311: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -311: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -311: Launching registration worker thread -311: Inside registration worker thread -311: Doing registration stage -311: [1] xf_in->m_type = 0, xf_out->m_type = 0 -311: RESAMPLE 1 1: (2 2 2), (2 2 2) -311: RESAMPLE 1 1: (2 2 2), (2 2 2) -311: volume_calc_grad complete. -311: bspline_xform_initialize -311: rdims = (2,2,2) -311: vox_per_rgn = (11,11,11) -311: cdims = (5 5 5) -311: Algorithm flavor = c -311: Threading = 0 -311: >> Checking JH allocation -311: BSPLINE PARMS -311: max_its = 5 -311: max_feval = 5 -311: BSPLINE XFORM HEADER -311: vox_per_rgn = 11 11 11 -311: roi_offset = 0 0 0 -311: roi_dim = 19 19 19 -311: img_dc = 1 0 0 0 1 0 0 0 1 -311: BST METRICS -311: MET 110100 MSE 1.000000 -311: Setting nmax, mmax = 375 21 -311: >>> START -311: This problem is unconstrained. -311: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.021 s ] -311: CMIN 0.00 CAVG 0.00 CMAX 0.00 -311: LSD 0.00 -311: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.012 s ] -311: CMIN -0.07 CAVG 0.01 CMAX 0.68 -311: LSD 1.00 -311: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.005 s ] -311: CMIN -0.35 CAVG 0.05 CMAX 3.40 -311: LSD 5.00 -311: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.017 s ] -311: CMIN -1.48 CAVG 0.20 CMAX 14.26 -311: LSD 21.00 -311: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.013 s ] -311: CMIN -1.74 CAVG 0.44 CMAX 32.50 -311: LSD 27.95 -311: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.016 s ] -311: CMIN -1.73 CAVG 0.34 CMAX 23.99 -311: LSD 13.11 -311: [2] xf_out->m_type = 9, xf_in->m_type = 0 -311: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -311: bspline_xform_initialize -311: rdims = (2,2,2) -311: vox_per_rgn = (22,22,22) -311: cdims = (5 5 5) -311: ** Registration worker thread finished. -311: Writing transformation ... -311: Warping... -311: Running: plm_warp_native -311: Converting input image... -311: Converting xform... -311: bspline_xform_initialize -311: rdims = (2,2,2) -311: vox_per_rgn = (22,22,22) -311: cdims = (5 5 5) -311: Creating output vf... -311: Creating output volume... -311: Running native warper... -311: bspline_warp complete. -311: Back convert to original type... -311: > Convert vf to itk -311: > Conversion complete. -311: plm_warp_native is complete. -311: Saving image... -311: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha -311: Saving vf... -311: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-vf.mha -311: Load: 0.075906 -311: Run: 0.144452 -311: Save: 0.117792 -311: Total: 0.33815 -311: Finished! -311: -311: STDERR: +256: RETVAL: 0 +256: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha +256: Finished! +256: +256: STDERR: 282: RETVAL: 0 282: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 282: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-6.mha @@ -8195,239 +7698,489 @@ 282: plm_warp_itk: warping... 282: Saving image... 282: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha -282: Load: 0.160237 -282: Run: 0.0113299 -282: Save: 0.0868859 -282: Total: 0.258453 +282: Load: 0.0502989 +282: Run: 0.000782967 +282: Save: 0.013171 +282: Total: 0.0642529 282: Finished! 282: 282: STDERR: -311: Not an error 282: Not an error -101/578 Test #311: plm-bsp-mse-c ......................... Passed 0.77 sec -test 369 - Start 369: plm-bsp-regularize-none + 83/578 Test #190: plm-convert-dicom-b ................... Passed 0.43 sec + 84/578 Test #213: plm-crop-a ............................ Passed 0.41 sec + 85/578 Test #265: plm-gamma-b ........................... Passed 0.38 sec +test 388 + Start 388: plm-bsp-landmark-e -369: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -369: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -369: Test timeout computed to be: 1500 -102/578 Test #282: plm-reg-align-center .................. Passed 1.06 sec -test 372 - Start 372: plm-bsp-regularize-analytic +388: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +388: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +388: Test timeout computed to be: 1500 +test 391 + Start 391: plm-bsp-dcos-a -372: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -372: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -372: Test timeout computed to be: 1500 -365: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -365: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-char-output.txt -365: EXPECTED_ERRNO is -314: RETVAL: 0 -314: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -314: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -314: Launching registration worker thread -314: Inside registration worker thread -314: Doing registration stage -314: [1] xf_in->m_type = 0, xf_out->m_type = 0 -314: RESAMPLE 1 1: (2 2 2), (2 2 2) -314: RESAMPLE 1 1: (2 2 2), (2 2 2) -314: volume_calc_grad complete. -314: bspline_xform_initialize -314: rdims = (2,2,2) -314: vox_per_rgn = (11,11,11) -314: cdims = (5 5 5) -314: Algorithm flavor = g -314: Threading = 0 -314: >> Checking JH allocation -314: BSPLINE PARMS -314: max_its = 5 -314: max_feval = 5 -314: BSPLINE XFORM HEADER -314: vox_per_rgn = 11 11 11 -314: roi_offset = 0 0 0 -314: roi_dim = 19 19 19 -314: img_dc = 1 0 0 0 1 0 0 0 1 -314: BST METRICS -314: MET 110100 MSE 1.000000 -314: Setting nmax, mmax = 375 21 -314: >>> START -314: This problem is unconstrained. -314: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.049 s ] -314: CMIN 0.00 CAVG 0.00 CMAX 0.00 -314: LSD 0.00 -314: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.029 s ] -314: CMIN -0.07 CAVG 0.01 CMAX 0.68 -314: LSD 1.00 -314: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.014 s ] -314: CMIN -0.35 CAVG 0.05 CMAX 3.40 -314: LSD 5.00 -314: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.024 s ] -314: CMIN -1.48 CAVG 0.20 CMAX 14.26 -314: LSD 21.00 -314: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.032 s ] -314: CMIN -1.74 CAVG 0.44 CMAX 32.50 -314: LSD 27.95 -314: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.036 s ] -314: CMIN -1.73 CAVG 0.34 CMAX 23.99 -314: LSD 13.11 -314: [2] xf_out->m_type = 9, xf_in->m_type = 0 -314: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -314: bspline_xform_initialize -314: rdims = (2,2,2) -314: vox_per_rgn = (22,22,22) -314: cdims = (5 5 5) -314: ** Registration worker thread finished. -314: Writing transformation ... -314: Warping... -314: Running: plm_warp_native -314: Converting input image... -314: Converting xform... -314: bspline_xform_initialize -314: rdims = (2,2,2) -314: vox_per_rgn = (22,22,22) -314: cdims = (5 5 5) -314: Creating output vf... -314: Creating output volume... -314: Running native warper... -314: bspline_warp complete. -314: Back convert to original type... -314: > Convert vf to itk -314: > Conversion complete. -314: plm_warp_native is complete. -314: Saving image... -314: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha -314: Saving vf... -314: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-vf.mha -314: Load: 0.0741291 -314: Run: 0.216683 -314: Save: 0.0990701 -314: Total: 0.389882 -314: Finished! -314: -314: STDERR: -314: Not an error -103/578 Test #314: plm-bsp-mse-g ......................... Passed 0.78 sec -test 375 - Start 375: plm-bsp-regularize-numeric +391: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +391: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +391: Test timeout computed to be: 1500 +test 394 + Start 394: plm-bsp-dcos-b -375: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -375: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -375: Test timeout computed to be: 1500 -293: RETVAL: 0 -293: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha -293: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -293: Launching registration worker thread -293: Inside registration worker thread -293: Doing registration stage -293: [1] xf_in->m_type = 0, xf_out->m_type = 0 -293: Fixed image for this stage: -293: Dim = 19 19 19 -293: Origin = -236.842 -236.842 -236.842 -293: Spacing = 26.316 26.316 26.316 -293: Direction Cosines = -293: 1 0 0 -293: 0 1 0 -293: 0 0 1 -293: Moving image for this stage: -293: Dim = 19 19 19 -293: Origin = -236.842 -236.842 -236.842 -293: Spacing = 26.3158 26.3158 26.3158 -293: Direction Cosines = -293: 1 0 0 -293: 0 1 0 -293: 0 0 1 -293: Initial Parameters = [0, 0, 0, 0, 0, 0, 1] -293: Starting ITK registration -293: StartEvent: [] -293: MSE [ 1, 0,-1.00] 50982.091 [0, 0, 0, 0, 0, 0, 1] * -293: MSE [ 2, 1,-1.00] 43798.343 [0, 0, 0, -0.4593838948324258, 0.47067772433152183, -1.9737006269275084, 0.8764184123566656] -7183.75 * -293: MSE [ 3, 2,-1.00] 39030.004 [0, 0, 0, -0.9555136001504676, 0.27777212751612945, -2.9263769176831524, 0.7999915714784266] -4768.34 * -293: MSE [ 4, 3,-1.00] 39030.004 [0, 0, 0, -0.9555136001504676, 0.27777212751612945, -2.9263769176831524, 0.7999915714784266] 0.00 -293: MSE [ 5, 4,-1.00] 36227.691 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] -2802.31 * -293: MSE [ 6, 5,-1.00] 36227.691 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] 0.00 (tol) -293: EndEvent: [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] -293: OnePlusOneEvolutionaryOptimizer: Maximum number of iterations (1) exceeded. -293: ITK registration complete -293: [2] xf_out->m_type = 4, xf_in->m_type = 0 -293: Warping... -293: plm_warp_itk: xform_to_itk_vf -293: plm_warp_itk: convert_to_itk -293: plm_warp_itk: warping... -293: Saving image... -293: Trying to write image to plm-reg-itk-similarity-intermediate-img.mha -293: Doing registration stage -293: [1] xf_in->m_type = 4, xf_out->m_type = 0 -293: Fixed image for this stage: -293: Dim = 38 38 38 -293: Origin = -243.421 -243.421 -243.421 -293: Spacing = 13.158 13.158 13.158 -293: Direction Cosines = -293: 1 0 0 -293: 0 1 0 -293: 0 0 1 -293: Moving image for this stage: -293: Dim = 38 38 38 -293: Origin = -243.421 -243.421 -243.421 -293: Spacing = 13.1579 13.1579 13.1579 -293: Direction Cosines = -293: 1 0 0 -293: 0 1 0 -293: 0 0 1 -293: Initial Parameters = [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] -293: Starting ITK registration -293: StartEvent: [] -293: MSE [ 1, 0,-1.00] 53402.170 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] * -293: MSE [ 2, 1,-1.00] 40041.651 [0, 0, 0, -1.9937447986384402, -0.27976460247132845, -4.526111859506667, 0.6346268196936601] -13360.52 * -293: MSE [ 3, 2,-1.00] 32234.274 [0, 0, 0, -2.4898745039564822, -0.4726701992867208, -5.478788150262311, 0.558199978815421] -7807.38 * -293: MSE [ 4, 3,-1.00] 32234.274 [0, 0, 0, -2.4898745039564822, -0.4726701992867208, -5.478788150262311, 0.558199978815421] 0.00 -293: MSE [ 5, 4,-1.00] 31471.432 [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] -762.84 * -293: MSE [ 6, 5,-1.00] 31471.432 [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] 0.00 (tol) -293: EndEvent: [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] -293: OnePlusOneEvolutionaryOptimizer: Maximum number of iterations (1) exceeded. -293: ITK registration complete -293: [2] xf_out->m_type = 4, xf_in->m_type = 4 -293: Warping... -293: plm_warp_itk: xform_to_itk_vf -293: plm_warp_itk: convert_to_itk -293: plm_warp_itk: warping... -293: Saving image... -293: Trying to write image to plm-reg-itk-similarity-img.mha -293: ** Registration worker thread finished. -293: Writing transformation ... -293: Warping... -293: plm_warp_itk: xform_to_itk_vf -293: plm_warp_itk: convert_to_itk -293: plm_warp_itk: warping... -293: Saving image... -293: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-img.mha -293: Saving vf... -293: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-vf.mha -293: Load: 0.062834 -293: Run: 0.361034 -293: Save: 0.0614932 -293: Total: 0.485361 -293: Finished! -293: -293: STDERR: -293: Not an error -372: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -372: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic.txt -372: EXPECTED_ERRNO is -104/578 Test #293: plm-reg-itk-similarity ................ Passed 0.95 sec -test 379 - Start 379: plm-bsp-landmark-b +394: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +394: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +394: Test timeout computed to be: 1500 + 86/578 Test #202: plm-convert-dicom-donut-b ............. Passed 0.43 sec + 87/578 Test #216: plm-crop-b ............................ Passed 0.42 sec +272: Not an error +256: Not an error + 88/578 Test #282: plm-reg-align-center .................. Passed 0.34 sec +test 397 + Start 397: plm-bsp-dcos-c -379: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -379: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -379: Test timeout computed to be: 1500 -379: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -379: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b.txt -379: EXPECTED_ERRNO is -375: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -375: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric.txt -375: EXPECTED_ERRNO is -369: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -369: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none.txt -369: EXPECTED_ERRNO is +397: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +397: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +397: Test timeout computed to be: 1500 +test 400 + Start 400: plm-bsp-dcos-d + +400: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +400: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +400: Test timeout computed to be: 1500 +test 403 + Start 403: plm-bsp-dcos-e + +403: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +403: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +403: Test timeout computed to be: 1500 +385: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +385: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt +385: EXPECTED_ERRNO is +388: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +388: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt +388: EXPECTED_ERRNO is +391: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +391: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt +391: EXPECTED_ERRNO is + 89/578 Test #256: plm-fill-a ............................ Passed 0.42 sec + 90/578 Test #272: plm-maximum-a ......................... Passed 0.40 sec +test 406 + Start 406: plm-bsp-dcos-f + +406: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +406: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +406: Test timeout computed to be: 1500 +test 409 + Start 409: plm-reg-multi-a + +409: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +409: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +409: Test timeout computed to be: 1500 +394: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +394: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt +394: EXPECTED_ERRNO is +278: RETVAL: 0 +278: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd +278: +278: STDERR: +278: Not an error +403: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +403: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e.txt +403: EXPECTED_ERRNO is +400: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +400: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt +400: EXPECTED_ERRNO is +199: RETVAL: 0 +199: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205354.1751858934.312940RTDOSE +199: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205354.1751858934.312941RTSTRUCT +199: Found DCM_ReferencedFrameOfReferenceSequence! +199: Found DCM_RTReferencedStudySequence! +199: Trying to load rt dose. +199: Load: DoseGridScaling = 0.000000 +199: RTDOSE: dim = 38 38 38 +199: ipp = -25.000000 -25.000000 -25.000000 +199: spc = 1.315790 1.315790 1.315790 +199: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +199: Bits_alloc: 32 +199: Bits_stored: 32 +199: High_bit: 31 +199: Pixel_rep: 0 +199: rc = 1, length = 109744, npix = 54872 +199: Trying to load rt structure set. +199: Adding structure (1), Foreground +199: Structure 1 has color 255\0\0 +199: Setting PIH from RDD +199: PIH is: +199: Origin = -25.0000 -25.0000 -25.0000 +199: Size = 38 38 38 +199: Spacing = 1.3158 1.3158 1.3158 +199: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +199: Rt_study_warp: Convert ss_img to cxt. +199: Rt_study_warp: Apply dicom_dir. +199: Rt_study_warp: Set geometry from PIH. +199: Rt_study_warp: Set rasterization geometry. +199: rast_dim = 512 512 14 +199: rast_offset = -10.3618 -10.3618 -9.21053 +199: rast_spacing = 0.0404759 0.0404759 1.31579 +199: Rt_study_warp: warp and save ss. +199: Warp_and_save_ss: seg->rasterize +199: Rasterizing... +199: Converting... +199: Finished rasterization. +199: Warp_and_save_ss: save_ss_img +199: save_ss_img: save_ss_image +199: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd +199: Finished! +199: +199: STDERR: +199: Not an error +397: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +397: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt +397: EXPECTED_ERRNO is + 91/578 Test #199: plm-convert-dicom-donut-a ............. Passed 0.48 sec + 92/578 Test #278: plm-multiply-vf-a ..................... Passed 0.39 sec +test 412 + Start 412: plm-reg-multi-b + +412: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +412: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +412: Test timeout computed to be: 1500 +test 415 + Start 415: plm-reg-dv-itk-translation + +415: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +415: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +415: Test timeout computed to be: 1500 +409: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +409: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt +409: EXPECTED_ERRNO is +406: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +406: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f.txt +406: EXPECTED_ERRNO is +443: RETVAL: 0 +443: STDOUT: Loading fixed image [0]: gauss-2.mha +443: Loading moving image [0]: gauss-5.mha +443: Launching registration worker thread +443: Inside registration worker thread +443: Doing registration stage +443: [1] xf_in->m_type = 0, xf_out->m_type = 0 +443: RESAMPLE 1 1: (2 2 2), (2 2 2) +443: RESAMPLE 1 1: (2 2 2), (2 2 2) +443: volume_calc_grad complete. +443: bspline_xform_initialize +443: rdims = (2,2,2) +443: vox_per_rgn = (11,11,11) +443: cdims = (5 5 5) +443: Algorithm flavor = g +443: Threading = 0 +443: >> Checking JH allocation +443: BSPLINE PARMS +443: max_its = 10 +443: max_feval = 10 +443: BSPLINE XFORM HEADER +443: vox_per_rgn = 11 11 11 +443: roi_offset = 0 0 0 +443: roi_dim = 19 19 19 +443: img_dc = 1 0 0 0 1 0 0 0 1 +443: BST METRICS +443: MET 110100 MSE 1.000000 +443: Setting nmax, mmax = 375 21 +443: >>> START +443: This problem is unconstrained. +443: [ 0, 0] MSE 13049.518 NV 6859 GM -1702.194 GN 529 [ 0.031 s ] +443: CMIN 0.00 CAVG 0.00 CMAX 0.00 +443: LSD 0.00 +443: [ 0, 1] MSE 12469.547 NV 6859 GM -1637.952 GN 509 [ 0.027 s ] +443: CMIN -0.05 CAVG 0.01 CMAX 0.74 +443: LSD 1.00 +443: [ 0, 2] MSE 10357.764 NV 6859 GM -1646.825 GN 515 [ 0.046 s ] +443: CMIN -0.26 CAVG 0.04 CMAX 3.71 +443: LSD 5.00 +443: [ 0, 3] MSE 1944.747 NV 6295 GM -809.887 GN 247 [ 0.029 s ] +443: CMIN -1.11 CAVG 0.18 CMAX 15.56 +443: LSD 21.00 +443: [ 1, 4] MSE 891.268 NV 5678 GM 504.524 GN 187 [ 0.048 s ] +443: CMIN -1.50 CAVG 0.35 CMAX 29.17 +443: LSD 19.59 +443: [ 2, 5] MSE 117.931 NV 5939 GM -11.010 GN 12.8 [ 0.040 s ] +443: CMIN -1.27 CAVG 0.29 CMAX 23.54 +443: LSD 8.47 +443: [ 3, 6] MSE 110.217 NV 5931 GM -24.361 GN 9.26 [ 0.031 s ] +443: CMIN -1.44 CAVG 0.29 CMAX 23.60 +443: LSD 0.55 +443: [ 4, 7] MSE 101.235 NV 5928 GM -14.715 GN 10.7 [ 0.032 s ] +443: CMIN -1.88 CAVG 0.29 CMAX 23.41 +443: LSD 1.34 +443: [ 5, 8] MSE 89.096 NV 5930 GM -23.801 GN 14.1 [ 0.023 s ] +443: CMIN -2.79 CAVG 0.31 CMAX 22.44 +443: LSD 2.74 +443: [ 6, 9] MSE 76.413 NV 5947 GM 60.289 GN 16.9 [ 0.010 s ] +443: CMIN -4.30 CAVG 0.34 CMAX 20.28 +443: LSD 5.25 +443: [ 7, 10] MSE 68.670 NV 5976 GM -50.552 GN 14.5 [ 0.043 s ] +443: CMIN -6.00 CAVG 0.36 CMAX 17.22 +443: LSD 5.96 +443: [2] xf_out->m_type = 9, xf_in->m_type = 0 +443: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +443: bspline_xform_initialize +443: rdims = (2,2,2) +443: vox_per_rgn = (22,22,22) +443: cdims = (5 5 5) +443: ** Registration worker thread finished. +443: Writing transformation ... +443: Warping... +443: Running: plm_warp_native +443: Converting input image... +443: Converting xform... +443: bspline_xform_initialize +443: rdims = (2,2,2) +443: vox_per_rgn = (22,22,22) +443: cdims = (5 5 5) +443: Creating output vf... +443: Creating output volume... +443: Running native warper... +443: bspline_warp complete. +443: Back convert to original type... +443: > Convert vf to itk +443: > Conversion complete. +443: plm_warp_native is complete. +443: Saving image... +443: Trying to write image to plm-reg-compose-img.mha +443: Saving vf... +443: Trying to write image to plm-reg-compose-vf.mha +443: Load: 0.105519 +443: Run: 0.386738 +443: Save: 0.0830829 +443: Total: 0.57534 +443: Finished! +443: +443: STDERR: +443: Not an error + 93/578 Test #443: plm-reg-compose ....................... Passed 0.80 sec +test 424 + Start 424: plm-reg-process-a + +424: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +424: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +424: Test timeout computed to be: 1500 +262: RETVAL: 0 +262: STDOUT: Gamma dose max is 10.000000 +262: Time = 0.005201 seconds +262: Gamma calculation is under progress... +262: analysis threshold = 1.00 Gy +262: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha +262: Pass rate = 100.000000 % +262: +262: STDERR: +262: Not an error +412: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +412: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt +412: EXPECTED_ERRNO is +311: RETVAL: 0 +311: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +311: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +311: Launching registration worker thread +311: Inside registration worker thread +311: Doing registration stage +311: [1] xf_in->m_type = 0, xf_out->m_type = 0 +311: RESAMPLE 1 1: (2 2 2), (2 2 2) +311: RESAMPLE 1 1: (2 2 2), (2 2 2) +311: volume_calc_grad complete. +311: bspline_xform_initialize +311: rdims = (2,2,2) +311: vox_per_rgn = (11,11,11) +311: cdims = (5 5 5) +311: Algorithm flavor = c +311: Threading = 0 +311: >> Checking JH allocation +311: BSPLINE PARMS +311: max_its = 5 +311: max_feval = 5 +311: BSPLINE XFORM HEADER +311: vox_per_rgn = 11 11 11 +311: roi_offset = 0 0 0 +311: roi_dim = 19 19 19 +311: img_dc = 1 0 0 0 1 0 0 0 1 +311: BST METRICS +311: MET 110100 MSE 1.000000 +311: Setting nmax, mmax = 375 21 +311: >>> START +311: This problem is unconstrained. +311: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.003 s ] +311: CMIN 0.00 CAVG 0.00 CMAX 0.00 +311: LSD 0.00 +311: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.005 s ] +311: CMIN -0.07 CAVG 0.01 CMAX 0.68 +311: LSD 1.00 +311: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.004 s ] +311: CMIN -0.35 CAVG 0.05 CMAX 3.40 +311: LSD 5.00 +311: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.004 s ] +311: CMIN -1.48 CAVG 0.20 CMAX 14.26 +311: LSD 21.00 +311: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.004 s ] +311: CMIN -1.74 CAVG 0.44 CMAX 32.50 +311: LSD 27.95 +311: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.003 s ] +311: CMIN -1.73 CAVG 0.34 CMAX 23.99 +311: LSD 13.11 +311: [2] xf_out->m_type = 9, xf_in->m_type = 0 +311: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +311: bspline_xform_initialize +311: rdims = (2,2,2) +311: vox_per_rgn = (22,22,22) +311: cdims = (5 5 5) +311: ** Registration worker thread finished. +311: Writing transformation ... +311: Warping... +311: Running: plm_warp_native +311: Converting input image... +311: Converting xform... +311: bspline_xform_initialize +311: rdims = (2,2,2) +311: vox_per_rgn = (22,22,22) +311: cdims = (5 5 5) +311: Creating output vf... +311: Creating output volume... +311: Running native warper... +311: bspline_warp complete. +311: Back convert to original type... +311: > Convert vf to itk +311: > Conversion complete. +311: plm_warp_native is complete. +311: Saving image... +311: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha +311: Saving vf... +311: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-vf.mha +311: Load: 0.0518188 +311: Run: 0.028918 +311: Save: 0.0436699 +311: Total: 0.124407 +311: Finished! +311: +311: STDERR: +311: Not an error +415: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +415: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt +415: EXPECTED_ERRNO is + 94/578 Test #311: plm-bsp-mse-c ......................... Passed 0.39 sec +test 427 + Start 427: plm-reg-trans-a + +427: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +427: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +427: Test timeout computed to be: 1500 + 95/578 Test #262: plm-gamma-a ........................... Passed 0.48 sec +test 430 + Start 430: plm-reg-trans-b + +430: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +430: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +430: Test timeout computed to be: 1500 +424: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +424: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt +424: EXPECTED_ERRNO is +427: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +427: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt +427: EXPECTED_ERRNO is +275: RETVAL: 0 +275: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd +275: +275: STDERR: +275: Not an error +430: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +430: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt +430: EXPECTED_ERRNO is + 96/578 Test #275: plm-multiply-a ........................ Passed 0.50 sec +test 433 + Start 433: plm-reg-trans-mi-a + +433: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +433: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +433: Test timeout computed to be: 1500 +433: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +433: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt +433: EXPECTED_ERRNO is +358: RETVAL: 0 +358: STDOUT: Loading fixed image [0]: gauss-ushort-1.mha +358: Loading moving image [0]: gauss-ushort-2.mha +358: Launching registration worker thread +358: Inside registration worker thread +358: Doing registration stage +358: [1] xf_in->m_type = 0, xf_out->m_type = 0 +358: RESAMPLE 1 1: (2 2 2), (2 2 2) +358: RESAMPLE 1 1: (2 2 2), (2 2 2) +358: volume_calc_grad complete. +358: bspline_xform_initialize +358: rdims = (2,2,2) +358: vox_per_rgn = (11,11,11) +358: cdims = (5 5 5) +358: Algorithm flavor = h +358: Threading = 0 +358: >> Checking JH allocation +358: BSPLINE PARMS +358: max_its = 5 +358: max_feval = 5 +358: BSPLINE XFORM HEADER +358: vox_per_rgn = 11 11 11 +358: roi_offset = 0 0 0 +358: roi_dim = 19 19 19 +358: img_dc = 1 0 0 0 1 0 0 0 1 +358: BST METRICS +358: MET 110100 MSE 1.000000 +358: Setting nmax, mmax = 375 21 +358: >>> START +358: This problem is unconstrained. +358: [ 0, 0] MSE 18754.957 NV 6859 GM -2979.950 GN 852 [ 0.004 s ] +358: CMIN 0.00 CAVG 0.00 CMAX 0.00 +358: LSD 0.00 +358: [ 0, 1] MSE 17837.379 NV 6859 GM -2882.285 GN 824 [ 0.004 s ] +358: CMIN -0.07 CAVG 0.01 CMAX 0.68 +358: LSD 1.00 +358: [ 0, 2] MSE 14463.688 NV 6858 GM -2822.063 GN 824 [ 0.003 s ] +358: CMIN -0.35 CAVG 0.05 CMAX 3.40 +358: LSD 5.00 +358: [ 0, 3] MSE 3828.428 NV 6286 GM -1585.519 GN 459 [ 0.003 s ] +358: CMIN -1.48 CAVG 0.20 CMAX 14.26 +358: LSD 21.00 +358: [ 1, 4] MSE 3098.900 NV 5455 GM 1176.149 GN 399 [ 0.003 s ] +358: CMIN -1.74 CAVG 0.44 CMAX 32.50 +358: LSD 27.95 +358: [ 2, 5] MSE 281.899 NV 5851 GM 54.406 GN 43.4 [ 0.003 s ] +358: CMIN -1.73 CAVG 0.34 CMAX 23.98 +358: LSD 13.11 +358: [2] xf_out->m_type = 9, xf_in->m_type = 0 +358: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +358: bspline_xform_initialize +358: rdims = (2,2,2) +358: vox_per_rgn = (22,22,22) +358: cdims = (5 5 5) +358: ** Registration worker thread finished. +358: Writing transformation ... +358: Warping... +358: Running: plm_warp_native +358: Converting input image... +358: Converting xform... +358: bspline_xform_initialize +358: rdims = (2,2,2) +358: vox_per_rgn = (22,22,22) +358: cdims = (5 5 5) +358: Creating output vf... +358: Creating output volume... +358: Running native warper... +358: bspline_warp complete. +358: Back convert to original type... +358: > Convert vf to itk +358: > Conversion complete. +358: plm_warp_native is complete. +358: Saving image... +358: Trying to write image to plm-bsp-ushort-img.mha +358: Saving vf... +358: Trying to write image to plm-bsp-ushort-vf.mha +358: Load: 0.058856 +358: Run: 0.029408 +358: Save: 0.090693 +358: Total: 0.178957 +358: Finished! +358: +358: STDERR: 326: RETVAL: 0 326: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 326: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -8458,22 +8211,22 @@ 326: Setting nmax, mmax = 375 21 326: >>> START 326: This problem is unconstrained. -326: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.026 s ] +326: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.008 s ] 326: CMIN 0.00 CAVG 0.00 CMAX 0.00 326: LSD 0.00 -326: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.013 s ] +326: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.007 s ] 326: CMIN -0.07 CAVG 0.01 CMAX 0.68 326: LSD 1.00 -326: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.026 s ] +326: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.004 s ] 326: CMIN -0.35 CAVG 0.05 CMAX 3.40 326: LSD 5.00 -326: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.005 s ] +326: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.006 s ] 326: CMIN -1.48 CAVG 0.20 CMAX 14.26 326: LSD 21.00 -326: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.009 s ] +326: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.004 s ] 326: CMIN -1.74 CAVG 0.44 CMAX 32.50 326: LSD 27.95 -326: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.012 s ] +326: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.004 s ] 326: CMIN -1.73 CAVG 0.34 CMAX 23.99 326: LSD 13.11 326: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -8504,24 +8257,134 @@ 326: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha 326: Saving vf... 326: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-vf.mha -326: Load: 0.091862 -326: Run: 0.1285 -326: Save: 0.136731 -326: Total: 0.357093 +326: Load: 0.06512 +326: Run: 0.043252 +326: Save: 0.0874789 +326: Total: 0.195851 326: Finished! 326: 326: STDERR: -326: Not an error -105/578 Test #326: plm-bsp-mse-l ......................... Passed 0.84 sec -test 382 - Start 382: plm-bsp-landmark-c +358: Not an error + 97/578 Test #358: plm-bsp-ushort ........................ Passed 0.52 sec +test 436 + Start 436: plm-reg-autores-a -382: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -382: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -382: Test timeout computed to be: 1500 -382: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -382: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c.txt -382: EXPECTED_ERRNO is +436: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +436: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +436: Test timeout computed to be: 1500 +301: RETVAL: 0 +301: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +301: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +301: Launching registration worker thread +301: Inside registration worker thread +301: Doing registration stage +301: [1] xf_in->m_type = 0, xf_out->m_type = 0 +301: Ready to start registration. +301: MSE [ 0] 18945.891 [ 0.043 secs] +301: MSE [ 1] 9752.760 [ 0.046 secs] +301: MSE [ 2] 3751.365 [ 0.049 secs] +301: MSE [ 3] 960.721 [ 0.082 secs] +301: MSE [ 4] 204.827 [ 0.033 secs] +301: Done with registration. Writing output... +301: Deformation stats (out) +301: VF_MAX = 97.6986 VF_AVG = 31.9237 +301: [2] xf_out->m_type = 8, xf_in->m_type = 0 +301: ** Registration worker thread finished. +301: Warping... +301: plm_warp_itk: xform_to_itk_vf +301: plm_warp_itk: convert_to_itk +301: plm_warp_itk: warping... +301: Saving image... +301: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha +301: Saving vf... +301: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-vf.mha +301: Load: 0.0443342 +301: Run: 0.253338 +301: Save: 0.0965881 +301: Total: 0.39426 +301: Finished! +301: +301: STDERR: +365: RETVAL: 0 +365: STDOUT: Loading fixed image [0]: rect-2.mha +365: Loading moving image [0]: rect-3.mha +365: Launching registration worker thread +365: Inside registration worker thread +365: Doing registration stage +365: [1] xf_in->m_type = 0, xf_out->m_type = 0 +365: RESAMPLE 1 1: (2 2 2), (2 2 2) +365: RESAMPLE 1 1: (2 2 2), (2 2 2) +365: volume_calc_grad complete. +365: bspline_xform_initialize +365: Warning: vox_per_rgn was less than 4. +365: Warning: vox_per_rgn was less than 4. +365: Warning: vox_per_rgn was less than 4. +365: rdims = (5,5,5) +365: vox_per_rgn = (4,4,4) +365: cdims = (8 8 8) +365: Algorithm flavor = h +365: Threading = 0 +365: >> Checking JH allocation +365: BSPLINE PARMS +365: max_its = 5 +365: max_feval = 5 +365: BSPLINE XFORM HEADER +365: vox_per_rgn = 4 4 4 +365: roi_offset = 0 0 0 +365: roi_dim = 19 19 19 +365: img_dc = 1 0 0 0 1 0 0 0 1 +365: BST METRICS +365: MET 110100 MSE 1.000000 +365: Setting nmax, mmax = 1536 41 +365: >>> START +365: This problem is unconstrained. +365: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.004 s ] +365: CMIN 0.00 CAVG 0.00 CMAX 0.00 +365: LSD 0.00 +365: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.004 s ] +365: CMIN -0.60 CAVG -0.00 CMAX 0.08 +365: LSD 1.00 +365: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.004 s ] +365: CMIN -2.99 CAVG -0.01 CMAX 0.42 +365: LSD 5.00 +365: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.004 s ] +365: CMIN -12.56 CAVG -0.05 CMAX 1.74 +365: LSD 21.00 +365: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.004 s ] +365: CMIN -54.37 CAVG -0.20 CMAX 6.52 +365: LSD 67.10 +365: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.004 s ] +365: CMIN -51.91 CAVG -0.18 CMAX 5.91 +365: LSD 13.48 +365: [2] xf_out->m_type = 9, xf_in->m_type = 0 +365: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +365: bspline_xform_initialize +365: rdims = (5,5,5) +365: vox_per_rgn = (8,8,8) +365: cdims = (8 8 8) +365: ** Registration worker thread finished. +365: Warping... +365: Running: plm_warp_native +365: Converting input image... +365: Converting xform... +365: bspline_xform_initialize +365: rdims = (5,5,5) +365: vox_per_rgn = (8,8,8) +365: cdims = (8 8 8) +365: Creating output volume... +365: Running native warper... +365: bspline_warp complete. +365: Back convert to original type... +365: plm_warp_native is complete. +365: Saving image... +365: Trying to write image to plm-bsp-char-output.mha +365: Load: 0.08338 +365: Run: 0.0320921 +365: Save: 0.0974829 +365: Total: 0.212955 +365: Finished! +365: +365: STDERR: 288: RETVAL: 0 288: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha 288: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha @@ -8548,17 +8411,17 @@ 288: Initial Parameters = [0, 0, 0, 0, 0, 0] 288: Starting ITK registration 288: StartEvent: [0, 0, 0, 0, 0, 0] -288: MSE [ 0, 0,10.00] 1339.481 [-1.784608571791878e-20, 8.106231711374455e-8, -8.106231711501361e-8, 9.999999999999996, -1.0950060761753023e-14, -1.0973359818106971e-14] +288: MSE [ 0, 0,10.00] 1339.481 [-1.2690549843853355e-19, 8.106231710930287e-8, -8.10623171166634e-8, 9.999999999999996, -1.0989223005411788e-14, -1.0957496630802156e-14] 288: :: [0, 0, 0, 0, 0, 0] 288: * -288: MSE [ 1, 1,10.00] 368.982 [3.6794335908579234e-18, 1.6278511949768047e-7, -1.627851205608253e-7, 19.999999999999915, 8.96985283774683e-7, 8.969852834850857e-7] -970.50 -288: :: [-1.784608571791878e-20, 8.106231711374455e-8, -8.106231711501361e-8, 9.999999999999996, -1.0950060761753023e-14, -1.0973359818106971e-14] +288: MSE [ 1, 1,10.00] 368.982 [3.948814588187704e-18, 1.6278511950118221e-7, -1.6278512055969494e-7, 19.999999999999915, 8.96985283760344e-7, 8.969852838484713e-7] -970.50 +288: :: [-1.2690549843853355e-19, 8.106231710930287e-8, -8.10623171166634e-8, 9.999999999999996, -1.0989223005411788e-14, -1.0957496630802156e-14] 288: * -288: MSE [ 2, 2, 5.00] 181.733 [-2.226927551957881e-17, 5.896377564314867e-7, -5.896377772936519e-7, 15.000000000001307, 0.0000033932258790082873, 0.0000033932258291278935] -187.25 -288: :: [3.6794335908579234e-18, 1.6278511949768047e-7, -1.627851205608253e-7, 19.999999999999915, 8.96985283774683e-7, 8.969852834850857e-7] +288: MSE [ 2, 2, 5.00] 181.733 [-2.480972382701075e-17, 5.896377564993908e-7, -5.896377773035806e-7, 15.000000000001307, 0.0000033932258796038175, 0.0000033932258302637807] -187.25 +288: :: [3.948814588187704e-18, 1.6278511950118221e-7, -1.6278512055969494e-7, 19.999999999999915, 8.96985283760344e-7, 8.969852838484713e-7] 288: * -288: MSE [ 3, 3, 2.50] 183.524 [-2.4488824432911888e-17, 8.131742570237874e-7, -8.131742896605994e-7, 17.499999999998433, 0.000006036537006680061, 0.000006036536833068315] 1.79 (tol) -288: EndEvent: [-2.4488824432911888e-17, 8.131742570237874e-7, -8.131742896605994e-7, 17.499999999998433, 0.000006036537006680061, 0.000006036536833068315] +288: MSE [ 3, 3, 2.50] 183.524 [-3.426598434163539e-17, 8.13174257136225e-7, -8.131742896680259e-7, 17.499999999998433, 0.000006036537006926167, 0.0000060365368355038775] 1.79 (tol) +288: EndEvent: [-3.426598434163539e-17, 8.13174257136225e-7, -8.131742896680259e-7, 17.499999999998433, 0.000006036537006926167, 0.0000060365368355038775] 288: VersorTransformOptimizer: Maximum number of iterations (1) exceeded. 288: ITK registration complete 288: [2] xf_out->m_type = 2, xf_in->m_type = 0 @@ -8586,17 +8449,17 @@ 288: 1 0 0 288: 0 1 0 288: 0 0 1 -288: Initial Parameters = [3.6794335908579234e-18, 1.6278511949768047e-7, -1.627851205608253e-7, 19.999999999999915, 8.96985283774683e-7, 8.969852834850857e-7] +288: Initial Parameters = [3.948814588187704e-18, 1.6278511950118221e-7, -1.6278512055969494e-7, 19.999999999999915, 8.96985283760344e-7, 8.969852838484713e-7] 288: Starting ITK registration -288: StartEvent: [3.6794335908579234e-18, 1.6278511949768047e-7, -1.627851205608253e-7, 19.999999999999915, 8.96985283774683e-7, 8.969852834850857e-7] -288: MSE [ 0, 0,10.00] 616.559 [2.8177339588783304e-16, -0.000003330236049592176, 0.0000033302359475967952, 10.000000000052827, -0.000021019174512107825, -0.000021019174444061924] -288: :: [3.6794335908579234e-18, 1.6278511949768047e-7, -1.627851205608253e-7, 19.999999999999915, 8.96985283774683e-7, 8.969852834850857e-7] +288: StartEvent: [3.948814588187704e-18, 1.6278511950118221e-7, -1.6278512055969494e-7, 19.999999999999915, 8.96985283760344e-7, 8.969852838484713e-7] +288: MSE [ 0, 0,10.00] 616.559 [2.78808067201291e-16, -0.0000033302360496369253, 0.000003330235947601865, 10.000000000052827, -0.00002101917451086502, -0.0000210191744504839] +288: :: [3.948814588187704e-18, 1.6278511950118221e-7, -1.6278512055969494e-7, 19.999999999999915, 8.96985283760344e-7, 8.969852838484713e-7] 288: * -288: MSE [ 1, 1, 5.00] 1335.870 [9.06964411040046e-17, -0.0000019933576717808963, 0.00000199335764190465, 14.999999999919202, -0.000046728744956036336, -0.00004672874598306005] 719.31 -288: MSE [ 2, 2, 5.00] 909.428 [-2.1995658055871495e-17, -9.215023616345772e-7, 9.215023821550747e-7, 19.999999999667782, -0.000011337953196536401, -0.000011337953395416823] -426.44 -288: MSE [ 3, 3, 2.50] 616.561 [8.277967885605286e-16, 0.000004240909186394638, -0.000004240909078707174, 17.50000000232825, 0.00006956053054522207, 0.00006956053212746777] -292.87 -288: MSE [ 4, 4, 1.25] 668.182 [3.287262884465748e-16, 0.0000031399063411184857, -0.0000031399063052338646, 18.750000001560984, 0.000038669894861588006, 0.000038669895750214276] 51.62 -288: EndEvent: [3.287262884465748e-16, 0.0000031399063411184857, -0.0000031399063052338646, 18.750000001560984, 0.000038669894861588006, 0.000038669895750214276] +288: MSE [ 1, 1, 5.00] 1335.870 [8.582730722884134e-17, -0.0000019933576718210944, 0.0000019933576419261905, 14.9999999999192, -0.000046728744954905763, -0.000046728745989989945] 719.31 +288: MSE [ 2, 2, 5.00] 909.428 [-2.6289800410106318e-17, -9.21502361697532e-7, 9.215023822086894e-7, 19.99999999966778, -0.00001133795319662742, -0.00001133795339801649] -426.44 +288: MSE [ 3, 3, 2.50] 616.561 [6.777731293502111e-16, 0.000004240909186579087, -0.000004240909079880501, 17.500000002328246, 0.00006956053055446652, 0.00006956053211996925] -292.87 +288: MSE [ 4, 4, 1.25] 668.182 [2.2707612715849427e-16, 0.0000031399063411274567, -0.000003139906306104394, 18.75000000156098, 0.000038669894867269056, 0.000038669895748187] 51.62 +288: EndEvent: [2.2707612715849427e-16, 0.0000031399063411274567, -0.000003139906306104394, 18.75000000156098, 0.000038669894867269056, 0.000038669895748187] 288: VersorTransformOptimizer: Maximum number of iterations (5) exceeded. 288: ITK registration complete 288: [2] xf_out->m_type = 2, xf_in->m_type = 2 @@ -8610,156 +8473,64 @@ 288: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha 288: Saving vf... 288: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-vf.mha -288: Load: 0.173975 -288: Run: 0.374562 -288: Save: 0.019593 -288: Total: 0.56813 +288: Load: 0.0513411 +288: Run: 0.284562 +288: Save: 0.0553339 +288: Total: 0.391237 288: Finished! 288: 288: STDERR: -288: Not an error -106/578 Test #288: plm-reg-itk-rigid-a ................... Passed 1.29 sec -test 385 - Start 385: plm-bsp-landmark-d - -385: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -385: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -385: Test timeout computed to be: 1500 -301: RETVAL: 0 -301: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -301: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -301: Launching registration worker thread -301: Inside registration worker thread -301: Doing registration stage -301: [1] xf_in->m_type = 0, xf_out->m_type = 0 -301: Ready to start registration. -301: MSE [ 0] 18945.891 [ 0.119 secs] -301: MSE [ 1] 9752.760 [ 0.096 secs] -301: MSE [ 2] 3751.365 [ 0.088 secs] -301: MSE [ 3] 960.721 [ 0.100 secs] -301: MSE [ 4] 204.827 [ 0.068 secs] -301: Done with registration. Writing output... -301: Deformation stats (out) -301: VF_MAX = 97.6986 VF_AVG = 31.9237 -301: [2] xf_out->m_type = 8, xf_in->m_type = 0 -301: ** Registration worker thread finished. -301: Warping... -301: plm_warp_itk: xform_to_itk_vf -301: plm_warp_itk: convert_to_itk -301: plm_warp_itk: warping... -301: Saving image... -301: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha -301: Saving vf... -301: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-vf.mha -301: Load: 0.106952 -301: Run: 0.514184 -301: Save: 0.0416272 -301: Total: 0.662763 -301: Finished! -301: -301: STDERR: -320: RETVAL: 0 -320: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -320: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -320: Launching registration worker thread -320: Inside registration worker thread -320: Doing registration stage -320: [1] xf_in->m_type = 0, xf_out->m_type = 0 -320: RESAMPLE 1 1: (2 2 2), (2 2 2) -320: RESAMPLE 1 1: (2 2 2), (2 2 2) -320: volume_calc_grad complete. -320: bspline_xform_initialize -320: rdims = (2,2,2) -320: vox_per_rgn = (11,11,11) -320: cdims = (5 5 5) -320: Algorithm flavor = i -320: Threading = 0 -320: >> Checking JH allocation -320: BSPLINE PARMS -320: max_its = 5 -320: max_feval = 5 -320: BSPLINE XFORM HEADER -320: vox_per_rgn = 11 11 11 -320: roi_offset = 0 0 0 -320: roi_dim = 19 19 19 -320: img_dc = 1 0 0 0 1 0 0 0 1 -320: BST METRICS -320: MET 110100 MSE 1.000000 -320: Setting nmax, mmax = 375 21 -320: >>> START -320: This problem is unconstrained. -320: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.069 s ] -320: CMIN 0.00 CAVG 0.00 CMAX 0.00 -320: LSD 0.00 -320: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.060 s ] -320: CMIN -0.07 CAVG 0.01 CMAX 0.68 -320: LSD 1.00 -320: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.067 s ] -320: CMIN -0.35 CAVG 0.05 CMAX 3.40 -320: LSD 5.00 -320: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.075 s ] -320: CMIN -1.48 CAVG 0.20 CMAX 14.26 -320: LSD 21.00 -320: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.027 s ] -320: CMIN -1.74 CAVG 0.44 CMAX 32.50 -320: LSD 27.95 -320: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.037 s ] -320: CMIN -1.73 CAVG 0.34 CMAX 23.99 -320: LSD 13.11 -320: [2] xf_out->m_type = 9, xf_in->m_type = 0 -320: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -320: bspline_xform_initialize -320: rdims = (2,2,2) -320: vox_per_rgn = (22,22,22) -320: cdims = (5 5 5) -320: ** Registration worker thread finished. -320: Writing transformation ... -320: Warping... -320: Running: plm_warp_native -320: Converting input image... -320: Converting xform... -320: bspline_xform_initialize -320: rdims = (2,2,2) -320: vox_per_rgn = (22,22,22) -320: cdims = (5 5 5) -320: Creating output vf... -320: Creating output volume... -320: Running native warper... -320: bspline_warp complete. -320: Back convert to original type... -320: > Convert vf to itk -320: > Conversion complete. -320: plm_warp_native is complete. -320: Saving image... -320: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha -320: Saving vf... -320: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-vf.mha -320: Load: 0.0863822 -320: Run: 0.387588 -320: Save: 0.102528 -320: Total: 0.576498 -320: Finished! -320: -320: STDERR: -301: Not an error -385: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -385: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d.txt -385: EXPECTED_ERRNO is -320: Not an error -107/578 Test #301: plm-reg-itk-demons .................... Passed 1.16 sec -test 388 - Start 388: plm-bsp-landmark-e - -388: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -388: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -388: Test timeout computed to be: 1500 -108/578 Test #320: plm-bsp-mse-i ......................... Passed 1.12 sec -test 391 - Start 391: plm-bsp-dcos-a +436: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +436: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt +436: EXPECTED_ERRNO is +206: RETVAL: 0 +206: STDOUT: CT_SERIES_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3207456.1751858934.851164| +206: CT_STUDY_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3207456.1751858934.851180| +206: CT_FRAME_OF_REFERENCE_UID|1.2.826.0.1.3680043.8.274.1.1.8323329.3207456.1751858934.851181| +206: PATIENT_NAME|ANONYMOUS| +206: PATIENT_ID|PL944909114091202| +206: PATIENT_SEX|O| +206: STUDY_ID|10001| +206: OFFSET|-55.2632 -55.2632 -46.0526| +206: DIMENSION|512 512 7| +206: SPACING|0.215872 0.215872 13.1579| +206: ROI_NAMES|| +206: Starting structure parsing +206: Starting contour parsing +206: Setting PIH from structure set spacing +206: PIH is: +206: Origin = -55.2632 -55.2632 -46.0526 +206: Size = 512 512 7 +206: Spacing = 0.2159 0.2159 13.1579 +206: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +206: Rt_study_warp: Convert ss_img to cxt. +206: Rt_study_warp: Apply dicom_dir. +206: Rt_study_warp: Set geometry from PIH. +206: Rt_study_warp: Set rasterization geometry. +206: rast_dim = 512 512 7 +206: rast_offset = -55.2632 -55.2632 -46.0526 +206: rast_spacing = 0.215872 0.215872 13.1579 +206: Rt_study_warp: warp and save ss. +206: Warp_and_save_ss: seg->rasterize +206: Rasterizing... +206: Converting... +206: Finished rasterization. +206: Warp_and_save_ss: save_ss_img +206: save_ss_img: save_ss_image +206: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha +206: save_ss_img: save_ss_list +206: Done. +206: Finished! +206: +206: STDERR: +326: Not an error + 98/578 Test #326: plm-bsp-mse-l ......................... Passed 0.84 sec +test 439 + Start 439: plm-reg-autores-b -391: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -391: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -391: Test timeout computed to be: 1500 +439: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +439: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +439: Test timeout computed to be: 1500 346: RETVAL: 0 346: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 346: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha @@ -8792,46 +8563,46 @@ 346: Setting nmax, mmax = 1536 41 346: >>> START 346: This problem is unconstrained. -346: [ 0, 0] GM 172.628 NV 6859 GM -29.170 GN 4.3 [ 0.008 s ] +346: [ 0, 0] GM 172.628 NV 6859 GM -29.170 GN 4.3 [ 0.009 s ] 346: CMIN 0.00 CAVG 0.00 CMAX 0.00 346: LSD 0.00 -346: [ 0, 1] GM 167.918 NV 6859 GM -28.658 GN 4.22 [ 0.005 s ] +346: [ 0, 1] GM 167.918 NV 6859 GM -28.658 GN 4.22 [ 0.006 s ] 346: CMIN -0.13 CAVG 0.00 CMAX 0.22 346: LSD 1.00 -346: [ 0, 2] GM 149.959 NV 6859 GM -26.618 GN 3.91 [ 0.005 s ] +346: [ 0, 2] GM 149.959 NV 6859 GM -26.618 GN 3.91 [ 0.013 s ] 346: CMIN -0.66 CAVG 0.02 CMAX 1.08 346: LSD 5.00 -346: [ 0, 3] GM 86.734 NV 6751 GM -21.624 GN 3.16 [ 0.005 s ] +346: [ 0, 3] GM 86.734 NV 6751 GM -21.624 GN 3.16 [ 0.017 s ] 346: CMIN -2.76 CAVG 0.09 CMAX 4.52 346: LSD 21.00 -346: [ 1, 4] GM 45.340 NV 6066 GM 12.985 GN 2.28 [ 0.009 s ] +346: [ 1, 4] GM 45.340 NV 6066 GM 12.985 GN 2.28 [ 0.004 s ] 346: CMIN -8.79 CAVG 0.42 CMAX 26.13 346: LSD 77.01 -346: [ 2, 5] GM 7.1179175 NV 6185 GM -1.370 GN 0.385 [ 0.014 s ] +346: [ 2, 5] GM 7.1179175 NV 6185 GM -1.370 GN 0.385 [ 0.005 s ] 346: CMIN -7.46 CAVG 0.30 CMAX 17.43 346: LSD 31.38 -346: [ 3, 6] GM 5.8718486 NV 6215 GM -1.061 GN 0.253 [ 0.005 s ] +346: [ 3, 6] GM 5.8718486 NV 6215 GM -1.061 GN 0.253 [ 0.008 s ] 346: CMIN -7.26 CAVG 0.31 CMAX 16.96 346: LSD 4.23 -346: [ 4, 7] GM 4.1875200 NV 6252 GM -0.481 GN 0.302 [ 0.013 s ] +346: [ 4, 7] GM 4.1875200 NV 6252 GM -0.481 GN 0.302 [ 0.004 s ] 346: CMIN -7.17 CAVG 0.33 CMAX 15.50 346: LSD 8.87 -346: [ 5, 8] GM 2.5404434 NV 6268 GM 0.199 GN 0.327 [ 0.014 s ] +346: [ 5, 8] GM 2.5404434 NV 6268 GM 0.199 GN 0.327 [ 0.006 s ] 346: CMIN -7.33 CAVG 0.37 CMAX 12.64 346: LSD 13.58 -346: [ 6, 9] GM 1.5809063 NV 6272 GM 0.253 GN 0.261 [ 0.013 s ] +346: [ 6, 9] GM 1.5809063 NV 6272 GM 0.253 GN 0.261 [ 0.004 s ] 346: CMIN -7.57 CAVG 0.41 CMAX 16.21 346: LSD 17.78 -346: [ 7, 10] GM 1.2611113 NV 6186 GM -0.858 GN 0.254 [ 0.006 s ] +346: [ 7, 10] GM 1.2611113 NV 6186 GM -0.858 GN 0.254 [ 0.004 s ] 346: CMIN -8.47 CAVG 0.41 CMAX 17.69 346: LSD 6.01 346: [ 8, 11] GM 0.8998204 NV 6202 GM -0.272 GN 0.0629 [ 0.004 s ] 346: CMIN -8.10 CAVG 0.41 CMAX 16.37 346: LSD 4.02 -346: [ 9, 12] GM 0.8851209 NV 6200 GM -0.119 GN 0.0425 [ 0.005 s ] +346: [ 9, 12] GM 0.8851209 NV 6200 GM -0.119 GN 0.0425 [ 0.004 s ] 346: CMIN -8.11 CAVG 0.41 CMAX 16.43 346: LSD 1.40 -346: [10, 13] GM 0.8340189 NV 6185 GM -0.041 GN 0.0494 [ 0.005 s ] +346: [10, 13] GM 0.8340189 NV 6185 GM -0.041 GN 0.0494 [ 0.004 s ] 346: CMIN -8.22 CAVG 0.42 CMAX 16.47 346: LSD 2.71 346: [11, 14] GM 0.7303342 NV 6158 GM 0.209 GN 0.0438 [ 0.004 s ] @@ -8852,7 +8623,7 @@ 346: [16, 19] GM 0.4685278 NV 6160 GM 0.115 GN 0.0395 [ 0.004 s ] 346: CMIN -7.51 CAVG 0.46 CMAX 15.22 346: LSD 3.59 -346: [16, 20] GM 0.4544649 NV 6161 GM 0.152 GN 0.026 [ 0.004 s ] +346: [16, 20] GM 0.4544649 NV 6161 GM 0.152 GN 0.026 [ 0.003 s ] 346: CMIN -7.71 CAVG 0.46 CMAX 14.89 346: LSD 1.09 346: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -8883,47 +8654,198 @@ 346: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha 346: Saving vf... 346: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-vf.mha -346: Load: 0.21922 -346: Run: 0.176906 -346: Save: 0.101268 -346: Total: 0.497394 +346: Load: 0.0918529 +346: Run: 0.167413 +346: Save: 0.210792 +346: Total: 0.470058 346: Finished! 346: 346: STDERR: +343: RETVAL: 0 +343: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +343: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha +343: Launching registration worker thread +343: Inside registration worker thread +343: Doing registration stage +343: [1] xf_in->m_type = 0, xf_out->m_type = 0 +343: RESAMPLE 1 1: (2 2 2), (2 2 2) +343: RESAMPLE 1 1: (2 2 2), (2 2 2) +343: volume_calc_grad complete. +343: bspline_xform_initialize +343: rdims = (5,5,5) +343: vox_per_rgn = (4,4,4) +343: cdims = (8 8 8) +343: Algorithm flavor = k +343: Threading = 0 +343: >> Checking JH allocation +343: >> Performing JH allocation +343: BSPLINE PARMS +343: max_its = 10 +343: max_feval = 10 +343: BSPLINE XFORM HEADER +343: vox_per_rgn = 4 4 4 +343: roi_offset = 0 0 0 +343: roi_dim = 19 19 19 +343: img_dc = 1 0 0 0 1 0 0 0 1 +343: BST METRICS +343: MET 110100 MI 1.000000 +343: >> Performing JH initialization +343: Setting nmax, mmax = 1536 41 +343: >>> START +343: This problem is unconstrained. +343: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.011 s ] +343: CMIN 0.01 CAVG 0.01 CMAX 0.01 +343: LSD 0.00 +343: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.009 s ] +343: CMIN -0.26 CAVG 0.01 CMAX 0.05 +343: LSD 1.00 +343: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.019 s ] +343: CMIN -0.04 CAVG 0.01 CMAX 0.02 +343: LSD 0.18 +343: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.009 s ] +343: CMIN -0.01 CAVG 0.01 CMAX 0.01 +343: LSD 0.09 +343: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.007 s ] +343: CMIN -0.01 CAVG 0.01 CMAX 0.02 +343: LSD 0.02 +343: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.014 s ] +343: CMIN -0.01 CAVG 0.01 CMAX 0.02 +343: LSD 0.02 +343: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.009 s ] +343: CMIN -0.01 CAVG 0.01 CMAX 0.02 +343: LSD 0.02 +343: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.008 s ] +343: CMIN -0.03 CAVG 0.01 CMAX 0.04 +343: LSD 0.14 +343: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.018 s ] +343: CMIN -0.03 CAVG 0.01 CMAX 0.05 +343: LSD 0.04 +343: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.038 s ] +343: CMIN -0.04 CAVG 0.01 CMAX 0.06 +343: LSD 0.03 +343: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.024 s ] +343: CMIN -0.04 CAVG 0.01 CMAX 0.07 +343: LSD 0.05 +343: [2] xf_out->m_type = 9, xf_in->m_type = 0 +343: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +343: bspline_xform_initialize +343: rdims = (5,5,5) +343: vox_per_rgn = (8,8,8) +343: cdims = (8 8 8) +343: ** Registration worker thread finished. +343: Writing transformation ... +343: Warping... +343: Running: plm_warp_native +343: Converting input image... +343: Converting xform... +343: bspline_xform_initialize +343: rdims = (5,5,5) +343: vox_per_rgn = (8,8,8) +343: cdims = (8 8 8) +343: Creating output vf... +343: Creating output volume... +343: Running native warper... +343: bspline_warp complete. +343: Back convert to original type... +343: > Convert vf to itk +343: > Conversion complete. +343: plm_warp_native is complete. +343: Saving image... +343: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha +343: Saving vf... +343: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-vf.mha +343: Load: 0.105198 +343: Run: 0.181829 +343: Save: 0.194382 +343: Total: 0.481409 +343: Finished! +343: +343: STDERR: +343: Not an error + 99/578 Test #343: plm-bsp-mi-k .......................... Passed 0.89 sec +test 444 + Start 444: plm-compose-a + +444: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +444: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +444: Test timeout computed to be: 1500 +365: Not an error +100/578 Test #365: plm-bsp-char-output ................... Passed 0.77 sec +test 448 + Start 448: plm-compose-b + +448: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +448: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +448: Test timeout computed to be: 1500 +301: Not an error +439: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +439: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt +439: EXPECTED_ERRNO is +424: RETVAL: 0 +424: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +424: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +424: Launching registration worker thread +424: Inside registration worker thread +424: *** Executing adjust process *** +424: Warping... +424: plm_warp_itk: xform_to_itk_vf +424: plm_warp_itk: convert_to_itk +424: plm_warp_itk: warping... +424: ** Registration worker thread finished. +424: Saving image... +424: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha +424: Load: 0.17883 +424: Run: 0.00208402 +424: Save: 0.020237 +424: Total: 0.201151 +424: Finished! +424: +424: STDERR: +424: Not an error +101/578 Test #301: plm-reg-itk-demons .................... Passed 0.96 sec +test 452 + Start 452: plm-compose-c + +452: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +452: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +452: Test timeout computed to be: 1500 +288: Not an error +206: Not an error 346: Not an error -388: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -388: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e.txt -388: EXPECTED_ERRNO is -109/578 Test #346: plm-bsp-gm-k .......................... Passed 1.03 sec -test 394 - Start 394: plm-bsp-dcos-b +448: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +448: PARMS is compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha +448: EXPECTED_ERRNO is +444: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +444: PARMS is compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha +444: EXPECTED_ERRNO is +102/578 Test #288: plm-reg-itk-rigid-a ................... Passed 1.02 sec +103/578 Test #346: plm-bsp-gm-k .......................... Passed 0.94 sec +104/578 Test #206: plm-convert-cxt ....................... Passed 0.84 sec +105/578 Test #424: plm-reg-process-a ..................... Passed 0.66 sec +test 456 + Start 456: plm-resample-a -394: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -394: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -394: Test timeout computed to be: 1500 -21: RETVAL: 0 -21: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha -21: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Body.mha -21: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Tumor.mha -21: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Lung.mha -21: Doing extraction -21: Keyholizing structure 0. -21: Keyholizing structure 1. -21: Keyholizing structure 2. -21: Write: DoseGridScaling = 0.000000 -21: -21: STDERR: -21: Not an error -391: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -391: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a.txt -391: EXPECTED_ERRNO is -110/578 Test #21: lung-1 ................................ Passed 6.39 sec -test 193 - Start 193: plm-convert-dicom-c +456: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +456: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +456: Test timeout computed to be: 1500 +test 459 + Start 459: plm-resample-b -193: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -193: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -193: Test timeout computed to be: 1500 +459: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +459: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +459: Test timeout computed to be: 1500 +test 465 + Start 465: plm-scale-a + +465: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +465: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +465: Test timeout computed to be: 1500 +test 468 + Start 468: plm-scale-vf-a + +468: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +468: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +468: Test timeout computed to be: 1500 323: RETVAL: 0 323: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 323: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -8957,19 +8879,19 @@ 323: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.004 s ] 323: CMIN 0.00 CAVG 0.00 CMAX 0.00 323: LSD 0.00 -323: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.020 s ] +323: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.027 s ] 323: CMIN -0.07 CAVG 0.01 CMAX 0.68 323: LSD 1.00 323: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.009 s ] 323: CMIN -0.35 CAVG 0.05 CMAX 3.40 323: LSD 5.00 -323: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.009 s ] +323: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.003 s ] 323: CMIN -1.48 CAVG 0.20 CMAX 14.26 323: LSD 21.00 -323: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.016 s ] +323: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.003 s ] 323: CMIN -1.74 CAVG 0.44 CMAX 32.50 323: LSD 27.95 -323: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.016 s ] +323: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.006 s ] 323: CMIN -1.73 CAVG 0.34 CMAX 23.99 323: LSD 13.11 323: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -9000,118 +8922,14 @@ 323: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha 323: Saving vf... 323: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-vf.mha -323: Load: 0.119038 -323: Run: 0.154855 -323: Save: 0.14254 -323: Total: 0.416433 +323: Load: 0.11534 +323: Run: 0.0622489 +323: Save: 0.454764 +323: Total: 0.632353 323: Finished! 323: 323: STDERR: 323: Not an error -394: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -394: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b.txt -394: EXPECTED_ERRNO is -111/578 Test #323: plm-bsp-mse-k ......................... Passed 1.26 sec -test 397 - Start 397: plm-bsp-dcos-c - -397: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -397: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -397: Test timeout computed to be: 1500 -193: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -193: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix -193: EXPECTED_ERRNO is -397: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -397: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c.txt -397: EXPECTED_ERRNO is -365: RETVAL: 0 -365: STDOUT: Loading fixed image [0]: rect-2.mha -365: Loading moving image [0]: rect-3.mha -365: Launching registration worker thread -365: Inside registration worker thread -365: Doing registration stage -365: [1] xf_in->m_type = 0, xf_out->m_type = 0 -365: RESAMPLE 1 1: (2 2 2), (2 2 2) -365: RESAMPLE 1 1: (2 2 2), (2 2 2) -365: volume_calc_grad complete. -365: bspline_xform_initialize -365: Warning: vox_per_rgn was less than 4. -365: Warning: vox_per_rgn was less than 4. -365: Warning: vox_per_rgn was less than 4. -365: rdims = (5,5,5) -365: vox_per_rgn = (4,4,4) -365: cdims = (8 8 8) -365: Algorithm flavor = h -365: Threading = 0 -365: >> Checking JH allocation -365: BSPLINE PARMS -365: max_its = 5 -365: max_feval = 5 -365: BSPLINE XFORM HEADER -365: vox_per_rgn = 4 4 4 -365: roi_offset = 0 0 0 -365: roi_dim = 19 19 19 -365: img_dc = 1 0 0 0 1 0 0 0 1 -365: BST METRICS -365: MET 110100 MSE 1.000000 -365: Setting nmax, mmax = 1536 41 -365: >>> START -365: This problem is unconstrained. -365: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.017 s ] -365: CMIN 0.00 CAVG 0.00 CMAX 0.00 -365: LSD 0.00 -365: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.013 s ] -365: CMIN -0.60 CAVG -0.00 CMAX 0.08 -365: LSD 1.00 -365: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.013 s ] -365: CMIN -2.99 CAVG -0.01 CMAX 0.42 -365: LSD 5.00 -365: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.021 s ] -365: CMIN -12.56 CAVG -0.05 CMAX 1.74 -365: LSD 21.00 -365: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.013 s ] -365: CMIN -54.37 CAVG -0.20 CMAX 6.52 -365: LSD 67.10 -365: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.019 s ] -365: CMIN -51.91 CAVG -0.18 CMAX 5.91 -365: LSD 13.48 -365: [2] xf_out->m_type = 9, xf_in->m_type = 0 -365: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -365: bspline_xform_initialize -365: rdims = (5,5,5) -365: vox_per_rgn = (8,8,8) -365: cdims = (8 8 8) -365: ** Registration worker thread finished. -365: Warping... -365: Running: plm_warp_native -365: Converting input image... -365: Converting xform... -365: bspline_xform_initialize -365: rdims = (5,5,5) -365: vox_per_rgn = (8,8,8) -365: cdims = (8 8 8) -365: Creating output volume... -365: Running native warper... -365: bspline_warp complete. -365: Back convert to original type... -365: plm_warp_native is complete. -365: Saving image... -365: Trying to write image to plm-bsp-char-output.mha -365: Load: 0.180296 -365: Run: 0.126975 -365: Save: 0.0895882 -365: Total: 0.396859 -365: Finished! -365: -365: STDERR: -365: Not an error -112/578 Test #365: plm-bsp-char-output ................... Passed 0.97 sec -test 400 - Start 400: plm-bsp-dcos-d - -400: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -400: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -400: Test timeout computed to be: 1500 337: RETVAL: 0 337: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 337: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha @@ -9144,37 +8962,37 @@ 337: Setting nmax, mmax = 1536 41 337: >>> START 337: This problem is unconstrained. -337: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.071 s ] +337: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.010 s ] 337: CMIN 0.01 CAVG 0.01 CMAX 0.01 337: LSD 0.00 -337: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.082 s ] +337: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.010 s ] 337: CMIN -0.26 CAVG 0.01 CMAX 0.05 337: LSD 1.00 -337: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.060 s ] +337: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.010 s ] 337: CMIN -0.04 CAVG 0.01 CMAX 0.02 337: LSD 0.18 -337: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.052 s ] +337: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.009 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.01 337: LSD 0.09 -337: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.036 s ] +337: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.009 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.02 337: LSD 0.02 -337: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.049 s ] +337: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.010 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.02 337: LSD 0.02 -337: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.036 s ] +337: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.010 s ] 337: CMIN -0.01 CAVG 0.01 CMAX 0.02 337: LSD 0.02 -337: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.028 s ] +337: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.010 s ] 337: CMIN -0.03 CAVG 0.01 CMAX 0.04 337: LSD 0.14 -337: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.025 s ] +337: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.010 s ] 337: CMIN -0.03 CAVG 0.01 CMAX 0.05 337: LSD 0.04 -337: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.025 s ] +337: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.009 s ] 337: CMIN -0.04 CAVG 0.01 CMAX 0.06 337: LSD 0.03 -337: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.025 s ] +337: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.009 s ] 337: CMIN -0.04 CAVG 0.01 CMAX 0.07 337: LSD 0.05 337: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -9205,323 +9023,14 @@ 337: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha 337: Saving vf... 337: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-vf.mha -337: Load: 0.195502 -337: Run: 0.571638 -337: Save: 0.12656 -337: Total: 0.8937 +337: Load: 0.187522 +337: Run: 0.132344 +337: Save: 0.360573 +337: Total: 0.680439 337: Finished! 337: 337: STDERR: 337: Not an error -113/578 Test #337: plm-bsp-mi-c .......................... Passed 1.62 sec -test 403 - Start 403: plm-bsp-dcos-e - -403: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -403: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -403: Test timeout computed to be: 1500 -351: RETVAL: 0 -351: STDOUT: Loading fixed image [0]: gauss-1.mha -351: Loading moving image [0]: gauss-2.mha -351: Launching registration worker thread -351: Inside registration worker thread -351: Doing registration stage -351: [1] xf_in->m_type = 0, xf_out->m_type = 0 -351: RESAMPLE 1 1: (2 2 2), (2 2 2) -351: RESAMPLE 1 1: (2 2 2), (2 2 2) -351: volume_calc_grad complete. -351: bspline_xform_initialize -351: rdims = (2,2,2) -351: vox_per_rgn = (11,11,11) -351: cdims = (5 5 5) -351: Algorithm flavor = g -351: Threading = 0 -351: >> Checking JH allocation -351: BSPLINE PARMS -351: max_its = 5 -351: max_feval = 5 -351: BSPLINE XFORM HEADER -351: vox_per_rgn = 11 11 11 -351: roi_offset = 0 0 0 -351: roi_dim = 19 19 19 -351: img_dc = 1 0 0 0 1 0 0 0 1 -351: BST METRICS -351: MET 110100 MSE 1.000000 -351: Setting nmax, mmax = 375 21 -351: >>> START -351: This problem is unconstrained. -351: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.057 s ] -351: CMIN 0.00 CAVG 0.00 CMAX 0.00 -351: LSD 0.00 -351: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.032 s ] -351: CMIN -0.07 CAVG 0.01 CMAX 0.68 -351: LSD 1.00 -351: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.016 s ] -351: CMIN -0.35 CAVG 0.05 CMAX 3.40 -351: LSD 5.00 -351: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.031 s ] -351: CMIN -1.48 CAVG 0.20 CMAX 14.26 -351: LSD 21.00 -351: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.032 s ] -351: CMIN -1.74 CAVG 0.44 CMAX 32.50 -351: LSD 27.95 -351: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.036 s ] -351: CMIN -1.73 CAVG 0.34 CMAX 23.99 -351: LSD 13.11 -351: [2] xf_out->m_type = 9, xf_in->m_type = 0 -351: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -351: bspline_xform_initialize -351: rdims = (2,2,2) -351: vox_per_rgn = (22,22,22) -351: cdims = (5 5 5) -351: ** Registration worker thread finished. -351: Writing transformation ... -351: Warping... -351: Running: plm_warp_native -351: Converting input image... -351: Converting xform... -351: bspline_xform_initialize -351: rdims = (2,2,2) -351: vox_per_rgn = (22,22,22) -351: cdims = (5 5 5) -351: Creating output vf... -351: Creating output volume... -351: Running native warper... -351: bspline_warp complete. -351: Back convert to original type... -351: > Convert vf to itk -351: > Conversion complete. -351: plm_warp_native is complete. -351: Saving image... -351: Trying to write image to plm-bsp-openmp-img.mha -351: Saving vf... -351: Trying to write image to plm-bsp-openmp-vf.mha -351: Load: 0.158364 -351: Run: 0.232573 -351: Save: 0.120563 -351: Total: 0.5115 -351: Finished! -351: -351: STDERR: -351: Not an error -114/578 Test #351: plm-bsp-openmp ........................ Passed 1.51 sec -test 406 - Start 406: plm-bsp-dcos-f - -406: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -406: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -406: Test timeout computed to be: 1500 -400: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -400: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d.txt -400: EXPECTED_ERRNO is -403: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -403: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e.txt -403: EXPECTED_ERRNO is -358: RETVAL: 0 -358: STDOUT: Loading fixed image [0]: gauss-ushort-1.mha -358: Loading moving image [0]: gauss-ushort-2.mha -358: Launching registration worker thread -358: Inside registration worker thread -358: Doing registration stage -358: [1] xf_in->m_type = 0, xf_out->m_type = 0 -358: RESAMPLE 1 1: (2 2 2), (2 2 2) -358: RESAMPLE 1 1: (2 2 2), (2 2 2) -358: volume_calc_grad complete. -358: bspline_xform_initialize -358: rdims = (2,2,2) -358: vox_per_rgn = (11,11,11) -358: cdims = (5 5 5) -358: Algorithm flavor = h -358: Threading = 0 -358: >> Checking JH allocation -358: BSPLINE PARMS -358: max_its = 5 -358: max_feval = 5 -358: BSPLINE XFORM HEADER -358: vox_per_rgn = 11 11 11 -358: roi_offset = 0 0 0 -358: roi_dim = 19 19 19 -358: img_dc = 1 0 0 0 1 0 0 0 1 -358: BST METRICS -358: MET 110100 MSE 1.000000 -358: Setting nmax, mmax = 375 21 -358: >>> START -358: This problem is unconstrained. -358: [ 0, 0] MSE 18754.957 NV 6859 GM -2979.950 GN 852 [ 0.012 s ] -358: CMIN 0.00 CAVG 0.00 CMAX 0.00 -358: LSD 0.00 -358: [ 0, 1] MSE 17837.379 NV 6859 GM -2882.285 GN 824 [ 0.004 s ] -358: CMIN -0.07 CAVG 0.01 CMAX 0.68 -358: LSD 1.00 -358: [ 0, 2] MSE 14463.688 NV 6858 GM -2822.063 GN 824 [ 0.012 s ] -358: CMIN -0.35 CAVG 0.05 CMAX 3.40 -358: LSD 5.00 -358: [ 0, 3] MSE 3828.428 NV 6286 GM -1585.519 GN 459 [ 0.016 s ] -358: CMIN -1.48 CAVG 0.20 CMAX 14.26 -358: LSD 21.00 -358: [ 1, 4] MSE 3098.900 NV 5455 GM 1176.149 GN 399 [ 0.016 s ] -358: CMIN -1.74 CAVG 0.44 CMAX 32.50 -358: LSD 27.95 -358: [ 2, 5] MSE 281.899 NV 5851 GM 54.406 GN 43.4 [ 0.016 s ] -358: CMIN -1.73 CAVG 0.34 CMAX 23.98 -358: LSD 13.11 -358: [2] xf_out->m_type = 9, xf_in->m_type = 0 -358: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -358: bspline_xform_initialize -358: rdims = (2,2,2) -358: vox_per_rgn = (22,22,22) -358: cdims = (5 5 5) -358: ** Registration worker thread finished. -358: Writing transformation ... -358: Warping... -358: Running: plm_warp_native -358: Converting input image... -358: Converting xform... -358: bspline_xform_initialize -358: rdims = (2,2,2) -358: vox_per_rgn = (22,22,22) -358: cdims = (5 5 5) -358: Creating output vf... -358: Creating output volume... -358: Running native warper... -358: bspline_warp complete. -358: Back convert to original type... -358: > Convert vf to itk -358: > Conversion complete. -358: plm_warp_native is complete. -358: Saving image... -358: Trying to write image to plm-bsp-ushort-img.mha -358: Saving vf... -358: Trying to write image to plm-bsp-ushort-vf.mha -358: Load: 0.313523 -358: Run: 0.124155 -358: Save: 0.159235 -358: Total: 0.596913 -358: Finished! -358: -358: STDERR: -358: Not an error -115/578 Test #358: plm-bsp-ushort ........................ Passed 1.40 sec -test 409 - Start 409: plm-reg-multi-a - -409: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -409: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -409: Test timeout computed to be: 1500 -406: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -406: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f.txt -406: EXPECTED_ERRNO is -343: RETVAL: 0 -343: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -343: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha -343: Launching registration worker thread -343: Inside registration worker thread -343: Doing registration stage -343: [1] xf_in->m_type = 0, xf_out->m_type = 0 -343: RESAMPLE 1 1: (2 2 2), (2 2 2) -343: RESAMPLE 1 1: (2 2 2), (2 2 2) -343: volume_calc_grad complete. -343: bspline_xform_initialize -343: rdims = (5,5,5) -343: vox_per_rgn = (4,4,4) -343: cdims = (8 8 8) -343: Algorithm flavor = k -343: Threading = 0 -343: >> Checking JH allocation -343: >> Performing JH allocation -343: BSPLINE PARMS -343: max_its = 10 -343: max_feval = 10 -343: BSPLINE XFORM HEADER -343: vox_per_rgn = 4 4 4 -343: roi_offset = 0 0 0 -343: roi_dim = 19 19 19 -343: img_dc = 1 0 0 0 1 0 0 0 1 -343: BST METRICS -343: MET 110100 MI 1.000000 -343: >> Performing JH initialization -343: Setting nmax, mmax = 1536 41 -343: >>> START -343: This problem is unconstrained. -343: [ 0, 0] MI -0.4031359 NV 6859 GM 0.148 GN 0.02 [ 0.044 s ] -343: CMIN 0.01 CAVG 0.01 CMAX 0.01 -343: LSD 0.00 -343: [ 0, 1] MI -0.3911095 NV 6859 GM -0.174 GN 0.0182 [ 0.028 s ] -343: CMIN -0.26 CAVG 0.01 CMAX 0.05 -343: LSD 1.00 -343: [ 0, 2] MI -0.4031149 NV 6859 GM -0.183 GN 0.0211 [ 0.024 s ] -343: CMIN -0.04 CAVG 0.01 CMAX 0.02 -343: LSD 0.18 -343: [ 0, 3] MI -0.4046610 NV 6859 GM -0.025 GN 0.0104 [ 0.048 s ] -343: CMIN -0.01 CAVG 0.01 CMAX 0.01 -343: LSD 0.09 -343: [ 1, 4] MI -0.4047489 NV 6859 GM 0.114 GN 0.0175 [ 0.048 s ] -343: CMIN -0.01 CAVG 0.01 CMAX 0.02 -343: LSD 0.02 -343: [ 2, 5] MI -0.4048453 NV 6859 GM -0.028 GN 0.0107 [ 0.047 s ] -343: CMIN -0.01 CAVG 0.01 CMAX 0.02 -343: LSD 0.02 -343: [ 3, 6] MI -0.4049332 NV 6859 GM -0.040 GN 0.011 [ 0.036 s ] -343: CMIN -0.01 CAVG 0.01 CMAX 0.02 -343: LSD 0.02 -343: [ 4, 7] MI -0.4051392 NV 6859 GM 0.031 GN 0.0124 [ 0.028 s ] -343: CMIN -0.03 CAVG 0.01 CMAX 0.04 -343: LSD 0.14 -343: [ 5, 8] MI -0.4052844 NV 6859 GM -0.024 GN 0.00604 [ 0.044 s ] -343: CMIN -0.03 CAVG 0.01 CMAX 0.05 -343: LSD 0.04 -343: [ 6, 9] MI -0.4053446 NV 6859 GM -0.069 GN 0.00892 [ 0.069 s ] -343: CMIN -0.04 CAVG 0.01 CMAX 0.06 -343: LSD 0.03 -343: [ 7, 10] MI -0.4054493 NV 6859 GM -0.111 GN 0.0121 [ 0.024 s ] -343: CMIN -0.04 CAVG 0.01 CMAX 0.07 -343: LSD 0.05 -343: [2] xf_out->m_type = 9, xf_in->m_type = 0 -343: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -343: bspline_xform_initialize -343: rdims = (5,5,5) -343: vox_per_rgn = (8,8,8) -343: cdims = (8 8 8) -343: ** Registration worker thread finished. -343: Writing transformation ... -343: Warping... -343: Running: plm_warp_native -343: Converting input image... -343: Converting xform... -343: bspline_xform_initialize -343: rdims = (5,5,5) -343: vox_per_rgn = (8,8,8) -343: cdims = (8 8 8) -343: Creating output vf... -343: Creating output volume... -343: Running native warper... -343: bspline_warp complete. -343: Back convert to original type... -343: > Convert vf to itk -343: > Conversion complete. -343: plm_warp_native is complete. -343: Saving image... -343: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha -343: Saving vf... -343: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-vf.mha -343: Load: 0.218159 -343: Run: 0.507771 -343: Save: 0.134475 -343: Total: 0.860405 -343: Finished! -343: -343: STDERR: -343: Not an error -116/578 Test #343: plm-bsp-mi-k .......................... Passed 1.87 sec -test 412 - Start 412: plm-reg-multi-b - -412: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -412: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -412: Test timeout computed to be: 1500 -409: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -409: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a.txt -409: EXPECTED_ERRNO is 361: RETVAL: 0 361: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha 361: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-2.mha @@ -9552,22 +9061,22 @@ 361: Setting nmax, mmax = 375 21 361: >>> START 361: This problem is unconstrained. -361: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.036 s ] +361: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.003 s ] 361: CMIN 0.00 CAVG 0.00 CMAX 0.00 361: LSD 0.00 361: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.004 s ] 361: CMIN -0.07 CAVG 0.01 CMAX 0.68 361: LSD 1.00 -361: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.004 s ] +361: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.003 s ] 361: CMIN -0.35 CAVG 0.05 CMAX 3.40 361: LSD 5.00 -361: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.016 s ] +361: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.003 s ] 361: CMIN -1.48 CAVG 0.20 CMAX 14.26 361: LSD 21.00 -361: [ 1, 4] MSE 3098.536 NV 5455 GM 1176.092 GN 399 [ 0.019 s ] +361: [ 1, 4] MSE 3098.536 NV 5455 GM 1176.092 GN 399 [ 0.003 s ] 361: CMIN -1.74 CAVG 0.44 CMAX 32.50 361: LSD 27.95 -361: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.004 s ] +361: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.003 s ] 361: CMIN -1.73 CAVG 0.34 CMAX 23.99 361: LSD 13.11 361: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -9598,17 +9107,481 @@ 361: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha 361: Saving vf... 361: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-vf.mha -361: Load: 0.280068 -361: Run: 0.22386 -361: Save: 0.166971 -361: Total: 0.670899 +361: Load: 0.059998 +361: Run: 0.0284328 +361: Save: 0.552605 +361: Total: 0.641036 361: Finished! 361: 361: STDERR: 361: Not an error -412: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -412: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b.txt -412: EXPECTED_ERRNO is +351: RETVAL: 0 +351: STDOUT: Loading fixed image [0]: gauss-1.mha +351: Loading moving image [0]: gauss-2.mha +351: Launching registration worker thread +351: Inside registration worker thread +351: Doing registration stage +351: [1] xf_in->m_type = 0, xf_out->m_type = 0 +351: RESAMPLE 1 1: (2 2 2), (2 2 2) +351: RESAMPLE 1 1: (2 2 2), (2 2 2) +351: volume_calc_grad complete. +351: bspline_xform_initialize +351: rdims = (2,2,2) +351: vox_per_rgn = (11,11,11) +351: cdims = (5 5 5) +351: Algorithm flavor = g +351: Threading = 0 +351: >> Checking JH allocation +351: BSPLINE PARMS +351: max_its = 5 +351: max_feval = 5 +351: BSPLINE XFORM HEADER +351: vox_per_rgn = 11 11 11 +351: roi_offset = 0 0 0 +351: roi_dim = 19 19 19 +351: img_dc = 1 0 0 0 1 0 0 0 1 +351: BST METRICS +351: MET 110100 MSE 1.000000 +351: Setting nmax, mmax = 375 21 +351: >>> START +351: This problem is unconstrained. +351: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.078 s ] +351: CMIN 0.00 CAVG 0.00 CMAX 0.00 +351: LSD 0.00 +351: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.045 s ] +351: CMIN -0.07 CAVG 0.01 CMAX 0.68 +351: LSD 1.00 +351: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.035 s ] +351: CMIN -0.35 CAVG 0.05 CMAX 3.40 +351: LSD 5.00 +351: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.020 s ] +351: CMIN -1.48 CAVG 0.20 CMAX 14.26 +351: LSD 21.00 +351: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.016 s ] +351: CMIN -1.74 CAVG 0.44 CMAX 32.50 +351: LSD 27.95 +351: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.042 s ] +351: CMIN -1.73 CAVG 0.34 CMAX 23.99 +351: LSD 13.11 +351: [2] xf_out->m_type = 9, xf_in->m_type = 0 +351: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +351: bspline_xform_initialize +351: rdims = (2,2,2) +351: vox_per_rgn = (22,22,22) +351: cdims = (5 5 5) +351: ** Registration worker thread finished. +351: Writing transformation ... +351: Warping... +351: Running: plm_warp_native +351: Converting input image... +351: Converting xform... +351: bspline_xform_initialize +351: rdims = (2,2,2) +351: vox_per_rgn = (22,22,22) +351: cdims = (5 5 5) +351: Creating output vf... +351: Creating output volume... +351: Running native warper... +351: bspline_warp complete. +351: Back convert to original type... +351: > Convert vf to itk +351: > Conversion complete. +351: plm_warp_native is complete. +351: Saving image... +351: Trying to write image to plm-bsp-openmp-img.mha +351: Saving vf... +351: Trying to write image to plm-bsp-openmp-vf.mha +351: Load: 0.0816882 +351: Run: 0.257801 +351: Save: 0.320125 +351: Total: 0.659614 +351: Finished! +351: +351: STDERR: +351: Not an error +320: RETVAL: 0 +320: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +320: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +320: Launching registration worker thread +320: Inside registration worker thread +320: Doing registration stage +320: [1] xf_in->m_type = 0, xf_out->m_type = 0 +320: RESAMPLE 1 1: (2 2 2), (2 2 2) +320: RESAMPLE 1 1: (2 2 2), (2 2 2) +320: volume_calc_grad complete. +320: bspline_xform_initialize +320: rdims = (2,2,2) +320: vox_per_rgn = (11,11,11) +320: cdims = (5 5 5) +320: Algorithm flavor = i +320: Threading = 0 +320: >> Checking JH allocation +320: BSPLINE PARMS +320: max_its = 5 +320: max_feval = 5 +320: BSPLINE XFORM HEADER +320: vox_per_rgn = 11 11 11 +320: roi_offset = 0 0 0 +320: roi_dim = 19 19 19 +320: img_dc = 1 0 0 0 1 0 0 0 1 +320: BST METRICS +320: MET 110100 MSE 1.000000 +320: Setting nmax, mmax = 375 21 +320: >>> START +320: This problem is unconstrained. +320: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.032 s ] +320: CMIN 0.00 CAVG 0.00 CMAX 0.00 +320: LSD 0.00 +320: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.069 s ] +320: CMIN -0.07 CAVG 0.01 CMAX 0.68 +320: LSD 1.00 +320: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.087 s ] +320: CMIN -0.35 CAVG 0.05 CMAX 3.40 +320: LSD 5.00 +320: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.060 s ] +320: CMIN -1.48 CAVG 0.20 CMAX 14.26 +320: LSD 21.00 +320: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.029 s ] +320: CMIN -1.74 CAVG 0.44 CMAX 32.50 +320: LSD 27.95 +320: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.012 s ] +320: CMIN -1.73 CAVG 0.34 CMAX 23.99 +320: LSD 13.11 +320: [2] xf_out->m_type = 9, xf_in->m_type = 0 +320: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +320: bspline_xform_initialize +320: rdims = (2,2,2) +320: vox_per_rgn = (22,22,22) +320: cdims = (5 5 5) +320: ** Registration worker thread finished. +320: Writing transformation ... +320: Warping... +320: Running: plm_warp_native +320: Converting input image... +320: Converting xform... +320: bspline_xform_initialize +320: rdims = (2,2,2) +320: vox_per_rgn = (22,22,22) +320: cdims = (5 5 5) +320: Creating output vf... +320: Creating output volume... +320: Running native warper... +320: bspline_warp complete. +320: Back convert to original type... +320: > Convert vf to itk +320: > Conversion complete. +320: plm_warp_native is complete. +320: Saving image... +320: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha +320: Saving vf... +320: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-vf.mha +320: Load: 0.0670009 +320: Run: 0.329071 +320: Save: 0.363627 +320: Total: 0.759699 +320: Finished! +320: +320: STDERR: +320: Not an error +385: RETVAL: 0 +385: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha +385: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha +385: Launching registration worker thread +385: Inside registration worker thread +385: Doing registration stage +385: [1] xf_in->m_type = 0, xf_out->m_type = 0 +385: RESAMPLE 1 1: (2 2 2), (2 2 2) +385: RESAMPLE 1 1: (2 2 2), (2 2 2) +385: volume_calc_grad complete. +385: bspline_xform_initialize +385: Warning: vox_per_rgn was less than 4. +385: Warning: vox_per_rgn was less than 4. +385: Warning: vox_per_rgn was less than 4. +385: rdims = (5,5,5) +385: vox_per_rgn = (4,4,4) +385: cdims = (8 8 8) +385: Algorithm flavor = h +385: Threading = 0 +385: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 +385: >> Checking JH allocation +385: Computing landmark grid coordinates +385: image dc=-1 0 0 0 -1 0 0 0 1 +385: image or=250 250 -236.842 +385: image dm=19 19 19 +385: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) +385: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) +385: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) +385: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) +385: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) +385: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) +385: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) +385: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) +385: BSPLINE PARMS +385: max_its = 5 +385: max_feval = 5 +385: BSPLINE XFORM HEADER +385: vox_per_rgn = 4 4 4 +385: roi_offset = 0 0 0 +385: roi_dim = 19 19 19 +385: img_dc = -1 0 0 0 -1 0 0 0 1 +385: BST METRICS +385: MET 110100 MSE 1.000000 +385: Setting nmax, mmax = 1536 41 +385: >>> START +385: This problem is unconstrained. +385: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.004 s ] +385: MSE 1339.480 LM 446.242 +385: CMIN 0.00 CAVG 0.00 CMAX 0.00 +385: LSD 0.00 +385: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.004 s ] +385: MSE 1303.402 LM 437.384 +385: CMIN -0.03 CAVG 0.00 CMAX 0.57 +385: LSD 1.00 +385: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.004 s ] +385: MSE 1164.662 LM 402.938 +385: CMIN -0.17 CAVG 0.01 CMAX 2.86 +385: LSD 5.00 +385: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.004 s ] +385: MSE 698.326 LM 280.914 +385: CMIN -0.71 CAVG 0.05 CMAX 12.03 +385: LSD 21.00 +385: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.004 s ] +385: MSE 81.402 LM 37.433 +385: CMIN -1.76 CAVG 0.19 CMAX 39.56 +385: LSD 55.80 +385: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.004 s ] +385: MSE 47.343 LM 22.393 +385: CMIN -3.07 CAVG 0.19 CMAX 44.32 +385: LSD 10.82 +385: [2] xf_out->m_type = 9, xf_in->m_type = 0 +385: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +385: bspline_xform_initialize +385: rdims = (5,5,5) +385: vox_per_rgn = (8,8,8) +385: cdims = (8 8 8) +385: ** Registration worker thread finished. +385: Writing transformation ... +385: Warping... +385: Running: plm_warp_native +385: Converting input image... +385: Converting xform... +385: bspline_xform_initialize +385: rdims = (5,5,5) +385: vox_per_rgn = (8,8,8) +385: cdims = (8 8 8) +385: Creating output vf... +385: Creating output volume... +385: Running native warper... +385: bspline_warp complete. +385: Back convert to original type... +385: > Convert vf to itk +385: > Conversion complete. +385: plm_warp_native is complete. +385: Saving image... +385: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha +385: Saving vf... +385: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-vf.mha +385: Load: 0.108209 +385: Run: 0.0464189 +385: Save: 0.226004 +385: Total: 0.380632 +385: Finished! +385: +385: STDERR: +385: Not an error +293: RETVAL: 0 +293: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2s.mha +293: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +293: Launching registration worker thread +293: Inside registration worker thread +293: Doing registration stage +293: [1] xf_in->m_type = 0, xf_out->m_type = 0 +293: Fixed image for this stage: +293: Dim = 19 19 19 +293: Origin = -236.842 -236.842 -236.842 +293: Spacing = 26.316 26.316 26.316 +293: Direction Cosines = +293: 1 0 0 +293: 0 1 0 +293: 0 0 1 +293: Moving image for this stage: +293: Dim = 19 19 19 +293: Origin = -236.842 -236.842 -236.842 +293: Spacing = 26.3158 26.3158 26.3158 +293: Direction Cosines = +293: 1 0 0 +293: 0 1 0 +293: 0 0 1 +293: Initial Parameters = [0, 0, 0, 0, 0, 0, 1] +293: Starting ITK registration +293: StartEvent: [] +293: MSE [ 1, 0,-1.00] 50982.091 [0, 0, 0, 0, 0, 0, 1] * +293: MSE [ 2, 1,-1.00] 43798.343 [0, 0, 0, -0.4593838948324258, 0.47067772433152183, -1.9737006269275084, 0.8764184123566656] -7183.75 * +293: MSE [ 3, 2,-1.00] 39030.004 [0, 0, 0, -0.9555136001504676, 0.27777212751612945, -2.9263769176831524, 0.7999915714784266] -4768.34 * +293: MSE [ 4, 3,-1.00] 39030.004 [0, 0, 0, -0.9555136001504676, 0.27777212751612945, -2.9263769176831524, 0.7999915714784266] 0.00 +293: MSE [ 5, 4,-1.00] 36227.691 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] -2802.31 * +293: MSE [ 6, 5,-1.00] 36227.691 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] 0.00 (tol) +293: EndEvent: [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] +293: OnePlusOneEvolutionaryOptimizer: Maximum number of iterations (1) exceeded. +293: ITK registration complete +293: [2] xf_out->m_type = 4, xf_in->m_type = 0 +293: Warping... +293: plm_warp_itk: xform_to_itk_vf +293: plm_warp_itk: convert_to_itk +293: plm_warp_itk: warping... +293: Saving image... +293: Trying to write image to plm-reg-itk-similarity-intermediate-img.mha +293: Doing registration stage +293: [1] xf_in->m_type = 4, xf_out->m_type = 0 +293: Fixed image for this stage: +293: Dim = 38 38 38 +293: Origin = -243.421 -243.421 -243.421 +293: Spacing = 13.158 13.158 13.158 +293: Direction Cosines = +293: 1 0 0 +293: 0 1 0 +293: 0 0 1 +293: Moving image for this stage: +293: Dim = 38 38 38 +293: Origin = -243.421 -243.421 -243.421 +293: Spacing = 13.1579 13.1579 13.1579 +293: Direction Cosines = +293: 1 0 0 +293: 0 1 0 +293: 0 0 1 +293: Initial Parameters = [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] +293: Starting ITK registration +293: StartEvent: [] +293: MSE [ 1, 0,-1.00] 53402.170 [0, 0, 0, -1.5343609038060144, -0.7504423268028503, -2.552411232579159, 0.7582084073369945] * +293: MSE [ 2, 1,-1.00] 40041.651 [0, 0, 0, -1.9937447986384402, -0.27976460247132845, -4.526111859506667, 0.6346268196936601] -13360.52 * +293: MSE [ 3, 2,-1.00] 32234.274 [0, 0, 0, -2.4898745039564822, -0.4726701992867208, -5.478788150262311, 0.558199978815421] -7807.38 * +293: MSE [ 4, 3,-1.00] 32234.274 [0, 0, 0, -2.4898745039564822, -0.4726701992867208, -5.478788150262311, 0.558199978815421] 0.00 +293: MSE [ 5, 4,-1.00] 31471.432 [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] -762.84 * +293: MSE [ 6, 5,-1.00] 31471.432 [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] 0.00 (tol) +293: EndEvent: [0, 0, 0, -3.068721807612029, -1.5008846536057006, -5.104822465158318, 0.5164168146739889] +293: OnePlusOneEvolutionaryOptimizer: Maximum number of iterations (1) exceeded. +293: ITK registration complete +293: [2] xf_out->m_type = 4, xf_in->m_type = 4 +293: Warping... +293: plm_warp_itk: xform_to_itk_vf +293: plm_warp_itk: convert_to_itk +293: plm_warp_itk: warping... +293: Saving image... +293: Trying to write image to plm-reg-itk-similarity-img.mha +293: ** Registration worker thread finished. +293: Writing transformation ... +293: Warping... +293: plm_warp_itk: xform_to_itk_vf +293: plm_warp_itk: convert_to_itk +293: plm_warp_itk: warping... +293: Saving image... +293: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-img.mha +293: Saving vf... +293: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-a-vf.mha +293: Load: 0.060097 +293: Run: 0.413401 +293: Save: 0.211779 +293: Total: 0.685277 +293: Finished! +293: +293: STDERR: +293: Not an error +340: RETVAL: 0 +340: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +340: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-3.mha +340: Launching registration worker thread +340: Inside registration worker thread +340: Doing registration stage +340: [1] xf_in->m_type = 0, xf_out->m_type = 0 +340: RESAMPLE 1 1: (1 1 1), (1 1 1) +340: RESAMPLE 1 1: (1 1 1), (1 1 1) +340: volume_calc_grad complete. +340: bspline_xform_initialize +340: rdims = (3,3,3) +340: vox_per_rgn = (15,15,15) +340: cdims = (6 6 6) +340: Algorithm flavor = c +340: Threading = 0 +340: >> Checking JH allocation +340: >> Performing JH allocation +340: BSPLINE PARMS +340: max_its = 10 +340: max_feval = 10 +340: BSPLINE XFORM HEADER +340: vox_per_rgn = 15 15 15 +340: roi_offset = 0 0 0 +340: roi_dim = 38 38 38 +340: img_dc = 1 0 0 0 1 0 0 0 1 +340: BST METRICS +340: MET 110100 MI 1.000000 +340: >> Performing JH initialization +340: Using alpha_0 (1.000000) +340: [ 0, 0] MI -0.3659457 NV 54872 GM -0.007 GN 0.00788 [ 0.074 s ] +340: CMIN 0.01 CAVG 0.01 CMAX 0.01 +340: [ 0, 1] MI -0.3699214 NV 54872 GM -0.056 GN 0.00867 [ 0.078 s ] +340: CMIN -0.21 CAVG 0.01 CMAX 0.30 +340: GR 0.50 NEW_A 1.00 ACCEPT? 1 +340: [ 1, 2] MI -0.3777946 NV 54872 GM -0.049 GN 0.00903 [ 0.078 s ] +340: CMIN -0.23 CAVG 0.02 CMAX 0.69 +340: GR 0.91 NEW_A 3.00 ACCEPT? 1 +340: [ 2, 3] MI -0.4137608 NV 54753 GM -0.063 GN 0.017 [ 0.072 s ] +340: CMIN -0.35 CAVG 0.05 CMAX 2.09 +340: GR 3.98 NEW_A 9.00 ACCEPT? 1 +340: [ 3, 4] MI -0.5521525 NV 53587 GM -0.081 GN 0.017 [ 0.068 s ] +340: CMIN -0.97 CAVG 0.10 CMAX 7.08 +340: GR 8.16 NEW_A 27.00 ACCEPT? 1 +340: [ 4, 5] MI -1.2166027 NV 49761 GM -0.031 GN 0.0276 [ 0.068 s ] +340: CMIN -2.22 CAVG 0.30 CMAX 20.76 +340: GR 38.97 NEW_A 81.00 ACCEPT? 1 +340: [ 5, 6] MI -0.4035923 NV 36457 GM -0.029 GN 0.0114 [ 0.057 s ] +340: CMIN -26.58 CAVG 0.44 CMAX 33.14 +340: GR -29.50 NEW_A 40.50 ACCEPT? 0 +340: [ 5, 7] MI -0.7946788 NV 43303 GM -0.068 GN 0.0215 [ 0.049 s ] +340: CMIN -14.21 CAVG 0.37 CMAX 26.12 +340: GR -15.31 NEW_A 20.25 ACCEPT? 0 +340: [ 5, 8] MI -1.1523657 NV 46825 GM -0.160 GN 0.031 [ 0.063 s ] +340: CMIN -8.02 CAVG 0.33 CMAX 23.44 +340: GR -2.33 NEW_A 10.12 ACCEPT? 0 +340: [ 5, 9] MI -1.3108922 NV 48385 GM -0.176 GN 0.0266 [ 0.072 s ] +340: CMIN -4.93 CAVG 0.31 CMAX 22.10 +340: GR 3.42 NEW_A 30.38 ACCEPT? 1 +340: [ 6, 10] MI -0.7927921 NV 46839 GM 0.149 GN 0.0234 [ 0.072 s ] +340: CMIN -2.23 CAVG 0.62 CMAX 17.80 +340: GR -19.50 NEW_A 15.19 ACCEPT? 0 +340: [2] xf_out->m_type = 9, xf_in->m_type = 0 +340: ** Registration worker thread finished. +340: Writing transformation ... +340: Warping... +340: Running: plm_warp_native +340: Converting input image... +340: Converting xform... +340: bspline_xform_initialize +340: rdims = (3,3,3) +340: vox_per_rgn = (15,15,15) +340: cdims = (6 6 6) +340: Creating output vf... +340: Creating output volume... +340: Running native warper... +340: bspline_warp complete. +340: Back convert to original type... +340: > Convert vf to itk +340: > Conversion complete. +340: plm_warp_native is complete. +340: Saving image... +340: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha +340: Saving vf... +340: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha +340: Load: 0.08831 +340: Run: 0.754303 +340: Save: 0.385304 +340: Total: 1.22792 +340: Finished! +340: +340: STDERR: +340: Not an error +452: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +452: PARMS is compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha +452: EXPECTED_ERRNO is 379: RETVAL: 0 379: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha 379: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha @@ -9657,27 +9630,27 @@ 379: Setting nmax, mmax = 1536 41 379: >>> START 379: This problem is unconstrained. -379: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.012 s ] +379: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.003 s ] 379: MSE 1339.480 LM 446.242 379: CMIN 0.00 CAVG 0.00 CMAX 0.00 379: LSD 0.00 -379: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.021 s ] +379: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.004 s ] 379: MSE 1303.402 LM 437.384 379: CMIN -0.03 CAVG 0.00 CMAX 0.57 379: LSD 1.00 -379: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.009 s ] +379: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.004 s ] 379: MSE 1164.662 LM 402.938 379: CMIN -0.17 CAVG 0.01 CMAX 2.86 379: LSD 5.00 -379: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.012 s ] +379: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.004 s ] 379: MSE 698.326 LM 280.914 379: CMIN -0.71 CAVG 0.05 CMAX 12.03 379: LSD 21.00 -379: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.017 s ] +379: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.004 s ] 379: MSE 81.402 LM 37.433 379: CMIN -1.76 CAVG 0.19 CMAX 39.56 379: LSD 55.80 -379: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.021 s ] +379: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.004 s ] 379: MSE 47.343 LM 22.393 379: CMIN -3.07 CAVG 0.19 CMAX 44.32 379: LSD 10.82 @@ -9711,143 +9684,244 @@ 379: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-warped.fcsv 379: Saving vf... 379: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-vf.mha -379: Load: 0.255574 -379: Run: 0.155613 -379: Save: 0.21039 -379: Total: 0.621577 +379: Load: 0.0882931 +379: Run: 0.0279629 +379: Save: 0.2896 +379: Total: 0.405856 379: Finished! 379: 379: STDERR: 379: Not an error -117/578 Test #361: plm-bsp-double ........................ Passed 1.66 sec -118/578 Test #379: plm-bsp-landmark-b .................... Passed 1.36 sec -test 415 - Start 415: plm-reg-dv-itk-translation +456: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +456: PARMS is resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2 +456: EXPECTED_ERRNO is +459: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +459: PARMS is resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha +459: EXPECTED_ERRNO is +106/578 Test #340: plm-bsp-mi-c-2 ........................ Passed 1.55 sec +107/578 Test #293: plm-reg-itk-similarity ................ Passed 1.14 sec +108/578 Test #320: plm-bsp-mse-i ......................... Passed 1.10 sec +109/578 Test #323: plm-bsp-mse-k ......................... Passed 1.10 sec +110/578 Test #337: plm-bsp-mi-c .......................... Passed 1.17 sec +111/578 Test #351: plm-bsp-openmp ........................ Passed 1.14 sec +112/578 Test #361: plm-bsp-double ........................ Passed 1.12 sec +113/578 Test #385: plm-bsp-landmark-d .................... Passed 0.92 sec +test 462 + Start 462: plm-resample-c -415: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -415: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -415: Test timeout computed to be: 1500 -test 424 - Start 424: plm-reg-process-a +462: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +462: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +462: Test timeout computed to be: 1500 +test 474 + Start 474: plm-thumbnail-a -424: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -424: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -424: Test timeout computed to be: 1500 -22: RETVAL: 0 -22: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha -22: Doing extraction -22: Keyholizing structure 0. -22: Keyholizing structure 1. -22: Keyholizing structure 2. -22: Write: DoseGridScaling = 0.000000 -22: -22: STDERR: -22: Not an error -119/578 Test #22: lung-2 ................................ Passed 5.81 sec -test 427 - Start 427: plm-reg-trans-a +474: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +474: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +474: Test timeout computed to be: 1500 +test 477 + Start 477: plm-thumbnail-b -427: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -427: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -427: Test timeout computed to be: 1500 -415: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -415: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation.txt -415: EXPECTED_ERRNO is -424: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -424: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.txt -424: EXPECTED_ERRNO is -427: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -427: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.txt -427: EXPECTED_ERRNO is -369: RETVAL: 0 -369: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -369: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha -369: Launching registration worker thread -369: Inside registration worker thread -369: Doing registration stage -369: [1] xf_in->m_type = 0, xf_out->m_type = 0 -369: RESAMPLE 1 1: (1 1 1), (1 1 1) -369: RESAMPLE 1 1: (1 1 1), (1 1 1) -369: volume_calc_grad complete. -369: bspline_xform_initialize -369: Warning: vox_per_rgn was less than 4. -369: Warning: vox_per_rgn was less than 4. -369: Warning: vox_per_rgn was less than 4. -369: rdims = (10,10,10) -369: vox_per_rgn = (4,4,4) -369: cdims = (13 13 13) -369: Algorithm flavor = g -369: Threading = 0 -369: >> Checking JH allocation -369: BSPLINE PARMS -369: max_its = 5 -369: max_feval = 5 -369: BSPLINE XFORM HEADER -369: vox_per_rgn = 4 4 4 -369: roi_offset = 0 0 0 -369: roi_dim = 38 38 38 -369: img_dc = 1 0 0 0 1 0 0 0 1 -369: BST METRICS -369: MET 110100 MSE 1.000000 -369: Setting nmax, mmax = 6591 83 -369: >>> START -369: This problem is unconstrained. -369: [ 0, 0] MSE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.127 s ] -369: CMIN 0.00 CAVG 0.00 CMAX 0.00 -369: LSD 0.00 -369: [ 0, 1] MSE 5484.124 NV 54872 GM 0.045 GN 27.8 [ 0.058 s ] -369: CMIN -0.16 CAVG -0.00 CMAX 0.22 -369: LSD 1.00 -369: [ 0, 2] MSE 5266.236 NV 54872 GM 0.224 GN 26.4 [ 0.026 s ] -369: CMIN -0.81 CAVG 0.00 CMAX 1.12 -369: LSD 5.00 -369: [ 0, 3] MSE 4484.536 NV 54872 GM 0.928 GN 20.9 [ 0.042 s ] -369: CMIN -3.39 CAVG 0.00 CMAX 4.70 -369: LSD 21.00 -369: [ 1, 4] MSE 2493.238 NV 54872 GM 0.677 GN 15.1 [ 0.040 s ] -369: CMIN -13.49 CAVG -0.00 CMAX 18.05 -369: LSD 60.54 -369: [ 2, 5] MSE 4765.919 NV 54872 GM 81.679 GN 34.3 [ 0.038 s ] -369: CMIN -43.65 CAVG -0.01 CMAX 57.84 -369: LSD 218.24 -369: [2] xf_out->m_type = 9, xf_in->m_type = 0 -369: ** Registration worker thread finished. -369: Writing transformation ... -369: Warping... -369: Running: plm_warp_native -369: Converting input image... -369: Converting xform... -369: bspline_xform_initialize -369: rdims = (10,10,10) -369: vox_per_rgn = (4,4,4) -369: cdims = (13 13 13) -369: Creating output vf... -369: Creating output volume... -369: Running native warper... -369: bspline_warp complete. -369: Back convert to original type... -369: > Convert vf to itk -369: > Conversion complete. -369: plm_warp_native is complete. -369: Saving image... -369: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-img.mha -369: Saving vf... -369: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha -369: Load: 0.256102 -369: Run: 0.359329 -369: Save: 0.154812 -369: Total: 0.770243 -369: Finished! -369: -369: STDERR: -369: Not an error -120/578 Test #369: plm-bsp-regularize-none ............... Passed 1.73 sec -test 430 - Start 430: plm-reg-trans-b +477: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +477: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +477: Test timeout computed to be: 1500 +test 480 + Start 480: plm-thumbnail-c -430: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -430: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -430: Test timeout computed to be: 1500 +480: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +480: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +480: Test timeout computed to be: 1500 +test 483 + Start 483: plm-intersect + +483: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=intersect;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +483: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +483: Test timeout computed to be: 1500 +test 486 + Start 486: plm-union + +486: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=union;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +486: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +486: Test timeout computed to be: 1500 +test 489 + Start 489: plm-threshold-a + +489: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha;--above;-888" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +489: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +489: Test timeout computed to be: 1500 +test 492 + Start 492: plm-threshold-b + +492: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +492: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +492: Test timeout computed to be: 1500 +114/578 Test #379: plm-bsp-landmark-b .................... Passed 1.08 sec +465: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +465: PARMS is scale;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha +465: EXPECTED_ERRNO is +314: RETVAL: 0 +314: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +314: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +314: Launching registration worker thread +314: Inside registration worker thread +314: Doing registration stage +314: [1] xf_in->m_type = 0, xf_out->m_type = 0 +314: RESAMPLE 1 1: (2 2 2), (2 2 2) +314: RESAMPLE 1 1: (2 2 2), (2 2 2) +314: volume_calc_grad complete. +314: bspline_xform_initialize +314: rdims = (2,2,2) +314: vox_per_rgn = (11,11,11) +314: cdims = (5 5 5) +314: Algorithm flavor = g +314: Threading = 0 +314: >> Checking JH allocation +314: BSPLINE PARMS +314: max_its = 5 +314: max_feval = 5 +314: BSPLINE XFORM HEADER +314: vox_per_rgn = 11 11 11 +314: roi_offset = 0 0 0 +314: roi_dim = 19 19 19 +314: img_dc = 1 0 0 0 1 0 0 0 1 +314: BST METRICS +314: MET 110100 MSE 1.000000 +314: Setting nmax, mmax = 375 21 +314: >>> START +314: This problem is unconstrained. +314: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.040 s ] +314: CMIN 0.00 CAVG 0.00 CMAX 0.00 +314: LSD 0.00 +314: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.056 s ] +314: CMIN -0.07 CAVG 0.01 CMAX 0.68 +314: LSD 1.00 +314: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.045 s ] +314: CMIN -0.35 CAVG 0.05 CMAX 3.40 +314: LSD 5.00 +314: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.035 s ] +314: CMIN -1.48 CAVG 0.20 CMAX 14.26 +314: LSD 21.00 +314: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.030 s ] +314: CMIN -1.74 CAVG 0.44 CMAX 32.50 +314: LSD 27.95 +314: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.049 s ] +314: CMIN -1.73 CAVG 0.34 CMAX 23.99 +314: LSD 13.11 +314: [2] xf_out->m_type = 9, xf_in->m_type = 0 +314: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +314: bspline_xform_initialize +314: rdims = (2,2,2) +314: vox_per_rgn = (22,22,22) +314: cdims = (5 5 5) +314: ** Registration worker thread finished. +314: Writing transformation ... +314: Warping... +314: Running: plm_warp_native +314: Converting input image... +314: Converting xform... +314: bspline_xform_initialize +314: rdims = (2,2,2) +314: vox_per_rgn = (22,22,22) +314: cdims = (5 5 5) +314: Creating output vf... +314: Creating output volume... +314: Running native warper... +314: bspline_warp complete. +314: Back convert to original type... +314: > Convert vf to itk +314: > Conversion complete. +314: plm_warp_native is complete. +314: Saving image... +314: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha +314: Saving vf... +314: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-vf.mha +314: Load: 0.0596991 +314: Run: 0.267034 +314: Save: 0.337534 +314: Total: 0.664267 +314: Finished! +314: +314: STDERR: +314: Not an error +115/578 Test #314: plm-bsp-mse-g ......................... Passed 1.27 sec +409: RETVAL: 0 +409: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +409: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha +409: Launching registration worker thread +409: Inside registration worker thread +409: Doing registration stage +409: [1] xf_in->m_type = 0, xf_out->m_type = 0 +409: Fixed image for this stage: +409: Dim = 19 19 19 +409: Origin = -236.842 -236.842 -236.842 +409: Spacing = 26.3158 26.3158 26.3158 +409: Direction Cosines = +409: 1 0 0 +409: 0 1 0 +409: 0 0 1 +409: Moving image for this stage: +409: Dim = 19 19 19 +409: Origin = -236.842 -236.842 -236.842 +409: Spacing = 26.3158 26.3158 26.3158 +409: Direction Cosines = +409: 1 0 0 +409: 0 1 0 +409: 0 0 1 +409: Initial Parameters = [0, 0, 0, 0, 0, 0] +409: Starting ITK registration +409: StartEvent: [0, 0, 0, 0, 0, 0] +409: MSE [ 0, 0,10.00] 2961.438 [4.3519801041945676e-20, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999998, -4.351980104194578e-15, -3.829742491691229e-15] +409: :: [0, 0, 0, 0, 0, 0] +409: * +409: MSE [ 1, 1,10.00] 2086.091 [-2.2464214183992567e-18, -3.3499860475683525e-7, 3.3499860572587504e-7, -19.999999999999872, -9.942357120862573e-7, -9.942357114252402e-7] -875.35 +409: :: [4.3519801041945676e-20, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999998, -4.351980104194578e-15, -3.829742491691229e-15] +409: * +409: MSE [ 2, 2, 5.00] 1944.674 [-1.852340576642453e-17, -0.000002038776367716371, 0.0000020387763875127225, -15.000000000094076, -0.000022427961022124713, -0.000022427960958317816] -141.42 +409: :: [-2.2464214183992567e-18, -3.3499860475683525e-7, 3.3499860572587504e-7, -19.999999999999872, -9.942357120862573e-7, -9.942357114252402e-7] +409: * +409: MSE [ 3, 3, 2.50] 1989.993 [-1.2093848835661368e-16, -0.000008253984618996515, 0.00000825398472647877, -17.499999999592845, -0.000055572556916401324, -0.00005557255639161924] 45.32 +409: MSE [ 4, 4, 2.50] 1946.484 [-2.427124070591828e-14, -0.0010533617728272892, 0.001053361792846009, -19.999966305224685, -0.0089923700458209, -0.008992369921032257] -43.51 +409: EndEvent: [-2.427124070591828e-14, -0.0010533617728272892, 0.001053361792846009, -19.999966305224685, -0.0089923700458209, -0.008992369921032257] +409: VersorTransformOptimizer: Maximum number of iterations (5) exceeded. +409: ITK registration complete +409: [2] xf_out->m_type = 2, xf_in->m_type = 0 +409: Warping... +409: plm_warp_itk: xform_to_itk_vf +409: plm_warp_itk: convert_to_itk +409: plm_warp_itk: warping... +409: Saving image... +409: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stage-1.mha +409: Doing registration stage +409: [1] xf_in->m_type = 2, xf_out->m_type = 0 +409: SUBSAMPLE: (1 1 1), (1 1 1) +409: volume_calc_grad complete. +409: kerx: 0.0000000000 1.0000000000 0.0000000000 +409: kery: 0.0000000000 1.0000000000 0.0000000000 +409: kerz: 0.0000000000 1.0000000000 0.0000000000 +409: MSE [ 0] 4770.7 (0.947) [ 0.044 secs] +409: MSE [ 1] 4770.7 (0.947) [ 0.043 secs] +409: MSE [ 2] 4770.7 (0.947) [ 0.042 secs] +409: MSE [ 3] 4770.7 (0.947) [ 0.049 secs] +409: MSE [ 4] 4770.7 (0.947) [ 0.046 secs] +409: Time for 5 iterations = 0.224358 (0.044872 sec / it) +409: [2] xf_out->m_type = 10, xf_in->m_type = 2 +409: ** Registration worker thread finished. +409: Warping... +409: plm_warp_itk: xform_to_itk_vf +409: plm_warp_itk: convert_to_itk +409: plm_warp_itk: warping... +409: Saving image... +409: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-img.nrrd +409: Saving vf... +409: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd +409: Load: 0.0889039 +409: Run: 0.328158 +409: Save: 0.0674338 +409: Total: 0.484496 +409: Finished! +409: +409: STDERR: +409: Not an error +116/578 Test #409: plm-reg-multi-a ....................... Passed 0.94 sec 382: RETVAL: 0 382: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha 382: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha @@ -9896,27 +9970,27 @@ 382: Setting nmax, mmax = 1536 41 382: >>> START 382: This problem is unconstrained. -382: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.020 s ] +382: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.004 s ] 382: MSE 1339.480 LM 446.242 382: CMIN 0.00 CAVG 0.00 CMAX 0.00 382: LSD 0.00 -382: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.025 s ] +382: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.003 s ] 382: MSE 1303.402 LM 437.384 382: CMIN -0.03 CAVG 0.00 CMAX 0.57 382: LSD 1.00 -382: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.023 s ] +382: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.003 s ] 382: MSE 1164.662 LM 402.938 382: CMIN -0.17 CAVG 0.01 CMAX 2.86 382: LSD 5.00 -382: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.008 s ] +382: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.003 s ] 382: MSE 698.326 LM 280.914 382: CMIN -0.71 CAVG 0.05 CMAX 12.03 382: LSD 21.00 -382: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.008 s ] +382: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.004 s ] 382: MSE 81.402 LM 37.433 382: CMIN -1.76 CAVG 0.19 CMAX 39.56 382: LSD 55.80 -382: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.008 s ] +382: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.004 s ] 382: MSE 47.343 LM 22.393 382: CMIN -3.07 CAVG 0.19 CMAX 44.32 382: LSD 10.82 @@ -9965,869 +10039,15 @@ 382: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha 382: Saving vf... 382: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-vf.mha -382: Load: 0.345195 -382: Run: 0.234429 -382: Save: 0.110904 -382: Total: 0.690528 +382: Load: 0.0780809 +382: Run: 0.297557 +382: Save: 0.084549 +382: Total: 0.460187 382: Finished! 382: 382: STDERR: 382: Not an error -385: RETVAL: 0 -385: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha -385: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha -385: Launching registration worker thread -385: Inside registration worker thread -385: Doing registration stage -385: [1] xf_in->m_type = 0, xf_out->m_type = 0 -385: RESAMPLE 1 1: (2 2 2), (2 2 2) -385: RESAMPLE 1 1: (2 2 2), (2 2 2) -385: volume_calc_grad complete. -385: bspline_xform_initialize -385: Warning: vox_per_rgn was less than 4. -385: Warning: vox_per_rgn was less than 4. -385: Warning: vox_per_rgn was less than 4. -385: rdims = (5,5,5) -385: vox_per_rgn = (4,4,4) -385: cdims = (8 8 8) -385: Algorithm flavor = h -385: Threading = 0 -385: Landmarks: 8 fixed, 8 moving, lambda = 1.000000 -385: >> Checking JH allocation -385: Computing landmark grid coordinates -385: image dc=-1 0 0 0 -1 0 0 0 1 -385: image or=250 250 -236.842 -385: image dm=19 19 19 -385: [0], (-51.7821 -52.1629 46.0528) -> (11.467712 11.482183 10.750000) -385: [1], (52.5439 -52.1629 46.053) -> (7.503327 11.482183 10.750008) -385: [2], (53.3054 53.6862 46.053) -> (7.474390 7.459919 10.750008) -385: [3], (-52.5436 52.9247 46.053) -> (11.496650 7.488857 10.750008) -385: [4], (-52.5436 -52.1629 -46.0525) -> (11.496650 11.482183 7.250000) -385: [5], (53.3054 -51.7821 -46.053) -> (7.474390 11.467712 7.249981) -385: [6], (52.1632 53.3054 -46.053) -> (7.517794 7.474390 7.249981) -385: [7], (-52.9244 53.3054 -46.053) -> (11.511120 7.474390 7.249981) -385: BSPLINE PARMS -385: max_its = 5 -385: max_feval = 5 -385: BSPLINE XFORM HEADER -385: vox_per_rgn = 4 4 4 -385: roi_offset = 0 0 0 -385: roi_dim = 19 19 19 -385: img_dc = -1 0 0 0 -1 0 0 0 1 -385: BST METRICS -385: MET 110100 MSE 1.000000 -385: Setting nmax, mmax = 1536 41 -385: >>> START -385: This problem is unconstrained. -385: [ 0, 0] SCORE 1785.722 NV 6859 GM -104.585 GN 27.6 [ 0.026 s ] -385: MSE 1339.480 LM 446.242 -385: CMIN 0.00 CAVG 0.00 CMAX 0.00 -385: LSD 0.00 -385: [ 0, 1] SCORE 1740.786 NV 6859 GM -103.163 GN 27.2 [ 0.005 s ] -385: MSE 1303.402 LM 437.384 -385: CMIN -0.03 CAVG 0.00 CMAX 0.57 -385: LSD 1.00 -385: [ 0, 2] SCORE 1567.600 NV 6859 GM -97.477 GN 25.7 [ 0.017 s ] -385: MSE 1164.662 LM 402.938 -385: CMIN -0.17 CAVG 0.01 CMAX 2.86 -385: LSD 5.00 -385: [ 0, 3] SCORE 979.240 NV 6859 GM -74.784 GN 19.7 [ 0.017 s ] -385: MSE 698.326 LM 280.914 -385: CMIN -0.71 CAVG 0.05 CMAX 12.03 -385: LSD 21.00 -385: [ 1, 4] SCORE 118.835 NV 6859 GM 0.596 GN 3.68 [ 0.025 s ] -385: MSE 81.402 LM 37.433 -385: CMIN -1.76 CAVG 0.19 CMAX 39.56 -385: LSD 55.80 -385: [ 2, 5] SCORE 69.736 NV 6859 GM 2.657 GN 2.64 [ 0.025 s ] -385: MSE 47.343 LM 22.393 -385: CMIN -3.07 CAVG 0.19 CMAX 44.32 -385: LSD 10.82 -385: [2] xf_out->m_type = 9, xf_in->m_type = 0 -385: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -385: bspline_xform_initialize -385: rdims = (5,5,5) -385: vox_per_rgn = (8,8,8) -385: cdims = (8 8 8) -385: ** Registration worker thread finished. -385: Writing transformation ... -385: Warping... -385: Running: plm_warp_native -385: Converting input image... -385: Converting xform... -385: bspline_xform_initialize -385: rdims = (5,5,5) -385: vox_per_rgn = (8,8,8) -385: cdims = (8 8 8) -385: Creating output vf... -385: Creating output volume... -385: Running native warper... -385: bspline_warp complete. -385: Back convert to original type... -385: > Convert vf to itk -385: > Conversion complete. -385: plm_warp_native is complete. -385: Saving image... -385: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha -385: Saving vf... -385: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-vf.mha -385: Load: 0.250596 -385: Run: 0.187707 -385: Save: 0.113621 -385: Total: 0.551924 -385: Finished! -385: -385: STDERR: -385: Not an error -121/578 Test #382: plm-bsp-landmark-c .................... Passed 1.68 sec -122/578 Test #385: plm-bsp-landmark-d .................... Passed 1.55 sec -test 433 - Start 433: plm-reg-trans-mi-a - -433: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -433: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -433: Test timeout computed to be: 1500 -test 436 - Start 436: plm-reg-autores-a - -436: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -436: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -436: Test timeout computed to be: 1500 -430: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -430: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.txt -430: EXPECTED_ERRNO is -388: RETVAL: 0 -388: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha -388: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha -388: Loading fixed landmarks: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.txt -388: Error parsing fcsv file: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.txt -388: Loading moving landmarks: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.txt -388: Error parsing fcsv file: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.txt -388: Launching registration worker thread -388: Inside registration worker thread -388: Doing registration stage -388: [1] xf_in->m_type = 0, xf_out->m_type = 0 -388: RESAMPLE 1 1: (2 2 2), (2 2 2) -388: RESAMPLE 1 1: (2 2 2), (2 2 2) -388: volume_calc_grad complete. -388: bspline_xform_initialize -388: Warning: vox_per_rgn was less than 4. -388: Warning: vox_per_rgn was less than 4. -388: Warning: vox_per_rgn was less than 4. -388: rdims = (5,5,5) -388: vox_per_rgn = (4,4,4) -388: cdims = (8 8 8) -388: Algorithm flavor = h -388: Threading = 0 -388: Landmarks: 0 fixed, 0 moving, lambda = 1.000000 -388: >> Checking JH allocation -388: BSPLINE PARMS -388: max_its = 5 -388: max_feval = 5 -388: BSPLINE XFORM HEADER -388: vox_per_rgn = 4 4 4 -388: roi_offset = 0 0 0 -388: roi_dim = 19 19 19 -388: img_dc = -1 0 0 0 -1 0 0 0 1 -388: BST METRICS -388: MET 110100 MSE 1.000000 -388: Setting nmax, mmax = 1536 41 -388: >>> START -388: This problem is unconstrained. -388: [ 0, 0] MSE 1339.480 NV 6859 GM -84.834 GN 23.2 [ 0.015 s ] -388: CMIN 0.00 CAVG 0.00 CMAX 0.00 -388: LSD 0.00 -388: [ 0, 1] MSE 1303.294 NV 6859 GM -83.620 GN 22.8 [ 0.033 s ] -388: CMIN -0.04 CAVG 0.00 CMAX 0.59 -388: LSD 1.00 -388: [ 0, 2] MSE 1164.232 NV 6859 GM -78.768 GN 21.5 [ 0.045 s ] -388: CMIN -0.19 CAVG 0.01 CMAX 2.96 -388: LSD 5.00 -388: [ 0, 3] MSE 698.336 NV 6859 GM -59.420 GN 16.2 [ 0.019 s ] -388: CMIN -0.80 CAVG 0.05 CMAX 12.42 -388: LSD 21.00 -388: [ 1, 4] MSE 89.012 NV 6859 GM 0.171 GN 3.29 [ 0.021 s ] -388: CMIN -2.05 CAVG 0.17 CMAX 39.56 -388: LSD 52.33 -388: [ 2, 5] MSE 51.991 NV 6859 GM 2.502 GN 2.38 [ 0.024 s ] -388: CMIN -3.69 CAVG 0.18 CMAX 41.73 -388: LSD 11.03 -388: [2] xf_out->m_type = 9, xf_in->m_type = 0 -388: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -388: bspline_xform_initialize -388: rdims = (5,5,5) -388: vox_per_rgn = (8,8,8) -388: cdims = (8 8 8) -388: ** Registration worker thread finished. -388: Writing transformation ... -388: Warping... -388: Running: plm_warp_native -388: Converting input image... -388: Converting xform... -388: bspline_xform_initialize -388: rdims = (5,5,5) -388: vox_per_rgn = (8,8,8) -388: cdims = (8 8 8) -388: Creating output vf... -388: Creating output volume... -388: Running native warper... -388: bspline_warp complete. -388: Back convert to original type... -388: > Convert vf to itk -388: > Conversion complete. -388: plm_warp_native is complete. -388: Saving image... -388: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha -388: Saving warped landmarks... -388: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-warped.fcsv -388: Saving vf... -388: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-vf.mha -388: Load: 0.220344 -388: Run: 0.20321 -388: Save: 0.149459 -388: Total: 0.573013 -388: Finished! -388: -388: STDERR: -388: Not an error -433: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -433: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.txt -433: EXPECTED_ERRNO is -123/578 Test #388: plm-bsp-landmark-e .................... Passed 1.52 sec -test 439 - Start 439: plm-reg-autores-b - -439: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -439: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -439: Test timeout computed to be: 1500 -436: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -436: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.txt -436: EXPECTED_ERRNO is -439: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -439: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.txt -439: EXPECTED_ERRNO is -403: RETVAL: 0 -403: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -403: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha -403: Launching registration worker thread -403: Inside registration worker thread -403: Doing registration stage -403: [1] xf_in->m_type = 0, xf_out->m_type = 0 -403: RESAMPLE 1 1: (2 2 2), (2 2 2) -403: RESAMPLE 1 1: (2 2 2), (2 2 2) -403: volume_calc_grad complete. -403: bspline_xform_initialize -403: Warning: vox_per_rgn was less than 4. -403: Warning: vox_per_rgn was less than 4. -403: Warning: vox_per_rgn was less than 4. -403: rdims = (5,5,5) -403: vox_per_rgn = (4,4,4) -403: cdims = (8 8 8) -403: Algorithm flavor = h -403: Threading = 0 -403: >> Checking JH allocation -403: BSPLINE PARMS -403: max_its = 5 -403: max_feval = 5 -403: BSPLINE XFORM HEADER -403: vox_per_rgn = 4 4 4 -403: roi_offset = 0 0 0 -403: roi_dim = 19 19 19 -403: img_dc = 1 0 0 0 1 0 0 0 1 -403: BST METRICS -403: MET 110100 MSE 1.000000 -403: Setting nmax, mmax = 1536 41 -403: >>> START -403: This problem is unconstrained. -403: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.005 s ] -403: CMIN 0.00 CAVG 0.00 CMAX 0.00 -403: LSD 0.00 -403: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.005 s ] -403: CMIN -0.42 CAVG -0.00 CMAX 0.04 -403: LSD 1.00 -403: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.005 s ] -403: CMIN -2.08 CAVG -0.02 CMAX 0.22 -403: LSD 5.00 -403: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.005 s ] -403: CMIN -8.76 CAVG -0.07 CMAX 0.93 -403: LSD 21.00 -403: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.004 s ] -403: CMIN -35.44 CAVG -0.29 CMAX 3.78 -403: LSD 85.00 -403: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.008 s ] -403: CMIN -126.28 CAVG -0.93 CMAX 14.98 -403: LSD 199.65 -403: [2] xf_out->m_type = 9, xf_in->m_type = 0 -403: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -403: bspline_xform_initialize -403: rdims = (5,5,5) -403: vox_per_rgn = (8,8,8) -403: cdims = (8 8 8) -403: ** Registration worker thread finished. -403: Writing transformation ... -403: Warping... -403: Running: plm_warp_native -403: Converting input image... -403: Converting xform... -403: bspline_xform_initialize -403: rdims = (5,5,5) -403: vox_per_rgn = (8,8,8) -403: cdims = (8 8 8) -403: Creating output vf... -403: Creating output volume... -403: Running native warper... -403: bspline_warp complete. -403: Back convert to original type... -403: > Convert vf to itk -403: > Conversion complete. -403: plm_warp_native is complete. -403: Saving image... -403: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd -403: Saving vf... -403: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-vf.nrrd -403: Load: 0.113447 -403: Run: 0.0911932 -403: Save: 0.294657 -403: Total: 0.499297 -403: Finished! -403: -403: STDERR: -397: RETVAL: 0 -397: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -397: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha -397: Launching registration worker thread -397: Inside registration worker thread -397: Doing registration stage -397: [1] xf_in->m_type = 0, xf_out->m_type = 0 -397: RESAMPLE 1 1: (2 2 2), (2 2 2) -397: RESAMPLE 1 1: (2 2 2), (2 2 2) -397: volume_calc_grad complete. -397: bspline_xform_initialize -397: Warning: vox_per_rgn was less than 4. -397: Warning: vox_per_rgn was less than 4. -397: Warning: vox_per_rgn was less than 4. -397: rdims = (5,5,5) -397: vox_per_rgn = (4,4,4) -397: cdims = (8 8 8) -397: Algorithm flavor = c -397: Threading = 0 -397: >> Checking JH allocation -397: BSPLINE PARMS -397: max_its = 5 -397: max_feval = 5 -397: BSPLINE XFORM HEADER -397: vox_per_rgn = 4 4 4 -397: roi_offset = 0 0 0 -397: roi_dim = 19 19 19 -397: img_dc = 1 0 0 0 1 0 0 0 1 -397: BST METRICS -397: MET 110100 MSE 1.000000 -397: Setting nmax, mmax = 1536 41 -397: >>> START -397: This problem is unconstrained. -397: [ 0, 0] MSE 1969.041 NV 5719 GM 151.518 GN 29 [ 0.014 s ] -397: CMIN 0.00 CAVG 0.00 CMAX 0.00 -397: LSD 0.00 -397: [ 0, 1] MSE 1948.894 NV 5719 GM 150.797 GN 28.8 [ 0.016 s ] -397: CMIN -0.42 CAVG -0.00 CMAX 0.04 -397: LSD 1.00 -397: [ 0, 2] MSE 1873.203 NV 5719 GM 152.313 GN 29.2 [ 0.028 s ] -397: CMIN -2.08 CAVG -0.02 CMAX 0.22 -397: LSD 5.00 -397: [ 0, 3] MSE 1636.132 NV 5719 GM 148.988 GN 28.8 [ 0.031 s ] -397: CMIN -8.76 CAVG -0.07 CMAX 0.93 -397: LSD 21.00 -397: [ 0, 4] MSE 1351.435 NV 5719 GM 79.113 GN 23.8 [ 0.032 s ] -397: CMIN -35.44 CAVG -0.29 CMAX 3.78 -397: LSD 85.00 -397: [ 1, 5] MSE 6291.440 NV 5719 GM -73.340 GN 33.2 [ 0.032 s ] -397: CMIN -126.28 CAVG -0.93 CMAX 14.98 -397: LSD 199.65 -397: [2] xf_out->m_type = 9, xf_in->m_type = 0 -397: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -397: bspline_xform_initialize -397: rdims = (5,5,5) -397: vox_per_rgn = (8,8,8) -397: cdims = (8 8 8) -397: ** Registration worker thread finished. -397: Writing transformation ... -397: Warping... -397: Running: plm_warp_native -397: Converting input image... -397: Converting xform... -397: bspline_xform_initialize -397: rdims = (5,5,5) -397: vox_per_rgn = (8,8,8) -397: cdims = (8 8 8) -397: Creating output vf... -397: Creating output volume... -397: Running native warper... -397: bspline_warp complete. -397: Back convert to original type... -397: > Convert vf to itk -397: > Conversion complete. -397: plm_warp_native is complete. -397: Saving image... -397: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd -397: Saving vf... -397: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-vf.nrrd -397: Load: 0.189432 -397: Run: 0.230708 -397: Save: 0.288244 -397: Total: 0.708384 -397: Finished! -397: -397: STDERR: -397: Not an error -403: Not an error -124/578 Test #403: plm-bsp-dcos-e ........................ Passed 1.53 sec -test 444 - Start 444: plm-compose-a - -444: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -444: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -444: Test timeout computed to be: 1500 -125/578 Test #397: plm-bsp-dcos-c ........................ Passed 2.00 sec -test 448 - Start 448: plm-compose-b - -448: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -448: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -448: Test timeout computed to be: 1500 -444: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -444: PARMS is compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-xf.txt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha -444: EXPECTED_ERRNO is -372: RETVAL: 0 -372: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -372: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha -372: Launching registration worker thread -372: Inside registration worker thread -372: Doing registration stage -372: [1] xf_in->m_type = 0, xf_out->m_type = 0 -372: RESAMPLE 1 1: (1 1 1), (1 1 1) -372: RESAMPLE 1 1: (1 1 1), (1 1 1) -372: volume_calc_grad complete. -372: bspline_xform_initialize -372: Warning: vox_per_rgn was less than 4. -372: Warning: vox_per_rgn was less than 4. -372: Warning: vox_per_rgn was less than 4. -372: rdims = (10,10,10) -372: vox_per_rgn = (4,4,4) -372: cdims = (13 13 13) -372: Algorithm flavor = g -372: Threading = 0 -372: Regularization: flavor = c lambda = 1.000000 -372: Regularizer initialized -372: >> Checking JH allocation -372: BSPLINE PARMS -372: max_its = 5 -372: max_feval = 5 -372: BSPLINE XFORM HEADER -372: vox_per_rgn = 4 4 4 -372: roi_offset = 0 0 0 -372: roi_dim = 38 38 38 -372: img_dc = 1 0 0 0 1 0 0 0 1 -372: BST METRICS -372: MET 110100 MSE 1.000000 -372: Setting nmax, mmax = 6591 83 -372: >>> START -372: This problem is unconstrained. -372: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.283 s ] -372: MSE 5540.166 RM 0.000 [ 0.091 | 0.193 ] -372: CMIN 0.00 CAVG 0.00 CMAX 0.00 -372: LSD 0.00 -372: [ 0, 1] SCORE 5484.176 NV 54872 GM 0.045 GN 27.7 [ 0.237 s ] -372: MSE 5484.124 RM 0.052 [ 0.070 | 0.167 ] -372: CMIN -0.16 CAVG -0.00 CMAX 0.22 -372: LSD 1.00 -372: [ 0, 2] SCORE 5267.543 NV 54872 GM 0.224 GN 25.9 [ 0.249 s ] -372: MSE 5266.236 RM 1.307 [ 0.080 | 0.169 ] -372: CMIN -0.81 CAVG 0.00 CMAX 1.12 -372: LSD 5.00 -372: [ 0, 3] SCORE 4507.597 NV 54872 GM 0.928 GN 18.7 [ 0.208 s ] -372: MSE 4484.536 RM 23.060 [ 0.047 | 0.161 ] -372: CMIN -3.39 CAVG 0.00 CMAX 4.70 -372: LSD 21.00 -372: [ 1, 4] SCORE 3149.129 NV 54872 GM 4.968 GN 2.36 [ 0.190 s ] -372: MSE 2955.678 RM 193.451 [ 0.029 | 0.161 ] -372: CMIN -10.06 CAVG -0.00 CMAX 13.65 -372: LSD 42.53 -372: [ 2, 5] SCORE 3079.150 NV 54872 GM -1.061 GN 2.72 [ 0.260 s ] -372: MSE 2880.344 RM 198.806 [ 0.050 | 0.210 ] -372: CMIN -10.75 CAVG -0.00 CMAX 13.43 -372: LSD 6.23 -372: [2] xf_out->m_type = 9, xf_in->m_type = 0 -372: ** Registration worker thread finished. -372: Writing transformation ... -372: Warping... -372: Running: plm_warp_native -372: Converting input image... -372: Converting xform... -372: bspline_xform_initialize -372: rdims = (10,10,10) -372: vox_per_rgn = (4,4,4) -372: cdims = (13 13 13) -372: Creating output vf... -372: Creating output volume... -372: Running native warper... -372: bspline_warp complete. -372: Back convert to original type... -372: > Convert vf to itk -372: > Conversion complete. -372: plm_warp_native is complete. -372: Saving image... -372: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-img.mha -372: Saving vf... -372: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha -372: Load: 0.227708 -372: Run: 1.49557 -372: Save: 0.192214 -372: Total: 1.91549 -372: Finished! -372: -372: STDERR: -448: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -448: PARMS is compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha -448: EXPECTED_ERRNO is -415: RETVAL: 0 -415: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -415: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -415: Launching registration worker thread -415: Inside registration worker thread -415: Doing registration stage -415: [1] xf_in->m_type = 0, xf_out->m_type = 0 -415: Fixed image for this stage: -415: Dim = 19 19 19 -415: Origin = -24.3421 -24.3421 -24.3421 -415: Spacing = 2.63158 2.63158 2.63158 -415: Direction Cosines = -415: 1 0 0 -415: 0 1 0 -415: 0 0 1 -415: Moving image for this stage: -415: Dim = 19 19 19 -415: Origin = -24.3421 -24.3421 -24.3421 -415: Spacing = 2.63158 2.63158 2.63158 -415: Direction Cosines = -415: 1 0 0 -415: 0 1 0 -415: 0 0 1 -415: Initial Parameters = [0, 0, 0] -415: Starting ITK registration -415: StartEvent: [0, 0, 0] -415: MSE [ 0, 0,10.00] 18756.235 [9.999997615028182, -0.004883617032987322, -0.0048836170329867165] -415: :: [0, 0, 0] -415: * -415: MSE [ 1, 1, 5.00] 1.116 [5.318441699151487, 1.2366948554205888, 1.2366948554204333] -18755.12 -415: :: [9.999997615028182, -0.004883617032987322, -0.0048836170329867165] -415: * -415: MSE [ 2, 2, 2.50] 5544.602 [7.610651940085816, 0.5310844064631239, 0.5310844064630578] 5543.49 -415: MSE [ 3, 3, 2.50] 1453.699 [9.961460585442492, -0.0704547497505037, -0.07045474975049593] -4090.90 -415: MSE [ 4, 4, 1.25] 4.252 [10.130622373667428, 0.8052975809357099, 0.8052975809356439] -1449.45 -415: EndEvent: [10.130622373667428, 0.8052975809357099, 0.8052975809356439] -415: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. -415: ITK registration complete -415: [2] xf_out->m_type = 1, xf_in->m_type = 0 -415: ** Registration worker thread finished. -415: Writing transformation ... -415: Warping... -415: plm_warp_itk: xform_to_itk_vf -415: plm_warp_itk: convert_to_itk -415: plm_warp_itk: warping... -415: Saving image... -415: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd -415: Saving vf... -415: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-vf.nrrd -415: Load: 0.335123 -415: Run: 0.0443649 -415: Save: 0.179587 -415: Total: 0.559075 -415: Finished! -415: -415: STDERR: -372: Not an error -415: Not an error -126/578 Test #372: plm-bsp-regularize-analytic ........... Passed 2.73 sec -test 452 - Start 452: plm-compose-c - -452: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -452: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -452: Test timeout computed to be: 1500 -127/578 Test #415: plm-reg-dv-itk-translation ............ Passed 1.32 sec -test 456 - Start 456: plm-resample-a - -456: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -456: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -456: Test timeout computed to be: 1500 -193: RETVAL: 0 -193: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648277.1717448217.582112RTDOSE -193: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648277.1717448217.582113RTSTRUCT -193: Found DCM_ReferencedFrameOfReferenceSequence! -193: Found DCM_RTReferencedStudySequence! -193: Trying to load rt dose. -193: Load: DoseGridScaling = 0.000000 -193: RTDOSE: dim = 100 100 100 -193: ipp = -247.500000 -247.500000 -247.500000 -193: spc = 5.000000 5.000000 5.000000 -193: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -193: Bits_alloc: 32 -193: Bits_stored: 32 -193: High_bit: 31 -193: Pixel_rep: 0 -193: rc = 1, length = 2000000, npix = 1000000 -193: Trying to load rt structure set. -193: Adding structure (1), Body -193: Adding structure (2), Tumor -193: Adding structure (3), Lung -193: Structure 1 has color 255\0\0 -193: Structure 2 has color 255\255\0 -193: Structure 3 has color 255\0\255 -193: Setting PIH from RDD -193: PIH is: -193: Origin = -247.5000 -247.5000 -247.5000 -193: Size = 100 100 100 -193: Spacing = 5.0000 5.0000 5.0000 -193: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -193: Rt_study_warp: Convert ss_img to cxt. -193: Rt_study_warp: Apply dicom_dir. -193: Rt_study_warp: Set geometry from PIH. -193: Rt_study_warp: Set rasterization geometry. -193: rast_dim = 512 512 99 -193: rast_offset = -157.5 -157.5 -247.5 -193: rast_spacing = 0.615234 0.615234 5 -193: Rt_study_warp: warp and save ss. -193: Warp_and_save_ss: seg->rasterize -193: Rasterizing... -193: Converting... -193: Finished rasterization. -193: Warp_and_save_ss: save_ss_img -193: save_ss_img: save_prefix -193: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Body.mha -193: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha -193: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Lung.mha -193: Finished! -193: -193: STDERR: -193: Not an error -452: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -452: PARMS is compose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-xf.txt;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-compose-vf.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha -452: EXPECTED_ERRNO is -456: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -456: PARMS is resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha;--output-type;float;--subsample;2 2 2 -456: EXPECTED_ERRNO is -128/578 Test #193: plm-convert-dicom-c ................... Passed 2.32 sec -test 459 - Start 459: plm-resample-b - -459: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -459: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -459: Test timeout computed to be: 1500 -424: RETVAL: 0 -424: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -424: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -424: Launching registration worker thread -424: Inside registration worker thread -424: *** Executing adjust process *** -424: ** Registration worker thread finished. -424: Warping... -424: plm_warp_itk: xform_to_itk_vf -424: plm_warp_itk: convert_to_itk -424: plm_warp_itk: warping... -424: Saving image... -424: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha -424: Load: 0.125345 -424: Run: 0.0104311 -424: Save: 0.0660901 -424: Total: 0.201866 -424: Finished! -424: -424: STDERR: -424: Not an error -129/578 Test #424: plm-reg-process-a ..................... Passed 1.43 sec -test 462 - Start 462: plm-resample-c - -462: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -462: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -462: Test timeout computed to be: 1500 -394: RETVAL: 0 -394: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha -394: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -394: Launching registration worker thread -394: Inside registration worker thread -394: Doing registration stage -394: [1] xf_in->m_type = 0, xf_out->m_type = 0 -394: RESAMPLE 1 1: (2 2 2), (2 2 2) -394: RESAMPLE 1 1: (2 2 2), (2 2 2) -394: volume_calc_grad complete. -394: bspline_xform_initialize -394: Warning: vox_per_rgn was less than 4. -394: Warning: vox_per_rgn was less than 4. -394: Warning: vox_per_rgn was less than 4. -394: rdims = (5,5,5) -394: vox_per_rgn = (4,4,4) -394: cdims = (8 8 8) -394: Algorithm flavor = g -394: Threading = 0 -394: >> Checking JH allocation -394: BSPLINE PARMS -394: max_its = 5 -394: max_feval = 5 -394: BSPLINE XFORM HEADER -394: vox_per_rgn = 4 4 4 -394: roi_offset = 0 0 0 -394: roi_dim = 19 19 19 -394: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 -394: BST METRICS -394: MET 110100 MSE 1.000000 -394: Setting nmax, mmax = 1536 41 -394: >>> START -394: This problem is unconstrained. -394: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.073 s ] -394: CMIN 0.00 CAVG 0.00 CMAX 0.00 -394: LSD 0.00 -394: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.052 s ] -394: CMIN -0.09 CAVG 0.00 CMAX 0.49 -394: LSD 1.00 -394: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.048 s ] -394: CMIN -0.46 CAVG 0.01 CMAX 2.46 -394: LSD 5.00 -394: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.072 s ] -394: CMIN -1.93 CAVG 0.04 CMAX 10.33 -394: LSD 21.00 -394: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.056 s ] -394: CMIN -14.50 CAVG 0.20 CMAX 61.00 -394: LSD 95.90 -394: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.028 s ] -394: CMIN -12.15 CAVG 0.16 CMAX 47.74 -394: LSD 26.24 -394: [2] xf_out->m_type = 9, xf_in->m_type = 0 -394: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -394: bspline_xform_initialize -394: rdims = (5,5,5) -394: vox_per_rgn = (8,8,8) -394: cdims = (8 8 8) -394: ** Registration worker thread finished. -394: Writing transformation ... -394: Warping... -394: Running: plm_warp_native -394: Converting input image... -394: Converting xform... -394: bspline_xform_initialize -394: rdims = (5,5,5) -394: vox_per_rgn = (8,8,8) -394: cdims = (8 8 8) -394: Creating output vf... -394: Creating output volume... -394: Running native warper... -394: bspline_warp complete. -394: Back convert to original type... -394: > Convert vf to itk -394: > Conversion complete. -394: plm_warp_native is complete. -394: Saving image... -394: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd -394: Saving vf... -394: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-vf.nrrd -394: Load: 0.277569 -394: Run: 0.371567 -394: Save: 0.436787 -394: Total: 1.08592 -394: Finished! -394: -394: STDERR: -394: Not an error -298: RETVAL: 0 -298: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -298: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -298: Launching registration worker thread -298: Inside registration worker thread -298: Doing registration stage -298: [1] xf_in->m_type = 0, xf_out->m_type = 0 -298: Fixed image for this stage: -298: Dim = 38 38 38 -298: Origin = -25 -25 -25 -298: Spacing = 1.31579 1.31579 1.31579 -298: Direction Cosines = -298: 1 0 0 -298: 0 1 0 -298: 0 0 1 -298: Moving image for this stage: -298: Dim = 38 38 38 -298: Origin = -25 -25 -25 -298: Spacing = 1.31579 1.31579 1.31579 -298: Direction Cosines = -298: 1 0 0 -298: 0 1 0 -298: 0 0 1 -298: Starting ITK registration -298: StartEvent: -298: MSE [ 0, 0] 18945.891 [ 0.240 secs] -298: MSE [ 0, 1] 18140.496 [ 0.160 secs] -298: MSE [ 0, 2] 14979.440 [ 0.223 secs] -298: MSE [ 0, 3] 5390.861 [ 0.269 secs] -298: MSE [ 0, 4,319.84] 5390.861 * -298: MSE [ 1, 5] 4259.522 [ 0.256 secs] -298: MSE [ 1, 6,313.58] 4259.522 -1131.34 * -298: MSE [ 2, 7] 465.644 [ 0.232 secs] -298: MSE [ 2, 8,36.78] 465.644 -3793.88 * -298: MSE [ 3, 9] 382.530 [ 0.256 secs] -298: MSE [ 3, 10,21.77] 382.530 -83.11 * -298: MSE [ 4, 11] 289.494 [ 0.188 secs] -298: MSE [ 4, 12,13.35] 289.494 -93.04 * -298: MSE [ 5, 13] 226.103 [ 0.320 secs] -298: MSE [ 5, 14,21.50] 226.103 -63.39 * -298: EndEvent: -298: Too many iterations. Iterations = 6 -298: LBFGSBOptimizer: -298: ITK registration complete -298: [2] xf_out->m_type = 6, xf_in->m_type = 0 -298: ** Registration worker thread finished. -298: Writing transformation ... -298: Warping... -298: plm_warp_itk: xform_to_itk_vf -298: plm_warp_itk: convert_to_itk -298: plm_warp_itk: warping... -298: Saving image... -298: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha -298: Saving vf... -298: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-vf.mha -298: Load: 0.112126 -298: Run: 2.7943 -298: Save: 0.392222 -298: Total: 3.29864 -298: Finished! -298: -298: STDERR: -298: Not an error -459: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -459: PARMS is resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha;--output-type;float;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha -459: EXPECTED_ERRNO is -130/578 Test #298: plm-reg-itk-bspline ................... Passed 3.81 sec -131/578 Test #394: plm-bsp-dcos-b ........................ Passed 2.48 sec -test 465 - Start 465: plm-scale-a - -465: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -465: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -465: Test timeout computed to be: 1500 -test 468 - Start 468: plm-scale-vf-a - -468: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=scale;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -468: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -468: Test timeout computed to be: 1500 -468: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -468: PARMS is scale;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha -468: EXPECTED_ERRNO is -462: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -462: PARMS is resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha -462: EXPECTED_ERRNO is -465: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -465: PARMS is scale;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd;--weight;0.4;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha -465: EXPECTED_ERRNO is +117/578 Test #382: plm-bsp-landmark-c .................... Passed 1.08 sec 436: RETVAL: 0 436: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 436: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -11069,13 +10289,837 @@ 436: plm_warp_itk: warping... 436: Saving image... 436: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha -436: Load: 0.130859 -436: Run: 0.214554 -436: Save: 0.0621319 -436: Total: 0.407545 +436: Load: 0.0565081 +436: Run: 0.103107 +436: Save: 0.0111279 +436: Total: 0.170743 436: Finished! 436: 436: STDERR: +436: Not an error +415: RETVAL: 0 +415: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +415: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +415: Launching registration worker thread +415: Inside registration worker thread +415: Doing registration stage +415: [1] xf_in->m_type = 0, xf_out->m_type = 0 +415: Fixed image for this stage: +415: Dim = 19 19 19 +415: Origin = -24.3421 -24.3421 -24.3421 +415: Spacing = 2.63158 2.63158 2.63158 +415: Direction Cosines = +415: 1 0 0 +415: 0 1 0 +415: 0 0 1 +415: Moving image for this stage: +415: Dim = 19 19 19 +415: Origin = -24.3421 -24.3421 -24.3421 +415: Spacing = 2.63158 2.63158 2.63158 +415: Direction Cosines = +415: 1 0 0 +415: 0 1 0 +415: 0 0 1 +415: Initial Parameters = [0, 0, 0] +415: Starting ITK registration +415: StartEvent: [0, 0, 0] +415: MSE [ 0, 0,10.00] 18756.235 [9.999997615028182, -0.004883617032987085, -0.00488361703298731] +415: :: [0, 0, 0] +415: * +415: MSE [ 1, 1, 5.00] 1.116 [5.318441699151528, 1.2366948554205826, 1.2366948554205925] -18755.12 +415: :: [9.999997615028182, -0.004883617032987085, -0.00488361703298731] +415: * +415: MSE [ 2, 2, 2.50] 5544.602 [7.610651940085832, 0.5310844064631247, 0.5310844064631272] 5543.49 +415: MSE [ 3, 3, 2.50] 1453.699 [9.961460585442488, -0.07045474975050137, -0.07045474975050403] -4090.90 +415: MSE [ 4, 4, 1.25] 4.252 [10.13062237366747, 0.8052975809356626, 0.8052975809356772] -1449.45 +415: EndEvent: [10.13062237366747, 0.8052975809356626, 0.8052975809356772] +415: RegularStepGradientDescentOptimizer: Maximum number of iterations (5) exceeded. +415: ITK registration complete +415: [2] xf_out->m_type = 1, xf_in->m_type = 0 +415: ** Registration worker thread finished. +415: Writing transformation ... +415: Warping... +415: plm_warp_itk: xform_to_itk_vf +415: plm_warp_itk: convert_to_itk +415: plm_warp_itk: warping... +415: Saving image... +415: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd +415: Saving vf... +415: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-vf.nrrd +415: Load: 0.092824 +415: Run: 0.198697 +415: Save: 0.200326 +415: Total: 0.491847 +415: Finished! +415: +415: STDERR: +415: Not an error +388: RETVAL: 0 +388: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-15.mha +388: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-16.mha +388: Loading fixed landmarks: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.txt +388: Error parsing fcsv file: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.txt +388: Loading moving landmarks: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.txt +388: Error parsing fcsv file: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.txt +388: Launching registration worker thread +388: Inside registration worker thread +388: Doing registration stage +388: [1] xf_in->m_type = 0, xf_out->m_type = 0 +388: RESAMPLE 1 1: (2 2 2), (2 2 2) +388: RESAMPLE 1 1: (2 2 2), (2 2 2) +388: volume_calc_grad complete. +388: bspline_xform_initialize +388: Warning: vox_per_rgn was less than 4. +388: Warning: vox_per_rgn was less than 4. +388: Warning: vox_per_rgn was less than 4. +388: rdims = (5,5,5) +388: vox_per_rgn = (4,4,4) +388: cdims = (8 8 8) +388: Algorithm flavor = h +388: Threading = 0 +388: Landmarks: 0 fixed, 0 moving, lambda = 1.000000 +388: >> Checking JH allocation +388: BSPLINE PARMS +388: max_its = 5 +388: max_feval = 5 +388: BSPLINE XFORM HEADER +388: vox_per_rgn = 4 4 4 +388: roi_offset = 0 0 0 +388: roi_dim = 19 19 19 +388: img_dc = -1 0 0 0 -1 0 0 0 1 +388: BST METRICS +388: MET 110100 MSE 1.000000 +388: Setting nmax, mmax = 1536 41 +388: >>> START +388: This problem is unconstrained. +388: [ 0, 0] MSE 1339.480 NV 6859 GM -84.834 GN 23.2 [ 0.023 s ] +388: CMIN 0.00 CAVG 0.00 CMAX 0.00 +388: LSD 0.00 +388: [ 0, 1] MSE 1303.294 NV 6859 GM -83.620 GN 22.8 [ 0.016 s ] +388: CMIN -0.04 CAVG 0.00 CMAX 0.59 +388: LSD 1.00 +388: [ 0, 2] MSE 1164.232 NV 6859 GM -78.768 GN 21.5 [ 0.016 s ] +388: CMIN -0.19 CAVG 0.01 CMAX 2.96 +388: LSD 5.00 +388: [ 0, 3] MSE 698.336 NV 6859 GM -59.420 GN 16.2 [ 0.004 s ] +388: CMIN -0.80 CAVG 0.05 CMAX 12.42 +388: LSD 21.00 +388: [ 1, 4] MSE 89.012 NV 6859 GM 0.171 GN 3.29 [ 0.004 s ] +388: CMIN -2.05 CAVG 0.17 CMAX 39.56 +388: LSD 52.33 +388: [ 2, 5] MSE 51.991 NV 6859 GM 2.502 GN 2.38 [ 0.004 s ] +388: CMIN -3.69 CAVG 0.18 CMAX 41.73 +388: LSD 11.03 +388: [2] xf_out->m_type = 9, xf_in->m_type = 0 +388: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +388: bspline_xform_initialize +388: rdims = (5,5,5) +388: vox_per_rgn = (8,8,8) +388: cdims = (8 8 8) +388: ** Registration worker thread finished. +388: Writing transformation ... +388: Warping... +388: Running: plm_warp_native +388: Converting input image... +388: Converting xform... +388: bspline_xform_initialize +388: rdims = (5,5,5) +388: vox_per_rgn = (8,8,8) +388: cdims = (8 8 8) +388: Creating output vf... +388: Creating output volume... +388: Running native warper... +388: bspline_warp complete. +388: Back convert to original type... +388: > Convert vf to itk +388: > Conversion complete. +388: plm_warp_native is complete. +388: Saving image... +388: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha +388: Saving warped landmarks... +388: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-warped.fcsv +388: Saving vf... +388: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-vf.mha +388: Load: 0.210653 +388: Run: 0.10208 +388: Save: 0.0832951 +388: Total: 0.396028 +388: Finished! +388: +388: STDERR: +388: Not an error +468: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +468: PARMS is scale;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd;--weight;0.4;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha +468: EXPECTED_ERRNO is +400: RETVAL: 0 +400: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha +400: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +400: Launching registration worker thread +400: Inside registration worker thread +400: Doing registration stage +400: [1] xf_in->m_type = 0, xf_out->m_type = 0 +400: RESAMPLE 1 1: (2 2 2), (2 2 2) +400: RESAMPLE 1 1: (2 2 2), (2 2 2) +400: volume_calc_grad complete. +400: bspline_xform_initialize +400: Warning: vox_per_rgn was less than 4. +400: Warning: vox_per_rgn was less than 4. +400: Warning: vox_per_rgn was less than 4. +400: rdims = (5,5,5) +400: vox_per_rgn = (4,4,4) +400: cdims = (8 8 8) +400: Algorithm flavor = c +400: Threading = 0 +400: >> Checking JH allocation +400: BSPLINE PARMS +400: max_its = 5 +400: max_feval = 5 +400: BSPLINE XFORM HEADER +400: vox_per_rgn = 4 4 4 +400: roi_offset = 0 0 0 +400: roi_dim = 19 19 19 +400: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 +400: BST METRICS +400: MET 110100 MSE 1.000000 +400: Setting nmax, mmax = 1536 41 +400: >>> START +400: This problem is unconstrained. +400: [ 0, 0] MSE 2326.658 NV 5814 GM -90.046 GN 30.1 [ 0.004 s ] +400: CMIN 0.00 CAVG 0.00 CMAX 0.00 +400: LSD 0.00 +400: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.003 s ] +400: CMIN -0.09 CAVG 0.00 CMAX 0.49 +400: LSD 1.00 +400: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.004 s ] +400: CMIN -0.46 CAVG 0.01 CMAX 2.46 +400: LSD 5.00 +400: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.004 s ] +400: CMIN -1.93 CAVG 0.04 CMAX 10.33 +400: LSD 21.00 +400: [ 1, 4] MSE 880.230 NV 5809 GM 22.704 GN 11.1 [ 0.002 s ] +400: CMIN -14.50 CAVG 0.20 CMAX 61.00 +400: LSD 95.90 +400: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.002 s ] +400: CMIN -12.15 CAVG 0.16 CMAX 47.74 +400: LSD 26.24 +400: [2] xf_out->m_type = 9, xf_in->m_type = 0 +400: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +400: bspline_xform_initialize +400: rdims = (5,5,5) +400: vox_per_rgn = (8,8,8) +400: cdims = (8 8 8) +400: ** Registration worker thread finished. +400: Writing transformation ... +400: Warping... +400: Running: plm_warp_native +400: Converting input image... +400: Converting xform... +400: bspline_xform_initialize +400: rdims = (5,5,5) +400: vox_per_rgn = (8,8,8) +400: cdims = (8 8 8) +400: Creating output vf... +400: Creating output volume... +400: Running native warper... +400: bspline_warp complete. +400: Back convert to original type... +400: > Convert vf to itk +400: > Conversion complete. +400: plm_warp_native is complete. +400: Saving image... +400: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd +400: Saving vf... +400: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-vf.nrrd +400: Load: 0.052012 +400: Run: 0.0225301 +400: Save: 0.424233 +400: Total: 0.498775 +400: Finished! +400: +400: STDERR: +400: Not an error +394: RETVAL: 0 +394: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha +394: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +394: Launching registration worker thread +394: Inside registration worker thread +394: Doing registration stage +394: [1] xf_in->m_type = 0, xf_out->m_type = 0 +394: RESAMPLE 1 1: (2 2 2), (2 2 2) +394: RESAMPLE 1 1: (2 2 2), (2 2 2) +394: volume_calc_grad complete. +394: bspline_xform_initialize +394: Warning: vox_per_rgn was less than 4. +394: Warning: vox_per_rgn was less than 4. +394: Warning: vox_per_rgn was less than 4. +394: rdims = (5,5,5) +394: vox_per_rgn = (4,4,4) +394: cdims = (8 8 8) +394: Algorithm flavor = g +394: Threading = 0 +394: >> Checking JH allocation +394: BSPLINE PARMS +394: max_its = 5 +394: max_feval = 5 +394: BSPLINE XFORM HEADER +394: vox_per_rgn = 4 4 4 +394: roi_offset = 0 0 0 +394: roi_dim = 19 19 19 +394: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 +394: BST METRICS +394: MET 110100 MSE 1.000000 +394: Setting nmax, mmax = 1536 41 +394: >>> START +394: This problem is unconstrained. +394: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.031 s ] +394: CMIN 0.00 CAVG 0.00 CMAX 0.00 +394: LSD 0.00 +394: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.060 s ] +394: CMIN -0.09 CAVG 0.00 CMAX 0.49 +394: LSD 1.00 +394: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.083 s ] +394: CMIN -0.46 CAVG 0.01 CMAX 2.46 +394: LSD 5.00 +394: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.058 s ] +394: CMIN -1.93 CAVG 0.04 CMAX 10.33 +394: LSD 21.00 +394: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.047 s ] +394: CMIN -14.50 CAVG 0.20 CMAX 61.00 +394: LSD 95.90 +394: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.073 s ] +394: CMIN -12.15 CAVG 0.16 CMAX 47.74 +394: LSD 26.24 +394: [2] xf_out->m_type = 9, xf_in->m_type = 0 +394: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +394: bspline_xform_initialize +394: rdims = (5,5,5) +394: vox_per_rgn = (8,8,8) +394: cdims = (8 8 8) +394: ** Registration worker thread finished. +394: Writing transformation ... +394: Warping... +394: Running: plm_warp_native +394: Converting input image... +394: Converting xform... +394: bspline_xform_initialize +394: rdims = (5,5,5) +394: vox_per_rgn = (8,8,8) +394: cdims = (8 8 8) +394: Creating output vf... +394: Creating output volume... +394: Running native warper... +394: bspline_warp complete. +394: Back convert to original type... +394: > Convert vf to itk +394: > Conversion complete. +394: plm_warp_native is complete. +394: Saving image... +394: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd +394: Saving vf... +394: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-vf.nrrd +394: Load: 0.0892549 +394: Run: 0.375288 +394: Save: 0.07424 +394: Total: 0.538783 +394: Finished! +394: +394: STDERR: +394: Not an error +406: RETVAL: 0 +406: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha +406: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +406: Launching registration worker thread +406: Inside registration worker thread +406: Doing registration stage +406: [1] xf_in->m_type = 0, xf_out->m_type = 0 +406: RESAMPLE 1 1: (2 2 2), (2 2 2) +406: RESAMPLE 1 1: (2 2 2), (2 2 2) +406: volume_calc_grad complete. +406: bspline_xform_initialize +406: Warning: vox_per_rgn was less than 4. +406: Warning: vox_per_rgn was less than 4. +406: Warning: vox_per_rgn was less than 4. +406: rdims = (5,5,5) +406: vox_per_rgn = (4,4,4) +406: cdims = (8 8 8) +406: Algorithm flavor = h +406: Threading = 0 +406: >> Checking JH allocation +406: BSPLINE PARMS +406: max_its = 5 +406: max_feval = 5 +406: BSPLINE XFORM HEADER +406: vox_per_rgn = 4 4 4 +406: roi_offset = 0 0 0 +406: roi_dim = 19 19 19 +406: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 +406: BST METRICS +406: MET 110100 MSE 1.000000 +406: Setting nmax, mmax = 1536 41 +406: >>> START +406: This problem is unconstrained. +406: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.005 s ] +406: CMIN 0.00 CAVG 0.00 CMAX 0.00 +406: LSD 0.00 +406: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.007 s ] +406: CMIN -0.09 CAVG 0.00 CMAX 0.49 +406: LSD 1.00 +406: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.003 s ] +406: CMIN -0.46 CAVG 0.01 CMAX 2.46 +406: LSD 5.00 +406: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.002 s ] +406: CMIN -1.93 CAVG 0.04 CMAX 10.33 +406: LSD 21.00 +406: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.002 s ] +406: CMIN -14.50 CAVG 0.20 CMAX 61.00 +406: LSD 95.90 +406: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.002 s ] +406: CMIN -12.15 CAVG 0.16 CMAX 47.74 +406: LSD 26.24 +406: [2] xf_out->m_type = 9, xf_in->m_type = 0 +406: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +406: bspline_xform_initialize +406: rdims = (5,5,5) +406: vox_per_rgn = (8,8,8) +406: cdims = (8 8 8) +406: ** Registration worker thread finished. +406: Writing transformation ... +406: Warping... +406: Running: plm_warp_native +406: Converting input image... +406: Converting xform... +406: bspline_xform_initialize +406: rdims = (5,5,5) +406: vox_per_rgn = (8,8,8) +406: cdims = (8 8 8) +406: Creating output vf... +406: Creating output volume... +406: Running native warper... +406: bspline_warp complete. +406: Back convert to original type... +406: > Convert vf to itk +406: > Conversion complete. +406: plm_warp_native is complete. +406: Saving image... +406: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd +406: Saving vf... +406: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-vf.nrrd +406: Load: 0.0463932 +406: Run: 0.0282319 +406: Save: 0.439203 +406: Total: 0.513828 +406: Finished! +406: +406: STDERR: +406: Not an error +397: RETVAL: 0 +397: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +397: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha +397: Launching registration worker thread +397: Inside registration worker thread +397: Doing registration stage +397: [1] xf_in->m_type = 0, xf_out->m_type = 0 +397: RESAMPLE 1 1: (2 2 2), (2 2 2) +397: RESAMPLE 1 1: (2 2 2), (2 2 2) +397: volume_calc_grad complete. +397: bspline_xform_initialize +397: Warning: vox_per_rgn was less than 4. +397: Warning: vox_per_rgn was less than 4. +397: Warning: vox_per_rgn was less than 4. +397: rdims = (5,5,5) +397: vox_per_rgn = (4,4,4) +397: cdims = (8 8 8) +397: Algorithm flavor = c +397: Threading = 0 +397: >> Checking JH allocation +397: BSPLINE PARMS +397: max_its = 5 +397: max_feval = 5 +397: BSPLINE XFORM HEADER +397: vox_per_rgn = 4 4 4 +397: roi_offset = 0 0 0 +397: roi_dim = 19 19 19 +397: img_dc = 1 0 0 0 1 0 0 0 1 +397: BST METRICS +397: MET 110100 MSE 1.000000 +397: Setting nmax, mmax = 1536 41 +397: >>> START +397: This problem is unconstrained. +397: [ 0, 0] MSE 1969.041 NV 5719 GM 151.518 GN 29 [ 0.004 s ] +397: CMIN 0.00 CAVG 0.00 CMAX 0.00 +397: LSD 0.00 +397: [ 0, 1] MSE 1948.894 NV 5719 GM 150.797 GN 28.8 [ 0.003 s ] +397: CMIN -0.42 CAVG -0.00 CMAX 0.04 +397: LSD 1.00 +397: [ 0, 2] MSE 1873.203 NV 5719 GM 152.313 GN 29.2 [ 0.003 s ] +397: CMIN -2.08 CAVG -0.02 CMAX 0.22 +397: LSD 5.00 +397: [ 0, 3] MSE 1636.132 NV 5719 GM 148.988 GN 28.8 [ 0.004 s ] +397: CMIN -8.76 CAVG -0.07 CMAX 0.93 +397: LSD 21.00 +397: [ 0, 4] MSE 1351.435 NV 5719 GM 79.113 GN 23.8 [ 0.003 s ] +397: CMIN -35.44 CAVG -0.29 CMAX 3.78 +397: LSD 85.00 +397: [ 1, 5] MSE 6291.440 NV 5719 GM -73.340 GN 33.2 [ 0.002 s ] +397: CMIN -126.28 CAVG -0.93 CMAX 14.98 +397: LSD 199.65 +397: [2] xf_out->m_type = 9, xf_in->m_type = 0 +397: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +397: bspline_xform_initialize +397: rdims = (5,5,5) +397: vox_per_rgn = (8,8,8) +397: cdims = (8 8 8) +397: ** Registration worker thread finished. +397: Writing transformation ... +397: Warping... +397: Running: plm_warp_native +397: Converting input image... +397: Converting xform... +397: bspline_xform_initialize +397: rdims = (5,5,5) +397: vox_per_rgn = (8,8,8) +397: cdims = (8 8 8) +397: Creating output vf... +397: Creating output volume... +397: Running native warper... +397: bspline_warp complete. +397: Back convert to original type... +397: > Convert vf to itk +397: > Conversion complete. +397: plm_warp_native is complete. +397: Saving image... +397: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd +397: Saving vf... +397: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-vf.nrrd +397: Load: 0.090363 +397: Run: 0.0234339 +397: Save: 0.392363 +397: Total: 0.50616 +397: Finished! +397: +397: STDERR: +397: Not an error +403: RETVAL: 0 +403: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +403: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha +403: Launching registration worker thread +403: Inside registration worker thread +403: Doing registration stage +403: [1] xf_in->m_type = 0, xf_out->m_type = 0 +403: RESAMPLE 1 1: (2 2 2), (2 2 2) +403: RESAMPLE 1 1: (2 2 2), (2 2 2) +403: volume_calc_grad complete. +403: bspline_xform_initialize +403: Warning: vox_per_rgn was less than 4. +403: Warning: vox_per_rgn was less than 4. +403: Warning: vox_per_rgn was less than 4. +403: rdims = (5,5,5) +403: vox_per_rgn = (4,4,4) +403: cdims = (8 8 8) +403: Algorithm flavor = h +403: Threading = 0 +403: >> Checking JH allocation +403: BSPLINE PARMS +403: max_its = 5 +403: max_feval = 5 +403: BSPLINE XFORM HEADER +403: vox_per_rgn = 4 4 4 +403: roi_offset = 0 0 0 +403: roi_dim = 19 19 19 +403: img_dc = 1 0 0 0 1 0 0 0 1 +403: BST METRICS +403: MET 110100 MSE 1.000000 +403: Setting nmax, mmax = 1536 41 +403: >>> START +403: This problem is unconstrained. +403: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.004 s ] +403: CMIN 0.00 CAVG 0.00 CMAX 0.00 +403: LSD 0.00 +403: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.003 s ] +403: CMIN -0.42 CAVG -0.00 CMAX 0.04 +403: LSD 1.00 +403: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.003 s ] +403: CMIN -2.08 CAVG -0.02 CMAX 0.22 +403: LSD 5.00 +403: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.003 s ] +403: CMIN -8.76 CAVG -0.07 CMAX 0.93 +403: LSD 21.00 +403: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.003 s ] +403: CMIN -35.44 CAVG -0.29 CMAX 3.78 +403: LSD 85.00 +403: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.003 s ] +403: CMIN -126.28 CAVG -0.93 CMAX 14.98 +403: LSD 199.65 +403: [2] xf_out->m_type = 9, xf_in->m_type = 0 +403: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +403: bspline_xform_initialize +403: rdims = (5,5,5) +403: vox_per_rgn = (8,8,8) +403: cdims = (8 8 8) +403: ** Registration worker thread finished. +403: Writing transformation ... +403: Warping... +403: Running: plm_warp_native +403: Converting input image... +403: Converting xform... +403: bspline_xform_initialize +403: rdims = (5,5,5) +403: vox_per_rgn = (8,8,8) +403: cdims = (8 8 8) +403: Creating output vf... +403: Creating output volume... +403: Running native warper... +403: bspline_warp complete. +403: Back convert to original type... +403: > Convert vf to itk +403: > Conversion complete. +403: plm_warp_native is complete. +403: Saving image... +403: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd +403: Saving vf... +403: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-vf.nrrd +403: Load: 0.0790811 +403: Run: 0.0355439 +403: Save: 0.395963 +403: Total: 0.510588 +403: Finished! +403: +403: STDERR: +403: Not an error +462: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +462: PARMS is resample;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-vf.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/black-1.mha +462: EXPECTED_ERRNO is +474: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +474: PARMS is thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2 +474: EXPECTED_ERRNO is +477: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +477: PARMS is thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2 +477: EXPECTED_ERRNO is +483: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +483: PARMS is intersect;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha +483: EXPECTED_ERRNO is +118/578 Test #388: plm-bsp-landmark-e .................... Passed 1.00 sec +119/578 Test #394: plm-bsp-dcos-b ........................ Passed 1.00 sec +120/578 Test #397: plm-bsp-dcos-c ........................ Passed 0.99 sec +121/578 Test #400: plm-bsp-dcos-d ........................ Passed 0.99 sec +122/578 Test #403: plm-bsp-dcos-e ........................ Passed 0.98 sec +123/578 Test #406: plm-bsp-dcos-f ........................ Passed 0.98 sec +124/578 Test #415: plm-reg-dv-itk-translation ............ Passed 0.95 sec +125/578 Test #436: plm-reg-autores-a ..................... Passed 0.62 sec +test 495 + Start 495: plm-threshold-c + +495: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +495: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +495: Test timeout computed to be: 1500 +test 501 + Start 501: plm-warp-a + +501: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +501: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +501: Test timeout computed to be: 1500 +test 504 + Start 504: plm-warp-b + +504: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +504: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +504: Test timeout computed to be: 1500 +test 509 + Start 509: plm-warp-c + +509: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +509: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +509: Test timeout computed to be: 1500 +test 512 + Start 512: plm-warp-d + +512: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +512: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +512: Test timeout computed to be: 1500 +test 515 + Start 515: plm-warp-f + +515: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +515: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +515: Test timeout computed to be: 1500 +test 518 + Start 518: plm-warp-g + +518: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +518: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +518: Test timeout computed to be: 1500 +test 521 + Start 521: plm-warp-h + +521: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +521: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +521: Test timeout computed to be: 1500 +test 524 + Start 524: plm-warp-i + +524: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +524: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +524: Test timeout computed to be: 1500 +test 527 + Start 527: plm-xf-convert-a + +527: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +527: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +527: Test timeout computed to be: 1500 +test 531 + Start 531: plm-xf-convert-d-warp-1 + +531: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +531: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +531: Test timeout computed to be: 1500 +test 534 + Start 534: plm-xf-convert-d-warp-2 + +534: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +534: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +534: Test timeout computed to be: 1500 +486: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +486: PARMS is union;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha +486: EXPECTED_ERRNO is +489: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +489: PARMS is threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha;--above;-888 +489: EXPECTED_ERRNO is +480: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +480: PARMS is thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust +480: EXPECTED_ERRNO is +492: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +492: PARMS is threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900 +492: EXPECTED_ERRNO is +444: RETVAL: 0 +444: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha +444: Finished! +444: +444: STDERR: +444: Not an error +369: RETVAL: 0 +369: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +369: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha +369: Launching registration worker thread +369: Inside registration worker thread +369: Doing registration stage +369: [1] xf_in->m_type = 0, xf_out->m_type = 0 +369: RESAMPLE 1 1: (1 1 1), (1 1 1) +369: RESAMPLE 1 1: (1 1 1), (1 1 1) +369: volume_calc_grad complete. +369: bspline_xform_initialize +369: Warning: vox_per_rgn was less than 4. +369: Warning: vox_per_rgn was less than 4. +369: Warning: vox_per_rgn was less than 4. +369: rdims = (10,10,10) +369: vox_per_rgn = (4,4,4) +369: cdims = (13 13 13) +369: Algorithm flavor = g +369: Threading = 0 +369: >> Checking JH allocation +369: BSPLINE PARMS +369: max_its = 5 +369: max_feval = 5 +369: BSPLINE XFORM HEADER +369: vox_per_rgn = 4 4 4 +369: roi_offset = 0 0 0 +369: roi_dim = 38 38 38 +369: img_dc = 1 0 0 0 1 0 0 0 1 +369: BST METRICS +369: MET 110100 MSE 1.000000 +369: Setting nmax, mmax = 6591 83 +369: >>> START +369: This problem is unconstrained. +369: [ 0, 0] MSE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.108 s ] +369: CMIN 0.00 CAVG 0.00 CMAX 0.00 +369: LSD 0.00 +369: [ 0, 1] MSE 5484.124 NV 54872 GM 0.045 GN 27.8 [ 0.086 s ] +369: CMIN -0.16 CAVG -0.00 CMAX 0.22 +369: LSD 1.00 +369: [ 0, 2] MSE 5266.236 NV 54872 GM 0.224 GN 26.4 [ 0.055 s ] +369: CMIN -0.81 CAVG 0.00 CMAX 1.12 +369: LSD 5.00 +369: [ 0, 3] MSE 4484.536 NV 54872 GM 0.928 GN 20.9 [ 0.055 s ] +369: CMIN -3.39 CAVG 0.00 CMAX 4.70 +369: LSD 21.00 +369: [ 1, 4] MSE 2493.238 NV 54872 GM 0.677 GN 15.1 [ 0.070 s ] +369: CMIN -13.49 CAVG -0.00 CMAX 18.05 +369: LSD 60.54 +369: [ 2, 5] MSE 4765.919 NV 54872 GM 81.679 GN 34.3 [ 0.052 s ] +369: CMIN -43.65 CAVG -0.01 CMAX 57.84 +369: LSD 218.24 +369: [2] xf_out->m_type = 9, xf_in->m_type = 0 +369: ** Registration worker thread finished. +369: Writing transformation ... +369: Warping... +369: Running: plm_warp_native +369: Converting input image... +369: Converting xform... +369: bspline_xform_initialize +369: rdims = (10,10,10) +369: vox_per_rgn = (4,4,4) +369: cdims = (13 13 13) +369: Creating output vf... +369: Creating output volume... +369: Running native warper... +369: bspline_warp complete. +369: Back convert to original type... +369: > Convert vf to itk +369: > Conversion complete. +369: plm_warp_native is complete. +369: Saving image... +369: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-img.mha +369: Saving vf... +369: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha +369: Load: 0.120781 +369: Run: 0.436628 +369: Save: 0.158018 +369: Total: 0.715427 +369: Finished! +369: +369: STDERR: +369: Not an error +448: RETVAL: 0 +448: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha +448: Finished! +448: +448: STDERR: +448: Not an error +495: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +495: PARMS is threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888 +495: EXPECTED_ERRNO is +501: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +501: PARMS is warp;--algorithm;itk;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha +501: EXPECTED_ERRNO is +504: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +504: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0 +504: EXPECTED_ERRNO is +509: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +509: PARMS is warp;--algorithm;itk;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0 +509: EXPECTED_ERRNO is +515: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +515: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf +515: EXPECTED_ERRNO is +524: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +524: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf +524: EXPECTED_ERRNO is +126/578 Test #369: plm-bsp-regularize-none ............... Passed 1.23 sec +127/578 Test #444: plm-compose-a ......................... Passed 0.48 sec +test 540 + Start 540: plm-xf-convert-h + +540: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +540: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +540: Test timeout computed to be: 1500 +test 543 + Start 543: plm-xf-convert-i + +543: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-i" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd;--output-type;vf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +543: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +543: Test timeout computed to be: 1500 +128/578 Test #448: plm-compose-b ......................... Passed 0.49 sec +512: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +512: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0 +512: EXPECTED_ERRNO is 391: RETVAL: 0 391: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 391: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha @@ -11109,22 +11153,22 @@ 391: Setting nmax, mmax = 1536 41 391: >>> START 391: This problem is unconstrained. -391: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.133 s ] +391: [ 0, 0] MSE 1969.037 NV 5719 GM 151.518 GN 29 [ 0.048 s ] 391: CMIN 0.00 CAVG 0.00 CMAX 0.00 391: LSD 0.00 -391: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.048 s ] +391: [ 0, 1] MSE 1948.891 NV 5719 GM 150.797 GN 28.8 [ 0.090 s ] 391: CMIN -0.42 CAVG -0.00 CMAX 0.04 391: LSD 1.00 -391: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.048 s ] +391: [ 0, 2] MSE 1873.200 NV 5719 GM 152.313 GN 29.2 [ 0.075 s ] 391: CMIN -2.08 CAVG -0.02 CMAX 0.22 391: LSD 5.00 -391: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.048 s ] +391: [ 0, 3] MSE 1636.130 NV 5719 GM 148.988 GN 28.8 [ 0.036 s ] 391: CMIN -8.76 CAVG -0.07 CMAX 0.93 391: LSD 21.00 -391: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.048 s ] +391: [ 0, 4] MSE 1351.434 NV 5719 GM 79.112 GN 23.8 [ 0.053 s ] 391: CMIN -35.44 CAVG -0.29 CMAX 3.78 391: LSD 85.00 -391: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.056 s ] +391: [ 1, 5] MSE 6291.438 NV 5719 GM -73.340 GN 33.2 [ 0.057 s ] 391: CMIN -126.28 CAVG -0.93 CMAX 14.98 391: LSD 199.65 391: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -11155,40 +11199,256 @@ 391: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd 391: Saving vf... 391: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-vf.nrrd -391: Load: 0.287723 -391: Run: 0.41964 -391: Save: 0.646739 -391: Total: 1.3541 +391: Load: 0.0895269 +391: Run: 0.382525 +391: Save: 0.256576 +391: Total: 0.728628 391: Finished! 391: 391: STDERR: -436: Not an error 391: Not an error -132/578 Test #391: plm-bsp-dcos-a ........................ Passed 2.83 sec -133/578 Test #436: plm-reg-autores-a ..................... Passed 1.38 sec -test 474 - Start 474: plm-thumbnail-a +129/578 Test #391: plm-bsp-dcos-a ........................ Passed 1.12 sec +521: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +521: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf +521: EXPECTED_ERRNO is +518: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +518: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf +518: EXPECTED_ERRNO is +527: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +527: PARMS is xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125; +527: EXPECTED_ERRNO is +459: RETVAL: 0 +459: STDOUT: Time = 0.005345 seconds +459: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha +459: +459: STDERR: +459: Not an error +test 546 + Start 546: xf-invert-vf-zero-1 -474: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -474: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -474: Test timeout computed to be: 1500 -test 477 - Start 477: plm-thumbnail-b +546: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +546: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +546: Test timeout computed to be: 1500 +test 549 + Start 549: xf-invert-vf-trans-1 -477: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -477: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -477: Test timeout computed to be: 1500 -448: RETVAL: 0 -448: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha -448: Finished! -448: -448: STDERR: -477: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -477: PARMS is thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png;--spacing;2 -477: EXPECTED_ERRNO is -474: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -474: PARMS is thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png;--spacing;2 -474: EXPECTED_ERRNO is +549: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +549: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +549: Test timeout computed to be: 1500 +534: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +534: PARMS is warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd +534: EXPECTED_ERRNO is +531: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +531: PARMS is warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd +531: EXPECTED_ERRNO is +540: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +540: PARMS is xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf +540: EXPECTED_ERRNO is +543: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +543: PARMS is xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd;--output-type;vf +543: EXPECTED_ERRNO is +99: RETVAL: 0 +99: STDOUT: Rendering DRR 0 +99: I/O time: 0.017105 sec +99: Rendering DRR 1 +99: I/O time: 0.052419 sec +99: Rendering DRR 2 +99: I/O time: 0.000436 sec +99: Rendering DRR 3 +99: I/O time: 0.000423 sec +99: Rendering DRR 4 +99: I/O time: 0.060846 sec +99: Rendering DRR 5 +99: I/O time: 0.000401 sec +99: Rendering DRR 6 +99: I/O time: 0.000457 sec +99: Rendering DRR 7 +99: I/O time: 0.023197 sec +99: Rendering DRR 8 +99: I/O time: 0.000344 sec +99: Rendering DRR 9 +99: I/O time: 0.000406 sec +99: Rendering DRR 10 +99: I/O time: 0.127897 sec +99: Rendering DRR 11 +99: I/O time: 0.129141 sec +99: Rendering DRR 12 +99: I/O time: 0.000323 sec +99: Rendering DRR 13 +99: I/O time: 0.120247 sec +99: Rendering DRR 14 +99: I/O time: 0.000767 sec +99: Rendering DRR 15 +99: I/O time: 0.000354 sec +99: Rendering DRR 16 +99: I/O time: 0.076418 sec +99: Rendering DRR 17 +99: I/O time: 0.012186 sec +99: Rendering DRR 18 +99: I/O time: 0.000370 sec +99: Rendering DRR 19 +99: I/O time: 0.000365 sec +99: Total time: 1.54597 secs +99: +99: STDERR: +99: Not an error +102: RETVAL: 0 +102: STDOUT: Rendering DRR 0 +102: I/O time: 0.000428 sec +102: Rendering DRR 1 +102: I/O time: 0.051092 sec +102: Rendering DRR 2 +102: I/O time: 0.000369 sec +102: Rendering DRR 3 +102: I/O time: 0.088546 sec +102: Rendering DRR 4 +102: I/O time: 0.000343 sec +102: Rendering DRR 5 +102: I/O time: 0.041154 sec +102: Rendering DRR 6 +102: I/O time: 0.006596 sec +102: Rendering DRR 7 +102: I/O time: 0.000361 sec +102: Rendering DRR 8 +102: I/O time: 0.000578 sec +102: Rendering DRR 9 +102: I/O time: 0.076546 sec +102: Rendering DRR 10 +102: I/O time: 0.130607 sec +102: Rendering DRR 11 +102: I/O time: 0.000427 sec +102: Rendering DRR 12 +102: I/O time: 0.113166 sec +102: Rendering DRR 13 +102: I/O time: 0.000637 sec +102: Rendering DRR 14 +102: I/O time: 0.000352 sec +102: Rendering DRR 15 +102: I/O time: 0.000400 sec +102: Rendering DRR 16 +102: I/O time: 0.026693 sec +102: Rendering DRR 17 +102: I/O time: 0.020399 sec +102: Rendering DRR 18 +102: I/O time: 0.000360 sec +102: Rendering DRR 19 +102: I/O time: 0.000342 sec +102: Total time: 1.54692 secs +102: +102: STDERR: +102: Not an error +130/578 Test #459: plm-resample-b ........................ Passed 0.39 sec +test 556 + Start 556: proton-dose-1 + +556: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +556: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +556: Test timeout computed to be: 1500 +546: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +546: PARMS is xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha +546: EXPECTED_ERRNO is +131/578 Test #99: drr-a ................................. Passed 1.89 sec +132/578 Test #102: drr-b ................................. Passed 1.86 sec +test 108 + Start 108: fdk-cpu-a + +108: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +108: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +108: Test timeout computed to be: 1500 +test 111 + Start 111: fdk-cpu-d + +111: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=fdk;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +111: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +111: Test timeout computed to be: 1500 +549: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +549: PARMS is xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10 +549: EXPECTED_ERRNO is +105: RETVAL: 0 +105: STDOUT: Rendering DRR 0 +105: I/O time: 0.018037 sec +105: Rendering DRR 1 +105: I/O time: 0.000347 sec +105: Rendering DRR 2 +105: I/O time: 0.020463 sec +105: Rendering DRR 3 +105: I/O time: 0.000995 sec +105: Rendering DRR 4 +105: I/O time: 0.000486 sec +105: Rendering DRR 5 +105: I/O time: 0.075490 sec +105: Rendering DRR 6 +105: I/O time: 0.000342 sec +105: Rendering DRR 7 +105: I/O time: 0.039667 sec +105: Rendering DRR 8 +105: I/O time: 0.000764 sec +105: Rendering DRR 9 +105: I/O time: 0.000324 sec +105: Rendering DRR 10 +105: I/O time: 0.072133 sec +105: Rendering DRR 11 +105: I/O time: 0.128085 sec +105: Rendering DRR 12 +105: I/O time: 0.148565 sec +105: Rendering DRR 13 +105: I/O time: 0.000330 sec +105: Rendering DRR 14 +105: I/O time: 0.023091 sec +105: Rendering DRR 15 +105: I/O time: 0.000376 sec +105: Rendering DRR 16 +105: I/O time: 0.060167 sec +105: Rendering DRR 17 +105: I/O time: 0.025437 sec +105: Rendering DRR 18 +105: I/O time: 0.000384 sec +105: Rendering DRR 19 +105: I/O time: 0.000343 sec +105: Total time: 1.54731 secs +105: +105: STDERR: +105: Not an error +468: RETVAL: 0 +468: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd +468: +468: STDERR: +133/578 Test #105: drr-c ................................. Passed 1.87 sec +test 559 + Start 559: proton-dose-4a + +559: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +559: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +559: Test timeout computed to be: 1500 +468: Not an error +456: RETVAL: 0 +456: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha +456: +456: STDERR: +456: Not an error +556: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +556: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt +556: EXPECTED_ERRNO is +108: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +108: PARMS is fdk;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-f;none;-a;0 19;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha +108: EXPECTED_ERRNO is +111: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +111: PARMS is fdk;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a;-X;0;-f;none;-a;0 19;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha +111: EXPECTED_ERRNO is +134/578 Test #456: plm-resample-a ........................ Passed 0.50 sec +135/578 Test #468: plm-scale-vf-a ........................ Passed 0.47 sec +test 562 + Start 562: proton-dose-4d + +562: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +562: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +562: Test timeout computed to be: 1500 +test 565 + Start 565: proton-dose-5a + +565: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +565: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +565: Test timeout computed to be: 1500 439: RETVAL: 0 439: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 439: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -11430,885 +11690,181 @@ 439: plm_warp_itk: warping... 439: Saving image... 439: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha -439: Load: 0.132027 -439: Run: 0.29412 -439: Save: 0.086338 -439: Total: 0.512485 +439: Load: 0.121991 +439: Run: 0.139185 +439: Save: 0.0540149 +439: Total: 0.315191 439: Finished! 439: 439: STDERR: -400: RETVAL: 0 -400: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha -400: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -400: Launching registration worker thread -400: Inside registration worker thread -400: Doing registration stage -400: [1] xf_in->m_type = 0, xf_out->m_type = 0 -400: RESAMPLE 1 1: (2 2 2), (2 2 2) -400: RESAMPLE 1 1: (2 2 2), (2 2 2) -400: volume_calc_grad complete. -400: bspline_xform_initialize -400: Warning: vox_per_rgn was less than 4. -400: Warning: vox_per_rgn was less than 4. -400: Warning: vox_per_rgn was less than 4. -400: rdims = (5,5,5) -400: vox_per_rgn = (4,4,4) -400: cdims = (8 8 8) -400: Algorithm flavor = c -400: Threading = 0 -400: >> Checking JH allocation -400: BSPLINE PARMS -400: max_its = 5 -400: max_feval = 5 -400: BSPLINE XFORM HEADER -400: vox_per_rgn = 4 4 4 -400: roi_offset = 0 0 0 -400: roi_dim = 19 19 19 -400: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 -400: BST METRICS -400: MET 110100 MSE 1.000000 -400: Setting nmax, mmax = 1536 41 -400: >>> START -400: This problem is unconstrained. -400: [ 0, 0] MSE 2326.658 NV 5814 GM -90.046 GN 30.1 [ 0.005 s ] -400: CMIN 0.00 CAVG 0.00 CMAX 0.00 -400: LSD 0.00 -400: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.005 s ] -400: CMIN -0.09 CAVG 0.00 CMAX 0.49 -400: LSD 1.00 -400: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.004 s ] -400: CMIN -0.46 CAVG 0.01 CMAX 2.46 -400: LSD 5.00 -400: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.005 s ] -400: CMIN -1.93 CAVG 0.04 CMAX 10.33 -400: LSD 21.00 -400: [ 1, 4] MSE 880.230 NV 5809 GM 22.704 GN 11.1 [ 0.004 s ] -400: CMIN -14.50 CAVG 0.20 CMAX 61.00 -400: LSD 95.90 -400: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.008 s ] -400: CMIN -12.15 CAVG 0.16 CMAX 47.74 -400: LSD 26.24 -400: [2] xf_out->m_type = 9, xf_in->m_type = 0 -400: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -400: bspline_xform_initialize -400: rdims = (5,5,5) -400: vox_per_rgn = (8,8,8) -400: cdims = (8 8 8) -400: ** Registration worker thread finished. -400: Writing transformation ... -400: Warping... -400: Running: plm_warp_native -400: Converting input image... -400: Converting xform... -400: bspline_xform_initialize -400: rdims = (5,5,5) -400: vox_per_rgn = (8,8,8) -400: cdims = (8 8 8) -400: Creating output vf... -400: Creating output volume... -400: Running native warper... -400: bspline_warp complete. -400: Back convert to original type... -400: > Convert vf to itk -400: > Conversion complete. -400: plm_warp_native is complete. -400: Saving image... -400: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd -400: Saving vf... -400: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-vf.nrrd -400: Load: 0.306974 -400: Run: 0.100337 -400: Save: 0.761462 -400: Total: 1.16877 -400: Finished! -400: -400: STDERR: -400: Not an error -448: Not an error -134/578 Test #400: plm-bsp-dcos-d ........................ Passed 2.41 sec -test 480 - Start 480: plm-thumbnail-c - -480: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -480: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -480: Test timeout computed to be: 1500 -135/578 Test #448: plm-compose-b ......................... Passed 0.81 sec -test 483 - Start 483: plm-intersect - -483: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=intersect;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -483: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -483: Test timeout computed to be: 1500 -480: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -480: PARMS is thumbnail;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png;--spacing;2;--auto-adjust -480: EXPECTED_ERRNO is 439: Not an error -136/578 Test #439: plm-reg-autores-b ..................... Passed 1.52 sec -test 486 - Start 486: plm-union - -486: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=union;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -486: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -486: Test timeout computed to be: 1500 -486: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -486: PARMS is union;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha -486: EXPECTED_ERRNO is -456: RETVAL: 0 -456: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha -456: -456: STDERR: -456: Not an error -483: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -483: PARMS is intersect;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11-roi.mha -483: EXPECTED_ERRNO is -137/578 Test #456: plm-resample-a ........................ Passed 0.75 sec -test 489 - Start 489: plm-threshold-a - -489: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha;--above;-888" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -489: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -489: Test timeout computed to be: 1500 -444: RETVAL: 0 -444: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha -444: Finished! -444: -444: STDERR: -444: Not an error -138/578 Test #444: plm-compose-a ......................... Passed 1.03 sec -test 492 - Start 492: plm-threshold-b - -492: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -492: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -492: Test timeout computed to be: 1500 -489: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -489: PARMS is threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha;--above;-888 -489: EXPECTED_ERRNO is -468: RETVAL: 0 -468: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd -468: -468: STDERR: -468: Not an error -462: RETVAL: 0 -462: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha -462: -462: STDERR: -462: Not an error -139/578 Test #468: plm-scale-vf-a ........................ Passed 0.64 sec -test 495 - Start 495: plm-threshold-c - -495: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -495: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -495: Test timeout computed to be: 1500 -492: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -492: PARMS is threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha;--below;-900 -492: EXPECTED_ERRNO is -140/578 Test #462: plm-resample-c ........................ Passed 0.70 sec -test 501 - Start 501: plm-warp-a - -501: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -501: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -501: Test timeout computed to be: 1500 -406: RETVAL: 0 -406: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-5.mha -406: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -406: Launching registration worker thread -406: Inside registration worker thread -406: Doing registration stage -406: [1] xf_in->m_type = 0, xf_out->m_type = 0 -406: RESAMPLE 1 1: (2 2 2), (2 2 2) -406: RESAMPLE 1 1: (2 2 2), (2 2 2) -406: volume_calc_grad complete. -406: bspline_xform_initialize -406: Warning: vox_per_rgn was less than 4. -406: Warning: vox_per_rgn was less than 4. -406: Warning: vox_per_rgn was less than 4. -406: rdims = (5,5,5) -406: vox_per_rgn = (4,4,4) -406: cdims = (8 8 8) -406: Algorithm flavor = h -406: Threading = 0 -406: >> Checking JH allocation -406: BSPLINE PARMS -406: max_its = 5 -406: max_feval = 5 -406: BSPLINE XFORM HEADER -406: vox_per_rgn = 4 4 4 -406: roi_offset = 0 0 0 -406: roi_dim = 19 19 19 -406: img_dc = 0.894427 0.447214 0 -0.447214 0.894427 0 0 0 1 -406: BST METRICS -406: MET 110100 MSE 1.000000 -406: Setting nmax, mmax = 1536 41 -406: >>> START -406: This problem is unconstrained. -406: [ 0, 0] MSE 2326.657 NV 5814 GM -90.046 GN 30.1 [ 0.004 s ] -406: CMIN 0.00 CAVG 0.00 CMAX 0.00 -406: LSD 0.00 -406: [ 0, 1] MSE 2292.385 NV 5814 GM -88.991 GN 29.8 [ 0.004 s ] -406: CMIN -0.09 CAVG 0.00 CMAX 0.49 -406: LSD 1.00 -406: [ 0, 2] MSE 2160.182 NV 5814 GM -88.027 GN 29.4 [ 0.004 s ] -406: CMIN -0.46 CAVG 0.01 CMAX 2.46 -406: LSD 5.00 -406: [ 0, 3] MSE 1684.673 NV 5814 GM -70.229 GN 24.2 [ 0.012 s ] -406: CMIN -1.93 CAVG 0.04 CMAX 10.33 -406: LSD 21.00 -406: [ 1, 4] MSE 880.232 NV 5809 GM 22.704 GN 11.1 [ 0.004 s ] -406: CMIN -14.50 CAVG 0.20 CMAX 61.00 -406: LSD 95.90 -406: [ 2, 5] MSE 621.998 NV 5814 GM 5.047 GN 4.55 [ 0.012 s ] -406: CMIN -12.15 CAVG 0.16 CMAX 47.74 -406: LSD 26.24 -406: [2] xf_out->m_type = 9, xf_in->m_type = 0 -406: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -406: bspline_xform_initialize -406: rdims = (5,5,5) -406: vox_per_rgn = (8,8,8) -406: cdims = (8 8 8) -406: ** Registration worker thread finished. -406: Writing transformation ... -406: Warping... -406: Running: plm_warp_native -406: Converting input image... -406: Converting xform... -406: bspline_xform_initialize -406: rdims = (5,5,5) -406: vox_per_rgn = (8,8,8) -406: cdims = (8 8 8) -406: Creating output vf... -406: Creating output volume... -406: Running native warper... -406: bspline_warp complete. -406: Back convert to original type... -406: > Convert vf to itk -406: > Conversion complete. -406: plm_warp_native is complete. -406: Saving image... -406: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd -406: Saving vf... -406: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-vf.nrrd -406: Load: 0.159227 -406: Run: 0.0683088 -406: Save: 0.787396 -406: Total: 1.01493 -406: Finished! -406: -406: STDERR: -406: Not an error -459: RETVAL: 0 -459: STDOUT: Time = 0.047783 seconds -459: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha -459: -459: STDERR: -459: Not an error -141/578 Test #406: plm-bsp-dcos-f ........................ Passed 2.60 sec -142/578 Test #459: plm-resample-b ........................ Passed 0.83 sec -test 504 - Start 504: plm-warp-b - -504: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -504: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -504: Test timeout computed to be: 1500 -test 509 - Start 509: plm-warp-c - -509: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--algorithm;itk;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -509: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -509: Test timeout computed to be: 1500 -501: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -501: PARMS is warp;--algorithm;itk;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha -501: EXPECTED_ERRNO is -495: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -495: PARMS is threshold;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha;--range;-900,-888 -495: EXPECTED_ERRNO is -504: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -504: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha;--default-value;0 -504: EXPECTED_ERRNO is -509: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -509: PARMS is warp;--algorithm;itk;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha;--interpolation;nn;--default-value;0 -509: EXPECTED_ERRNO is -474: RETVAL: 0 -474: STDOUT: Time = 0.000469 seconds -474: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png -474: -474: STDERR: -474: Not an error -143/578 Test #474: plm-thumbnail-a ....................... Passed 0.57 sec -test 512 - Start 512: plm-warp-d - -512: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -512: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -512: Test timeout computed to be: 1500 -512: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -512: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt;--output-vf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha;--interpolation;nn;--default-value;0 -512: EXPECTED_ERRNO is -452: RETVAL: 0 -452: STDOUT: bspline_xform_initialize -452: rdims = (2,2,2) -452: vox_per_rgn = (22,22,22) -452: cdims = (5 5 5) -452: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha -452: Finished! -452: -452: STDERR: -452: Not an error -144/578 Test #452: plm-compose-c ......................... Passed 1.15 sec -test 515 - Start 515: plm-warp-f - -515: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -515: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -515: Test timeout computed to be: 1500 465: RETVAL: 0 465: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd 465: 465: STDERR: -465: Not an error -145/578 Test #465: plm-scale-a ........................... Passed 0.97 sec -test 518 - Start 518: plm-warp-g +474: RETVAL: 0 +474: STDOUT: Time = 0.003734 seconds +474: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png +474: +474: STDERR: +559: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +559: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt +559: EXPECTED_ERRNO is +483: RETVAL: 0 +483: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha +483: +483: STDERR: +136/578 Test #439: plm-reg-autores-b ..................... Passed 0.67 sec +test 568 + Start 568: proton-dose-5d -518: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -518: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -518: Test timeout computed to be: 1500 -515: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -515: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd;--default-value;0;--harden-linear-xf -515: EXPECTED_ERRNO is -518: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -518: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd;--default-value;0;--resample-linear-xf -518: EXPECTED_ERRNO is +568: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +568: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +568: Test timeout computed to be: 1500 +562: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +562: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt +562: EXPECTED_ERRNO is +565: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +565: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt +565: EXPECTED_ERRNO is +495: RETVAL: 0 +495: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha +495: +495: STDERR: 477: RETVAL: 0 -477: STDOUT: Time = 0.000394 seconds +477: STDOUT: Time = 0.002403 seconds 477: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png 477: 477: STDERR: -477: Not an error -146/578 Test #477: plm-thumbnail-b ....................... Passed 0.80 sec -test 521 - Start 521: plm-warp-h +465: Not an error +137/578 Test #465: plm-scale-a ........................... Passed 0.59 sec +test 571 + Start 571: proton-dose-6a -521: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -521: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -521: Test timeout computed to be: 1500 -412: RETVAL: 0 -412: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -412: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha -412: Launching registration worker thread -412: Inside registration worker thread -412: Doing registration stage -412: [1] xf_in->m_type = 0, xf_out->m_type = 0 -412: RESAMPLE 1 1: (4 4 4), (4 4 4) -412: RESAMPLE 1 1: (4 4 4), (4 4 4) -412: volume_calc_grad complete. -412: bspline_xform_initialize -412: Warning: vox_per_rgn was less than 4. -412: Warning: vox_per_rgn was less than 4. -412: Warning: vox_per_rgn was less than 4. -412: rdims = (3,3,3) -412: vox_per_rgn = (4,4,4) -412: cdims = (6 6 6) -412: Algorithm flavor = g -412: Threading = 0 -412: >> Checking JH allocation -412: BSPLINE PARMS -412: max_its = 20 -412: max_feval = 20 -412: BSPLINE XFORM HEADER -412: vox_per_rgn = 4 4 4 -412: roi_offset = 0 0 0 -412: roi_dim = 9 9 9 -412: img_dc = 1 0 0 0 1 0 0 0 1 -412: BST METRICS -412: MET 110100 MSE 1.000000 -412: Setting nmax, mmax = 648 27 -412: >>> START -412: This problem is unconstrained. -412: [ 0, 0] MSE 1310.066 NV 729 GM 32.312 GN 10.8 [ 0.054 s ] -412: CMIN 0.00 CAVG 0.00 CMAX 0.00 -412: LSD 0.00 -412: [ 0, 1] MSE 1295.068 NV 729 GM 32.107 GN 10.8 [ 0.047 s ] -412: CMIN -0.80 CAVG -0.00 CMAX 0.03 -412: LSD 1.00 -412: [ 0, 2] MSE 1236.886 NV 729 GM 31.289 GN 10.5 [ 0.036 s ] -412: CMIN -3.98 CAVG -0.02 CMAX 0.14 -412: LSD 5.00 -412: [ 0, 3] MSE 1033.121 NV 729 GM 28.011 GN 9.4 [ 0.032 s ] -412: CMIN -16.73 CAVG -0.10 CMAX 0.57 -412: LSD 21.00 -412: [ 1, 4] MSE 1227.425 NV 729 GM -31.287 GN 10.6 [ 0.040 s ] -412: CMIN -130.39 CAVG -0.75 CMAX 15.78 -412: LSD 145.43 -412: [ 1, 5] MSE 666.262 NV 729 GM 16.009 GN 5.49 [ 0.024 s ] -412: CMIN -63.32 CAVG -0.36 CMAX 6.81 -412: LSD 59.61 -412: [ 2, 6] MSE 1232.974 NV 729 GM -31.573 GN 10.6 [ 0.020 s ] -412: CMIN -133.31 CAVG -0.76 CMAX 26.37 -412: LSD 96.76 -412: [ 2, 7] MSE 663.364 NV 729 GM -16.837 GN 5.81 [ 0.020 s ] -412: CMIN -74.19 CAVG -0.42 CMAX 9.85 -412: LSD 15.03 -412: [ 3, 8] MSE 654.961 NV 729 GM -10.617 GN 3.9 [ 0.024 s ] -412: CMIN -69.17 CAVG -0.40 CMAX 9.75 -412: LSD 6.20 -412: [ 4, 9] MSE 648.056 NV 729 GM 16.849 GN 5.74 [ 0.032 s ] -412: CMIN -59.17 CAVG -0.35 CMAX 12.07 -412: LSD 13.05 -412: [ 4, 10] MSE 648.518 NV 729 GM 6.481 GN 2.37 [ 0.016 s ] -412: CMIN -64.64 CAVG -0.37 CMAX 10.80 -412: LSD 5.91 -412: [ 5, 11] MSE 642.586 NV 729 GM -2.800 GN 1.61 [ 0.032 s ] -412: CMIN -65.72 CAVG -0.38 CMAX 12.16 -412: LSD 3.39 -412: [ 6, 12] MSE 621.446 NV 729 GM -3.050 GN 1.62 [ 0.012 s ] -412: CMIN -65.92 CAVG -0.39 CMAX 17.36 -412: LSD 11.87 -412: [ 6, 13] MSE 550.866 NV 729 GM -6.628 GN 2.45 [ 0.024 s ] -412: CMIN -66.69 CAVG -0.41 CMAX 38.13 -412: LSD 59.33 -412: [ 7, 14] MSE 512.605 NV 729 GM -3.857 GN 1.62 [ 0.041 s ] -412: CMIN -62.22 CAVG -0.42 CMAX 47.82 -412: LSD 24.85 -412: [ 7, 15] MSE 447.450 NV 729 GM 1.527 GN 1.38 [ 0.027 s ] -412: CMIN -86.57 CAVG -0.48 CMAX 86.57 -412: LSD 124.23 -412: [ 7, 16] MSE 464.351 NV 729 GM 2.120 GN 1.3 [ 0.020 s ] -412: CMIN -65.28 CAVG -0.45 CMAX 65.28 -412: LSD 69.63 -412: [ 8, 17] MSE 472.701 NV 729 GM -6.632 GN 2.42 [ 0.023 s ] -412: CMIN -65.88 CAVG -0.45 CMAX 65.88 -412: LSD 10.76 -412: [ 8, 18] MSE 465.428 NV 729 GM 2.619 GN 1.34 [ 0.048 s ] -412: CMIN -65.36 CAVG -0.45 CMAX 65.36 -412: LSD 1.50 -412: [ 8, 19] MSE 464.475 NV 729 GM 2.117 GN 1.3 [ 0.016 s ] -412: CMIN -65.29 CAVG -0.45 CMAX 65.29 -412: LSD 0.17 -412: [ 8, 20] MSE 464.365 NV 729 GM 2.120 GN 1.3 [ 0.032 s ] -412: CMIN -65.28 CAVG -0.45 CMAX 65.28 -412: LSD 0.02 -412: [2] xf_out->m_type = 9, xf_in->m_type = 0 -412: Doing registration stage -412: [1] xf_in->m_type = 9, xf_out->m_type = 0 -412: RESAMPLE 1 1: (1 1 1), (1 1 1) -412: RESAMPLE 1 1: (1 1 1), (1 1 1) -412: volume_calc_grad complete. -412: bspline_xform_initialize -412: Warning: vox_per_rgn was less than 4. -412: Warning: vox_per_rgn was less than 4. -412: Warning: vox_per_rgn was less than 4. -412: rdims = (10,10,10) -412: vox_per_rgn = (4,4,4) -412: cdims = (13 13 13) -412: Algorithm flavor = g -412: Threading = 0 -412: >> Checking JH allocation -412: BSPLINE PARMS -412: max_its = 20 -412: max_feval = 20 -412: BSPLINE XFORM HEADER -412: vox_per_rgn = 4 4 4 -412: roi_offset = 0 0 0 -412: roi_dim = 38 38 38 -412: img_dc = 1 0 0 0 1 0 0 0 1 -412: BST METRICS -412: MET 110100 MSE 1.000000 -412: Setting nmax, mmax = 6591 83 -412: >>> START -412: This problem is unconstrained. -412: [ 0, 0] MSE 2187.416 NV 54548 GM -54.885 GN 20.1 [ 0.025 s ] -412: CMIN -34.32 CAVG -2.98 CMAX 34.99 -412: LSD 0.00 -412: [ 0, 1] MSE 2164.676 NV 54548 GM -53.547 GN 19.7 [ 0.024 s ] -412: CMIN -34.32 CAVG -2.98 CMAX 34.99 -412: LSD 1.00 -412: [ 0, 2] MSE 2077.643 NV 54548 GM -48.153 GN 18.1 [ 0.018 s ] -412: CMIN -34.32 CAVG -2.98 CMAX 34.99 -412: LSD 5.00 -412: [ 1, 3] MSE 1531.465 NV 54548 GM -5.028 GN 6.72 [ 0.015 s ] -412: CMIN -34.32 CAVG -2.97 CMAX 34.99 -412: LSD 49.50 -412: [ 2, 4] MSE 1454.329 NV 54548 GM 33.264 GN 9.36 [ 0.043 s ] -412: CMIN -34.74 CAVG -2.96 CMAX 34.99 -412: LSD 27.82 -412: [ 3, 5] MSE 1285.873 NV 54548 GM 41.621 GN 9.3 [ 0.019 s ] -412: CMIN -38.62 CAVG -2.96 CMAX 34.99 -412: LSD 33.32 -412: [ 4, 6] MSE 601.694 NV 54548 GM -58.120 GN 12.7 [ 0.020 s ] -412: CMIN -66.67 CAVG -3.01 CMAX 47.45 -412: LSD 225.15 -412: [ 5, 7] MSE 543.836 NV 54548 GM 31.901 GN 9.57 [ 0.029 s ] -412: CMIN -66.22 CAVG -2.99 CMAX 59.99 -412: LSD 53.14 -412: [ 6, 8] MSE 418.242 NV 54548 GM 12.804 GN 3.31 [ 0.035 s ] -412: CMIN -65.97 CAVG -3.00 CMAX 53.84 -412: LSD 23.35 -412: [ 7, 9] MSE 404.446 NV 54548 GM -9.046 GN 2.82 [ 0.022 s ] -412: CMIN -67.92 CAVG -3.00 CMAX 54.77 -412: LSD 12.26 -412: [ 8, 10] MSE 385.397 NV 54548 GM -5.940 GN 2.61 [ 0.018 s ] -412: CMIN -68.58 CAVG -3.00 CMAX 55.54 -412: LSD 8.37 -412: [ 9, 11] MSE 330.971 NV 54548 GM -28.234 GN 4.05 [ 0.028 s ] -412: CMIN -72.02 CAVG -3.01 CMAX 62.09 -412: LSD 44.90 -412: [10, 12] MSE 292.026 NV 54548 GM -5.908 GN 2.66 [ 0.018 s ] -412: CMIN -74.57 CAVG -3.00 CMAX 67.66 -412: LSD 33.62 -412: [11, 13] MSE 251.369 NV 54548 GM 4.024 GN 2.37 [ 0.019 s ] -412: CMIN -84.98 CAVG -2.99 CMAX 73.83 -412: LSD 50.34 -412: [12, 14] MSE 228.758 NV 54548 GM 11.643 GN 4.01 [ 0.014 s ] -412: CMIN -98.90 CAVG -2.97 CMAX 76.10 -412: LSD 60.96 -412: [13, 15] MSE 306.308 NV 54548 GM 49.796 GN 7.96 [ 0.020 s ] -412: CMIN -130.24 CAVG -2.94 CMAX 83.22 -412: LSD 135.53 -412: [13, 16] MSE 226.800 NV 54548 GM 20.941 GN 4.12 [ 0.026 s ] -412: CMIN -103.93 CAVG -2.96 CMAX 76.84 -412: LSD 21.75 -412: [14, 17] MSE 205.578 NV 54548 GM 24.444 GN 3.6 [ 0.011 s ] -412: CMIN -117.55 CAVG -2.96 CMAX 78.37 -412: LSD 53.89 -412: [15, 18] MSE 158.105 NV 54548 GM 6.383 GN 1.69 [ 0.013 s ] -412: CMIN -116.51 CAVG -2.96 CMAX 72.95 -412: LSD 24.10 -412: [16, 19] MSE 139.232 NV 54548 GM -1.923 GN 1.28 [ 0.020 s ] -412: CMIN -119.83 CAVG -2.96 CMAX 72.22 -412: LSD 15.80 -412: [17, 20] MSE 119.453 NV 54548 GM -6.009 GN 1.45 [ 0.014 s ] -412: CMIN -128.50 CAVG -2.96 CMAX 71.16 -412: LSD 33.91 -412: [2] xf_out->m_type = 9, xf_in->m_type = 9 -412: ** Registration worker thread finished. -412: Warping... -412: Running: plm_warp_native -412: Converting input image... -412: Converting xform... -412: bspline_xform_initialize -412: rdims = (10,10,10) -412: vox_per_rgn = (4,4,4) -412: cdims = (13 13 13) -412: Creating output volume... -412: Running native warper... -412: bspline_warp complete. -412: Back convert to original type... -412: plm_warp_native is complete. -412: Saving image... -412: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd -412: Load: 0.140452 -412: Run: 1.18752 -412: Save: 0.119238 -412: Total: 1.44721 -412: Finished! -412: -412: STDERR: -412: Not an error +571: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +571: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +571: Test timeout computed to be: 1500 486: RETVAL: 0 486: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha 486: 486: STDERR: -486: Not an error -147/578 Test #412: plm-reg-multi-b ....................... Passed 2.78 sec -148/578 Test #486: plm-union ............................. Passed 0.65 sec -test 524 - Start 524: plm-warp-i - -524: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -524: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -524: Test timeout computed to be: 1500 -test 527 - Start 527: plm-xf-convert-a - -527: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -527: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -527: Test timeout computed to be: 1500 -521: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -521: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-ushort-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-img.nrrd;--default-value;0;--resample-linear-xf -521: EXPECTED_ERRNO is -489: RETVAL: 0 -489: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha -489: -489: STDERR: -489: Not an error -149/578 Test #489: plm-threshold-a ....................... Passed 0.60 sec -test 531 - Start 531: plm-xf-convert-d-warp-1 - -531: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -531: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -531: Test timeout computed to be: 1500 +518: RETVAL: 0 +518: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm) +518: Setting PIH from M_IMG +518: PIH is: +518: Origin = -243.4211 -243.4211 -243.4211 +518: Size = 38 38 38 +518: Spacing = 13.1579 13.1579 13.1579 +518: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +518: Rt_study_warp: Warping m_img +518: plm_warp_itk: xform_to_itk_vf +518: plm_warp_itk: convert_to_itk +518: plm_warp_itk: warping... +518: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd) +518: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd +518: Rt_study_warp: warp and save ss. +518: Finished! +518: +518: STDERR: +462: RETVAL: 0 +462: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha +462: +462: STDERR: +527: RETVAL: 0 +527: STDOUT: bspline_xform_initialize +527: rdims = (1,1,1) +527: vox_per_rgn = (4,4,4) +527: cdims = (4 4 4) +527: about to xform_convert +527: Converting to (itk) vector field +527: did xform_convert +527: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha +527: +527: STDERR: +543: RETVAL: 0 +543: STDOUT: bspline_xform_initialize +543: rdims = (1,1,1) +543: vox_per_rgn = (4,4,4) +543: cdims = (4 4 4) +543: about to xform_convert +543: Converting to (itk) vector field +543: did xform_convert +543: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd +543: +543: STDERR: 480: RETVAL: 0 -480: STDOUT: Time = 0.000218 seconds +480: STDOUT: Time = 0.008435 seconds 480: Auto-adjusting intensities... 480: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png 480: 480: STDERR: -480: Not an error -524: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -524: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-double-1.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-img.nrrd;--default-value;0;--resample-linear-xf -524: EXPECTED_ERRNO is -150/578 Test #480: plm-thumbnail-c ....................... Passed 0.80 sec -test 534 - Start 534: plm-xf-convert-d-warp-2 - -534: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -534: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -534: Test timeout computed to be: 1500 -527: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -527: PARMS is xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125; -527: EXPECTED_ERRNO is -531: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -531: PARMS is warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd -531: EXPECTED_ERRNO is -495: RETVAL: 0 -495: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha -495: -495: STDERR: -495: Not an error -534: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -534: PARMS is warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd -534: EXPECTED_ERRNO is -151/578 Test #495: plm-threshold-c ....................... Passed 0.58 sec -test 540 - Start 540: plm-xf-convert-h - -540: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -540: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -540: Test timeout computed to be: 1500 -492: RETVAL: 0 -492: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha -492: -492: STDERR: -492: Not an error -152/578 Test #492: plm-threshold-b ....................... Passed 0.70 sec -test 543 - Start 543: plm-xf-convert-i - -543: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-i" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd;--output-type;vf" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -543: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -543: Test timeout computed to be: 1500 -540: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -540: PARMS is xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--output-type;vf -540: EXPECTED_ERRNO is +568: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +568: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt +568: EXPECTED_ERRNO is 504: RETVAL: 0 504: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) -504: bspline_xform_initialize -504: rdims = (3,3,3) -504: vox_per_rgn = (15,15,15) -504: cdims = (6 6 6) -504: Setting PIH from XFORM -504: PIH is: -504: Origin = -25.0000 -25.0000 -25.0000 -504: Size = 38 38 38 -504: Spacing = 1.3158 1.3158 1.3158 -504: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -504: Rt_study_warp: Warping m_img -504: Running: plm_warp_native -504: Converting input image... -504: Converting xform... -504: bspline_xform_initialize -504: rdims = (3,3,3) -504: vox_per_rgn = (15,15,15) -504: cdims = (6 6 6) -504: Creating output vf... -504: Creating output volume... -504: Running native warper... -504: bspline_warp complete. -504: Back convert to original type... -504: > Convert vf to itk -504: > Conversion complete. -504: plm_warp_native is complete. -504: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha) -504: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha -504: Rt_study_warp: Saving vf. -504: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha -504: Rt_study_warp: warp and save ss. -504: Finished! -504: -504: STDERR: -504: Not an error -153/578 Test #504: plm-warp-b ............................ Passed 0.64 sec -test 546 - Start 546: xf-invert-vf-zero-1 - -546: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -546: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -546: Test timeout computed to be: 1500 -543: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -543: PARMS is xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-1.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd;--output-type;vf -543: EXPECTED_ERRNO is -483: RETVAL: 0 -483: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha -483: -483: STDERR: -483: Not an error -154/578 Test #483: plm-intersect ......................... Passed 0.92 sec -test 549 - Start 549: xf-invert-vf-trans-1 - -549: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -549: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -549: Test timeout computed to be: 1500 -546: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -546: PARMS is xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha -546: EXPECTED_ERRNO is -549: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -549: PARMS is xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--fixed;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha;--iterations;10 -549: EXPECTED_ERRNO is -512: RETVAL: 0 -512: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) -512: bspline_xform_initialize -512: rdims = (3,3,3) -512: vox_per_rgn = (15,15,15) -512: cdims = (6 6 6) -512: Setting PIH from XFORM -512: PIH is: -512: Origin = -25.0000 -25.0000 -25.0000 -512: Size = 38 38 38 -512: Spacing = 1.3158 1.3158 1.3158 -512: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -512: Rt_study_warp: Warping m_img -512: Running: plm_warp_native -512: Converting input image... -512: Converting xform... -512: bspline_xform_initialize -512: rdims = (3,3,3) -512: vox_per_rgn = (15,15,15) -512: cdims = (6 6 6) -512: Creating output vf... -512: Creating output volume... -512: Running native warper... -512: bspline_warp complete. -512: Back convert to original type... -512: > Convert vf to itk -512: > Conversion complete. -512: plm_warp_native is complete. -512: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha) -512: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha -512: Rt_study_warp: Saving vf. -512: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha -512: Rt_study_warp: warp and save ss. -512: Finished! -512: -512: STDERR: -512: Not an error -155/578 Test #512: plm-warp-d ............................ Passed 0.64 sec -test 556 - Start 556: proton-dose-1 - -556: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -556: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -556: Test timeout computed to be: 1500 -501: RETVAL: 0 -501: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) -501: bspline_xform_initialize -501: rdims = (3,3,3) -501: vox_per_rgn = (15,15,15) -501: cdims = (6 6 6) -501: Setting PIH from XFORM -501: PIH is: -501: Origin = -25.0000 -25.0000 -25.0000 -501: Size = 38 38 38 -501: Spacing = 1.3158 1.3158 1.3158 -501: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -501: Rt_study_warp: Warping m_img -501: plm_warp_itk: xform_to_itk_vf -501: plm_warp_itk: convert_to_itk -501: plm_warp_itk: warping... -501: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha) -501: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha -501: Rt_study_warp: Saving vf. -501: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha -501: Rt_study_warp: warp and save ss. -501: Finished! -501: -501: STDERR: -501: Not an error -156/578 Test #501: plm-warp-a ............................ Passed 0.84 sec -test 559 - Start 559: proton-dose-4a - -559: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -559: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -559: Test timeout computed to be: 1500 -556: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -556: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.txt -556: EXPECTED_ERRNO is -515: RETVAL: 0 -515: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm) -515: Setting PIH from M_IMG -515: PIH is: -515: Origin = -243.4211 -243.4211 -243.4211 -515: Size = 38 38 38 -515: Spacing = 13.1579 13.1579 13.1579 -515: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -515: Rt_study_warp: Warping m_img -515: plm_warp_itk: xform_to_itk_vf -515: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd) -515: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd -515: Rt_study_warp: warp and save ss. -515: Finished! -515: -515: STDERR: -515: Not an error -157/578 Test #515: plm-warp-f ............................ Passed 0.61 sec -test 562 - Start 562: proton-dose-4d - -562: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -562: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -562: Test timeout computed to be: 1500 -111: RETVAL: 0 -111: STDOUT: Reconstructing... -111: Processing image 0 -111: Processing image 1 -111: Processing image 2 -111: Processing image 3 -111: Processing image 4 -111: Processing image 5 -111: Processing image 6 -111: Processing image 7 -111: Processing image 8 -111: Processing image 9 -111: Processing image 10 -111: Processing image 11 -111: Processing image 12 -111: Processing image 13 -111: Processing image 14 -111: Processing image 15 -111: Processing image 16 -111: Processing image 17 -111: Processing image 18 -111: Processing image 19 -111: I/O time (total) = 0.00920129 -111: I/O time (per image) = 0.000460064 -111: Filter time = 0 -111: Filter time (per image) = 0 -111: Backprojection time = 6.5469 -111: Backprojection time (per image) = 0.327345 -111: Writing output volume(s)... -111: done. -111: -111: -111: STDERR: -111: Not an error -562: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -562: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.txt -562: EXPECTED_ERRNO is -559: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -559: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.txt -559: EXPECTED_ERRNO is -158/578 Test #111: fdk-cpu-d ............................. Passed 7.50 sec -test 565 - Start 565: proton-dose-5a +504: bspline_xform_initialize +504: rdims = (3,3,3) +504: vox_per_rgn = (15,15,15) +504: cdims = (6 6 6) +504: Setting PIH from XFORM +504: PIH is: +504: Origin = -25.0000 -25.0000 -25.0000 +504: Size = 38 38 38 +504: Spacing = 1.3158 1.3158 1.3158 +504: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +504: Rt_study_warp: Warping m_img +504: Running: plm_warp_native +504: Converting input image... +504: Converting xform... +504: bspline_xform_initialize +504: rdims = (3,3,3) +504: vox_per_rgn = (15,15,15) +504: cdims = (6 6 6) +504: Creating output vf... +504: Creating output volume... +504: Running native warper... +504: bspline_warp complete. +504: Back convert to original type... +504: > Convert vf to itk +504: > Conversion complete. +504: plm_warp_native is complete. +504: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha) +504: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha +504: Rt_study_warp: Saving vf. +504: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha +504: Rt_study_warp: warp and save ss. +504: Finished! +504: +504: STDERR: +486: Not an error +138/578 Test #486: plm-union ............................. Passed 0.47 sec +test 39 + Start 39: rect-10 -565: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -565: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -565: Test timeout computed to be: 1500 +39: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +39: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +39: Test timeout computed to be: 1500 +492: RETVAL: 0 +492: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha +492: +492: STDERR: +571: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +571: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt +571: EXPECTED_ERRNO is +452: RETVAL: 0 +452: STDOUT: bspline_xform_initialize +452: rdims = (2,2,2) +452: vox_per_rgn = (22,22,22) +452: cdims = (5 5 5) +452: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha +452: Finished! +452: +452: STDERR: +489: RETVAL: 0 +489: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha +489: +489: STDERR: 524: RETVAL: 0 524: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt) 524: Setting PIH from M_IMG @@ -12327,14 +11883,68 @@ 524: Finished! 524: 524: STDERR: -524: Not an error -159/578 Test #524: plm-warp-i ............................ Passed 0.50 sec -test 568 - Start 568: proton-dose-5d - -568: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -568: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -568: Test timeout computed to be: 1500 +298: RETVAL: 0 +298: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +298: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +298: Launching registration worker thread +298: Inside registration worker thread +298: Doing registration stage +298: [1] xf_in->m_type = 0, xf_out->m_type = 0 +298: Fixed image for this stage: +298: Dim = 38 38 38 +298: Origin = -25 -25 -25 +298: Spacing = 1.31579 1.31579 1.31579 +298: Direction Cosines = +298: 1 0 0 +298: 0 1 0 +298: 0 0 1 +298: Moving image for this stage: +298: Dim = 38 38 38 +298: Origin = -25 -25 -25 +298: Spacing = 1.31579 1.31579 1.31579 +298: Direction Cosines = +298: 1 0 0 +298: 0 1 0 +298: 0 0 1 +298: Starting ITK registration +298: StartEvent: +298: MSE [ 0, 0] 18945.891 [ 0.094 secs] +298: MSE [ 0, 1] 18140.496 [ 0.122 secs] +298: MSE [ 0, 2] 14979.440 [ 0.075 secs] +298: MSE [ 0, 3] 5390.861 [ 0.106 secs] +298: MSE [ 0, 4,319.84] 5390.861 * +298: MSE [ 1, 5] 4259.522 [ 0.066 secs] +298: MSE [ 1, 6,313.58] 4259.522 -1131.34 * +298: MSE [ 2, 7] 465.644 [ 0.065 secs] +298: MSE [ 2, 8,36.78] 465.644 -3793.88 * +298: MSE [ 3, 9] 382.530 [ 0.079 secs] +298: MSE [ 3, 10,21.77] 382.530 -83.11 * +298: MSE [ 4, 11] 289.494 [ 0.077 secs] +298: MSE [ 4, 12,13.35] 289.494 -93.04 * +298: MSE [ 5, 13] 226.103 [ 0.068 secs] +298: MSE [ 5, 14,21.50] 226.103 -63.39 * +298: EndEvent: +298: Too many iterations. Iterations = 6 +298: LBFGSBOptimizer: +298: ITK registration complete +298: [2] xf_out->m_type = 6, xf_in->m_type = 0 +298: ** Registration worker thread finished. +298: Writing transformation ... +298: Warping... +298: plm_warp_itk: xform_to_itk_vf +298: plm_warp_itk: convert_to_itk +298: plm_warp_itk: warping... +298: Saving image... +298: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha +298: Saving vf... +298: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-vf.mha +298: Load: 0.055913 +298: Run: 1.19806 +298: Save: 0.274302 +298: Total: 1.52828 +298: Finished! +298: +298: STDERR: 521: RETVAL: 0 521: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-translation-1.txt) 521: Setting PIH from M_IMG @@ -12353,237 +11963,6 @@ 521: Finished! 521: 521: STDERR: -521: Not an error -543: RETVAL: 0 -543: STDOUT: bspline_xform_initialize -543: rdims = (1,1,1) -543: vox_per_rgn = (4,4,4) -543: cdims = (4 4 4) -543: about to xform_convert -543: Converting to (itk) vector field -543: did xform_convert -543: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd -543: -543: STDERR: -543: Not an error -160/578 Test #521: plm-warp-h ............................ Passed 0.57 sec -test 571 - Start 571: proton-dose-6a - -571: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -571: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -571: Test timeout computed to be: 1500 -161/578 Test #543: plm-xf-convert-i ...................... Passed 0.34 sec -test 39 - Start 39: rect-10 - -39: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -39: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -39: Test timeout computed to be: 1500 -568: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -568: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.txt -568: EXPECTED_ERRNO is -565: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -565: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.txt -565: EXPECTED_ERRNO is -527: RETVAL: 0 -527: STDOUT: bspline_xform_initialize -527: rdims = (1,1,1) -527: vox_per_rgn = (4,4,4) -527: cdims = (4 4 4) -527: about to xform_convert -527: Converting to (itk) vector field -527: did xform_convert -527: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha -527: -527: STDERR: -527: Not an error -162/578 Test #527: plm-xf-convert-a ...................... Passed 0.55 sec -test 42 - Start 42: rect-11 - -42: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -42: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -42: Test timeout computed to be: 1500 -571: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -571: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.txt -571: EXPECTED_ERRNO is -509: RETVAL: 0 -509: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) -509: bspline_xform_initialize -509: rdims = (3,3,3) -509: vox_per_rgn = (15,15,15) -509: cdims = (6 6 6) -509: Setting PIH from XFORM -509: PIH is: -509: Origin = -25.0000 -25.0000 -25.0000 -509: Size = 38 38 38 -509: Spacing = 1.3158 1.3158 1.3158 -509: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -509: Rt_study_warp: Warping m_img -509: plm_warp_itk: xform_to_itk_vf -509: plm_warp_itk: convert_to_itk -509: plm_warp_itk: warping... -509: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha) -509: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha -509: Rt_study_warp: Saving vf. -509: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha -509: Rt_study_warp: warp and save ss. -509: Finished! -509: -509: STDERR: -509: Not an error -518: RETVAL: 0 -518: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm) -518: Setting PIH from M_IMG -518: PIH is: -518: Origin = -243.4211 -243.4211 -243.4211 -518: Size = 38 38 38 -518: Spacing = 13.1579 13.1579 13.1579 -518: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -518: Rt_study_warp: Warping m_img -518: plm_warp_itk: xform_to_itk_vf -518: plm_warp_itk: convert_to_itk -518: plm_warp_itk: warping... -518: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd) -518: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd -518: Rt_study_warp: warp and save ss. -518: Finished! -518: -518: STDERR: -518: Not an error -163/578 Test #509: plm-warp-c ............................ Passed 0.99 sec -test 51 - Start 51: rect-19 - -51: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-19" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -51: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -51: Test timeout computed to be: 1500 -164/578 Test #518: plm-warp-g ............................ Passed 0.75 sec -test 53 - Start 53: rectarr-01 - -53: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -53: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -53: Test timeout computed to be: 1500 -39: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -39: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50 -39: EXPECTED_ERRNO is -42: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -42: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60 -42: EXPECTED_ERRNO is -51: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -51: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150 -51: EXPECTED_ERRNO is -53: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -53: PARMS is synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5 -53: EXPECTED_ERRNO is -531: RETVAL: 0 -531: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt) -531: bspline_xform_initialize -531: rdims = (2,2,2) -531: vox_per_rgn = (11,11,11) -531: cdims = (5 5 5) -531: Setting PIH from XFORM -531: PIH is: -531: Origin = -24.3421 -24.3421 -24.3421 -531: Size = 19 19 19 -531: Spacing = 2.6316 2.6316 2.6316 -531: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -531: Rt_study_warp: Warping m_img -531: Running: plm_warp_native -531: Converting input image... -531: Converting xform... -531: bspline_xform_initialize -531: rdims = (2,2,2) -531: vox_per_rgn = (11,11,11) -531: cdims = (5 5 5) -531: Creating output vf... -531: Creating output volume... -531: Running native warper... -531: bspline_warp complete. -531: Back convert to original type... -531: > Convert vf to itk -531: > Conversion complete. -531: plm_warp_native is complete. -531: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd) -531: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd -531: Rt_study_warp: warp and save ss. -531: Finished! -531: -531: STDERR: -531: Not an error -165/578 Test #531: plm-xf-convert-d-warp-1 ............... Passed 0.66 sec -test 54 - Start 54: rectarr-02 - -54: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-02" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -54: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -54: Test timeout computed to be: 1500 -540: RETVAL: 0 -540: STDOUT: about to xform_convert -540: Converting to (itk) vector field -540: did xform_convert -540: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd -540: -540: STDERR: -540: Not an error -54: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -54: PARMS is synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5 -54: EXPECTED_ERRNO is -166/578 Test #540: plm-xf-convert-h ...................... Passed 0.64 sec -test 55 - Start 55: rectarr-m-01 - -55: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-m-01" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--fixed;rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -55: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -55: Test timeout computed to be: 1500 -534: RETVAL: 0 -534: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm) -534: BSplineDeformableTransform (0x55ab391ec030) -534: RTTI typeinfo: itk::BSplineDeformableTransform -534: Reference Count: 3 -534: Modified Time: 1477 -534: Debug: Off -534: Object Name: -534: Observers: -534: none -534: CoefficientImage: [ 0x55ab391e6710, 0x55ab391e8a40, 0x55ab391e8d00 ] -534: ValidRegion: ImageRegion (0x55ab391ec178) -534: Dimension: 3 -534: Index: [1, 1, 1] -534: Size: [3, 3, 3] -534: -534: BulkTransform: 0x55ab391e5c60 -534: WeightsFunction: 0x55ab391e2ee0 -534: BulkTransformType: IdentityTransform -534: GridOrigin: [-53.2895, -53.2895, -53.2895] -534: GridSpacing: [28.9474, 28.9474, 28.9474] -534: GridDirection: 1 0 0 -534: 0 1 0 -534: 0 0 1 -534: -534: GridRegion: ImageRegion (0x55ab391e6918) -534: Dimension: 3 -534: Index: [0, 0, 0] -534: Size: [5, 5, 5] -534: -534: Setting PIH from M_IMG -534: PIH is: -534: Origin = -25.0000 -25.0000 -25.0000 -534: Size = 38 38 38 -534: Spacing = 1.3158 1.3158 1.3158 -534: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -534: Rt_study_warp: Warping m_img -534: plm_warp_itk: xform_to_itk_vf -534: plm_warp_itk: convert_to_itk -534: plm_warp_itk: warping... -534: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd) -534: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd -534: Rt_study_warp: warp and save ss. -534: Finished! -534: -534: STDERR: 427: RETVAL: 0 427: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 427: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -12901,98 +12280,281 @@ 427: plm_warp_itk: warping... 427: Saving image... 427: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha -427: Load: 0.100615 -427: Run: 2.34046 -427: Save: 0.0200419 -427: Total: 2.46111 +427: Load: 0.071233 +427: Run: 1.0349 +427: Save: 0.0412371 +427: Total: 1.14737 427: Finished! 427: 427: STDERR: -409: RETVAL: 0 -409: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -409: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha -409: Launching registration worker thread -409: Inside registration worker thread -409: Doing registration stage -409: [1] xf_in->m_type = 0, xf_out->m_type = 0 -409: Fixed image for this stage: -409: Dim = 19 19 19 -409: Origin = -236.842 -236.842 -236.842 -409: Spacing = 26.3158 26.3158 26.3158 -409: Direction Cosines = -409: 1 0 0 -409: 0 1 0 -409: 0 0 1 -409: Moving image for this stage: -409: Dim = 19 19 19 -409: Origin = -236.842 -236.842 -236.842 -409: Spacing = 26.3158 26.3158 26.3158 -409: Direction Cosines = -409: 1 0 0 -409: 0 1 0 -409: 0 0 1 -409: Initial Parameters = [0, 0, 0, 0, 0, 0] -409: Starting ITK registration -409: StartEvent: [0, 0, 0, 0, 0, 0] -409: MSE [ 0, 0,10.00] 2961.438 [0, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999998, -4.1779009000267946e-15, -3.481584083355662e-15] -409: :: [0, 0, 0, 0, 0, 0] -409: * -409: MSE [ 1, 1,10.00] 2086.091 [-2.1511617770993377e-18, -3.3499860475555803e-7, 3.349986057263434e-7, -19.999999999999872, -9.942357126060759e-7, -9.94235714269012e-7] -875.35 -409: :: [0, -8.106231689300783e-8, 8.106231689440044e-8, -9.999999999999998, -4.1779009000267946e-15, -3.481584083355662e-15] -409: * -409: MSE [ 2, 2, 5.00] 1944.674 [-1.3891191756767762e-17, -0.000002038776368066573, 0.0000020387763873298082, -15.000000000094076, -0.000022427961026464958, -0.000022427960959728912] -141.42 -409: :: [-2.1511617770993377e-18, -3.3499860475555803e-7, 3.349986057263434e-7, -19.999999999999872, -9.942357126060759e-7, -9.94235714269012e-7] -409: * -409: MSE [ 3, 3, 2.50] 1989.993 [-5.2475171960613975e-17, -0.00000825398462039907, 0.000008253984725963325, -17.499999999592845, -0.00005557255690977937, -0.00005557255639965322] 45.32 -409: MSE [ 4, 4, 2.50] 1946.484 [-1.2085147275321085e-14, -0.0010533617730144524, 0.0010533617927744236, -19.99996630522468, -0.008992370045360024, -0.008992369922231047] -43.51 -409: EndEvent: [-1.2085147275321085e-14, -0.0010533617730144524, 0.0010533617927744236, -19.99996630522468, -0.008992370045360024, -0.008992369922231047] -409: VersorTransformOptimizer: Maximum number of iterations (5) exceeded. -409: ITK registration complete -409: [2] xf_out->m_type = 2, xf_in->m_type = 0 -409: Warping... -409: plm_warp_itk: xform_to_itk_vf -409: plm_warp_itk: convert_to_itk -409: plm_warp_itk: warping... -409: Saving image... -409: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stage-1.mha -409: Doing registration stage -409: [1] xf_in->m_type = 2, xf_out->m_type = 0 -409: SUBSAMPLE: (1 1 1), (1 1 1) -409: volume_calc_grad complete. -409: kerx: 0.0000000000 1.0000000000 0.0000000000 -409: kery: 0.0000000000 1.0000000000 0.0000000000 -409: kerz: 0.0000000000 1.0000000000 0.0000000000 -409: MSE [ 0] 4770.7 (0.947) [ 0.362 secs] -409: MSE [ 1] 4770.7 (0.947) [ 0.584 secs] -409: MSE [ 2] 4770.7 (0.947) [ 0.489 secs] -409: MSE [ 3] 4770.7 (0.947) [ 0.387 secs] -409: MSE [ 4] 4770.7 (0.947) [ 0.358 secs] -409: Time for 5 iterations = 2.180714 (0.436143 sec / it) -409: [2] xf_out->m_type = 10, xf_in->m_type = 2 -409: ** Registration worker thread finished. -409: Warping... -409: plm_warp_itk: xform_to_itk_vf -409: plm_warp_itk: convert_to_itk -409: plm_warp_itk: warping... -409: Saving image... -409: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-img.nrrd -409: Saving vf... -409: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd -409: Load: 0.128616 -409: Run: 2.27571 -409: Save: 0.041784 -409: Total: 2.44611 -409: Finished! -409: -409: STDERR: -427: Not an error -534: Not an error -55: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -55: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13 -55: EXPECTED_ERRNO is -409: Not an error -167/578 Test #409: plm-reg-multi-a ....................... Passed 3.79 sec -168/578 Test #534: plm-xf-convert-d-warp-2 ............... Passed 0.74 sec +540: RETVAL: 0 +540: STDOUT: about to xform_convert +540: Converting to (itk) vector field +540: did xform_convert +540: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd +540: +540: STDERR: +515: RETVAL: 0 +515: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-affine-a.tfm) +515: Setting PIH from M_IMG +515: PIH is: +515: Origin = -243.4211 -243.4211 -243.4211 +515: Size = 38 38 38 +515: Spacing = 13.1579 13.1579 13.1579 +515: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +515: Rt_study_warp: Warping m_img +515: plm_warp_itk: xform_to_itk_vf +515: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd) +515: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-img.nrrd +515: Rt_study_warp: warp and save ss. +515: Finished! +515: +515: STDERR: +531: RETVAL: 0 +531: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-xf-convert.txt) +531: bspline_xform_initialize +531: rdims = (2,2,2) +531: vox_per_rgn = (11,11,11) +531: cdims = (5 5 5) +531: Setting PIH from XFORM +531: PIH is: +531: Origin = -24.3421 -24.3421 -24.3421 +531: Size = 19 19 19 +531: Spacing = 2.6316 2.6316 2.6316 +531: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +531: Rt_study_warp: Warping m_img +531: Running: plm_warp_native +531: Converting input image... +531: Converting xform... +531: bspline_xform_initialize +531: rdims = (2,2,2) +531: vox_per_rgn = (11,11,11) +531: cdims = (5 5 5) +531: Creating output vf... +531: Creating output volume... +531: Running native warper... +531: bspline_warp complete. +531: Back convert to original type... +531: > Convert vf to itk +531: > Conversion complete. +531: plm_warp_native is complete. +531: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd) +531: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd +531: Rt_study_warp: warp and save ss. +531: Finished! +531: +531: STDERR: +474: Not an error +139/578 Test #474: plm-thumbnail-a ....................... Passed 0.72 sec +test 42 + Start 42: rect-11 + +42: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-11" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +42: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +42: Test timeout computed to be: 1500 +298: Not an error +140/578 Test #298: plm-reg-itk-bspline ................... Passed 1.95 sec +test 51 + Start 51: rect-19 + +51: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-19" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +51: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +51: Test timeout computed to be: 1500 +501: RETVAL: 0 +501: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) +501: bspline_xform_initialize +501: rdims = (3,3,3) +501: vox_per_rgn = (15,15,15) +501: cdims = (6 6 6) +501: Setting PIH from XFORM +501: PIH is: +501: Origin = -25.0000 -25.0000 -25.0000 +501: Size = 38 38 38 +501: Spacing = 1.3158 1.3158 1.3158 +501: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +501: Rt_study_warp: Warping m_img +501: plm_warp_itk: xform_to_itk_vf +501: plm_warp_itk: convert_to_itk +501: plm_warp_itk: warping... +501: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha) +501: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a.mha +501: Rt_study_warp: Saving vf. +501: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha +501: Rt_study_warp: warp and save ss. +501: Finished! +501: +501: STDERR: +509: RETVAL: 0 +509: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) +509: bspline_xform_initialize +509: rdims = (3,3,3) +509: vox_per_rgn = (15,15,15) +509: cdims = (6 6 6) +509: Setting PIH from XFORM +509: PIH is: +509: Origin = -25.0000 -25.0000 -25.0000 +509: Size = 38 38 38 +509: Spacing = 1.3158 1.3158 1.3158 +509: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +509: Rt_study_warp: Warping m_img +509: plm_warp_itk: xform_to_itk_vf +509: plm_warp_itk: convert_to_itk +509: plm_warp_itk: warping... +509: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha) +509: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha +509: Rt_study_warp: Saving vf. +509: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-vf.mha +509: Rt_study_warp: warp and save ss. +509: Finished! +509: +509: STDERR: +509: Not an error +39: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +39: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-200 50 -50 50 -50 50 +39: EXPECTED_ERRNO is +512: RETVAL: 0 +512: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/xf-bspline-2.txt) +512: bspline_xform_initialize +512: rdims = (3,3,3) +512: vox_per_rgn = (15,15,15) +512: cdims = (6 6 6) +512: Setting PIH from XFORM +512: PIH is: +512: Origin = -25.0000 -25.0000 -25.0000 +512: Size = 38 38 38 +512: Spacing = 1.3158 1.3158 1.3158 +512: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +512: Rt_study_warp: Warping m_img +512: Running: plm_warp_native +512: Converting input image... +512: Converting xform... +512: bspline_xform_initialize +512: rdims = (3,3,3) +512: vox_per_rgn = (15,15,15) +512: cdims = (6 6 6) +512: Creating output vf... +512: Creating output volume... +512: Running native warper... +512: bspline_warp complete. +512: Back convert to original type... +512: > Convert vf to itk +512: > Conversion complete. +512: plm_warp_native is complete. +512: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha) +512: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha +512: Rt_study_warp: Saving vf. +512: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-vf.mha +512: Rt_study_warp: warp and save ss. +512: Finished! +512: +512: STDERR: +512: Not an error +42: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +42: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;0;--foreground;-1000;--rect-size;-40 60 -40 60 -40 60 +42: EXPECTED_ERRNO is +546: RETVAL: 0 +546: STDOUT: Paste and smooth loop +546: Iteration 0/20 +546: Convolving +546: Iteration 1/20 +546: Convolving +546: Iteration 2/20 +546: Convolving +546: Iteration 3/20 +546: Convolving +546: Iteration 4/20 +546: Convolving +546: Iteration 5/20 +546: Convolving +546: Iteration 6/20 +546: Convolving +546: Iteration 7/20 +546: Convolving +546: Iteration 8/20 +546: Convolving +546: Iteration 9/20 +546: Convolving +546: Iteration 10/20 +546: Convolving +546: Iteration 11/20 +546: Convolving +546: Iteration 12/20 +546: Convolving +546: Iteration 13/20 +546: Convolving +546: Iteration 14/20 +546: Convolving +546: Iteration 15/20 +546: Convolving +546: Iteration 16/20 +546: Convolving +546: Iteration 17/20 +546: Convolving +546: Iteration 18/20 +546: Convolving +546: Iteration 19/20 +546: Convolving +546: Done. +546: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha +546: +546: STDERR: +549: RETVAL: 0 +549: STDOUT: Paste and smooth loop +549: Iteration 0/10 +549: Convolving +549: Iteration 1/10 +549: Convolving +549: Iteration 2/10 +549: Convolving +549: Iteration 3/10 +549: Convolving +549: Iteration 4/10 +549: Convolving +549: Iteration 5/10 +549: Convolving +549: Iteration 6/10 +549: Convolving +549: Iteration 7/10 +549: Convolving +549: Iteration 8/10 +549: Convolving +549: Iteration 9/10 +549: Convolving +549: Done. +549: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha +549: +549: STDERR: +549: Not an error +489: Not an error +521: Not an error +480: Not an error +504: Not an error +495: Not an error +543: Not an error +141/578 Test #480: plm-thumbnail-c ....................... Passed 0.82 sec +142/578 Test #489: plm-threshold-a ....................... Passed 0.79 sec +143/578 Test #504: plm-warp-b ............................ Passed 0.73 sec +144/578 Test #509: plm-warp-c ............................ Passed 0.71 sec +145/578 Test #512: plm-warp-d ............................ Passed 0.71 sec +146/578 Test #521: plm-warp-h ............................ Passed 0.70 sec +test 53 + Start 53: rectarr-01 + +53: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-01" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +53: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +53: Test timeout computed to be: 1500 +test 54 + Start 54: rectarr-02 + +54: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-02" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +54: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +54: Test timeout computed to be: 1500 +test 55 + Start 55: rectarr-m-01 + +55: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rectarr-m-01" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--fixed;rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +55: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +55: Test timeout computed to be: 1500 test 56 Start 56: rectarr-m-02 @@ -13005,19 +12567,517 @@ 61: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=roi-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 61: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 61: Test timeout computed to be: 1500 -169/578 Test #427: plm-reg-trans-a ....................... Passed 3.48 sec test 65 Start 65: sphere-4 65: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=sphere-4" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 65: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 65: Test timeout computed to be: 1500 +501: Not an error +546: Not an error +147/578 Test #495: plm-threshold-c ....................... Passed 0.78 sec +148/578 Test #543: plm-xf-convert-i ...................... Passed 0.67 sec +477: Not an error +149/578 Test #477: plm-thumbnail-b ....................... Passed 0.87 sec +534: RETVAL: 0 +534: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-xf.tfm) +534: BSplineDeformableTransform (0x5598caad2670) +534: RTTI typeinfo: itk::BSplineDeformableTransform +534: Reference Count: 3 +534: Modified Time: 1477 +534: Debug: Off +534: Object Name: +534: Observers: +534: none +534: CoefficientImage: [ 0x5598caaccd50, 0x5598caacef60, 0x5598caacf220 ] +534: ValidRegion: ImageRegion (0x5598caad27b8) +534: Dimension: 3 +534: Index: [1, 1, 1] +534: Size: [3, 3, 3] +534: +534: BulkTransform: 0x5598caacc230 +534: WeightsFunction: 0x5598caad1590 +534: BulkTransformType: IdentityTransform +534: GridOrigin: [-53.2895, -53.2895, -53.2895] +534: GridSpacing: [28.9474, 28.9474, 28.9474] +534: GridDirection: 1 0 0 +534: 0 1 0 +534: 0 0 1 +534: +534: GridRegion: ImageRegion (0x5598caaccf58) +534: Dimension: 3 +534: Index: [0, 0, 0] +534: Size: [5, 5, 5] +534: +534: Setting PIH from M_IMG +534: PIH is: +534: Origin = -25.0000 -25.0000 -25.0000 +534: Size = 38 38 38 +534: Spacing = 1.3158 1.3158 1.3158 +534: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +534: Rt_study_warp: Warping m_img +534: plm_warp_itk: xform_to_itk_vf +534: plm_warp_itk: convert_to_itk +534: plm_warp_itk: warping... +534: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd) +534: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd +534: Rt_study_warp: warp and save ss. +534: Finished! +534: +534: STDERR: +534: Not an error +483: Not an error +540: Not an error +531: Not an error +527: Not an error +518: Not an error +524: Not an error +452: Not an error +515: Not an error +462: Not an error +427: Not an error +492: Not an error +51: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +51: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-150 150 -150 150 -150 150 +51: EXPECTED_ERRNO is +53: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +53: PARMS is synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-5 5 5 15 -5 5 +53: EXPECTED_ERRNO is +150/578 Test #427: plm-reg-trans-a ....................... Passed 1.70 sec +151/578 Test #452: plm-compose-c ......................... Passed 1.13 sec +152/578 Test #462: plm-resample-c ........................ Passed 0.89 sec +153/578 Test #483: plm-intersect ......................... Passed 0.85 sec +154/578 Test #492: plm-threshold-b ....................... Passed 0.82 sec +155/578 Test #501: plm-warp-a ............................ Passed 0.77 sec +156/578 Test #515: plm-warp-f ............................ Passed 0.74 sec +157/578 Test #518: plm-warp-g ............................ Passed 0.74 sec +158/578 Test #524: plm-warp-i ............................ Passed 0.73 sec +159/578 Test #527: plm-xf-convert-a ...................... Passed 0.72 sec +160/578 Test #531: plm-xf-convert-d-warp-1 ............... Passed 0.72 sec +161/578 Test #534: plm-xf-convert-d-warp-2 ............... Passed 0.70 sec +162/578 Test #540: plm-xf-convert-h ...................... Passed 0.69 sec +163/578 Test #546: xf-invert-vf-zero-1 ................... Passed 0.67 sec +164/578 Test #549: xf-invert-vf-trans-1 .................. Passed 0.66 sec +test 77 + Start 77: vf-zero-stats + +77: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +77: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +77: Test timeout computed to be: 1500 +test 79 + Start 79: vf-trans-1-stats + +79: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +79: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +79: Test timeout computed to be: 1500 +test 81 + Start 81: vf-trans-2-stats + +81: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +81: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +81: Test timeout computed to be: 1500 +test 83 + Start 83: vf-radial-1-stats + +83: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +83: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +83: Test timeout computed to be: 1500 +test 85 + Start 85: plm-compare-a + +85: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +85: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +85: Test timeout computed to be: 1500 +test 87 + Start 87: plm-compare-b + +87: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +87: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +87: Test timeout computed to be: 1500 +test 89 + Start 89: plm-compare-c + +89: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +89: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +89: Test timeout computed to be: 1500 +test 92 + Start 92: plm-diff-a-stats + +92: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +92: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +92: Test timeout computed to be: 1500 +test 95 + Start 95: plm-diff-b-stats + +95: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +95: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +95: Test timeout computed to be: 1500 +test 97 + Start 97: demons-a + +97: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=demons-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/demons" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=-m;50;-s;3;-f;5 5 5;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +97: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +97: Test timeout computed to be: 1500 +test 100 + Start 100: drr-a-stats + +100: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +100: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +100: Test timeout computed to be: 1500 +test 103 + Start 103: drr-b-stats + +103: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-b/out_0010.pfm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +103: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +103: Test timeout computed to be: 1500 +test 106 + Start 106: drr-c-stats + +106: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-c/out_0010.pfm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +106: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +106: Test timeout computed to be: 1500 +test 115 + Start 115: landmark-warp-a-stats-1 + +115: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +115: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +115: Test timeout computed to be: 1500 +test 117 + Start 117: landmark-warp-a-stats-2 + +117: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +117: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +117: Test timeout computed to be: 1500 +test 120 + Start 120: landmark-warp-b-stats-1 + +120: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +120: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +120: Test timeout computed to be: 1500 +test 122 + Start 122: landmark-warp-b-stats-2 + +122: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +122: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +122: Test timeout computed to be: 1500 +test 125 + Start 125: landmark-warp-c-stats-1 + +125: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +125: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +125: Test timeout computed to be: 1500 +372: RETVAL: 0 +372: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +372: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha +372: Launching registration worker thread +372: Inside registration worker thread +372: Doing registration stage +372: [1] xf_in->m_type = 0, xf_out->m_type = 0 +372: RESAMPLE 1 1: (1 1 1), (1 1 1) +372: RESAMPLE 1 1: (1 1 1), (1 1 1) +372: volume_calc_grad complete. +372: bspline_xform_initialize +372: Warning: vox_per_rgn was less than 4. +372: Warning: vox_per_rgn was less than 4. +372: Warning: vox_per_rgn was less than 4. +372: rdims = (10,10,10) +372: vox_per_rgn = (4,4,4) +372: cdims = (13 13 13) +372: Algorithm flavor = g +372: Threading = 0 +372: Regularization: flavor = c lambda = 1.000000 +372: Regularizer initialized +372: >> Checking JH allocation +372: BSPLINE PARMS +372: max_its = 5 +372: max_feval = 5 +372: BSPLINE XFORM HEADER +372: vox_per_rgn = 4 4 4 +372: roi_offset = 0 0 0 +372: roi_dim = 38 38 38 +372: img_dc = 1 0 0 0 1 0 0 0 1 +372: BST METRICS +372: MET 110100 MSE 1.000000 +372: Setting nmax, mmax = 6591 83 +372: >>> START +372: This problem is unconstrained. +372: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.161 s ] +372: MSE 5540.166 RM 0.000 [ 0.041 | 0.121 ] +372: CMIN 0.00 CAVG 0.00 CMAX 0.00 +372: LSD 0.00 +372: [ 0, 1] SCORE 5484.176 NV 54872 GM 0.045 GN 27.7 [ 0.264 s ] +372: MSE 5484.124 RM 0.052 [ 0.072 | 0.192 ] +372: CMIN -0.16 CAVG -0.00 CMAX 0.22 +372: LSD 1.00 +372: [ 0, 2] SCORE 5267.543 NV 54872 GM 0.224 GN 25.9 [ 0.125 s ] +372: MSE 5266.236 RM 1.307 [ 0.061 | 0.063 ] +372: CMIN -0.81 CAVG 0.00 CMAX 1.12 +372: LSD 5.00 +372: [ 0, 3] SCORE 4507.597 NV 54872 GM 0.928 GN 18.7 [ 0.170 s ] +372: MSE 4484.536 RM 23.060 [ 0.049 | 0.121 ] +372: CMIN -3.39 CAVG 0.00 CMAX 4.70 +372: LSD 21.00 +372: [ 1, 4] SCORE 3149.129 NV 54872 GM 4.968 GN 2.36 [ 0.172 s ] +372: MSE 2955.678 RM 193.451 [ 0.060 | 0.113 ] +372: CMIN -10.06 CAVG -0.00 CMAX 13.65 +372: LSD 42.53 +372: [ 2, 5] SCORE 3079.150 NV 54872 GM -1.061 GN 2.72 [ 0.171 s ] +372: MSE 2880.344 RM 198.806 [ 0.063 | 0.109 ] +372: CMIN -10.75 CAVG -0.00 CMAX 13.43 +372: LSD 6.23 +372: [2] xf_out->m_type = 9, xf_in->m_type = 0 +372: ** Registration worker thread finished. +372: Writing transformation ... +372: Warping... +372: Running: plm_warp_native +372: Converting input image... +372: Converting xform... +372: bspline_xform_initialize +372: rdims = (10,10,10) +372: vox_per_rgn = (4,4,4) +372: cdims = (13 13 13) +372: Creating output vf... +372: Creating output volume... +372: Running native warper... +372: bspline_warp complete. +372: Back convert to original type... +372: > Convert vf to itk +372: > Conversion complete. +372: plm_warp_native is complete. +372: Saving image... +372: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-img.mha +372: Saving vf... +372: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha +372: Load: 0.0906599 +372: Run: 1.07491 +372: Save: 0.321417 +372: Total: 1.48698 +372: Finished! +372: +372: STDERR: +372: Not an error +55: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +55: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 -20 0 -13 13 +55: EXPECTED_ERRNO is +54: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +54: PARMS is synth;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha;--output-type;float;--pattern;rect;--background;-1000;--foreground;0;--rect-size;-10 0 5 15 -5 5 +54: EXPECTED_ERRNO is +412: RETVAL: 0 +412: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +412: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha +412: Launching registration worker thread +412: Inside registration worker thread +412: Doing registration stage +412: [1] xf_in->m_type = 0, xf_out->m_type = 0 +412: RESAMPLE 1 1: (4 4 4), (4 4 4) +412: RESAMPLE 1 1: (4 4 4), (4 4 4) +412: volume_calc_grad complete. +412: bspline_xform_initialize +412: Warning: vox_per_rgn was less than 4. +412: Warning: vox_per_rgn was less than 4. +412: Warning: vox_per_rgn was less than 4. +412: rdims = (3,3,3) +412: vox_per_rgn = (4,4,4) +412: cdims = (6 6 6) +412: Algorithm flavor = g +412: Threading = 0 +412: >> Checking JH allocation +412: BSPLINE PARMS +412: max_its = 20 +412: max_feval = 20 +412: BSPLINE XFORM HEADER +412: vox_per_rgn = 4 4 4 +412: roi_offset = 0 0 0 +412: roi_dim = 9 9 9 +412: img_dc = 1 0 0 0 1 0 0 0 1 +412: BST METRICS +412: MET 110100 MSE 1.000000 +412: Setting nmax, mmax = 648 27 +412: >>> START +412: This problem is unconstrained. +412: [ 0, 0] MSE 1310.066 NV 729 GM 32.312 GN 10.8 [ 0.064 s ] +412: CMIN 0.00 CAVG 0.00 CMAX 0.00 +412: LSD 0.00 +412: [ 0, 1] MSE 1295.068 NV 729 GM 32.107 GN 10.8 [ 0.034 s ] +412: CMIN -0.80 CAVG -0.00 CMAX 0.03 +412: LSD 1.00 +412: [ 0, 2] MSE 1236.886 NV 729 GM 31.289 GN 10.5 [ 0.037 s ] +412: CMIN -3.98 CAVG -0.02 CMAX 0.14 +412: LSD 5.00 +412: [ 0, 3] MSE 1033.121 NV 729 GM 28.011 GN 9.4 [ 0.054 s ] +412: CMIN -16.73 CAVG -0.10 CMAX 0.57 +412: LSD 21.00 +412: [ 1, 4] MSE 1227.425 NV 729 GM -31.287 GN 10.6 [ 0.036 s ] +412: CMIN -130.39 CAVG -0.75 CMAX 15.78 +412: LSD 145.43 +412: [ 1, 5] MSE 666.262 NV 729 GM 16.009 GN 5.49 [ 0.034 s ] +412: CMIN -63.32 CAVG -0.36 CMAX 6.81 +412: LSD 59.61 +412: [ 2, 6] MSE 1232.974 NV 729 GM -31.573 GN 10.6 [ 0.035 s ] +412: CMIN -133.31 CAVG -0.76 CMAX 26.37 +412: LSD 96.76 +412: [ 2, 7] MSE 663.364 NV 729 GM -16.837 GN 5.81 [ 0.047 s ] +412: CMIN -74.19 CAVG -0.42 CMAX 9.85 +412: LSD 15.03 +412: [ 3, 8] MSE 654.961 NV 729 GM -10.617 GN 3.9 [ 0.048 s ] +412: CMIN -69.17 CAVG -0.40 CMAX 9.75 +412: LSD 6.20 +412: [ 4, 9] MSE 648.056 NV 729 GM 16.849 GN 5.74 [ 0.046 s ] +412: CMIN -59.17 CAVG -0.35 CMAX 12.07 +412: LSD 13.05 +412: [ 4, 10] MSE 648.518 NV 729 GM 6.481 GN 2.37 [ 0.059 s ] +412: CMIN -64.64 CAVG -0.37 CMAX 10.80 +412: LSD 5.91 +412: [ 5, 11] MSE 642.586 NV 729 GM -2.800 GN 1.61 [ 0.039 s ] +412: CMIN -65.72 CAVG -0.38 CMAX 12.16 +412: LSD 3.39 +412: [ 6, 12] MSE 621.446 NV 729 GM -3.050 GN 1.62 [ 0.035 s ] +412: CMIN -65.92 CAVG -0.39 CMAX 17.36 +412: LSD 11.87 +412: [ 6, 13] MSE 550.866 NV 729 GM -6.628 GN 2.45 [ 0.032 s ] +412: CMIN -66.69 CAVG -0.41 CMAX 38.13 +412: LSD 59.33 +412: [ 7, 14] MSE 512.605 NV 729 GM -3.857 GN 1.62 [ 0.035 s ] +412: CMIN -62.22 CAVG -0.42 CMAX 47.82 +412: LSD 24.85 +412: [ 7, 15] MSE 447.450 NV 729 GM 1.527 GN 1.38 [ 0.035 s ] +412: CMIN -86.57 CAVG -0.48 CMAX 86.57 +412: LSD 124.23 +412: [ 7, 16] MSE 464.351 NV 729 GM 2.120 GN 1.3 [ 0.042 s ] +412: CMIN -65.28 CAVG -0.45 CMAX 65.28 +412: LSD 69.63 +412: [ 8, 17] MSE 472.701 NV 729 GM -6.632 GN 2.42 [ 0.015 s ] +412: CMIN -65.88 CAVG -0.45 CMAX 65.88 +412: LSD 10.76 +412: [ 8, 18] MSE 465.428 NV 729 GM 2.619 GN 1.34 [ 0.024 s ] +412: CMIN -65.36 CAVG -0.45 CMAX 65.36 +412: LSD 1.50 +412: [ 8, 19] MSE 464.475 NV 729 GM 2.117 GN 1.3 [ 0.018 s ] +412: CMIN -65.29 CAVG -0.45 CMAX 65.29 +412: LSD 0.17 +412: [ 8, 20] MSE 464.365 NV 729 GM 2.120 GN 1.3 [ 0.006 s ] +412: CMIN -65.28 CAVG -0.45 CMAX 65.28 +412: LSD 0.02 +412: [2] xf_out->m_type = 9, xf_in->m_type = 0 +412: Doing registration stage +412: [1] xf_in->m_type = 9, xf_out->m_type = 0 +412: RESAMPLE 1 1: (1 1 1), (1 1 1) +412: RESAMPLE 1 1: (1 1 1), (1 1 1) +412: volume_calc_grad complete. +412: bspline_xform_initialize +412: Warning: vox_per_rgn was less than 4. +412: Warning: vox_per_rgn was less than 4. +412: Warning: vox_per_rgn was less than 4. +412: rdims = (10,10,10) +412: vox_per_rgn = (4,4,4) +412: cdims = (13 13 13) +412: Algorithm flavor = g +412: Threading = 0 +412: >> Checking JH allocation +412: BSPLINE PARMS +412: max_its = 20 +412: max_feval = 20 +412: BSPLINE XFORM HEADER +412: vox_per_rgn = 4 4 4 +412: roi_offset = 0 0 0 +412: roi_dim = 38 38 38 +412: img_dc = 1 0 0 0 1 0 0 0 1 +412: BST METRICS +412: MET 110100 MSE 1.000000 +412: Setting nmax, mmax = 6591 83 +412: >>> START +412: This problem is unconstrained. +412: [ 0, 0] MSE 2187.416 NV 54548 GM -54.885 GN 20.1 [ 0.015 s ] +412: CMIN -34.32 CAVG -2.98 CMAX 34.99 +412: LSD 0.00 +412: [ 0, 1] MSE 2164.676 NV 54548 GM -53.547 GN 19.7 [ 0.005 s ] +412: CMIN -34.32 CAVG -2.98 CMAX 34.99 +412: LSD 1.00 +412: [ 0, 2] MSE 2077.643 NV 54548 GM -48.153 GN 18.1 [ 0.009 s ] +412: CMIN -34.32 CAVG -2.98 CMAX 34.99 +412: LSD 5.00 +412: [ 1, 3] MSE 1531.465 NV 54548 GM -5.028 GN 6.72 [ 0.008 s ] +412: CMIN -34.32 CAVG -2.97 CMAX 34.99 +412: LSD 49.50 +412: [ 2, 4] MSE 1454.329 NV 54548 GM 33.264 GN 9.36 [ 0.008 s ] +412: CMIN -34.74 CAVG -2.96 CMAX 34.99 +412: LSD 27.82 +412: [ 3, 5] MSE 1285.873 NV 54548 GM 41.621 GN 9.3 [ 0.009 s ] +412: CMIN -38.62 CAVG -2.96 CMAX 34.99 +412: LSD 33.32 +412: [ 4, 6] MSE 601.694 NV 54548 GM -58.120 GN 12.7 [ 0.010 s ] +412: CMIN -66.67 CAVG -3.01 CMAX 47.45 +412: LSD 225.15 +412: [ 5, 7] MSE 543.836 NV 54548 GM 31.901 GN 9.57 [ 0.008 s ] +412: CMIN -66.22 CAVG -2.99 CMAX 59.99 +412: LSD 53.14 +412: [ 6, 8] MSE 418.242 NV 54548 GM 12.804 GN 3.31 [ 0.007 s ] +412: CMIN -65.97 CAVG -3.00 CMAX 53.84 +412: LSD 23.35 +412: [ 7, 9] MSE 404.446 NV 54548 GM -9.046 GN 2.82 [ 0.005 s ] +412: CMIN -67.92 CAVG -3.00 CMAX 54.77 +412: LSD 12.26 +412: [ 8, 10] MSE 385.397 NV 54548 GM -5.940 GN 2.61 [ 0.005 s ] +412: CMIN -68.58 CAVG -3.00 CMAX 55.54 +412: LSD 8.37 +412: [ 9, 11] MSE 330.971 NV 54548 GM -28.234 GN 4.05 [ 0.005 s ] +412: CMIN -72.02 CAVG -3.01 CMAX 62.09 +412: LSD 44.90 +412: [10, 12] MSE 292.026 NV 54548 GM -5.908 GN 2.66 [ 0.007 s ] +412: CMIN -74.57 CAVG -3.00 CMAX 67.66 +412: LSD 33.62 +412: [11, 13] MSE 251.369 NV 54548 GM 4.024 GN 2.37 [ 0.008 s ] +412: CMIN -84.98 CAVG -2.99 CMAX 73.83 +412: LSD 50.34 +412: [12, 14] MSE 228.758 NV 54548 GM 11.643 GN 4.01 [ 0.013 s ] +412: CMIN -98.90 CAVG -2.97 CMAX 76.10 +412: LSD 60.96 +412: [13, 15] MSE 306.308 NV 54548 GM 49.796 GN 7.96 [ 0.021 s ] +412: CMIN -130.24 CAVG -2.94 CMAX 83.22 +412: LSD 135.53 +412: [13, 16] MSE 226.800 NV 54548 GM 20.941 GN 4.12 [ 0.025 s ] +412: CMIN -103.93 CAVG -2.96 CMAX 76.84 +412: LSD 21.75 +412: [14, 17] MSE 205.578 NV 54548 GM 24.444 GN 3.6 [ 0.012 s ] +412: CMIN -117.55 CAVG -2.96 CMAX 78.37 +412: LSD 53.89 +412: [15, 18] MSE 158.105 NV 54548 GM 6.383 GN 1.69 [ 0.006 s ] +412: CMIN -116.51 CAVG -2.96 CMAX 72.95 +412: LSD 24.10 +412: [16, 19] MSE 139.232 NV 54548 GM -1.923 GN 1.28 [ 0.007 s ] +412: CMIN -119.83 CAVG -2.96 CMAX 72.22 +412: LSD 15.80 +412: [17, 20] MSE 119.453 NV 54548 GM -6.009 GN 1.45 [ 0.005 s ] +412: CMIN -128.50 CAVG -2.96 CMAX 71.16 +412: LSD 33.91 +412: [2] xf_out->m_type = 9, xf_in->m_type = 9 +412: ** Registration worker thread finished. +412: Warping... +412: Running: plm_warp_native +412: Converting input image... +412: Converting xform... +412: bspline_xform_initialize +412: rdims = (10,10,10) +412: vox_per_rgn = (4,4,4) +412: cdims = (13 13 13) +412: Creating output volume... +412: Running native warper... +412: bspline_warp complete. +412: Back convert to original type... +412: plm_warp_native is complete. +412: Saving image... +412: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd +412: Load: 0.240351 +412: Run: 1.00895 +412: Save: 0.0876729 +412: Total: 1.33697 +412: Finished! +412: +412: STDERR: +412: Not an error 56: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 56: PARMS is synth;--fixed;rectarr-01-a.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha;--output-type;uchar;--pattern;rect;--background;0;--foreground;1;--rect-size;-13 13 0 20 -13 13 56: EXPECTED_ERRNO is -65: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -65: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150 -65: EXPECTED_ERRNO is 61: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 61: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;0 300 -300 300 -300 300 61: EXPECTED_ERRNO is @@ -13339,923 +13399,594 @@ 430: plm_warp_itk: warping... 430: Saving image... 430: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha -430: Load: 0.12841 -430: Run: 2.27435 -430: Save: 0.0127668 -430: Total: 2.41552 +430: Load: 0.089303 +430: Run: 1.35787 +430: Save: 0.0402789 +430: Total: 1.48745 430: Finished! 430: 430: STDERR: 430: Not an error -170/578 Test #430: plm-reg-trans-b ....................... Passed 3.30 sec -test 77 - Start 77: vf-zero-stats - -77: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-zero-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -77: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -77: Test timeout computed to be: 1500 +65: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +65: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha;--output-type;float;--pattern;sphere;--dim;38 38 38;--background;-1000;--foreground;0;--center;0 0 0;--radius;150 150 150 +65: EXPECTED_ERRNO is 42: RETVAL: 0 42: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha 42: 42: STDERR: 42: Not an error -171/578 Test #42: rect-11 ............................... Passed 0.44 sec -test 79 - Start 79: vf-trans-1-stats - -79: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -79: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -79: Test timeout computed to be: 1500 -549: RETVAL: 0 -549: STDOUT: Paste and smooth loop -549: Iteration 0/10 -549: Convolving -549: Iteration 1/10 -549: Convolving -549: Iteration 2/10 -549: Convolving -549: Iteration 3/10 -549: Convolving -549: Iteration 4/10 -549: Convolving -549: Iteration 5/10 -549: Convolving -549: Iteration 6/10 -549: Convolving -549: Iteration 7/10 -549: Convolving -549: Iteration 8/10 -549: Convolving -549: Iteration 9/10 -549: Convolving -549: Done. -549: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha -549: -549: STDERR: -549: Not an error -79: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -79: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha -79: EXPECTED_ERRNO is -172/578 Test #549: xf-invert-vf-trans-1 .................. Passed 0.79 sec -test 81 - Start 81: vf-trans-2-stats - -81: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-trans-2-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -81: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -81: Test timeout computed to be: 1500 -77: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -77: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha -77: EXPECTED_ERRNO is 39: RETVAL: 0 39: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha 39: 39: STDERR: 39: Not an error -173/578 Test #39: rect-10 ............................... Passed 0.54 sec -test 83 - Start 83: vf-radial-1-stats - -83: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-radial-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -83: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -83: Test timeout computed to be: 1500 -53: RETVAL: 0 -53: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha -53: -53: STDERR: -53: Not an error -174/578 Test #53: rectarr-01 ............................ Passed 0.49 sec -test 85 - Start 85: plm-compare-a - -85: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -85: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -85: Test timeout computed to be: 1500 -546: RETVAL: 0 -546: STDOUT: Paste and smooth loop -546: Iteration 0/20 -546: Convolving -546: Iteration 1/20 -546: Convolving -546: Iteration 2/20 -546: Convolving -546: Iteration 3/20 -546: Convolving -546: Iteration 4/20 -546: Convolving -546: Iteration 5/20 -546: Convolving -546: Iteration 6/20 -546: Convolving -546: Iteration 7/20 -546: Convolving -546: Iteration 8/20 -546: Convolving -546: Iteration 9/20 -546: Convolving -546: Iteration 10/20 -546: Convolving -546: Iteration 11/20 -546: Convolving -546: Iteration 12/20 -546: Convolving -546: Iteration 13/20 -546: Convolving -546: Iteration 14/20 -546: Convolving -546: Iteration 15/20 -546: Convolving -546: Iteration 16/20 -546: Convolving -546: Iteration 17/20 -546: Convolving -546: Iteration 18/20 -546: Convolving -546: Iteration 19/20 -546: Convolving -546: Done. -546: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha -546: -546: STDERR: -546: Not an error +77: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +77: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero.mha +77: EXPECTED_ERRNO is +79: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +79: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha +79: EXPECTED_ERRNO is 81: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 81: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 81: EXPECTED_ERRNO is 83: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 83: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1.mha 83: EXPECTED_ERRNO is -175/578 Test #546: xf-invert-vf-zero-1 ................... Passed 0.91 sec -test 87 - Start 87: plm-compare-b - -87: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -87: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -87: Test timeout computed to be: 1500 -87: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -87: PARMS is compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha -87: EXPECTED_ERRNO is 85: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 85: PARMS is compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 85: EXPECTED_ERRNO is -65: RETVAL: 0 -65: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha -65: -65: STDERR: -65: Not an error -176/578 Test #65: sphere-4 .............................. Passed 0.35 sec -test 89 - Start 89: plm-compare-c - -89: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compare-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -89: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -89: Test timeout computed to be: 1500 -51: RETVAL: 0 -51: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha -51: -51: STDERR: -51: Not an error -177/578 Test #51: rect-19 ............................... Passed 0.66 sec -test 92 - Start 92: plm-diff-a-stats - -92: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -92: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -92: Test timeout computed to be: 1500 -54: RETVAL: 0 -54: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha -54: -54: STDERR: -54: Not an error -178/578 Test #54: rectarr-02 ............................ Passed 0.59 sec -test 95 - Start 95: plm-diff-b-stats - -95: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-diff-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -95: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -95: Test timeout computed to be: 1500 -55: RETVAL: 0 -55: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha -55: -55: STDERR: -55: Not an error +87: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +87: PARMS is compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha +87: EXPECTED_ERRNO is 89: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 89: PARMS is compare;--mask;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2.mha 89: EXPECTED_ERRNO is -56: RETVAL: 0 -56: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha -56: -56: STDERR: -56: Not an error -179/578 Test #55: rectarr-m-01 .......................... Passed 0.54 sec -test 97 - Start 97: demons-a - -97: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=demons-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/demons" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=-m;50;-s;3;-f;5 5 5;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -97: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -97: Test timeout computed to be: 1500 92: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 92: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-img.mha 92: EXPECTED_ERRNO is 95: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 95: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-vf.mha 95: EXPECTED_ERRNO is -180/578 Test #56: rectarr-m-02 .......................... Passed 0.51 sec -test 100 - Start 100: drr-a-stats - -100: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -100: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -100: Test timeout computed to be: 1500 97: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/demons 97: PARMS is -m;50;-s;3;-f;5 5 5;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha 97: EXPECTED_ERRNO is 100: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 100: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a/out_0010.pfm 100: EXPECTED_ERRNO is -77: RETVAL: 0 -77: STDOUT: Min: 0.000 0.000 0.000 -77: Mean: 0.000 0.000 0.000 -77: Max: 0.000 0.000 0.000 -77: Mean abs: 0.000 0.000 0.000 -77: Ave len: 0.000 -77: Jacobian: MINJAC 1 MAXJAC 1 -77: Energy: MINDIL 0 MAXDIL 0 -77: MAXSTRAIN 0 TOTSTRAIN 0 -77: Second derivatives: MINSECDER 0 MAXSECDER 0 -77: AVESECDER 0 INTSECDER 0 -77: Max second derivative at: (1 1 1) -77: -77: STDERR: -77: Not an error -61: RETVAL: 0 -61: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha -61: -61: STDERR: -61: Not an error -181/578 Test #77: vf-zero-stats ......................... Passed 0.43 sec -test 103 - Start 103: drr-b-stats - -103: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-b/out_0010.pfm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -103: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -103: Test timeout computed to be: 1500 -182/578 Test #61: roi-1 ................................. Passed 0.56 sec -test 106 - Start 106: drr-c-stats - -106: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=drr-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;drr-c/out_0010.pfm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -106: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -106: Test timeout computed to be: 1500 -79: RETVAL: 0 -79: STDOUT: Min: 10.000 0.000 0.000 -79: Mean: 10.000 0.000 0.000 -79: Max: 10.000 0.000 0.000 -79: Mean abs: 10.000 0.000 0.000 -79: Ave len: 10.000 -79: Jacobian: MINJAC 1 MAXJAC 1 -79: Energy: MINDIL 0 MAXDIL 0 -79: MAXSTRAIN 0 TOTSTRAIN 0 -79: Second derivatives: MINSECDER 0 MAXSECDER 0 -79: AVESECDER 0 INTSECDER 0 -79: Max second derivative at: (1 1 1) -79: -79: STDERR: -79: Not an error 103: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 103: PARMS is stats;drr-b/out_0010.pfm 103: EXPECTED_ERRNO is -183/578 Test #79: vf-trans-1-stats ...................... Passed 0.45 sec -test 109 - Start 109: fdk-cpu-a-stats - -109: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -109: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -109: Test timeout computed to be: 1500 106: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 106: PARMS is stats;drr-c/out_0010.pfm 106: EXPECTED_ERRNO is -109: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -109: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha -109: EXPECTED_ERRNO is -81: RETVAL: 0 -81: STDOUT: Min: 0.000 10.000 0.000 -81: Mean: 0.000 10.000 0.000 -81: Max: 0.000 10.000 0.000 -81: Mean abs: 0.000 10.000 0.000 -81: Ave len: 10.000 -81: Jacobian: MINJAC 1 MAXJAC 1 -81: Energy: MINDIL 0 MAXDIL 0 -81: MAXSTRAIN 0 TOTSTRAIN 0 -81: Second derivatives: MINSECDER 0 MAXSECDER 0 -81: AVESECDER 0 INTSECDER 0 -81: Max second derivative at: (1 1 1) -81: -81: STDERR: -81: Not an error -83: RETVAL: 0 -83: STDOUT: Min: -9.993 -9.993 -9.993 -83: Mean: 0.000 0.000 0.000 -83: Max: 9.993 9.993 9.993 -83: Mean abs: 5.157 5.157 5.157 -83: Ave len: 9.998 -83: Jacobian: MINJAC 1.05079 MAXJAC 2.37037 -83: Energy: MINDIL 0.0502 MAXDIL 1 -83: MAXSTRAIN 1.5 TOTSTRAIN 5055.08 -83: Second derivatives: MINSECDER 0 MAXSECDER 0.114 -83: AVESECDER 0.000227 INTSECDER 2.84e+04 -83: Max second derivative at: (20 19 17) -83: -83: STDERR: -83: Not an error -184/578 Test #81: vf-trans-2-stats ...................... Passed 0.46 sec -test 112 - Start 112: fdk-cpu-d-stats - -112: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -112: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -112: Test timeout computed to be: 1500 -87: RETVAL: 0 -87: STDOUT: Min: 10.000 -10.000 0.000 -87: Mean: 10.000 -10.000 0.000 -87: Max: 10.000 -10.000 0.000 -87: Mean abs: 10.000 10.000 0.000 -87: Ave len: 14.142 -87: -87: STDERR: -87: Not an error -185/578 Test #83: vf-radial-1-stats ..................... Passed 0.46 sec -186/578 Test #87: plm-compare-b ......................... Passed 0.40 sec -test 115 - Start 115: landmark-warp-a-stats-1 - -115: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -115: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -115: Test timeout computed to be: 1500 -test 117 - Start 117: landmark-warp-a-stats-2 - -117: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-a-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -117: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -117: Test timeout computed to be: 1500 -112: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -112: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha -112: EXPECTED_ERRNO is 115: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 115: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-img.mha 115: EXPECTED_ERRNO is -117: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -117: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha -117: EXPECTED_ERRNO is -375: RETVAL: 0 -375: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -375: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha -375: Launching registration worker thread -375: Inside registration worker thread -375: Doing registration stage -375: [1] xf_in->m_type = 0, xf_out->m_type = 0 -375: RESAMPLE 1 1: (1 1 1), (1 1 1) -375: RESAMPLE 1 1: (1 1 1), (1 1 1) -375: volume_calc_grad complete. -375: bspline_xform_initialize -375: Warning: vox_per_rgn was less than 4. -375: Warning: vox_per_rgn was less than 4. -375: Warning: vox_per_rgn was less than 4. -375: rdims = (10,10,10) -375: vox_per_rgn = (4,4,4) -375: cdims = (13 13 13) -375: Algorithm flavor = g -375: Threading = 0 -375: Regularization: flavor = a lambda = 1.000000 -375: >> Checking JH allocation -375: BSPLINE PARMS -375: max_its = 5 -375: max_feval = 5 -375: BSPLINE XFORM HEADER -375: vox_per_rgn = 4 4 4 -375: roi_offset = 0 0 0 -375: roi_dim = 38 38 38 -375: img_dc = 1 0 0 0 1 0 0 0 1 -375: BST METRICS -375: MET 110100 MSE 1.000000 -375: Setting nmax, mmax = 6591 83 -375: >>> START -375: This problem is unconstrained. -375: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 1.532 s ] -375: MSE 5540.166 RM 0.000 [ 0.148 | 1.384 ] -375: CMIN 0.00 CAVG 0.00 CMAX 0.00 -375: LSD 0.00 -375: [ 0, 1] SCORE 5484.185 NV 54872 GM 0.045 GN 27.7 [ 0.578 s ] -375: MSE 5484.124 RM 0.061 [ 0.012 | 0.565 ] -375: CMIN -0.16 CAVG -0.00 CMAX 0.22 -375: LSD 1.00 -375: [ 0, 2] SCORE 5267.761 NV 54872 GM 0.224 GN 25.8 [ 0.747 s ] -375: MSE 5266.236 RM 1.525 [ 0.020 | 0.727 ] -375: CMIN -0.81 CAVG 0.00 CMAX 1.12 -375: LSD 5.00 -375: [ 0, 3] SCORE 4511.430 NV 54872 GM 0.928 GN 18.4 [ 0.437 s ] -375: MSE 4484.536 RM 26.894 [ 0.014 | 0.423 ] -375: CMIN -3.39 CAVG 0.00 CMAX 4.70 -375: LSD 21.00 -375: [ 1, 4] SCORE 3229.400 NV 54872 GM 1.898 GN 2.39 [ 0.537 s ] -375: MSE 3018.981 RM 210.419 [ 0.012 | 0.525 ] -375: CMIN -9.73 CAVG -0.00 CMAX 13.18 -375: LSD 40.25 -375: [ 2, 5] SCORE 3185.099 NV 54872 GM 4.098 GN 2.08 [ 0.648 s ] -375: MSE 2976.101 RM 208.998 [ 0.024 | 0.625 ] -375: CMIN -9.60 CAVG -0.00 CMAX 13.44 -375: LSD 5.50 -375: [2] xf_out->m_type = 9, xf_in->m_type = 0 -375: ** Registration worker thread finished. -375: Writing transformation ... -375: Warping... -375: Running: plm_warp_native -375: Converting input image... -375: Converting xform... -375: bspline_xform_initialize -375: rdims = (10,10,10) -375: vox_per_rgn = (4,4,4) -375: cdims = (13 13 13) -375: Creating output vf... -375: Creating output volume... -375: Running native warper... -375: bspline_warp complete. -375: Back convert to original type... -375: > Convert vf to itk -375: > Conversion complete. -375: plm_warp_native is complete. -375: Saving image... -375: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-img.mha -375: Saving vf... -375: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha -375: Load: 0.150542 -375: Run: 4.74355 -375: Save: 0.0875521 -375: Total: 4.98165 -375: Finished! -375: -375: STDERR: -375: Not an error -100: RETVAL: 0 -100: STDOUT: Image center: 63.5 63.5 -100: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 -100: MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384 -100: -100: STDERR: -100: Not an error -187/578 Test #375: plm-bsp-regularize-numeric ............ Passed 5.72 sec -test 120 - Start 120: landmark-warp-b-stats-1 - -120: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -120: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -120: Test timeout computed to be: 1500 -188/578 Test #100: drr-a-stats ........................... Passed 0.37 sec -test 122 - Start 122: landmark-warp-b-stats-2 - -122: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-b-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -122: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -122: Test timeout computed to be: 1500 -122: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -122: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha -122: EXPECTED_ERRNO is -95: RETVAL: 0 -95: STDOUT: Min: 10.000 -10.000 0.000 -95: Mean: 10.000 -10.000 0.000 -95: Max: 10.000 -10.000 0.000 -95: Mean abs: 10.000 10.000 0.000 -95: Ave len: 14.142 -95: Jacobian: MINJAC 1 MAXJAC 1 -95: Energy: MINDIL 0 MAXDIL 0 -95: MAXSTRAIN 0 TOTSTRAIN 0 -95: Second derivatives: MINSECDER 0 MAXSECDER 0 -95: AVESECDER 0 INTSECDER 0 -95: Max second derivative at: (1 1 1) -95: -95: STDERR: -95: Not an error -106: RETVAL: 0 -106: STDOUT: Image center: 63.5 63.5 -106: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 -106: MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384 -106: -106: STDERR: -106: Not an error -189/578 Test #95: plm-diff-b-stats ...................... Passed 0.46 sec -test 125 - Start 125: landmark-warp-c-stats-1 - -125: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -125: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -125: Test timeout computed to be: 1500 -92: RETVAL: 0 -92: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872 -92: -92: STDERR: -92: Not an error -190/578 Test #106: drr-c-stats ........................... Passed 0.35 sec +165/578 Test #372: plm-bsp-regularize-analytic ........... Passed 2.02 sec +166/578 Test #412: plm-reg-multi-b ....................... Passed 1.84 sec +167/578 Test #430: plm-reg-trans-b ....................... Passed 1.80 sec +168/578 Test #39: rect-10 ............................... Passed 0.28 sec +169/578 Test #42: rect-11 ............................... Passed 0.27 sec test 127 Start 127: landmark-warp-c-stats-2 127: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-c-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 127: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 127: Test timeout computed to be: 1500 -120: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -120: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha -120: EXPECTED_ERRNO is -191/578 Test #92: plm-diff-a-stats ...................... Passed 0.51 sec test 131 Start 131: plm-add-a-stats 131: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 131: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 131: Test timeout computed to be: 1500 -85: RETVAL: 0 -85: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 -85: MAE 85.100204 MSE 18945.890625 -85: DIF 54872 NUM 54872 -85: -85: STDERR: -85: Not an error -192/578 Test #85: plm-compare-a ......................... Passed 0.68 sec test 134 Start 134: plm-add-b-stats 134: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 134: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 134: Test timeout computed to be: 1500 -127: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -127: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha -127: EXPECTED_ERRNO is -125: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -125: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha -125: EXPECTED_ERRNO is -103: RETVAL: 0 -103: STDOUT: Image center: 63.5 63.5 -103: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 -103: MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384 -103: -103: STDERR: -103: Not an error -131: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -131: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd -131: EXPECTED_ERRNO is -193/578 Test #103: drr-b-stats ........................... Passed 0.44 sec test 137 Start 137: plm-add-vf-a-stats 137: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 137: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 137: Test timeout computed to be: 1500 -134: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -134: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd -134: EXPECTED_ERRNO is -137: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -137: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd -137: EXPECTED_ERRNO is -89: RETVAL: 0 -89: STDOUT: Mask enabled. 512 / 54872 voxels inside mask -89: Min: 10.000 -10.000 0.000 -89: Mean: 10.000 -10.000 0.000 -89: Max: 10.000 -10.000 0.000 -89: Mean abs: 10.000 10.000 0.000 -89: Ave len: 14.142 -89: Min (mask): 10.000 -10.000 0.000 -89: Mean (mask): 10.000 -10.000 0.000 -89: Max (mask): 10.000 -10.000 0.000 -89: Mean abs (mask): 10.000 10.000 0.000 -89: Ave len (mask): 14.142 -89: -89: STDERR: -89: Not an error -194/578 Test #89: plm-compare-c ......................... Passed 0.79 sec test 140 Start 140: plm-add-vf-b-stats 140: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-add-vf-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 140: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 140: Test timeout computed to be: 1500 -115: RETVAL: 0 -115: STDOUT: MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872 -115: -115: STDERR: -115: Not an error +117: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +117: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-vf.mha +117: EXPECTED_ERRNO is +120: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +120: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-img.mha +120: EXPECTED_ERRNO is +122: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +122: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-b-vf.mha +122: EXPECTED_ERRNO is +125: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +125: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-img.mha +125: EXPECTED_ERRNO is +127: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +127: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha +127: EXPECTED_ERRNO is +131: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +131: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a.nrrd +131: EXPECTED_ERRNO is +134: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +134: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b.nrrd +134: EXPECTED_ERRNO is +137: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +137: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a.nrrd +137: EXPECTED_ERRNO is 140: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 140: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b.nrrd 140: EXPECTED_ERRNO is -195/578 Test #115: landmark-warp-a-stats-1 ............... Passed 0.56 sec +51: RETVAL: 0 +51: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha +51: +51: STDERR: +51: Not an error +170/578 Test #51: rect-19 ............................... Passed 0.23 sec test 143 Start 143: plm-adjust-a-stats 143: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 143: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 143: Test timeout computed to be: 1500 -112: RETVAL: 0 -112: STDOUT: MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 -112: -112: STDERR: -112: Not an error -122: RETVAL: 0 -122: STDOUT: Min: -30.672 -0.800 -0.000 -122: Mean: -1.500 0.018 0.000 -122: Max: 0.000 1.506 0.000 -122: Mean abs: 1.500 0.042 0.000 -122: Ave len: 1.502 -122: Jacobian: MINJAC 0.647844 MAXJAC 1.23013 -122: Energy: MINDIL -0.353 MAXDIL 0.231386 -122: MAXSTRAIN 0.259 TOTSTRAIN 179.715 -122: Second derivatives: MINSECDER 0 MAXSECDER 0.0443 -122: AVESECDER 0.000472 INTSECDER 5.89e+04 -122: Max second derivative at: (17 23 15) -122: -122: STDERR: -122: Not an error -143: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -143: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd -143: EXPECTED_ERRNO is -196/578 Test #112: fdk-cpu-d-stats ....................... Passed 0.65 sec -197/578 Test #122: landmark-warp-b-stats-2 ............... Passed 0.46 sec +21: RETVAL: 0 +21: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha +21: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Body.mha +21: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Tumor.mha +21: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-prefix/Lung.mha +21: Doing extraction +21: Keyholizing structure 0. +21: Keyholizing structure 1. +21: Keyholizing structure 2. +21: Write: DoseGridScaling = 0.000000 +21: +21: STDERR: +21: Not an error +171/578 Test #21: lung-1 ................................ Passed 3.14 sec +test 193 + Start 193: plm-convert-dicom-c + +193: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +193: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +193: Test timeout computed to be: 1500 +103: RETVAL: 0 +103: STDOUT: Image center: 63.5 63.5 +103: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 +103: MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384 +103: +103: STDERR: +103: Not an error +172/578 Test #103: drr-b-stats ........................... Passed 0.16 sec test 146 Start 146: plm-adjust-b-stats 146: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 146: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 146: Test timeout computed to be: 1500 +143: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +143: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a.nrrd +143: EXPECTED_ERRNO is +193: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +193: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1-dicom/;--output-prefix;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix +193: EXPECTED_ERRNO is +53: RETVAL: 0 +53: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha +53: +53: STDERR: +61: RETVAL: 0 +61: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/roi-1.mha +61: +61: STDERR: +61: Not an error +173/578 Test #61: roi-1 ................................. Passed 0.25 sec test 149 Start 149: plm-adjust-c-stats 149: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 149: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 149: Test timeout computed to be: 1500 -149: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -149: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd -149: EXPECTED_ERRNO is -146: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -146: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd -146: EXPECTED_ERRNO is -134: RETVAL: 0 -134: STDOUT: MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872 -134: -134: STDERR: -134: Not an error -198/578 Test #134: plm-add-b-stats ....................... Passed 0.46 sec +53: Not an error +100: RETVAL: 0 +100: STDOUT: Image center: 63.5 63.5 +100: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 +100: MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384 +100: +100: STDERR: +100: Not an error +55: RETVAL: 0 +55: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-01.mha +55: +55: STDERR: +55: Not an error +174/578 Test #53: rectarr-01 ............................ Passed 0.28 sec +175/578 Test #100: drr-a-stats ........................... Passed 0.19 sec test 152 Start 152: plm-adjust-d-stats 152: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 152: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 152: Test timeout computed to be: 1500 -109: RETVAL: 0 -109: STDOUT: MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 -109: -109: STDERR: -109: Not an error -117: RETVAL: 0 -117: STDOUT: Min: -62.465 -4.112 -0.000 -117: Mean: -22.960 0.011 0.000 -117: Max: 16.278 4.199 0.000 -117: Mean abs: 25.589 1.505 0.000 -117: Ave len: 25.766 -117: Jacobian: MINJAC 1.12686 MAXJAC 1.15895 -117: Energy: MINDIL 0.128 MAXDIL 0.157995 -117: MAXSTRAIN 0.171 TOTSTRAIN 7133.92 -117: Second derivatives: MINSECDER 2.92e-10 MAXSECDER 0.000557 -117: AVESECDER 7.93e-07 INTSECDER 99.2 -117: Max second derivative at: (24 15 22) -117: -117: STDERR: -117: Not an error -199/578 Test #117: landmark-warp-a-stats-2 ............... Passed 0.71 sec test 155 Start 155: plm-adjust-e-stats 155: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-e-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 155: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 155: Test timeout computed to be: 1500 -131: RETVAL: 0 -131: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872 -131: -131: STDERR: -200/578 Test #109: fdk-cpu-a-stats ....................... Passed 0.83 sec +65: RETVAL: 0 +65: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha +65: +65: STDERR: +65: Not an error +176/578 Test #55: rectarr-m-01 .......................... Passed 0.28 sec test 158 Start 158: plm-adjust-f-stats 158: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-f-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 158: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 158: Test timeout computed to be: 1500 -131: Not an error +81: RETVAL: 0 +81: STDOUT: Min: 0.000 10.000 0.000 +81: Mean: 0.000 10.000 0.000 +81: Max: 0.000 10.000 0.000 +81: Mean abs: 0.000 10.000 0.000 +81: Ave len: 10.000 +81: Jacobian: MINJAC 1 MAXJAC 1 +81: Energy: MINDIL 0 MAXDIL 0 +81: MAXSTRAIN 0 TOTSTRAIN 0 +81: Second derivatives: MINSECDER 0 MAXSECDER 0 +81: AVESECDER 0 INTSECDER 0 +81: Max second derivative at: (1 1 1) +81: +81: STDERR: +146: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +146: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b.nrrd +146: EXPECTED_ERRNO is +149: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +149: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c.nrrd +149: EXPECTED_ERRNO is 152: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 152: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d.nrrd 152: EXPECTED_ERRNO is -127: RETVAL: 0 -127: STDOUT: Min: -27.760 -0.518 -0.000 -127: Mean: -1.562 0.019 0.000 -127: Max: -0.000 1.063 0.000 -127: Mean abs: 1.562 0.037 0.000 -127: Ave len: 1.563 -127: Jacobian: MINJAC 0.698803 MAXJAC 1.18578 -127: Energy: MINDIL -0.302 MAXDIL 0.186636 -127: MAXSTRAIN 0.205 TOTSTRAIN 143.999 -127: Second derivatives: MINSECDER 2.31e-17 MAXSECDER 0.0141 -127: AVESECDER 0.000315 INTSECDER 3.94e+04 -127: Max second derivative at: (17 22 16) -127: -127: STDERR: -127: Not an error -120: RETVAL: 0 -120: STDOUT: MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872 -120: -120: STDERR: -120: Not an error -201/578 Test #127: landmark-warp-c-stats-2 ............... Passed 0.53 sec +54: RETVAL: 0 +54: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha +54: +54: STDERR: +54: Not an error +155: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +155: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd +155: EXPECTED_ERRNO is +79: RETVAL: 0 +79: STDOUT: Min: 10.000 0.000 0.000 +79: Mean: 10.000 0.000 0.000 +79: Max: 10.000 0.000 0.000 +79: Mean abs: 10.000 0.000 0.000 +79: Ave len: 10.000 +79: Jacobian: MINJAC 1 MAXJAC 1 +79: Energy: MINDIL 0 MAXDIL 0 +79: MAXSTRAIN 0 TOTSTRAIN 0 +79: Second derivatives: MINSECDER 0 MAXSECDER 0 +79: AVESECDER 0 INTSECDER 0 +79: Max second derivative at: (1 1 1) +79: +79: STDERR: +79: Not an error +77: RETVAL: 0 +77: STDOUT: Min: 0.000 0.000 0.000 +77: Mean: 0.000 0.000 0.000 +77: Max: 0.000 0.000 0.000 +77: Mean abs: 0.000 0.000 0.000 +77: Ave len: 0.000 +77: Jacobian: MINJAC 1 MAXJAC 1 +77: Energy: MINDIL 0 MAXDIL 0 +77: MAXSTRAIN 0 TOTSTRAIN 0 +77: Second derivatives: MINSECDER 0 MAXSECDER 0 +77: AVESECDER 0 INTSECDER 0 +77: Max second derivative at: (1 1 1) +77: +77: STDERR: +77: Not an error +89: RETVAL: 0 +89: STDOUT: Mask enabled. 512 / 54872 voxels inside mask +89: Min: 10.000 -10.000 0.000 +89: Mean: 10.000 -10.000 0.000 +89: Max: 10.000 -10.000 0.000 +89: Mean abs: 10.000 10.000 0.000 +89: Ave len: 14.142 +89: Min (mask): 10.000 -10.000 0.000 +89: Mean (mask): 10.000 -10.000 0.000 +89: Max (mask): 10.000 -10.000 0.000 +89: Mean abs (mask): 10.000 10.000 0.000 +89: Ave len (mask): 14.142 +89: +89: STDERR: +89: Not an error +95: RETVAL: 0 +95: STDOUT: Min: 10.000 -10.000 0.000 +95: Mean: 10.000 -10.000 0.000 +95: Max: 10.000 -10.000 0.000 +95: Mean abs: 10.000 10.000 0.000 +95: Ave len: 14.142 +95: Jacobian: MINJAC 1 MAXJAC 1 +95: Energy: MINDIL 0 MAXDIL 0 +95: MAXSTRAIN 0 TOTSTRAIN 0 +95: Second derivatives: MINSECDER 0 MAXSECDER 0 +95: AVESECDER 0 INTSECDER 0 +95: Max second derivative at: (1 1 1) +95: +95: STDERR: +95: Not an error +83: RETVAL: 0 +83: STDOUT: Min: -9.993 -9.993 -9.993 +83: Mean: 0.000 0.000 0.000 +83: Max: 9.993 9.993 9.993 +83: Mean abs: 5.157 5.157 5.157 +83: Ave len: 9.998 +83: Jacobian: MINJAC 1.05079 MAXJAC 2.37037 +83: Energy: MINDIL 0.0502 MAXDIL 1 +83: MAXSTRAIN 1.5 TOTSTRAIN 5055.08 +83: Second derivatives: MINSECDER 0 MAXSECDER 0.114 +83: AVESECDER 0.000227 INTSECDER 2.84e+04 +83: Max second derivative at: (20 19 17) +83: +83: STDERR: +85: RETVAL: 0 +85: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 +85: MAE 85.100204 MSE 18945.890625 +85: DIF 54872 NUM 54872 +85: +85: STDERR: +85: Not an error +87: RETVAL: 0 +87: STDOUT: Min: 10.000 -10.000 0.000 +87: Mean: 10.000 -10.000 0.000 +87: Max: 10.000 -10.000 0.000 +87: Mean abs: 10.000 10.000 0.000 +87: Ave len: 14.142 +87: +87: STDERR: +177/578 Test #54: rectarr-02 ............................ Passed 0.38 sec +178/578 Test #65: sphere-4 .............................. Passed 0.36 sec +179/578 Test #79: vf-trans-1-stats ...................... Passed 0.35 sec test 161 Start 161: plm-adjust-g-stats 161: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-g-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 161: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 161: Test timeout computed to be: 1500 -202/578 Test #120: landmark-warp-b-stats-1 ............... Passed 0.62 sec test 164 Start 164: plm-adjust-h-stats 164: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-h-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 164: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 164: Test timeout computed to be: 1500 -203/578 Test #131: plm-add-a-stats ....................... Passed 0.55 sec test 167 Start 167: plm-adjust-i-stats 167: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-i-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 167: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 167: Test timeout computed to be: 1500 -161: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -161: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd -161: EXPECTED_ERRNO is -155: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -155: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e.nrrd -155: EXPECTED_ERRNO is +81: Not an error +180/578 Test #77: vf-zero-stats ......................... Passed 0.36 sec +181/578 Test #89: plm-compare-c ......................... Passed 0.50 sec +83: Not an error +182/578 Test #85: plm-compare-a ......................... Passed 0.51 sec +87: Not an error 158: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 158: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f.nrrd 158: EXPECTED_ERRNO is -167: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -167: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd -167: EXPECTED_ERRNO is -164: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -164: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd -164: EXPECTED_ERRNO is -125: RETVAL: 0 -125: STDOUT: MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872 -125: -125: STDERR: -125: Not an error -204/578 Test #125: landmark-warp-c-stats-1 ............... Passed 0.70 sec +183/578 Test #81: vf-trans-2-stats ...................... Passed 0.52 sec +184/578 Test #83: vf-radial-1-stats ..................... Passed 0.52 sec +185/578 Test #87: plm-compare-b ......................... Passed 0.50 sec +186/578 Test #95: plm-diff-b-stats ...................... Passed 0.48 sec test 170 Start 170: plm-adjust-j-stats 170: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-adjust-j-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 170: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 170: Test timeout computed to be: 1500 -137: RETVAL: 0 -137: STDOUT: Min: 20.000 0.000 0.000 -137: Mean: 20.000 0.000 0.000 -137: Max: 20.000 0.000 0.000 -137: Mean abs: 20.000 0.000 0.000 -137: Ave len: 20.000 -137: Jacobian: MINJAC 1 MAXJAC 1 -137: Energy: MINDIL 0 MAXDIL 0 -137: MAXSTRAIN 0 TOTSTRAIN 0 -137: Second derivatives: MINSECDER 0 MAXSECDER 0 -137: AVESECDER 0 INTSECDER 0 -137: Max second derivative at: (1 1 1) -137: -137: STDERR: -137: Not an error -205/578 Test #137: plm-add-vf-a-stats .................... Passed 0.65 sec test 173 Start 173: plm-boundary-a-stats 173: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 173: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 173: Test timeout computed to be: 1500 -170: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -170: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd -170: EXPECTED_ERRNO is -173: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -173: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd -173: EXPECTED_ERRNO is -152: RETVAL: 0 -152: STDOUT: MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872 -152: -152: STDERR: -152: Not an error -140: RETVAL: 0 -140: STDOUT: Min: 5.000 5.000 0.000 -140: Mean: 5.000 5.000 0.000 -140: Max: 5.000 5.000 0.000 -140: Mean abs: 5.000 5.000 0.000 -140: Ave len: 7.071 -140: Jacobian: MINJAC 1 MAXJAC 1 -140: Energy: MINDIL 0 MAXDIL 0 -140: MAXSTRAIN 0 TOTSTRAIN 0 -140: Second derivatives: MINSECDER 0 MAXSECDER 0 -140: AVESECDER 0 INTSECDER 0 -140: Max second derivative at: (1 1 1) -140: -140: STDERR: -146: RETVAL: 0 -146: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 -146: -146: STDERR: -146: Not an error -206/578 Test #152: plm-adjust-d-stats .................... Passed 0.41 sec test 176 Start 176: plm-boundary-b-stats 176: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 176: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 176: Test timeout computed to be: 1500 -149: RETVAL: 0 -149: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 -149: -149: STDERR: -207/578 Test #146: plm-adjust-b-stats .................... Passed 0.51 sec test 179 Start 179: plm-boundary-c-stats 179: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 179: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 179: Test timeout computed to be: 1500 -176: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -176: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd -176: EXPECTED_ERRNO is -140: Not an error -208/578 Test #140: plm-add-vf-b-stats .................... Passed 0.79 sec test 182 Start 182: plm-boundary-d-stats 182: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 182: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 182: Test timeout computed to be: 1500 -149: Not an error -209/578 Test #149: plm-adjust-c-stats .................... Passed 0.66 sec test 185 Start 185: plm-boundary-e-stats 185: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-boundary-e-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 185: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 185: Test timeout computed to be: 1500 -158: RETVAL: 0 -158: STDOUT: MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872 -158: -158: STDERR: -158: Not an error -179: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -179: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd -179: EXPECTED_ERRNO is -210/578 Test #158: plm-adjust-f-stats .................... Passed 0.59 sec test 188 Start 188: plm-convert-dicom-a-stats 188: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 188: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 188: Test timeout computed to be: 1500 -143: RETVAL: 0 -143: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 -143: -143: STDERR: -143: Not an error -182: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -182: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd -182: EXPECTED_ERRNO is -185: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -185: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd -185: EXPECTED_ERRNO is -188: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -188: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha -188: EXPECTED_ERRNO is -211/578 Test #143: plm-adjust-a-stats .................... Passed 0.79 sec -test 191 - Start 191: plm-convert-dicom-b-stats - -191: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/dicom_info" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -191: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -191: Test timeout computed to be: 1500 -164: RETVAL: 0 -164: STDOUT: MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872 -164: -164: STDERR: -164: Not an error -173: RETVAL: 0 -173: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000 -173: -173: STDERR: -173: Not an error -212/578 Test #173: plm-boundary-a-stats .................. Passed 0.44 sec -test 194 - Start 194: plm-convert-dicom-c-stats - -194: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -194: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -194: Test timeout computed to be: 1500 +115: RETVAL: 0 +115: STDOUT: MIN -1000.000000 AVE -991.799744 MAX 0.000000 NONZERO 54494 NUMVOX 54872 +115: +115: STDERR: +115: Not an error +106: RETVAL: 0 +106: STDOUT: Image center: 63.5 63.5 +106: Projection matrix: -1.86502e-08 -0.213333 0 0 0 0 -0.213333 0 0.000666667 -5.82819e-11 0 0.666667 +106: MIN 0.000000 AVE 0.000125 MAX 0.050494 NUM 16384 +106: +106: STDERR: +106: Not an error +56: RETVAL: 0 +56: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-m-02.mha +56: +56: STDERR: +56: Not an error +134: RETVAL: 0 +134: STDOUT: MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872 +134: +134: STDERR: +134: Not an error +167: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +167: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-i.nrrd +167: EXPECTED_ERRNO is +164: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +164: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h.nrrd +164: EXPECTED_ERRNO is +161: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +161: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-g.nrrd +161: EXPECTED_ERRNO is +92: RETVAL: 0 +92: STDOUT: MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872 +92: +92: STDERR: +92: Not an error +120: RETVAL: 0 +120: STDOUT: MIN -1000.000122 AVE -992.005493 MAX 0.000000 NONZERO 54512 NUMVOX 54872 +120: +120: STDERR: +120: Not an error +117: RETVAL: 0 +117: STDOUT: Min: -62.465 -4.112 -0.000 +117: Mean: -22.960 0.011 0.000 +117: Max: 16.278 4.199 0.000 +117: Mean abs: 25.589 1.505 0.000 +117: Ave len: 25.766 +117: Jacobian: MINJAC 1.12686 MAXJAC 1.15895 +117: Energy: MINDIL 0.128 MAXDIL 0.157995 +117: MAXSTRAIN 0.171 TOTSTRAIN 7133.92 +117: Second derivatives: MINSECDER 2.92e-10 MAXSECDER 0.000557 +117: AVESECDER 7.93e-07 INTSECDER 99.2 +117: Max second derivative at: (24 15 22) +117: +117: STDERR: +117: Not an error +108: RETVAL: 0 +108: STDOUT: Reconstructing... +108: Processing image 0 +108: Processing image 1 +108: Processing image 2 +108: Processing image 3 +108: Processing image 4 +108: Processing image 5 +108: Processing image 6 +108: Processing image 7 +108: Processing image 8 +108: Processing image 9 +108: Processing image 10 +108: Processing image 11 +108: Processing image 12 +108: Processing image 13 +108: Processing image 14 +108: Processing image 15 +108: Processing image 16 +108: Processing image 17 +108: Processing image 18 +108: Processing image 19 +108: I/O time (total) = 0.225688 +108: I/O time (per image) = 0.0112844 +108: Filter time = 0 +108: Filter time (per image) = 0 +108: Backprojection time = 0.472705 +108: Backprojection time (per image) = 0.0236352 +108: Writing output volume(s)... +108: done. +108: +108: +108: STDERR: +108: Not an error +122: RETVAL: 0 +122: STDOUT: Min: -30.672 -0.800 -0.000 +122: Mean: -1.500 0.018 0.000 +122: Max: 0.000 1.506 0.000 +122: Mean abs: 1.500 0.042 0.000 +122: Ave len: 1.502 +122: Jacobian: MINJAC 0.647844 MAXJAC 1.23013 +122: Energy: MINDIL -0.353 MAXDIL 0.231386 +122: MAXSTRAIN 0.259 TOTSTRAIN 179.715 +122: Second derivatives: MINSECDER 0 MAXSECDER 0.0443 +122: AVESECDER 0.000472 INTSECDER 5.89e+04 +122: Max second derivative at: (17 23 15) +122: +122: STDERR: +122: Not an error +127: RETVAL: 0 +127: STDOUT: Min: -27.760 -0.518 -0.000 +127: Mean: -1.562 0.019 0.000 +127: Max: -0.000 1.063 0.000 +127: Mean abs: 1.562 0.037 0.000 +127: Ave len: 1.563 +127: Jacobian: MINJAC 0.698803 MAXJAC 1.18578 +127: Energy: MINDIL -0.302 MAXDIL 0.186636 +127: MAXSTRAIN 0.205 TOTSTRAIN 143.999 +127: Second derivatives: MINSECDER 2.31e-17 MAXSECDER 0.0141 +127: AVESECDER 0.000315 INTSECDER 3.94e+04 +127: Max second derivative at: (17 22 16) +127: +127: STDERR: +127: Not an error +131: RETVAL: 0 +131: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872 +131: +131: STDERR: +131: Not an error +125: RETVAL: 0 +125: STDOUT: MIN -1000.000122 AVE -991.665894 MAX 0.000000 NONZERO 54484 NUMVOX 54872 +125: +125: STDERR: +125: Not an error +140: RETVAL: 0 +140: STDOUT: Min: 5.000 5.000 0.000 +140: Mean: 5.000 5.000 0.000 +140: Max: 5.000 5.000 0.000 +140: Mean abs: 5.000 5.000 0.000 +140: Ave len: 7.071 +140: Jacobian: MINJAC 1 MAXJAC 1 +140: Energy: MINDIL 0 MAXDIL 0 +140: MAXSTRAIN 0 TOTSTRAIN 0 +140: Second derivatives: MINSECDER 0 MAXSECDER 0 +140: AVESECDER 0 INTSECDER 0 +140: Max second derivative at: (1 1 1) +140: +140: STDERR: +140: Not an error +137: RETVAL: 0 +137: STDOUT: Min: 20.000 0.000 0.000 +137: Mean: 20.000 0.000 0.000 +137: Max: 20.000 0.000 0.000 +137: Mean abs: 20.000 0.000 0.000 +137: Ave len: 20.000 +137: Jacobian: MINJAC 1 MAXJAC 1 +137: Energy: MINDIL 0 MAXDIL 0 +137: MAXSTRAIN 0 TOTSTRAIN 0 +137: Second derivatives: MINSECDER 0 MAXSECDER 0 +137: AVESECDER 0 INTSECDER 0 +137: Max second derivative at: (1 1 1) +137: +137: STDERR: +137: Not an error 97: RETVAL: 0 97: STDOUT: Fixed = /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 97: Moving = /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -14269,57 +14000,57 @@ 97: kerx: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 97: kery: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 97: kerz: 0.1629140526 0.2174074054 0.2393570840 0.2174074054 0.1629140526 -97: MSE [ 0] 18945.6 (1.000) [ 0.039 secs] -97: MSE [ 1] 18945.6 (1.000) [ 0.021 secs] -97: MSE [ 2] 18980.9 (0.995) [ 0.022 secs] -97: MSE [ 3] 18885.4 (0.970) [ 0.046 secs] -97: MSE [ 4] 18084.9 (0.966) [ 0.022 secs] -97: MSE [ 5] 17034.7 (0.966) [ 0.033 secs] -97: MSE [ 6] 15346.9 (0.946) [ 0.027 secs] -97: MSE [ 7] 14427.2 (0.940) [ 0.021 secs] -97: MSE [ 8] 13561.7 (0.935) [ 0.021 secs] -97: MSE [ 9] 12732.2 (0.928) [ 0.022 secs] -97: MSE [ 10] 12276.6 (0.923) [ 0.020 secs] -97: MSE [ 11] 11827.4 (0.920) [ 0.021 secs] -97: MSE [ 12] 11399.6 (0.920) [ 0.020 secs] -97: MSE [ 13] 11078.4 (0.919) [ 0.020 secs] -97: MSE [ 14] 10787.4 (0.918) [ 0.051 secs] -97: MSE [ 15] 10317.6 (0.915) [ 0.047 secs] -97: MSE [ 16] 9735.2 (0.913) [ 0.056 secs] -97: MSE [ 17] 9362.8 (0.911) [ 0.043 secs] -97: MSE [ 18] 8947.5 (0.909) [ 0.038 secs] -97: MSE [ 19] 8534.4 (0.899) [ 0.033 secs] -97: MSE [ 20] 7953.5 (0.895) [ 0.022 secs] -97: MSE [ 21] 7656.6 (0.893) [ 0.021 secs] -97: MSE [ 22] 7364.0 (0.892) [ 0.021 secs] -97: MSE [ 23] 7174.2 (0.892) [ 0.021 secs] -97: MSE [ 24] 6956.3 (0.891) [ 0.021 secs] -97: MSE [ 25] 6512.1 (0.890) [ 0.022 secs] -97: MSE [ 26] 6079.0 (0.890) [ 0.021 secs] -97: MSE [ 27] 5716.1 (0.889) [ 0.022 secs] -97: MSE [ 28] 5454.8 (0.889) [ 0.021 secs] -97: MSE [ 29] 5201.5 (0.889) [ 0.020 secs] -97: MSE [ 30] 5013.3 (0.888) [ 0.021 secs] -97: MSE [ 31] 4840.3 (0.888) [ 0.025 secs] -97: MSE [ 32] 4652.0 (0.887) [ 0.020 secs] -97: MSE [ 33] 4400.6 (0.886) [ 0.021 secs] -97: MSE [ 34] 4085.1 (0.883) [ 0.021 secs] -97: MSE [ 35] 3778.0 (0.882) [ 0.021 secs] -97: MSE [ 36] 3521.6 (0.882) [ 0.022 secs] -97: MSE [ 37] 3308.2 (0.882) [ 0.022 secs] -97: MSE [ 38] 3126.2 (0.881) [ 0.021 secs] -97: MSE [ 39] 2988.9 (0.881) [ 0.024 secs] -97: MSE [ 40] 2836.4 (0.880) [ 0.041 secs] -97: MSE [ 41] 2736.6 (0.881) [ 0.021 secs] -97: MSE [ 42] 2623.3 (0.880) [ 0.021 secs] -97: MSE [ 43] 2426.1 (0.880) [ 0.020 secs] -97: MSE [ 44] 2271.4 (0.879) [ 0.020 secs] -97: MSE [ 45] 2112.0 (0.880) [ 0.021 secs] -97: MSE [ 46] 1926.2 (0.879) [ 0.033 secs] -97: MSE [ 47] 1775.3 (0.880) [ 0.032 secs] -97: MSE [ 48] 1621.0 (0.878) [ 0.025 secs] -97: MSE [ 49] 1504.3 (0.878) [ 0.030 secs] -97: Time for 50 iterations = 1.321020 (0.026420 sec / it) +97: MSE [ 0] 18945.6 (1.000) [ 0.009 secs] +97: MSE [ 1] 18945.6 (1.000) [ 0.007 secs] +97: MSE [ 2] 18980.9 (0.995) [ 0.006 secs] +97: MSE [ 3] 18885.4 (0.970) [ 0.007 secs] +97: MSE [ 4] 18084.9 (0.966) [ 0.006 secs] +97: MSE [ 5] 17034.7 (0.966) [ 0.006 secs] +97: MSE [ 6] 15346.9 (0.946) [ 0.008 secs] +97: MSE [ 7] 14427.2 (0.940) [ 0.008 secs] +97: MSE [ 8] 13561.7 (0.935) [ 0.009 secs] +97: MSE [ 9] 12732.2 (0.928) [ 0.008 secs] +97: MSE [ 10] 12276.6 (0.923) [ 0.007 secs] +97: MSE [ 11] 11827.4 (0.920) [ 0.005 secs] +97: MSE [ 12] 11399.6 (0.920) [ 0.004 secs] +97: MSE [ 13] 11078.4 (0.919) [ 0.004 secs] +97: MSE [ 14] 10787.4 (0.918) [ 0.004 secs] +97: MSE [ 15] 10317.6 (0.915) [ 0.004 secs] +97: MSE [ 16] 9735.2 (0.913) [ 0.004 secs] +97: MSE [ 17] 9362.8 (0.911) [ 0.004 secs] +97: MSE [ 18] 8947.5 (0.909) [ 0.004 secs] +97: MSE [ 19] 8534.4 (0.899) [ 0.004 secs] +97: MSE [ 20] 7953.5 (0.895) [ 0.005 secs] +97: MSE [ 21] 7656.6 (0.893) [ 0.004 secs] +97: MSE [ 22] 7364.0 (0.892) [ 0.007 secs] +97: MSE [ 23] 7174.2 (0.892) [ 0.007 secs] +97: MSE [ 24] 6956.3 (0.891) [ 0.005 secs] +97: MSE [ 25] 6512.1 (0.890) [ 0.005 secs] +97: MSE [ 26] 6079.0 (0.890) [ 0.008 secs] +97: MSE [ 27] 5716.1 (0.889) [ 0.008 secs] +97: MSE [ 28] 5454.8 (0.889) [ 0.007 secs] +97: MSE [ 29] 5201.5 (0.889) [ 0.007 secs] +97: MSE [ 30] 5013.3 (0.888) [ 0.007 secs] +97: MSE [ 31] 4840.3 (0.888) [ 0.006 secs] +97: MSE [ 32] 4652.0 (0.887) [ 0.007 secs] +97: MSE [ 33] 4400.6 (0.886) [ 0.004 secs] +97: MSE [ 34] 4085.1 (0.883) [ 0.004 secs] +97: MSE [ 35] 3778.0 (0.882) [ 0.004 secs] +97: MSE [ 36] 3521.6 (0.882) [ 0.004 secs] +97: MSE [ 37] 3308.2 (0.882) [ 0.004 secs] +97: MSE [ 38] 3126.2 (0.881) [ 0.004 secs] +97: MSE [ 39] 2988.9 (0.881) [ 0.004 secs] +97: MSE [ 40] 2836.4 (0.880) [ 0.004 secs] +97: MSE [ 41] 2736.6 (0.881) [ 0.004 secs] +97: MSE [ 42] 2623.3 (0.880) [ 0.004 secs] +97: MSE [ 43] 2426.1 (0.880) [ 0.004 secs] +97: MSE [ 44] 2271.4 (0.879) [ 0.004 secs] +97: MSE [ 45] 2112.0 (0.880) [ 0.004 secs] +97: MSE [ 46] 1926.2 (0.879) [ 0.004 secs] +97: MSE [ 47] 1775.3 (0.880) [ 0.004 secs] +97: MSE [ 48] 1621.0 (0.878) [ 0.004 secs] +97: MSE [ 49] 1504.3 (0.878) [ 0.004 secs] +97: Time for 50 iterations = 0.264884 (0.005298 sec / it) 97: Min: 1.248 -5.701 -5.701 97: Mean: 3.443 0.016 0.016 97: Max: 7.379 5.617 5.617 @@ -14335,176 +14066,7 @@ 97: vf = 1.315789 0.000000 0.000000 ... 97: 97: STDERR: -213/578 Test #164: plm-adjust-h-stats .................... Passed 0.63 sec -test 200 - Start 200: plm-convert-dicom-donut-a-stats - -200: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -200: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -200: Test timeout computed to be: 1500 97: Not an error -161: RETVAL: 0 -161: STDOUT: MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872 -161: -161: STDERR: -161: Not an error -191: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/dicom_info -191: PARMS is --input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm -191: EXPECTED_ERRNO is -214/578 Test #97: demons-a .............................. Passed 1.63 sec -215/578 Test #161: plm-adjust-g-stats .................... Passed 0.65 sec -test 203 - Start 203: plm-convert-dicom-donut-b-stats - -203: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -203: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -203: Test timeout computed to be: 1500 -test 207 - Start 207: plm-convert-cxt-stats - -207: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -207: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -207: Test timeout computed to be: 1500 -203: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -203: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd -203: EXPECTED_ERRNO is -200: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -200: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd -200: EXPECTED_ERRNO is -170: RETVAL: 0 -170: STDOUT: MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872 -170: -170: STDERR: -170: Not an error -194: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -194: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha -194: EXPECTED_ERRNO is -207: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -207: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha -207: EXPECTED_ERRNO is -155: RETVAL: 0 -155: STDOUT: MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872 -155: -155: STDERR: -155: Not an error -167: RETVAL: 0 -167: STDOUT: MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872 -167: -167: STDERR: -167: Not an error -216/578 Test #167: plm-adjust-i-stats .................... Passed 0.68 sec -217/578 Test #170: plm-adjust-j-stats .................... Passed 0.55 sec -test 209 - Start 209: plm-convert-prefix-fcsv - -209: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-prefix-fcsv" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -209: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -209: Test timeout computed to be: 1500 -test 211 - Start 211: plm-convert-dose-scale-stats - -211: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -211: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -211: Test timeout computed to be: 1500 -218/578 Test #155: plm-adjust-e-stats .................... Passed 0.76 sec -test 214 - Start 214: plm-crop-a-stats - -214: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -214: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -214: Test timeout computed to be: 1500 -209: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -209: PARMS is convert;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5 -209: EXPECTED_ERRNO is -214: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -214: PARMS is header;plm-crop-a.mha -214: EXPECTED_ERRNO is -176: RETVAL: 0 -176: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000 -176: -176: STDERR: -176: Not an error -219/578 Test #176: plm-boundary-b-stats .................. Passed 0.42 sec -test 217 - Start 217: plm-crop-b-stats - -217: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -217: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -217: Test timeout computed to be: 1500 -211: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -211: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha -211: EXPECTED_ERRNO is -191: RETVAL: 0 -191: STDOUT: Reading input file: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm -191: Specific Character Set = ISO_IR 100 -191: Image Type = DERIVED\SECONDARY\AXIAL -191: Instance Creation Date = 20240603 -191: Instance Creation Time = 085652 -191: SOP Class UID = 1.2.840.10008.5.1.4.1.1.2 -191: SOP Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.1650355.1717448216.739894 -191: Study Date = 20240603 -191: Series Date = -191: Study Time = 085652 -191: Series Time = -191: Accession Number = -191: Modality = CT -191: Manufacturer = Plastimatch -191: Referring Physician's Name = -191: Station Name = -191: Study Description = -191: Series Description = -191: Operators' Name = -191: Manufacturer's Model Name = Plastimatch -191: Patient's Name = ANONYMOUS -191: Patient ID = PL357628677799702 -191: Patient's Birth Date = -191: Patient's Sex = O -191: Slice Thickness = 13.157895 -191: KVP = -191: Device Serial Number = -191: Software Version(s) = 1.9.4 -191: Patient Position = FFS -191: Study Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.1650355.1717448216.739874 -191: Series Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.1650355.1717448216.739891 -191: Study ID = -191: Series Number = -191: Acquisition Number = -191: Instance Number = 0 -191: Image Position (Patient) = -243.421051\-243.421051\-243.421051 -191: Image Orientation (Patient) = 1.000000\0.000000\0.000000\0.000000\1.000000\0.000000 -191: Frame of Reference UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.1650355.1717448216.739875 -191: Position Reference Indicator = SP -191: Slice Location = -243.421051 -191: Samples per Pixel = 1 -191: Photometric Interpretation = MONOCHROME2 -191: Rows = 38 -191: Columns = 38 -191: Pixel Spacing = 13.157895\13.157895 -191: Bits Allocated = 16 -191: Bits Stored = 16 -191: High Bit = 15 -191: Pixel Representation = 1 -191: Window Center = 40 -191: Window Width = 400 -191: Rescale Intercept = -1000.000000 -191: Rescale Slope = 1.000000 -191: Rescale Type = HU -191: -191: STDERR: -191: Not an error -220/578 Test #191: plm-convert-dicom-b-stats ............. Passed 0.24 sec -test 220 - Start 220: plm-crop-c-stats - -220: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-c.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -220: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -220: Test timeout computed to be: 1500 -217: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -217: PARMS is header;plm-crop-b.mha -217: EXPECTED_ERRNO is -220: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -220: PARMS is header;plm-crop-c.mha -220: EXPECTED_ERRNO is 556: RETVAL: 0 556: STDOUT: 556: [PLAN] @@ -14579,242 +14141,464 @@ 556: Primary PB num. x, y: 21, 21, primary PB res. x, y: 1 PB/mm, 1 PB/mm 556: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha 556: Sigma: 0.000000 seconds -556: Calc: 2.257657 seconds -556: IO: 0.083812 seconds +556: Calc: 0.851071 seconds +556: IO: 0.094839 seconds 556: Reformat: 0.000000 seconds -556: Misc: 0.006755 seconds +556: Misc: 0.005096 seconds 556: done. 556: -556: Total execution time : 2.384394 seconds. +556: Total execution time : 0.975674 seconds. 556: 556: STDERR: 556: Not an error -221/578 Test #556: proton-dose-1 ......................... Passed 2.85 sec +187/578 Test #108: fdk-cpu-a ............................. Passed 1.19 sec +188/578 Test #56: rectarr-m-02 .......................... Passed 0.57 sec +189/578 Test #92: plm-diff-a-stats ...................... Passed 0.51 sec +190/578 Test #97: demons-a .............................. Passed 0.50 sec +191/578 Test #106: drr-c-stats ........................... Passed 0.48 sec +192/578 Test #115: landmark-warp-a-stats-1 ............... Passed 0.48 sec +193/578 Test #117: landmark-warp-a-stats-2 ............... Passed 0.47 sec +194/578 Test #120: landmark-warp-b-stats-1 ............... Passed 0.47 sec +195/578 Test #122: landmark-warp-b-stats-2 ............... Passed 0.46 sec +196/578 Test #125: landmark-warp-c-stats-1 ............... Passed 0.46 sec +197/578 Test #127: landmark-warp-c-stats-2 ............... Passed 0.45 sec +198/578 Test #131: plm-add-a-stats ....................... Passed 0.44 sec +199/578 Test #134: plm-add-b-stats ....................... Passed 0.44 sec +200/578 Test #137: plm-add-vf-a-stats .................... Passed 0.43 sec +201/578 Test #140: plm-add-vf-b-stats .................... Passed 0.42 sec +test 109 + Start 109: fdk-cpu-a-stats + +109: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +109: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +109: Test timeout computed to be: 1500 +test 191 + Start 191: plm-convert-dicom-b-stats + +191: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/dicom_info" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +191: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +191: Test timeout computed to be: 1500 +test 200 + Start 200: plm-convert-dicom-donut-a-stats + +200: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +200: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +200: Test timeout computed to be: 1500 +test 203 + Start 203: plm-convert-dicom-donut-b-stats + +203: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +203: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +203: Test timeout computed to be: 1500 +test 207 + Start 207: plm-convert-cxt-stats + +207: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-cxt-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +207: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +207: Test timeout computed to be: 1500 +test 209 + Start 209: plm-convert-prefix-fcsv + +209: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-prefix-fcsv" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +209: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +209: Test timeout computed to be: 1500 +test 211 + Start 211: plm-convert-dose-scale-stats + +211: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dose-scale-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +211: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +211: Test timeout computed to be: 1500 +test 214 + Start 214: plm-crop-a-stats + +214: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +214: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +214: Test timeout computed to be: 1500 +test 217 + Start 217: plm-crop-b-stats + +217: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +217: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +217: Test timeout computed to be: 1500 +test 220 + Start 220: plm-crop-c-stats + +220: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-crop-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-crop-c.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +220: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +220: Test timeout computed to be: 1500 test 222 Start 222: plm-dice-a 222: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 222: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 222: Test timeout computed to be: 1500 -222: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -222: PARMS is dice;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha -222: EXPECTED_ERRNO is -182: RETVAL: 0 -182: STDOUT: MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000 -182: -182: STDERR: -182: Not an error -203: RETVAL: 0 -203: STDOUT: SS_IMAGE: At most 16 structures -203: S 0 NVOX 1924 -203: S 1 NVOX 0 -203: S 2 NVOX 0 -203: S 3 NVOX 0 -203: S 4 NVOX 0 -203: S 5 NVOX 0 -203: S 6 NVOX 0 -203: S 7 NVOX 0 -203: S 8 NVOX 0 -203: S 9 NVOX 0 -203: S 10 NVOX 0 -203: S 11 NVOX 0 -203: S 12 NVOX 0 -203: S 13 NVOX 0 -203: S 14 NVOX 0 -203: S 15 NVOX 0 -203: -203: STDERR: -203: Not an error -222/578 Test #203: plm-convert-dicom-donut-b-stats ....... Passed 0.47 sec test 224 Start 224: plm-dice-b 224: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 224: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 224: Test timeout computed to be: 1500 -223/578 Test #182: plm-boundary-d-stats .................. Passed 0.63 sec test 226 Start 226: plm-dice-c 226: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 226: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 226: Test timeout computed to be: 1500 -179: RETVAL: 0 -179: STDOUT: MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000 -179: -179: STDERR: -179: Not an error -214: RETVAL: 0 -214: STDOUT: Type = float -214: Planes = 1 -214: Origin = -18.4211 -21.0526 -15.7895 -214: Size = 11 16 3 -214: Spacing = 1.3158 1.3158 1.3158 -214: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -214: -214: STDERR: -214: Not an error -224/578 Test #179: plm-boundary-c-stats .................. Passed 0.71 sec test 232 Start 232: plm-dice-d 232: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--hausdorff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 232: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 232: Test timeout computed to be: 1500 -225/578 Test #214: plm-crop-a-stats ...................... Passed 0.49 sec test 238 Start 238: plm-dice-e 238: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;0 0;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 238: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 238: Test timeout computed to be: 1500 -224: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -224: PARMS is dice;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha -224: EXPECTED_ERRNO is -226: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -226: PARMS is dice;--hausdorff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha -226: EXPECTED_ERRNO is -232: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -232: PARMS is dice;--hausdorff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha -232: EXPECTED_ERRNO is -238: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -238: PARMS is dice;--all;--zcrop;0 0;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd -238: EXPECTED_ERRNO is -211: RETVAL: 0 -211: STDOUT: MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872 -211: -211: STDERR: -211: Not an error -226/578 Test #211: plm-convert-dose-scale-stats .......... Passed 0.79 sec +161: RETVAL: 0 +161: STDOUT: MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872 +161: +161: STDERR: +161: Not an error +202/578 Test #556: proton-dose-1 ......................... Passed 1.24 sec +170: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +170: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-j.nrrd +170: EXPECTED_ERRNO is +176: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +176: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b.nrrd +176: EXPECTED_ERRNO is +173: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +173: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-a.nrrd +173: EXPECTED_ERRNO is +182: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +182: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d.nrrd +182: EXPECTED_ERRNO is +179: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +179: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c.nrrd +179: EXPECTED_ERRNO is +185: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +185: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e.nrrd +185: EXPECTED_ERRNO is +188: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +188: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-ss.mha +188: EXPECTED_ERRNO is +158: RETVAL: 0 +158: STDOUT: MIN -0.107574 AVE -0.019504 MAX 0.207060 NONZERO 54872 NUMVOX 54872 +158: +158: STDERR: +158: Not an error +149: RETVAL: 0 +149: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 +149: +149: STDERR: +149: Not an error +143: RETVAL: 0 +143: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 +143: +143: STDERR: +143: Not an error +155: RETVAL: 0 +155: STDOUT: MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872 +155: +155: STDERR: +155: Not an error +109: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +109: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a.mha +109: EXPECTED_ERRNO is +191: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/dicom_info +191: PARMS is --input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm +191: EXPECTED_ERRNO is +200: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +200: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-ss.nrrd +200: EXPECTED_ERRNO is +203: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +203: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-ss.nrrd +203: EXPECTED_ERRNO is +207: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +207: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt.mha +207: EXPECTED_ERRNO is +209: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +209: PARMS is convert;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7.mha;--input-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt;--output-prefix-fcsv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv;--simplify-perc;0.5 +209: EXPECTED_ERRNO is +211: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +211: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale.mha +211: EXPECTED_ERRNO is +214: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +214: PARMS is header;plm-crop-a.mha +214: EXPECTED_ERRNO is +220: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +220: PARMS is header;plm-crop-c.mha +220: EXPECTED_ERRNO is +203/578 Test #143: plm-adjust-a-stats .................... Passed 0.41 sec +204/578 Test #149: plm-adjust-c-stats .................... Passed 0.36 sec +205/578 Test #155: plm-adjust-e-stats .................... Passed 0.34 sec +206/578 Test #158: plm-adjust-f-stats .................... Passed 0.25 sec +207/578 Test #161: plm-adjust-g-stats .................... Passed 0.24 sec test 241 Start 241: plm-dice-f 241: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dice-f" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dice;--all;--zcrop;10 10;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 241: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 241: Test timeout computed to be: 1500 -241: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -241: PARMS is dice;--all;--zcrop;10 10;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd -241: EXPECTED_ERRNO is -222: RETVAL: 0 -222: STDOUT: CENTER_OF_MASS -222: ref 4.18425e-05 7.62939e-06 7.62939e-06 -222: cmp 19.7369 7.62939e-06 7.62939e-06 -222: TP: 384 -222: TN: 54296 -222: FN: 128 -222: FP: 64 -222: DICE: 0.800000 -222: SE: 0.750000 -222: SP: 0.998823 -222: -222: STDERR: -222: Not an error -227/578 Test #222: plm-dice-a ............................ Passed 0.68 sec test 245 Start 245: plm-dmap-b 245: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;danielsson;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 245: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 245: Test timeout computed to be: 1500 -245: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -245: PARMS is dmap;--algorithm;danielsson;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance -245: EXPECTED_ERRNO is -232: RETVAL: 0 -232: STDOUT: Hausdorff distance = 45.580288 -232: Avg average Hausdorff distance = 7.072703 -232: Max average Hausdorff distance = 12.121115 -232: Percent (0.95) Hausdorff distance = 22.694012 -232: Hausdorff distance (boundary) = 45.580288 -232: Avg average Hausdorff distance (boundary) = 14.894061 -232: Max average Hausdorff distance (boundary) = 18.384613 -232: Percent (0.95) Hausdorff distance (boundary) = 32.894737 -232: -232: STDERR: -232: Not an error -228/578 Test #232: plm-dice-d ............................ Passed 0.59 sec test 247 Start 247: plm-dvh-a 247: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 247: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 247: Test timeout computed to be: 1500 -220: RETVAL: 0 -220: STDOUT: Type = float -220: Planes = 1 -220: Origin = -9.2105 -9.2105 -9.2105 -220: Size = 15 15 15 -220: Spacing = 1.3158 1.3158 1.3158 -220: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -220: -220: STDERR: -220: Not an error -229/578 Test #220: plm-crop-c-stats ...................... Passed 0.97 sec test 250 Start 250: plm-dvh-b 250: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--input-dose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 250: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 250: Test timeout computed to be: 1500 -188: RETVAL: 0 -188: STDOUT: SS_IMAGE: At most 16 structures -188: S 0 NVOX 1648003 -188: S 1 NVOX 0 -188: S 2 NVOX 0 -188: S 3 NVOX 0 -188: S 4 NVOX 0 -188: S 5 NVOX 0 -188: S 6 NVOX 0 -188: S 7 NVOX 0 -188: S 8 NVOX 0 -188: S 9 NVOX 0 -188: S 10 NVOX 0 -188: S 11 NVOX 0 -188: S 12 NVOX 0 -188: S 13 NVOX 0 -188: S 14 NVOX 0 -188: S 15 NVOX 0 -188: -188: STDERR: -188: Not an error -230/578 Test #188: plm-convert-dicom-a-stats ............. Passed 1.27 sec test 253 Start 253: plm-dvh-c 253: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dvh-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dvh;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-csv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 253: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 253: Test timeout computed to be: 1500 -247: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -247: PARMS is dvh;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv -247: EXPECTED_ERRNO is -224: RETVAL: 0 -224: STDOUT: Time = 0.005027 seconds -224: Time = 0.018519 seconds -224: CENTER_OF_MASS -224: ref 8.39233e-05 8.47711e-06 8.47711e-06 -224: cmp 8.39233e-05 8.47711e-06 8.47711e-06 -224: TP: 729 -224: TN: 103094 -224: FN: 0 -224: FP: 0 -224: DICE: 1.000000 -224: SE: 1.000000 -224: SP: 1.000000 -224: -224: STDERR: -224: Not an error -231/578 Test #224: plm-dice-b ............................ Passed 0.77 sec test 257 Start 257: plm-fill-a-stats 257: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-fill-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 257: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 257: Test timeout computed to be: 1500 -253: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -253: PARMS is dvh;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-csv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv -253: EXPECTED_ERRNO is +217: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +217: PARMS is header;plm-crop-b.mha +217: EXPECTED_ERRNO is +146: RETVAL: 0 +146: STDOUT: MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872 +146: +146: STDERR: +146: Not an error +222: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +222: PARMS is dice;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha +222: EXPECTED_ERRNO is +224: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +224: PARMS is dice;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-9.mha +224: EXPECTED_ERRNO is +167: RETVAL: 0 +167: STDOUT: MIN -1000.000000 AVE -921.594055 MAX -4.987521 NONZERO 54872 NUMVOX 54872 +167: +167: STDERR: +167: Not an error +226: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +226: PARMS is dice;--hausdorff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha +226: EXPECTED_ERRNO is +232: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +232: PARMS is dice;--hausdorff;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-6.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-8.mha +232: EXPECTED_ERRNO is +238: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +238: PARMS is dice;--all;--zcrop;0 0;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd +238: EXPECTED_ERRNO is +164: RETVAL: 0 +164: STDOUT: MIN -0.283680 AVE -0.248078 MAX 0.156631 NONZERO 54872 NUMVOX 54872 +164: +164: STDERR: +164: Not an error +241: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +241: PARMS is dice;--all;--zcrop;10 10;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-2.nrrd;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/cyl-3.nrrd +241: EXPECTED_ERRNO is +208/578 Test #146: plm-adjust-b-stats .................... Passed 0.40 sec +209/578 Test #167: plm-adjust-i-stats .................... Passed 0.26 sec +test 260 + Start 260: plm-mask-a-stats + +260: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-mask-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +260: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +260: Test timeout computed to be: 1500 +test 263 + Start 263: plm-gamma-a-stats + +263: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +263: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +263: Test timeout computed to be: 1500 +152: RETVAL: 0 +152: STDOUT: MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872 +152: +152: STDERR: +152: Not an error +245: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +245: PARMS is dmap;--algorithm;danielsson;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha;--absolute-distance +245: EXPECTED_ERRNO is 250: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 250: PARMS is dvh;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt;--input-dose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv 250: EXPECTED_ERRNO is +210/578 Test #152: plm-adjust-d-stats .................... Passed 0.38 sec +211/578 Test #164: plm-adjust-h-stats .................... Passed 0.27 sec +test 266 + Start 266: plm-gamma-b-stats + +266: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +266: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +266: Test timeout computed to be: 1500 +test 268 + Start 268: plm-gamma-c + +268: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +268: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +268: Test timeout computed to be: 1500 +247: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +247: PARMS is dvh;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss.mha;--input-dose;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dose-img.mha;--output-csv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv +247: EXPECTED_ERRNO is +253: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +253: PARMS is dvh;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom;--output-csv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv +253: EXPECTED_ERRNO is +257: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +257: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha +257: EXPECTED_ERRNO is +260: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +260: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha +260: EXPECTED_ERRNO is +263: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +263: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha +263: EXPECTED_ERRNO is +268: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +268: PARMS is gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha +268: EXPECTED_ERRNO is +266: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +266: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha +266: EXPECTED_ERRNO is +191: RETVAL: 0 +191: STDOUT: Reading input file: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-dicom/image0000.dcm +191: Specific Character Set = ISO_IR 100 +191: Image Type = DERIVED\SECONDARY\AXIAL +191: Instance Creation Date = 20250707 +191: Instance Creation Time = 172854 +191: SOP Class UID = 1.2.840.10008.5.1.4.1.1.2 +191: SOP Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3209116.1751858935.73662 +191: Study Date = 20250707 +191: Series Date = +191: Study Time = 172854 +191: Series Time = +191: Accession Number = +191: Modality = CT +191: Manufacturer = Plastimatch +191: Referring Physician's Name = +191: Station Name = +191: Study Description = +191: Series Description = +191: Operators' Name = +191: Manufacturer's Model Name = Plastimatch +191: Patient's Name = ANONYMOUS +191: Patient ID = PL944909114091202 +191: Patient's Birth Date = +191: Patient's Sex = O +191: Slice Thickness = 13.157895 +191: KVP = +191: Device Serial Number = +191: Software Version(s) = 1.9.4 +191: Patient Position = FFS +191: Study Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3209116.1751858935.73642 +191: Series Instance UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3209116.1751858935.73659 +191: Study ID = +191: Series Number = +191: Acquisition Number = +191: Instance Number = 0 +191: Image Position (Patient) = -243.421051\-243.421051\-243.421051 +191: Image Orientation (Patient) = 1.000000\0.000000\0.000000\0.000000\1.000000\0.000000 +191: Frame of Reference UID = 1.2.826.0.1.3680043.8.274.1.1.8323329.3209116.1751858935.73643 +191: Position Reference Indicator = SP +191: Slice Location = -243.421051 +191: Samples per Pixel = 1 +191: Photometric Interpretation = MONOCHROME2 +191: Rows = 38 +191: Columns = 38 +191: Pixel Spacing = 13.157895\13.157895 +191: Bits Allocated = 16 +191: Bits Stored = 16 +191: High Bit = 15 +191: Pixel Representation = 1 +191: Window Center = 40 +191: Window Width = 400 +191: Rescale Intercept = -1000.000000 +191: Rescale Slope = 1.000000 +191: Rescale Type = HU +191: +191: STDERR: +191: Not an error +212/578 Test #191: plm-convert-dicom-b-stats ............. Passed 0.16 sec +test 270 + Start 270: plm-gamma-d + +270: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +270: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +270: Test timeout computed to be: 1500 +22: RETVAL: 0 +22: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha +22: Doing extraction +22: Keyholizing structure 0. +22: Keyholizing structure 1. +22: Keyholizing structure 2. +22: Write: DoseGridScaling = 0.000000 +22: +22: STDERR: +22: Not an error +213/578 Test #22: lung-2 ................................ Passed 3.24 sec +test 273 + Start 273: plm-maximum-a-stats + +273: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-maximum-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +273: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +273: Test timeout computed to be: 1500 +270: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +270: PARMS is gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha +270: EXPECTED_ERRNO is +273: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +273: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd +273: EXPECTED_ERRNO is +182: RETVAL: 0 +182: STDOUT: MIN 0.000000 AVE 2.614500 MAX 56.000000 NONZERO 1056 NUMVOX 8000 +182: +182: STDERR: +182: Not an error +214/578 Test #182: plm-boundary-d-stats .................. Passed 0.22 sec +test 276 + Start 276: plm-multiply-a-stats + +276: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +276: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +276: Test timeout computed to be: 1500 +179: RETVAL: 0 +179: STDOUT: MIN 0.000000 AVE 0.105000 MAX 1.000000 NONZERO 840 NUMVOX 8000 +179: +179: STDERR: +179: Not an error +215/578 Test #179: plm-boundary-c-stats .................. Passed 0.23 sec +test 279 + Start 279: plm-multiply-vf-a-stats + +279: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +279: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +279: Test timeout computed to be: 1500 +170: RETVAL: 0 +170: STDOUT: MIN -1000.000000 AVE -921.627502 MAX -4.987521 NONZERO 54872 NUMVOX 54872 +170: +170: STDERR: +170: Not an error +173: RETVAL: 0 +173: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000 +173: +173: STDERR: +173: Not an error +276: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +276: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd +276: EXPECTED_ERRNO is +216/578 Test #170: plm-adjust-j-stats .................... Passed 0.27 sec +test 283 + Start 283: plm-reg-align-center-stats + +283: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +283: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +283: Test timeout computed to be: 1500 200: RETVAL: 0 200: STDOUT: SS_IMAGE: At most 16 structures 200: S 0 NVOX 2623 @@ -14836,51 +14620,99 @@ 200: 200: STDERR: 200: Not an error -232/578 Test #200: plm-convert-dicom-donut-a-stats ....... Passed 1.32 sec -test 260 - Start 260: plm-mask-a-stats +193: RETVAL: 0 +193: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205385.1751858936.353422RTDOSE +193: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205385.1751858936.353423RTSTRUCT +193: Found DCM_ReferencedFrameOfReferenceSequence! +193: Found DCM_RTReferencedStudySequence! +193: Trying to load rt dose. +193: Load: DoseGridScaling = 0.000000 +193: RTDOSE: dim = 100 100 100 +193: ipp = -247.500000 -247.500000 -247.500000 +193: spc = 5.000000 5.000000 5.000000 +193: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +193: Bits_alloc: 32 +193: Bits_stored: 32 +193: High_bit: 31 +193: Pixel_rep: 0 +193: rc = 1, length = 2000000, npix = 1000000 +193: Trying to load rt structure set. +193: Adding structure (1), Body +193: Adding structure (2), Tumor +193: Adding structure (3), Lung +193: Structure 1 has color 255\0\0 +193: Structure 2 has color 255\255\0 +193: Structure 3 has color 255\0\255 +193: Setting PIH from RDD +193: PIH is: +193: Origin = -247.5000 -247.5000 -247.5000 +193: Size = 100 100 100 +193: Spacing = 5.0000 5.0000 5.0000 +193: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +193: Rt_study_warp: Convert ss_img to cxt. +193: Rt_study_warp: Apply dicom_dir. +193: Rt_study_warp: Set geometry from PIH. +193: Rt_study_warp: Set rasterization geometry. +193: rast_dim = 512 512 99 +193: rast_offset = -157.5 -157.5 -247.5 +193: rast_spacing = 0.615234 0.615234 5 +193: Rt_study_warp: warp and save ss. +193: Warp_and_save_ss: seg->rasterize +193: Rasterizing... +193: Converting... +193: Finished rasterization. +193: Warp_and_save_ss: save_ss_img +193: save_ss_img: save_prefix +193: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Body.mha +193: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha +193: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Lung.mha +193: Finished! +193: +193: STDERR: +193: Not an error +176: RETVAL: 0 +176: STDOUT: MIN 0.000000 AVE 0.132000 MAX 1.000000 NONZERO 1056 NUMVOX 8000 +176: +176: STDERR: +176: Not an error +226: RETVAL: 0 +226: STDOUT: Hausdorff distance = 26.315790 +226: Avg average Hausdorff distance = 3.406955 +226: Max average Hausdorff distance = 4.934211 +226: Percent (0.95) Hausdorff distance = 19.736843 +226: Hausdorff distance (boundary) = 26.315790 +226: Avg average Hausdorff distance (boundary) = 7.115030 +226: Max average Hausdorff distance (boundary) = 8.534851 +226: Percent (0.95) Hausdorff distance (boundary) = 26.315790 +226: +226: STDERR: +226: Not an error +217/578 Test #193: plm-convert-dicom-c ................... Passed 0.60 sec +218/578 Test #173: plm-boundary-a-stats .................. Passed 0.28 sec +219/578 Test #200: plm-convert-dicom-donut-a-stats ....... Passed 0.25 sec +test 194 + Start 194: plm-convert-dicom-c-stats -260: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-mask-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -260: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -260: Test timeout computed to be: 1500 -238: RETVAL: 0 -238: STDOUT: CENTER_OF_MASS -238: ref 0 0 7.5 -238: cmp 0 0 5 -238: TP: 22120 -238: TN: 6300 -238: FN: 1580 -238: FP: 0 -238: DICE: 0.965517 -238: SE: 0.933333 -238: SP: 1.000000 -238: Hausdorff distance = 4.000000 -238: Avg average Hausdorff distance = 0.067568 -238: Max average Hausdorff distance = 0.135135 -238: Percent (0.95) Hausdorff distance = 0.500000 -238: Hausdorff distance (boundary) = 4.000000 -238: Avg average Hausdorff distance (boundary) = 0.244043 -238: Max average Hausdorff distance (boundary) = 0.334483 -238: Percent (0.95) Hausdorff distance (boundary) = 2.500000 -238: -238: STDERR: -238: Not an error -233/578 Test #238: plm-dice-e ............................ Passed 0.77 sec -test 263 - Start 263: plm-gamma-a-stats +194: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +194: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +194: Test timeout computed to be: 1500 +test 286 + Start 286: plm-reg-itk-translation-stats -263: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -263: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -263: Test timeout computed to be: 1500 -257: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -257: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a.mha -257: EXPECTED_ERRNO is -260: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -260: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a.mha -260: EXPECTED_ERRNO is -263: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -263: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a.mha -263: EXPECTED_ERRNO is +286: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +286: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +286: Test timeout computed to be: 1500 +test 289 + Start 289: plm-reg-itk-rigid-a-stats-1 + +289: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +289: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +289: Test timeout computed to be: 1500 +220/578 Test #176: plm-boundary-b-stats .................. Passed 0.30 sec +221/578 Test #226: plm-dice-c ............................ Passed 0.24 sec +279: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +279: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd +279: EXPECTED_ERRNO is 217: RETVAL: 0 217: STDOUT: Type = float 217: Planes = 1 @@ -14896,20 +14728,211 @@ 185: 185: STDERR: 185: Not an error -234/578 Test #185: plm-boundary-e-stats .................. Passed 1.63 sec -test 266 - Start 266: plm-gamma-b-stats +232: RETVAL: 0 +232: STDOUT: Hausdorff distance = 45.580288 +232: Avg average Hausdorff distance = 7.072703 +232: Max average Hausdorff distance = 12.121115 +232: Percent (0.95) Hausdorff distance = 22.694012 +232: Hausdorff distance (boundary) = 45.580288 +232: Avg average Hausdorff distance (boundary) = 14.894061 +232: Max average Hausdorff distance (boundary) = 18.384613 +232: Percent (0.95) Hausdorff distance (boundary) = 32.894737 +232: +232: STDERR: +232: Not an error +203: RETVAL: 0 +203: STDOUT: SS_IMAGE: At most 16 structures +203: S 0 NVOX 1924 +203: S 1 NVOX 0 +203: S 2 NVOX 0 +203: S 3 NVOX 0 +203: S 4 NVOX 0 +203: S 5 NVOX 0 +203: S 6 NVOX 0 +203: S 7 NVOX 0 +203: S 8 NVOX 0 +203: S 9 NVOX 0 +203: S 10 NVOX 0 +203: S 11 NVOX 0 +203: S 12 NVOX 0 +203: S 13 NVOX 0 +203: S 14 NVOX 0 +203: S 15 NVOX 0 +203: +203: STDERR: +203: Not an error +222/578 Test #185: plm-boundary-e-stats .................. Passed 0.29 sec +223/578 Test #217: plm-crop-b-stats ...................... Passed 0.26 sec +test 291 + Start 291: plm-reg-itk-rigid-a-stats-2 -266: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -266: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -266: Test timeout computed to be: 1500 -235/578 Test #217: plm-crop-b-stats ...................... Passed 1.42 sec -test 268 - Start 268: plm-gamma-c +291: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +291: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +291: Test timeout computed to be: 1500 +test 294 + Start 294: plm-reg-itk-similarity-stats-1 -268: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -268: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -268: Test timeout computed to be: 1500 +294: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +294: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +294: Test timeout computed to be: 1500 +test 296 + Start 296: plm-reg-itk-similarity-stats-2 + +296: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +296: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +296: Test timeout computed to be: 1500 +test 299 + Start 299: plm-reg-itk-bspline-stats-1 + +299: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +299: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +299: Test timeout computed to be: 1500 +283: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +283: PARMS is compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha +283: EXPECTED_ERRNO is +211: RETVAL: 0 +211: STDOUT: MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872 +211: +211: STDERR: +211: Not an error +188: RETVAL: 0 +188: STDOUT: SS_IMAGE: At most 16 structures +188: S 0 NVOX 1648003 +188: S 1 NVOX 0 +188: S 2 NVOX 0 +188: S 3 NVOX 0 +188: S 4 NVOX 0 +188: S 5 NVOX 0 +188: S 6 NVOX 0 +188: S 7 NVOX 0 +188: S 8 NVOX 0 +188: S 9 NVOX 0 +188: S 10 NVOX 0 +188: S 11 NVOX 0 +188: S 12 NVOX 0 +188: S 13 NVOX 0 +188: S 14 NVOX 0 +188: S 15 NVOX 0 +188: +188: STDERR: +188: Not an error +286: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +286: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha +286: EXPECTED_ERRNO is +214: RETVAL: 0 +214: STDOUT: Type = float +214: Planes = 1 +214: Origin = -18.4211 -21.0526 -15.7895 +214: Size = 11 16 3 +214: Spacing = 1.3158 1.3158 1.3158 +214: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +214: +214: STDERR: +214: Not an error +194: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +194: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-prefix/Tumor.mha +194: EXPECTED_ERRNO is +289: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +289: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha +289: EXPECTED_ERRNO is +224: RETVAL: 0 +224: STDOUT: Time = 0.004035 seconds +224: Time = 0.003594 seconds +224: CENTER_OF_MASS +224: ref 8.39233e-05 8.47711e-06 8.47711e-06 +224: cmp 8.39233e-05 8.47711e-06 8.47711e-06 +224: TP: 729 +224: TN: 103094 +224: FN: 0 +224: FP: 0 +224: DICE: 1.000000 +224: SE: 1.000000 +224: SP: 1.000000 +224: +224: STDERR: +224: Not an error +291: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +291: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha +291: EXPECTED_ERRNO is +224/578 Test #188: plm-convert-dicom-a-stats ............. Passed 0.31 sec +225/578 Test #203: plm-convert-dicom-donut-b-stats ....... Passed 0.30 sec +226/578 Test #211: plm-convert-dose-scale-stats .......... Passed 0.29 sec +227/578 Test #214: plm-crop-a-stats ...................... Passed 0.29 sec +228/578 Test #232: plm-dice-d ............................ Passed 0.27 sec +test 303 + Start 303: plm-reg-itk-demons-stats-2 + +303: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +303: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +303: Test timeout computed to be: 1500 +test 305 + Start 305: plm-reg-itk-demons-diff + +305: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-diff" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +305: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +305: Test timeout computed to be: 1500 +test 307 + Start 307: plm-reg-itk-demons-logd + +307: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-logd" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +307: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +307: Test timeout computed to be: 1500 +test 309 + Start 309: plm-reg-itk-demons-sym-logd + +309: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-sym-logd" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +309: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +309: Test timeout computed to be: 1500 +test 312 + Start 312: plm-bsp-mse-c-stats + +312: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +312: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +312: Test timeout computed to be: 1500 +229/578 Test #224: plm-dice-b ............................ Passed 0.31 sec +245: RETVAL: 0 +245: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha +245: +245: STDERR: +245: Not an error +296: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +296: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha +296: EXPECTED_ERRNO is +294: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +294: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha +294: EXPECTED_ERRNO is +263: RETVAL: 0 +263: STDOUT: MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000 +263: +263: STDERR: +263: Not an error +299: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +299: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha +299: EXPECTED_ERRNO is +222: RETVAL: 0 +222: STDOUT: CENTER_OF_MASS +222: ref 4.18425e-05 7.62939e-06 7.62939e-06 +222: cmp 19.7369 7.62939e-06 7.62939e-06 +222: TP: 384 +222: TN: 54296 +222: FN: 128 +222: FP: 64 +222: DICE: 0.800000 +222: SE: 0.750000 +222: SP: 0.998823 +222: +222: STDERR: +222: Not an error +247: RETVAL: 0 +247: STDOUT: Creating Histogram... +247: Your Histogram will have 256 bins and will be 0.500000 Gy large +247: checking voxel size... +247: 13.1579 13.1579 13.1579 +247: 13.1579 13.1579 13.1579 +247: Dose and ss-img have the same size. Resample not necessary. +247: +247: STDERR: +247: Not an error 207: RETVAL: 0 207: STDOUT: SS_IMAGE: At most 16 structures 207: S 0 NVOX 1648003 @@ -14930,23 +14953,67 @@ 207: S 15 NVOX 0 207: 207: STDERR: -207: Not an error -236/578 Test #207: plm-convert-cxt-stats ................. Passed 1.56 sec -test 270 - Start 270: plm-gamma-d +230/578 Test #222: plm-dice-a ............................ Passed 0.35 sec +231/578 Test #245: plm-dmap-b ............................ Passed 0.34 sec +232/578 Test #247: plm-dvh-a ............................. Passed 0.33 sec +233/578 Test #263: plm-gamma-a-stats ..................... Passed 0.31 sec +test 315 + Start 315: plm-bsp-mse-g-stats -270: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-gamma-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -270: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -270: Test timeout computed to be: 1500 -266: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -266: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b.mha -266: EXPECTED_ERRNO is -270: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -270: PARMS is gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha;--ref-only-threshold;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha -270: EXPECTED_ERRNO is -268: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -268: PARMS is gamma;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-03.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-04.mha -268: EXPECTED_ERRNO is +315: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +315: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +315: Test timeout computed to be: 1500 +test 318 + Start 318: plm-bsp-mse-h-stats + +318: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +318: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +318: Test timeout computed to be: 1500 +test 321 + Start 321: plm-bsp-mse-i-stats + +321: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +321: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +321: Test timeout computed to be: 1500 +test 324 + Start 324: plm-bsp-mse-k-stats + +324: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +324: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +324: Test timeout computed to be: 1500 +test 327 + Start 327: plm-bsp-mse-l-stats + +327: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +327: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +327: Test timeout computed to be: 1500 +303: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +303: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha +303: EXPECTED_ERRNO is +305: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +305: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt +305: EXPECTED_ERRNO is +238: RETVAL: 0 +238: STDOUT: CENTER_OF_MASS +238: ref 0 0 7.5 +238: cmp 0 0 5 +238: TP: 22120 +238: TN: 6300 +238: FN: 1580 +238: FP: 0 +238: DICE: 0.965517 +238: SE: 0.933333 +238: SP: 1.000000 +238: Hausdorff distance = 4.000000 +238: Avg average Hausdorff distance = 0.067568 +238: Max average Hausdorff distance = 0.135135 +238: Percent (0.95) Hausdorff distance = 0.500000 +238: Hausdorff distance (boundary) = 4.000000 +238: Avg average Hausdorff distance (boundary) = 0.244043 +238: Max average Hausdorff distance (boundary) = 0.334483 +238: Percent (0.95) Hausdorff distance (boundary) = 2.500000 +238: +238: STDERR: 241: RETVAL: 0 241: STDOUT: CENTER_OF_MASS 241: ref 0 0 7.5 @@ -14968,103 +15035,85 @@ 241: Percent (0.95) Hausdorff distance (boundary) = 0.000000 241: 241: STDERR: -226: RETVAL: 0 -226: STDOUT: Hausdorff distance = 26.315790 -226: Avg average Hausdorff distance = 3.406955 -226: Max average Hausdorff distance = 4.934211 -226: Percent (0.95) Hausdorff distance = 19.736843 -226: Hausdorff distance (boundary) = 26.315790 -226: Avg average Hausdorff distance (boundary) = 7.115030 -226: Max average Hausdorff distance (boundary) = 8.534851 -226: Percent (0.95) Hausdorff distance (boundary) = 26.315790 -226: -226: STDERR: 241: Not an error -226: Not an error -237/578 Test #241: plm-dice-f ............................ Passed 0.88 sec -test 273 - Start 273: plm-maximum-a-stats - -273: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-maximum-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -273: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -273: Test timeout computed to be: 1500 -194: RETVAL: 0 -194: STDOUT: MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000 -194: -194: STDERR: -194: Not an error -238/578 Test #226: plm-dice-c ............................ Passed 1.26 sec -test 276 - Start 276: plm-multiply-a-stats - -276: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -276: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -276: Test timeout computed to be: 1500 -239/578 Test #194: plm-convert-dicom-c-stats ............. Passed 1.79 sec -test 279 - Start 279: plm-multiply-vf-a-stats - -279: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-multiply-vf-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -279: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -279: Test timeout computed to be: 1500 -247: RETVAL: 0 -247: STDOUT: Creating Histogram... -247: Your Histogram will have 256 bins and will be 0.500000 Gy large -247: checking voxel size... -247: 13.1579 13.1579 13.1579 -247: 13.1579 13.1579 13.1579 -247: Dose and ss-img have the same size. Resample not necessary. -247: -247: STDERR: -247: Not an error -273: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -273: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a.nrrd -273: EXPECTED_ERRNO is -240/578 Test #247: plm-dvh-a ............................. Passed 0.64 sec -test 283 - Start 283: plm-reg-align-center-stats - -283: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-align-center-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -283: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -283: Test timeout computed to be: 1500 +307: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +307: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt +307: EXPECTED_ERRNO is +309: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +309: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt +309: EXPECTED_ERRNO is +257: RETVAL: 0 +257: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 +257: +257: STDERR: +257: Not an error +109: RETVAL: 0 +109: STDOUT: MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 +109: +109: STDERR: +312: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +312: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha +312: EXPECTED_ERRNO is +220: RETVAL: 0 +220: STDOUT: Type = float +220: Planes = 1 +220: Origin = -9.2105 -9.2105 -9.2105 +220: Size = 15 15 15 +220: Spacing = 1.3158 1.3158 1.3158 +220: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +220: +220: STDERR: 260: RETVAL: 0 260: STDOUT: MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872 260: 260: STDERR: 260: Not an error -276: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -276: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a.nrrd -276: EXPECTED_ERRNO is -241/578 Test #260: plm-mask-a-stats ...................... Passed 0.51 sec -test 286 - Start 286: plm-reg-itk-translation-stats +234/578 Test #241: plm-dice-f ............................ Passed 0.35 sec +235/578 Test #257: plm-fill-a-stats ...................... Passed 0.55 sec +236/578 Test #260: plm-mask-a-stats ...................... Passed 0.55 sec +test 329 + Start 329: plm-bsp-mse-o -286: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -286: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -286: Test timeout computed to be: 1500 -245: RETVAL: 0 -245: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha -245: -245: STDERR: -245: Not an error -242/578 Test #245: plm-dmap-b ............................ Passed 0.87 sec -test 289 - Start 289: plm-reg-itk-rigid-a-stats-1 +329: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +329: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +329: Test timeout computed to be: 1500 +test 331 + Start 331: plm-bsp-mse-p -289: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -289: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -289: Test timeout computed to be: 1500 -283: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -283: PARMS is compare;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-img.mha -283: EXPECTED_ERRNO is -279: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -279: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a.nrrd -279: EXPECTED_ERRNO is -263: RETVAL: 0 -263: STDOUT: MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000 -263: -263: STDERR: -263: Not an error +331: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-p" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +331: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +331: Test timeout computed to be: 1500 +test 333 + Start 333: plm-bsp-mse-q + +333: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-q" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +333: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +333: Test timeout computed to be: 1500 +238: Not an error +109: Not an error +220: Not an error +315: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +315: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha +315: EXPECTED_ERRNO is +315: RETVAL: 0 +315: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +315: +315: STDERR: +315: Not an error +321: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +321: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha +321: EXPECTED_ERRNO is +321: RETVAL: 0 +321: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +321: +321: STDERR: +321: Not an error +318: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +318: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha +318: EXPECTED_ERRNO is +324: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +324: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha +324: EXPECTED_ERRNO is 250: RETVAL: 0 250: STDOUT: Trying to load ss_list: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-ss-list.txt 250: Creating Histogram... @@ -15076,32 +15125,6 @@ 250: 250: STDERR: 250: Not an error -286: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -286: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-img.mha -286: EXPECTED_ERRNO is -289: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -289: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-intermediate-img.mha -289: EXPECTED_ERRNO is -243/578 Test #263: plm-gamma-a-stats ..................... Passed 0.53 sec -test 291 - Start 291: plm-reg-itk-rigid-a-stats-2 - -291: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-rigid-a-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -291: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -291: Test timeout computed to be: 1500 -244/578 Test #250: plm-dvh-b ............................. Passed 0.70 sec -test 294 - Start 294: plm-reg-itk-similarity-stats-1 - -294: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -294: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -294: Test timeout computed to be: 1500 -291: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -291: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-img.mha -291: EXPECTED_ERRNO is -294: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -294: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-intermediate-img.mha -294: EXPECTED_ERRNO is 209: RETVAL: 0 209: STDOUT: Trying to load ss_list: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-7-list.txt 209: Setting PIH from M_SS_IMG @@ -15158,133 +15181,24 @@ 209: 209: STDERR: 209: Not an error -245/578 Test #209: plm-convert-prefix-fcsv ............... Passed 1.96 sec -test 296 - Start 296: plm-reg-itk-similarity-stats-2 - -296: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-similarity-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -296: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -296: Test timeout computed to be: 1500 -296: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -296: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-similarity-img.mha -296: EXPECTED_ERRNO is -253: RETVAL: 0 -253: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648233.1717448213.382359RTDOSE -253: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648233.1717448213.382360RTSTRUCT -253: Found DCM_ReferencedFrameOfReferenceSequence! -253: Found DCM_RTReferencedStudySequence! -253: Trying to load rt dose. -253: Load: DoseGridScaling = 0.000000 -253: RTDOSE: dim = 38 38 38 -253: ipp = -243.421005 -243.421005 -243.421005 -253: spc = 13.157900 13.157900 13.157900 -253: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -253: Bits_alloc: 32 -253: Bits_stored: 32 -253: High_bit: 31 -253: Pixel_rep: 0 -253: rc = 1, length = 109744, npix = 54872 -253: Trying to load rt structure set. -253: Adding structure (1), Foreground -253: Structure 1 has color 255\0\0 -253: Rasterizing... -253: Converting... -253: Finished rasterization. -253: Time = 0.054737 seconds -253: Creating Histogram... -253: Your Histogram will have 256 bins and will be 0.500000 Gy large -253: checking voxel size... -253: 0.215872 0.215872 13.1579 -253: 0.215872 0.215872 13.1579 -253: Dose and ss-img have the same size. Resample not necessary. -253: -253: STDERR: -253: Not an error -246/578 Test #253: plm-dvh-c ............................. Passed 0.91 sec -test 299 - Start 299: plm-reg-itk-bspline-stats-1 - -299: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-bspline-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -299: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -299: Test timeout computed to be: 1500 -257: RETVAL: 0 -257: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 -257: -257: STDERR: -257: Not an error +327: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +327: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha +327: EXPECTED_ERRNO is +327: RETVAL: 0 +327: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +327: +327: STDERR: +327: Not an error 266: RETVAL: 0 266: STDOUT: MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000 266: 266: STDERR: 266: Not an error -299: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -299: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-img.mha -299: EXPECTED_ERRNO is -247/578 Test #257: plm-fill-a-stats ...................... Passed 0.91 sec -248/578 Test #266: plm-gamma-b-stats ..................... Passed 0.65 sec -test 303 - Start 303: plm-reg-itk-demons-stats-2 - -303: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -303: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -303: Test timeout computed to be: 1500 -test 305 - Start 305: plm-reg-itk-demons-diff - -305: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-diff" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -305: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -305: Test timeout computed to be: 1500 273: RETVAL: 0 273: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872 273: 273: STDERR: 273: Not an error -249/578 Test #273: plm-maximum-a-stats ................... Passed 0.47 sec -test 307 - Start 307: plm-reg-itk-demons-logd - -307: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-logd" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -307: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -307: Test timeout computed to be: 1500 -276: RETVAL: 0 -276: STDOUT: MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872 -276: -276: STDERR: -276: Not an error -303: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -303: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-img.mha -303: EXPECTED_ERRNO is -305: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -305: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.txt -305: EXPECTED_ERRNO is -250/578 Test #276: plm-multiply-a-stats .................. Passed 0.47 sec -test 309 - Start 309: plm-reg-itk-demons-sym-logd - -309: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-itk-demons-sym-logd" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -309: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -309: Test timeout computed to be: 1500 -291: RETVAL: 0 -291: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 -291: -291: STDERR: -291: Not an error -251/578 Test #291: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.37 sec -test 312 - Start 312: plm-bsp-mse-c-stats - -312: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -312: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -312: Test timeout computed to be: 1500 -309: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -309: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.txt -309: EXPECTED_ERRNO is -307: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -307: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.txt -307: EXPECTED_ERRNO is -312: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -312: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-img.mha -312: EXPECTED_ERRNO is 433: RETVAL: 0 433: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 433: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -15603,39 +15517,17 @@ 433: plm_warp_itk: warping... 433: Saving image... 433: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha -433: Load: 0.0819671 -433: Run: 6.4713 -433: Save: 0.023068 -433: Total: 6.57634 +433: Load: 0.157998 +433: Run: 2.20989 +433: Save: 0.100975 +433: Total: 2.46886 433: Finished! 433: 433: STDERR: 433: Not an error -252/578 Test #433: plm-reg-trans-mi-a .................... Passed 7.48 sec -test 315 - Start 315: plm-bsp-mse-g-stats - -315: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-g-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -315: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -315: Test timeout computed to be: 1500 -294: RETVAL: 0 -294: STDOUT: MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872 -294: -294: STDERR: -294: Not an error -253/578 Test #294: plm-reg-itk-similarity-stats-1 ........ Passed 0.46 sec -test 318 - Start 318: plm-bsp-mse-h-stats - -318: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-h-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -318: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -318: Test timeout computed to be: 1500 -315: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -315: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-img.mha -315: EXPECTED_ERRNO is 268: RETVAL: 0 268: STDOUT: Gamma dose max is 70.000000 -268: Time = 0.022401 seconds +268: Time = 0.003624 seconds 268: Gamma calculation is under progress... 268: analysis threshold = 7.00 Gy 268: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.mha @@ -15643,24 +15535,213 @@ 268: 268: STDERR: 268: Not an error -254/578 Test #268: plm-gamma-c ........................... Passed 0.81 sec -test 321 - Start 321: plm-bsp-mse-i-stats - -321: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-i-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -321: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -321: Test timeout computed to be: 1500 -318: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -318: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-img.mha -318: EXPECTED_ERRNO is -321: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -321: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-img.mha -321: EXPECTED_ERRNO is +253: RETVAL: 0 +253: STDOUT: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205339.1751858934.315445RTDOSE +253: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205339.1751858934.315446RTSTRUCT +253: Found DCM_ReferencedFrameOfReferenceSequence! +253: Found DCM_RTReferencedStudySequence! +253: Trying to load rt dose. +253: Load: DoseGridScaling = 0.000000 +253: RTDOSE: dim = 38 38 38 +253: ipp = -243.421005 -243.421005 -243.421005 +253: spc = 13.157900 13.157900 13.157900 +253: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +253: Bits_alloc: 32 +253: Bits_stored: 32 +253: High_bit: 31 +253: Pixel_rep: 0 +253: rc = 1, length = 109744, npix = 54872 +253: Trying to load rt structure set. +253: Adding structure (1), Foreground +253: Structure 1 has color 255\0\0 +253: Rasterizing... +253: Converting... +253: Finished rasterization. +253: Time = 0.020540 seconds +253: Creating Histogram... +253: Your Histogram will have 256 bins and will be 0.500000 Gy large +253: checking voxel size... +253: 0.215872 0.215872 13.1579 +253: 0.215872 0.215872 13.1579 +253: Dose and ss-img have the same size. Resample not necessary. +253: +253: STDERR: +253: Not an error +276: RETVAL: 0 +276: STDOUT: MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872 +276: +276: STDERR: +276: Not an error +283: RETVAL: 0 +283: STDOUT: MIN -0.000061 AVE 0.000001 MAX 0.000061 +283: MAE 0.000002 MSE 0.000000 +283: DIF 2274 NUM 54872 +283: +283: STDERR: +283: Not an error +207: Not an error 289: RETVAL: 0 289: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 289: 289: STDERR: 289: Not an error +291: RETVAL: 0 +291: STDOUT: MIN -1000.000000 AVE -939.203979 MAX 0.000000 NONZERO 51690 NUMVOX 54872 +291: +291: STDERR: +291: Not an error +237/578 Test #109: fdk-cpu-a-stats ....................... Passed 0.65 sec +238/578 Test #207: plm-convert-cxt-stats ................. Passed 0.64 sec +239/578 Test #209: plm-convert-prefix-fcsv ............... Passed 0.64 sec +240/578 Test #220: plm-crop-c-stats ...................... Passed 0.63 sec +241/578 Test #238: plm-dice-e ............................ Passed 0.61 sec +242/578 Test #250: plm-dvh-b ............................. Passed 0.59 sec +243/578 Test #253: plm-dvh-c ............................. Passed 0.59 sec +244/578 Test #266: plm-gamma-b-stats ..................... Passed 0.57 sec +245/578 Test #268: plm-gamma-c ........................... Passed 0.56 sec +246/578 Test #273: plm-maximum-a-stats ................... Passed 0.48 sec +247/578 Test #276: plm-multiply-a-stats .................. Passed 0.44 sec +248/578 Test #283: plm-reg-align-center-stats ............ Passed 0.41 sec +249/578 Test #289: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.38 sec +250/578 Test #315: plm-bsp-mse-g-stats ................... Passed 0.27 sec +251/578 Test #327: plm-bsp-mse-l-stats ................... Passed 0.26 sec +test 335 + Start 335: plm-bsp-mse-r + +335: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-r" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +335: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +335: Test timeout computed to be: 1500 +test 338 + Start 338: plm-bsp-mi-c-stats + +338: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +338: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +338: Test timeout computed to be: 1500 +test 341 + Start 341: plm-bsp-mi-c-2-stats + +341: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-2-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +341: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +341: Test timeout computed to be: 1500 +test 344 + Start 344: plm-bsp-mi-k-stats + +344: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +344: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +344: Test timeout computed to be: 1500 +test 347 + Start 347: plm-bsp-gm-k-stats + +347: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +347: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +347: Test timeout computed to be: 1500 +test 349 + Start 349: plm-bsp-sm-multi-a + +349: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-sm-multi-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +349: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +349: Test timeout computed to be: 1500 +test 352 + Start 352: plm-bsp-openmp-stats + +352: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +352: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +352: Test timeout computed to be: 1500 +test 354 + Start 354: plm-bsp-resume + +354: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +354: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +354: Test timeout computed to be: 1500 +test 356 + Start 356: plm-bsp-logfile + +356: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-logfile" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +356: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +356: Test timeout computed to be: 1500 +test 359 + Start 359: plm-bsp-ushort-stats + +359: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +359: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +359: Test timeout computed to be: 1500 +test 362 + Start 362: plm-bsp-double-stats + +362: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +362: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +362: Test timeout computed to be: 1500 +test 366 + Start 366: plm-bsp-char-output-stats + +366: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +366: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +366: Test timeout computed to be: 1500 +test 368 + Start 368: plm-bsp-rect + +368: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-rect" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +368: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +368: Test timeout computed to be: 1500 +test 370 + Start 370: plm-bsp-regularize-none-stats + +370: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +370: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +370: Test timeout computed to be: 1500 +test 373 + Start 373: plm-bsp-regularize-analytic-stats + +373: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +373: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +373: Test timeout computed to be: 1500 +252/578 Test #321: plm-bsp-mse-i-stats ................... Passed 0.30 sec +318: RETVAL: 0 +318: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +318: +318: STDERR: +318: Not an error +253/578 Test #318: plm-bsp-mse-h-stats ................... Passed 0.31 sec +324: RETVAL: 0 +324: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +324: +324: STDERR: +324: Not an error +254/578 Test #324: plm-bsp-mse-k-stats ................... Passed 0.30 sec +255/578 Test #433: plm-reg-trans-mi-a .................... Passed 2.91 sec +256/578 Test #291: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.41 sec +299: RETVAL: 0 +299: STDOUT: MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872 +299: +299: STDERR: +299: Not an error +257/578 Test #299: plm-reg-itk-bspline-stats-1 ........... Passed 0.40 sec +270: RETVAL: 0 +270: STDOUT: Gamma dose max is 70.000000 +270: Time = 0.000736 seconds +270: Gamma calculation is under progress... +270: analysis threshold = 7.00 Gy +270: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha +270: Pass rate = 89.999998 % +270: +270: STDERR: +270: Not an error +258/578 Test #270: plm-gamma-d ........................... Passed 0.54 sec +312: RETVAL: 0 +312: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +312: +312: STDERR: +312: Not an error +259/578 Test #312: plm-bsp-mse-c-stats ................... Passed 0.36 sec +329: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +329: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt +329: EXPECTED_ERRNO is +296: RETVAL: 0 +296: STDOUT: MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872 +296: +296: STDERR: +296: Not an error +260/578 Test #296: plm-reg-itk-similarity-stats-2 ........ Passed 0.40 sec 279: RETVAL: 0 279: STDOUT: Min: 100.000 100.000 100.000 279: Mean: 100.000 100.000 100.000 @@ -15675,214 +15756,686 @@ 279: Max second derivative at: (1 1 1) 279: 279: STDERR: +279: Not an error +261/578 Test #279: plm-multiply-vf-a-stats ............... Passed 0.48 sec +294: RETVAL: 0 +294: STDOUT: MIN -1000.000000 AVE -981.187012 MAX 0.000000 NONZERO 54152 NUMVOX 54872 +294: +294: STDERR: +294: Not an error +262/578 Test #294: plm-reg-itk-similarity-stats-1 ........ Passed 0.41 sec 286: RETVAL: 0 286: STDOUT: MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872 286: 286: STDERR: 286: Not an error -255/578 Test #289: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.63 sec -test 324 - Start 324: plm-bsp-mse-k-stats +263/578 Test #286: plm-reg-itk-translation-stats ......... Passed 0.43 sec +331: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +331: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt +331: EXPECTED_ERRNO is +333: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +333: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt +333: EXPECTED_ERRNO is +303: RETVAL: 0 +303: STDOUT: MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872 +303: +303: STDERR: +303: Not an error +264/578 Test #303: plm-reg-itk-demons-stats-2 ............ Passed 0.38 sec +375: RETVAL: 0 +375: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +375: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha +375: Launching registration worker thread +375: Inside registration worker thread +375: Doing registration stage +375: [1] xf_in->m_type = 0, xf_out->m_type = 0 +375: RESAMPLE 1 1: (1 1 1), (1 1 1) +375: RESAMPLE 1 1: (1 1 1), (1 1 1) +375: volume_calc_grad complete. +375: bspline_xform_initialize +375: Warning: vox_per_rgn was less than 4. +375: Warning: vox_per_rgn was less than 4. +375: Warning: vox_per_rgn was less than 4. +375: rdims = (10,10,10) +375: vox_per_rgn = (4,4,4) +375: cdims = (13 13 13) +375: Algorithm flavor = g +375: Threading = 0 +375: Regularization: flavor = a lambda = 1.000000 +375: >> Checking JH allocation +375: BSPLINE PARMS +375: max_its = 5 +375: max_feval = 5 +375: BSPLINE XFORM HEADER +375: vox_per_rgn = 4 4 4 +375: roi_offset = 0 0 0 +375: roi_dim = 38 38 38 +375: img_dc = 1 0 0 0 1 0 0 0 1 +375: BST METRICS +375: MET 110100 MSE 1.000000 +375: Setting nmax, mmax = 6591 83 +375: >>> START +375: This problem is unconstrained. +375: [ 0, 0] SCORE 5540.166 NV 54872 GM 0.000 GN 28.2 [ 0.734 s ] +375: MSE 5540.166 RM 0.000 [ 0.045 | 0.689 ] +375: CMIN 0.00 CAVG 0.00 CMAX 0.00 +375: LSD 0.00 +375: [ 0, 1] SCORE 5484.185 NV 54872 GM 0.045 GN 27.7 [ 0.400 s ] +375: MSE 5484.124 RM 0.061 [ 0.048 | 0.352 ] +375: CMIN -0.16 CAVG -0.00 CMAX 0.22 +375: LSD 1.00 +375: [ 0, 2] SCORE 5267.761 NV 54872 GM 0.224 GN 25.8 [ 0.297 s ] +375: MSE 5266.236 RM 1.525 [ 0.013 | 0.284 ] +375: CMIN -0.81 CAVG 0.00 CMAX 1.12 +375: LSD 5.00 +375: [ 0, 3] SCORE 4511.430 NV 54872 GM 0.928 GN 18.4 [ 0.353 s ] +375: MSE 4484.536 RM 26.894 [ 0.018 | 0.335 ] +375: CMIN -3.39 CAVG 0.00 CMAX 4.70 +375: LSD 21.00 +375: [ 1, 4] SCORE 3229.400 NV 54872 GM 1.898 GN 2.39 [ 0.229 s ] +375: MSE 3018.981 RM 210.419 [ 0.012 | 0.217 ] +375: CMIN -9.73 CAVG -0.00 CMAX 13.18 +375: LSD 40.25 +375: [ 2, 5] SCORE 3185.099 NV 54872 GM 4.098 GN 2.08 [ 0.372 s ] +375: MSE 2976.101 RM 208.998 [ 0.023 | 0.349 ] +375: CMIN -9.60 CAVG -0.00 CMAX 13.44 +375: LSD 5.50 +375: [2] xf_out->m_type = 9, xf_in->m_type = 0 +375: ** Registration worker thread finished. +375: Writing transformation ... +375: Warping... +375: Running: plm_warp_native +375: Converting input image... +375: Converting xform... +375: bspline_xform_initialize +375: rdims = (10,10,10) +375: vox_per_rgn = (4,4,4) +375: cdims = (13 13 13) +375: Creating output vf... +375: Creating output volume... +375: Running native warper... +375: bspline_warp complete. +375: Back convert to original type... +375: > Convert vf to itk +375: > Conversion complete. +375: plm_warp_native is complete. +375: Saving image... +375: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-img.mha +375: Saving vf... +375: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha +375: Load: 0.0901699 +375: Run: 2.47056 +375: Save: 0.144818 +375: Total: 2.70555 +375: Finished! +375: +375: STDERR: +375: Not an error +265/578 Test #375: plm-bsp-regularize-numeric ............ Passed 3.16 sec +194: RETVAL: 0 +194: STDOUT: MIN 0.000000 AVE 0.000280 MAX 1.000000 NONZERO 280 NUMVOX 1000000 +194: +194: STDERR: +194: Not an error +335: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +335: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt +335: EXPECTED_ERRNO is +338: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +338: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha +338: EXPECTED_ERRNO is +341: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +341: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha +341: EXPECTED_ERRNO is +344: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +344: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha +344: EXPECTED_ERRNO is +347: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +347: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha +347: EXPECTED_ERRNO is +349: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +349: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt +349: EXPECTED_ERRNO is +352: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +352: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha +352: EXPECTED_ERRNO is +354: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +354: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt +354: EXPECTED_ERRNO is +266/578 Test #194: plm-convert-dicom-c-stats ............. Passed 0.44 sec +test 376 + Start 376: plm-bsp-regularize-numeric-stats -324: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-k-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -324: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -324: Test timeout computed to be: 1500 -279: Not an error -270: RETVAL: 0 -270: STDOUT: Gamma dose max is 70.000000 -270: Time = 0.011331 seconds -270: Gamma calculation is under progress... -270: analysis threshold = 7.00 Gy -270: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.mha -270: Pass rate = 89.999998 % -270: -270: STDERR: -256/578 Test #279: plm-multiply-vf-a-stats ............... Passed 0.70 sec -257/578 Test #286: plm-reg-itk-translation-stats ......... Passed 0.65 sec -test 327 - Start 327: plm-bsp-mse-l-stats +376: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +376: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +376: Test timeout computed to be: 1500 +test 380 + Start 380: plm-bsp-landmark-b-stats -327: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-l-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -327: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -327: Test timeout computed to be: 1500 -test 329 - Start 329: plm-bsp-mse-o +380: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +380: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +380: Test timeout computed to be: 1500 +test 383 + Start 383: plm-bsp-landmark-c-stats -329: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -329: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -329: Test timeout computed to be: 1500 -270: Not an error -258/578 Test #270: plm-gamma-d ........................... Passed 0.92 sec -test 331 - Start 331: plm-bsp-mse-p +383: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +383: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +383: Test timeout computed to be: 1500 +test 386 + Start 386: plm-bsp-landmark-d-stats -331: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-p" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -331: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -331: Test timeout computed to be: 1500 -324: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -324: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-img.mha -324: EXPECTED_ERRNO is -327: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -327: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-l-img.mha -327: EXPECTED_ERRNO is -331: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -331: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p.txt -331: EXPECTED_ERRNO is -329: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -329: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o.txt -329: EXPECTED_ERRNO is -299: RETVAL: 0 -299: STDOUT: MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872 -299: -299: STDERR: -299: Not an error -283: RETVAL: 0 -283: STDOUT: MIN -0.000061 AVE 0.000001 MAX 0.000061 -283: MAE 0.000002 MSE 0.000000 -283: DIF 2274 NUM 54872 -283: -283: STDERR: -283: Not an error -259/578 Test #283: plm-reg-align-center-stats ............ Passed 0.78 sec -260/578 Test #299: plm-reg-itk-bspline-stats-1 ........... Passed 0.46 sec -test 333 - Start 333: plm-bsp-mse-q +386: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +386: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +386: Test timeout computed to be: 1500 +test 389 + Start 389: plm-bsp-landmark-e-stats + +389: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +389: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +389: Test timeout computed to be: 1500 +test 392 + Start 392: plm-bsp-dcos-a-stats + +392: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +392: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +392: Test timeout computed to be: 1500 +test 395 + Start 395: plm-bsp-dcos-b-stats + +395: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +395: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +395: Test timeout computed to be: 1500 +test 398 + Start 398: plm-bsp-dcos-c-stats + +398: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +398: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +398: Test timeout computed to be: 1500 +test 401 + Start 401: plm-bsp-dcos-d-stats + +401: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +401: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +401: Test timeout computed to be: 1500 +test 404 + Start 404: plm-bsp-dcos-e-stats + +404: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +404: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +404: Test timeout computed to be: 1500 +test 407 + Start 407: plm-bsp-dcos-f-stats + +407: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +407: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +407: Test timeout computed to be: 1500 +test 410 + Start 410: plm-reg-multi-a-stats + +410: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +410: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +410: Test timeout computed to be: 1500 +test 413 + Start 413: plm-reg-multi-b-stats + +413: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +413: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +413: Test timeout computed to be: 1500 +test 416 + Start 416: plm-reg-dv-itk-translation-stats + +416: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +416: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +416: Test timeout computed to be: 1500 +test 425 + Start 425: plm-reg-process-a-stats + +425: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +425: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +425: Test timeout computed to be: 1500 +359: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +359: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha +359: EXPECTED_ERRNO is +356: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +356: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt +356: EXPECTED_ERRNO is +362: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +362: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha +362: EXPECTED_ERRNO is +366: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +366: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha +366: EXPECTED_ERRNO is +368: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +368: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt +368: EXPECTED_ERRNO is +370: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +370: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha +370: EXPECTED_ERRNO is +373: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +373: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha +373: EXPECTED_ERRNO is +376: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +376: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha +376: EXPECTED_ERRNO is +380: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +380: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha +380: EXPECTED_ERRNO is +383: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +383: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha +383: EXPECTED_ERRNO is +386: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +386: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha +386: EXPECTED_ERRNO is +389: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +389: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha +389: EXPECTED_ERRNO is +392: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +392: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd +392: EXPECTED_ERRNO is +395: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +395: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd +395: EXPECTED_ERRNO is +398: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +398: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd +398: EXPECTED_ERRNO is +401: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +401: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd +401: EXPECTED_ERRNO is +404: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +404: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd +404: EXPECTED_ERRNO is +407: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +407: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd +407: EXPECTED_ERRNO is +410: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +410: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd +410: EXPECTED_ERRNO is +416: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +416: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd +416: EXPECTED_ERRNO is +413: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +413: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd +413: EXPECTED_ERRNO is +305: RETVAL: 0 +305: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +305: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +305: Launching registration worker thread +305: Inside registration worker thread +305: Doing registration stage +305: [1] xf_in->m_type = 0, xf_out->m_type = 0 +305: Ready to start registration. +305: MSE [ 0] 18945.891 [ 0.024 secs] +305: MSE [ 1] 9795.787 [ 0.031 secs] +305: MSE [ 2] 3911.273 [ 0.021 secs] +305: MSE [ 3] 1186.045 [ 0.027 secs] +305: MSE [ 4] 314.763 [ 0.034 secs] +305: Done with registration. Writing output... +305: Deformation stats (out) +305: VF_MAX = 102.433 VF_AVG = 31.2783 +305: [2] xf_out->m_type = 8, xf_in->m_type = 0 +305: ** Registration worker thread finished. +305: Warping... +305: plm_warp_itk: xform_to_itk_vf +305: plm_warp_itk: convert_to_itk +305: plm_warp_itk: warping... +305: Saving image... +305: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-img.mha +305: Saving vf... +305: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-vf.mha +305: Load: 0.0382791 +305: Run: 0.141806 +305: Save: 0.0124969 +305: Total: 0.192582 +305: Finished! +305: +305: STDERR: +305: Not an error +425: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +425: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha +425: EXPECTED_ERRNO is +267/578 Test #305: plm-reg-itk-demons-diff ............... Passed 0.47 sec +test 428 + Start 428: plm-reg-trans-a-stats + +428: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +428: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +428: Test timeout computed to be: 1500 +428: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +428: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha +428: EXPECTED_ERRNO is +341: RETVAL: 0 +341: STDOUT: MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872 +341: +341: STDERR: +341: Not an error +307: RETVAL: 0 +268/578 Test #341: plm-bsp-mi-c-2-stats .................. Passed 0.24 sec +test 431 + Start 431: plm-reg-trans-b-stats + +431: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +431: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +431: Test timeout computed to be: 1500 +307: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +307: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +307: Launching registration worker thread +307: Inside registration worker thread +307: Doing registration stage +307: [1] xf_in->m_type = 0, xf_out->m_type = 0 +307: Ready to start registration. +307: MSE [ 0] 18945.891 [ 0.029 secs] +307: MSE [ 1] 9788.487 [ 0.020 secs] +307: MSE [ 2] 4038.212 [ 0.031 secs] +307: MSE [ 3] 1283.245 [ 0.055 secs] +307: MSE [ 4] 392.878 [ 0.101 secs] +307: Done with registration. Writing output... +307: Deformation stats (out) +307: VF_MAX = 112.668 VF_AVG = 32.7138 +307: [2] xf_out->m_type = 8, xf_in->m_type = 0 +307: ** Registration worker thread finished. +307: Warping... +307: plm_warp_itk: xform_to_itk_vf +307: plm_warp_itk: convert_to_itk +307: plm_warp_itk: warping... +307: Saving image... +307: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-img.mha +307: Saving vf... +307: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-vf.mha +307: Load: 0.0596759 +307: Run: 0.244478 +307: Save: 0.0182781 +307: Total: 0.322432 +307: Finished! +307: +307: STDERR: +307: Not an error +338: RETVAL: 0 +338: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 +338: +338: STDERR: +338: Not an error +269/578 Test #338: plm-bsp-mi-c-stats .................... Passed 0.27 sec +test 434 + Start 434: plm-reg-trans-mi-a-stats + +434: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +434: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +434: Test timeout computed to be: 1500 +344: RETVAL: 0 +344: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 +344: +344: STDERR: +344: Not an error +366: RETVAL: 0 +366: STDOUT: MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872 +366: +366: STDERR: +366: Not an error +431: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +431: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha +431: EXPECTED_ERRNO is +270/578 Test #307: plm-reg-itk-demons-logd ............... Passed 0.61 sec +test 437 + Start 437: plm-reg-autores-a-stats + +437: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +437: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +437: Test timeout computed to be: 1500 +271/578 Test #344: plm-bsp-mi-k-stats .................... Passed 0.28 sec +test 440 + Start 440: plm-reg-autores-b-stats + +440: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +440: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +440: Test timeout computed to be: 1500 +272/578 Test #366: plm-bsp-char-output-stats ............. Passed 0.26 sec +test 446 + Start 446: plm-compose-a-stats + +446: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +446: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +446: Test timeout computed to be: 1500 +434: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +434: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha +434: EXPECTED_ERRNO is +347: RETVAL: 0 +347: STDOUT: MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872 +347: +347: STDERR: +347: Not an error +273/578 Test #347: plm-bsp-gm-k-stats .................... Passed 0.30 sec +test 450 + Start 450: plm-compose-b-stats -333: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-q" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -333: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -333: Test timeout computed to be: 1500 -test 335 - Start 335: plm-bsp-mse-r +450: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +450: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +450: Test timeout computed to be: 1500 +446: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +446: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha +446: EXPECTED_ERRNO is +440: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +440: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha +440: EXPECTED_ERRNO is +352: RETVAL: 0 +352: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +352: +352: STDERR: +362: RETVAL: 0 +362: STDOUT: MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872 +362: +362: STDERR: +359: RETVAL: 0 +359: STDOUT: MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872 +359: +359: STDERR: +437: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +437: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha +437: EXPECTED_ERRNO is +392: RETVAL: 0 +392: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 +392: +392: STDERR: +386: RETVAL: 0 +386: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 +386: +386: STDERR: +370: RETVAL: 0 +370: STDOUT: Min: -9.485 -9.485 -9.485 +370: Mean: -0.004 -0.004 -0.004 +370: Max: 9.819 9.819 9.819 +370: Mean abs: 0.215 0.215 0.215 +370: Ave len: 0.425 +370: Jacobian: MINJAC 0.315393 MAXJAC 1.06557 +370: Energy: MINDIL -0.958 MAXDIL 0.0701264 +370: MAXSTRAIN 0.0879 TOTSTRAIN 112.949 +370: Second derivatives: MINSECDER 0 MAXSECDER 0.0362 +370: AVESECDER 0.000354 INTSECDER 4.42e+04 +370: Max second derivative at: (20 20 16) +370: +370: STDERR: +395: RETVAL: 0 +395: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 +395: +395: STDERR: +373: RETVAL: 0 +373: STDOUT: Min: -7.802 -7.802 -7.802 +373: Mean: -0.007 -0.007 -0.007 +373: Max: 7.755 7.755 7.755 +373: Mean abs: 0.234 0.234 0.234 +373: Ave len: 0.474 +373: Jacobian: MINJAC 0.419027 MAXJAC 1.04996 +373: Energy: MINDIL -0.755 MAXDIL 0.0517541 +373: MAXSTRAIN 0.0532 TOTSTRAIN 83.3434 +373: Second derivatives: MINSECDER 2.4e-12 MAXSECDER 0.0192 +373: AVESECDER 0.000198 INTSECDER 2.47e+04 +373: Max second derivative at: (20 16 20) +373: +373: STDERR: +383: RETVAL: 0 +383: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 +383: +383: STDERR: +380: RETVAL: 0 +380: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 +380: +380: STDERR: +425: RETVAL: 0 +425: STDOUT: MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872 +425: +425: STDERR: +376: RETVAL: 0 +376: STDOUT: Min: -7.243 -7.243 -7.243 +376: Mean: -0.004 -0.004 -0.004 +376: Max: 7.465 7.465 7.465 +376: Mean abs: 0.231 0.231 0.231 +376: Ave len: 0.460 +376: Jacobian: MINJAC 0.443734 MAXJAC 1.03502 +376: Energy: MINDIL -0.712 MAXDIL 0.0370853 +376: MAXSTRAIN 0.0397 TOTSTRAIN 73.6175 +376: Second derivatives: MINSECDER 9.85e-12 MAXSECDER 0.0182 +376: AVESECDER 0.00018 INTSECDER 2.24e+04 +376: Max second derivative at: (20 20 16) +376: +376: STDERR: +389: RETVAL: 0 +389: STDOUT: MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872 +389: +389: STDERR: +373: Not an error +362: Not an error +386: Not an error +359: Not an error +274/578 Test #359: plm-bsp-ushort-stats .................. Passed 0.40 sec +275/578 Test #373: plm-bsp-regularize-analytic-stats ..... Passed 0.39 sec +test 454 + Start 454: plm-compose-c-stats -335: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-r" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -335: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -335: Test timeout computed to be: 1500 -333: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -333: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q.txt -333: EXPECTED_ERRNO is -303: RETVAL: 0 -303: STDOUT: MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872 -303: -303: STDERR: -303: Not an error -335: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -335: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r.txt -335: EXPECTED_ERRNO is -261/578 Test #303: plm-reg-itk-demons-stats-2 ............ Passed 0.46 sec -test 338 - Start 338: plm-bsp-mi-c-stats +454: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +454: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +454: Test timeout computed to be: 1500 +test 457 + Start 457: plm-resample-a-stats -338: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -338: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -338: Test timeout computed to be: 1500 -312: RETVAL: 0 -312: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -312: -312: STDERR: -312: Not an error -262/578 Test #312: plm-bsp-mse-c-stats ................... Passed 0.42 sec -test 341 - Start 341: plm-bsp-mi-c-2-stats +457: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +457: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +457: Test timeout computed to be: 1500 +376: Not an error +450: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +450: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha +450: EXPECTED_ERRNO is +389: Not an error +425: Not an error +352: Not an error +370: Not an error +395: Not an error +380: Not an error +392: Not an error +383: Not an error +276/578 Test #352: plm-bsp-openmp-stats .................. Passed 0.43 sec +277/578 Test #362: plm-bsp-double-stats .................. Passed 0.42 sec +278/578 Test #376: plm-bsp-regularize-numeric-stats ...... Passed 0.40 sec +279/578 Test #380: plm-bsp-landmark-b-stats .............. Passed 0.39 sec +280/578 Test #386: plm-bsp-landmark-d-stats .............. Passed 0.39 sec +281/578 Test #389: plm-bsp-landmark-e-stats .............. Passed 0.39 sec +282/578 Test #395: plm-bsp-dcos-b-stats .................. Passed 0.45 sec +283/578 Test #425: plm-reg-process-a-stats ............... Passed 0.41 sec +test 460 + Start 460: plm-resample-b-stats -341: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-c-2-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -341: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -341: Test timeout computed to be: 1500 -338: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -338: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-img.mha -338: EXPECTED_ERRNO is -341: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -341: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-c-2-img.mha -341: EXPECTED_ERRNO is -296: RETVAL: 0 -296: STDOUT: MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872 -296: -296: STDERR: -315: RETVAL: 0 -315: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -315: -315: STDERR: -321: RETVAL: 0 -321: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -321: -321: STDERR: -327: RETVAL: 0 -327: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -327: -327: STDERR: -327: Not an error -315: Not an error -296: Not an error -263/578 Test #327: plm-bsp-mse-l-stats ................... Passed 0.47 sec -test 344 - Start 344: plm-bsp-mi-k-stats +460: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +460: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +460: Test timeout computed to be: 1500 +test 463 + Start 463: plm-resample-c-stats -344: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mi-k-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -344: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -344: Test timeout computed to be: 1500 -321: Not an error -324: RETVAL: 0 -324: STDOUT: MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -324: -324: STDERR: -324: Not an error -264/578 Test #296: plm-reg-itk-similarity-stats-2 ........ Passed 0.94 sec -265/578 Test #315: plm-bsp-mse-g-stats ................... Passed 0.67 sec -266/578 Test #321: plm-bsp-mse-i-stats ................... Passed 0.59 sec -test 347 - Start 347: plm-bsp-gm-k-stats +463: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +463: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +463: Test timeout computed to be: 1500 +test 466 + Start 466: plm-scale-a-stats -347: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-gm-k-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -347: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -347: Test timeout computed to be: 1500 -test 349 - Start 349: plm-bsp-sm-multi-a +466: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +466: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +466: Test timeout computed to be: 1500 +test 469 + Start 469: plm-scale-vf-a-stats -349: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-sm-multi-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -349: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -349: Test timeout computed to be: 1500 -test 352 - Start 352: plm-bsp-openmp-stats +469: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +469: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +469: Test timeout computed to be: 1500 +test 471 + Start 471: plm-sift-a -352: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-openmp-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -352: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -352: Test timeout computed to be: 1500 -267/578 Test #324: plm-bsp-mse-k-stats ................... Passed 0.56 sec -344: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -344: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mi-k-img.mha -344: EXPECTED_ERRNO is -test 354 - Start 354: plm-bsp-resume +471: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-sift-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=sift;--output-ps-1;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +471: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +471: Test timeout computed to be: 1500 +test 475 + Start 475: plm-thumbnail-a-stats -354: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -354: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -354: Test timeout computed to be: 1500 -318: RETVAL: 0 -318: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -318: -318: STDERR: -318: Not an error -349: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -349: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a.txt -349: EXPECTED_ERRNO is -268/578 Test #318: plm-bsp-mse-h-stats ................... Passed 0.71 sec -test 356 - Start 356: plm-bsp-logfile +475: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +475: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +475: Test timeout computed to be: 1500 +test 478 + Start 478: plm-thumbnail-b-stats -356: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-logfile" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -356: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -356: Test timeout computed to be: 1500 -354: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -354: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume.txt -354: EXPECTED_ERRNO is -347: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -347: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-img.mha -347: EXPECTED_ERRNO is -352: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -352: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-img.mha -352: EXPECTED_ERRNO is -356: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -356: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile.txt -356: EXPECTED_ERRNO is +478: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +478: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +478: Test timeout computed to be: 1500 +test 481 + Start 481: plm-thumbnail-c-stats + +481: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +481: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +481: Test timeout computed to be: 1500 +284/578 Test #370: plm-bsp-regularize-none-stats ......... Passed 0.52 sec +285/578 Test #392: plm-bsp-dcos-a-stats .................. Passed 0.49 sec +286/578 Test #383: plm-bsp-landmark-c-stats .............. Passed 0.50 sec +407: RETVAL: 0 +407: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 +407: +407: STDERR: +407: Not an error +287/578 Test #407: plm-bsp-dcos-f-stats .................. Passed 0.47 sec +454: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +454: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha +454: EXPECTED_ERRNO is +416: RETVAL: 0 +416: STDOUT: MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872 +416: +416: STDERR: +416: Not an error +410: RETVAL: 0 +410: STDOUT: Min: -20.189 -0.190 -0.190 +410: Mean: -20.000 -0.000 -0.000 +410: Max: -19.810 0.190 0.190 +410: Mean abs: 20.000 0.000 0.000 +410: Ave len: 20.000 +410: Jacobian: MINJAC 0.978516 MAXJAC 1.02157 +410: Energy: MINDIL -0.0216 MAXDIL 0.0215666 +410: MAXSTRAIN 0.0221 TOTSTRAIN 0.0501571 +410: Second derivatives: MINSECDER 0 MAXSECDER 0.00749 +410: AVESECDER 1.12e-05 INTSECDER 1.4e+03 +410: Max second derivative at: (18 20 16) +410: +410: STDERR: +410: Not an error +457: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +457: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha +457: EXPECTED_ERRNO is +404: RETVAL: 0 +404: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 +404: +404: STDERR: +404: Not an error +401: RETVAL: 0 +401: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 +401: +401: STDERR: +401: Not an error +398: RETVAL: 0 +398: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 +398: +398: STDERR: +398: Not an error 559: RETVAL: 0 559: STDOUT: 559: [PLAN] @@ -15982,41 +16535,21 @@ 559: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 559: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha 559: Sigma: 0.000000 seconds -559: Calc: 4.693527 seconds -559: IO: 0.237421 seconds +559: Calc: 1.697204 seconds +559: IO: 0.232073 seconds 559: Reformat: 0.000000 seconds -559: Misc: 0.042893 seconds +559: Misc: 0.025067 seconds 559: done. 559: -559: Total execution time : 5.078125 seconds. +559: Total execution time : 2.004257 seconds. 559: 559: STDERR: 559: Not an error -269/578 Test #559: proton-dose-4a ........................ Passed 5.72 sec -test 359 - Start 359: plm-bsp-ushort-stats - -359: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-ushort-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -359: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -359: Test timeout computed to be: 1500 -359: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -359: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-img.mha -359: EXPECTED_ERRNO is -338: RETVAL: 0 -338: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 -338: -338: STDERR: -338: Not an error -270/578 Test #338: plm-bsp-mi-c-stats .................... Passed 0.68 sec -test 362 - Start 362: plm-bsp-double-stats - -362: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-double-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -362: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -362: Test timeout computed to be: 1500 -362: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -362: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-img.mha -362: EXPECTED_ERRNO is +428: RETVAL: 0 +428: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 +428: +428: STDERR: +428: Not an error 329: RETVAL: 0 329: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 329: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -16050,16 +16583,16 @@ 329: [ 0, 0] MSE 18756.248 NV 6859 GM -2992.626 GN 812 [ 0.004 s ] 329: CMIN 0.00 CAVG 0.00 CMAX 0.00 329: LSD 0.00 -329: [ 0, 1] MSE 17839.281 NV 6859 GM -3669.916 GN 971 [ 0.004 s ] +329: [ 0, 1] MSE 17839.281 NV 6859 GM -3669.916 GN 971 [ 0.008 s ] 329: CMIN -0.06 CAVG 0.01 CMAX 0.67 329: LSD 1.00 -329: [ 0, 2] MSE 14291.201 NV 6844 GM -3069.703 GN 827 [ 0.004 s ] +329: [ 0, 2] MSE 14291.201 NV 6844 GM -3069.703 GN 827 [ 0.012 s ] 329: CMIN -0.32 CAVG 0.05 CMAX 3.36 329: LSD 5.00 329: [ 0, 3] MSE 3942.469 NV 6280 GM -1514.267 GN 474 [ 0.004 s ] 329: CMIN -1.35 CAVG 0.21 CMAX 14.12 329: LSD 21.00 -329: [ 1, 4] MSE 6518.217 NV 5156 GM 1242.011 GN 628 [ 0.004 s ] +329: [ 1, 4] MSE 6518.217 NV 5156 GM 1242.011 GN 628 [ 0.006 s ] 329: CMIN -2.29 CAVG 0.47 CMAX 37.57 329: LSD 35.84 329: [ 1, 5] MSE 347.073 NV 5829 GM -219.984 GN 76.6 [ 0.004 s ] @@ -16093,13 +16626,14 @@ 329: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha 329: Saving vf... 329: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-vf.mha -329: Load: 0.186785 -329: Run: 0.0511191 -329: Save: 0.101308 -329: Total: 0.339212 +329: Load: 0.044265 +329: Run: 0.052238 +329: Save: 0.172886 +329: Total: 0.269389 329: Finished! 329: 329: STDERR: +329: Not an error 333: RETVAL: 0 333: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 333: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -16130,22 +16664,22 @@ 333: Setting nmax, mmax = 375 21 333: >>> START 333: This problem is unconstrained. -333: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.012 s ] +333: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.010 s ] 333: CMIN 0.00 CAVG 0.00 CMAX 0.00 333: LSD 0.00 -333: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.004 s ] +333: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.009 s ] 333: CMIN -0.05 CAVG 0.01 CMAX 0.68 333: LSD 1.00 -333: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.028 s ] +333: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.004 s ] 333: CMIN -0.27 CAVG 0.05 CMAX 3.40 333: LSD 5.00 -333: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.009 s ] +333: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.004 s ] 333: CMIN -2.31 CAVG 0.43 CMAX 26.12 333: LSD 35.51 -333: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.013 s ] +333: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.014 s ] 333: CMIN -2.36 CAVG 0.35 CMAX 22.13 333: LSD 6.00 -333: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.021 s ] +333: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.007 s ] 333: CMIN -2.20 CAVG 0.36 CMAX 21.85 333: LSD 1.43 333: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -16176,41 +16710,308 @@ 333: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha 333: Saving vf... 333: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-vf.mha -333: Load: 0.168703 -333: Run: 0.138698 -333: Save: 0.112819 -333: Total: 0.42022 +333: Load: 0.064718 +333: Run: 0.074261 +333: Save: 0.139948 +333: Total: 0.278927 333: Finished! 333: 333: STDERR: 333: Not an error -329: Not an error -271/578 Test #329: plm-bsp-mse-o ......................... Passed 0.93 sec -test 366 - Start 366: plm-bsp-char-output-stats +446: RETVAL: 0 +446: STDOUT: Min: 0.000 -1.573 -1.573 +446: Mean: 13.794 -0.035 -0.034 +446: Max: 20.615 1.329 1.329 +446: Mean abs: 13.794 0.281 0.281 +446: Ave len: 13.805 +446: Jacobian: MINJAC -6.27693 MAXJAC 1.08247 +446: Energy: MINDIL -6.41 MAXDIL 0.0798482 +446: MAXSTRAIN 14.2 TOTSTRAIN 28436.8 +446: Second derivatives: MINSECDER 0 MAXSECDER 165 +446: AVESECDER 6.5 INTSECDER 8.13e+05 +446: Max second derivative at: (30 18 18) +446: +446: STDERR: +446: Not an error +309: RETVAL: 0 +309: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +309: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +309: Launching registration worker thread +309: Inside registration worker thread +309: Doing registration stage +309: [1] xf_in->m_type = 0, xf_out->m_type = 0 +309: Ready to start registration. +309: MSE [ 0] 18945.891 [ 0.035 secs] +309: MSE [ 1] 9778.825 [ 0.029 secs] +309: MSE [ 2] 3980.165 [ 0.059 secs] +309: MSE [ 3] 1233.515 [ 0.174 secs] +309: MSE [ 4] 374.936 [ 0.244 secs] +309: Done with registration. Writing output... +309: Deformation stats (out) +309: VF_MAX = 109.365 VF_AVG = 31.9237 +309: [2] xf_out->m_type = 8, xf_in->m_type = 0 +309: ** Registration worker thread finished. +309: Warping... +309: plm_warp_itk: xform_to_itk_vf +309: plm_warp_itk: convert_to_itk +309: plm_warp_itk: warping... +309: Saving image... +309: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-img.mha +309: Saving vf... +309: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-vf.mha +309: Load: 0.050914 +309: Run: 0.543229 +309: Save: 0.028059 +309: Total: 0.622202 +309: Finished! +309: +309: STDERR: +309: Not an error +434: RETVAL: 0 +434: STDOUT: MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872 +434: +434: STDERR: +434: Not an error +460: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +460: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha +460: EXPECTED_ERRNO is +463: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +463: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha +463: EXPECTED_ERRNO is +288/578 Test #559: proton-dose-4a ........................ Passed 2.32 sec +289/578 Test #309: plm-reg-itk-demons-sym-logd ........... Passed 0.88 sec +290/578 Test #329: plm-bsp-mse-o ......................... Passed 0.60 sec +291/578 Test #333: plm-bsp-mse-q ......................... Passed 0.59 sec +292/578 Test #398: plm-bsp-dcos-c-stats .................. Passed 0.49 sec +293/578 Test #401: plm-bsp-dcos-d-stats .................. Passed 0.48 sec +294/578 Test #404: plm-bsp-dcos-e-stats .................. Passed 0.48 sec +295/578 Test #410: plm-reg-multi-a-stats ................. Passed 0.47 sec +296/578 Test #416: plm-reg-dv-itk-translation-stats ...... Passed 0.46 sec +297/578 Test #428: plm-reg-trans-a-stats ................. Passed 0.41 sec +298/578 Test #434: plm-reg-trans-mi-a-stats .............. Passed 0.29 sec +299/578 Test #446: plm-compose-a-stats ................... Passed 0.26 sec +test 484 + Start 484: plm-intersect-stats -366: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-char-output-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -366: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -366: Test timeout computed to be: 1500 -272/578 Test #333: plm-bsp-mse-q ......................... Passed 0.85 sec -test 368 - Start 368: plm-bsp-rect +484: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +484: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +484: Test timeout computed to be: 1500 +test 487 + Start 487: plm-union-stats -368: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-rect" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -368: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -368: Test timeout computed to be: 1500 -341: RETVAL: 0 -341: STDOUT: MIN -991.894104 AVE -128.919357 MAX 0.000000 NONZERO 48385 NUMVOX 54872 -341: -341: STDERR: -341: Not an error -273/578 Test #341: plm-bsp-mi-c-2-stats .................. Passed 0.77 sec -test 370 - Start 370: plm-bsp-regularize-none-stats +487: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +487: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +487: Test timeout computed to be: 1500 +test 490 + Start 490: plm-threshold-a-stats -370: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-none-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -370: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -370: Test timeout computed to be: 1500 +490: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +490: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +490: Test timeout computed to be: 1500 +test 493 + Start 493: plm-threshold-b-stats + +493: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +493: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +493: Test timeout computed to be: 1500 +test 496 + Start 496: plm-threshold-c-stats + +496: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +496: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +496: Test timeout computed to be: 1500 +test 502 + Start 502: plm-warp-a-stats + +502: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +502: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +502: Test timeout computed to be: 1500 +test 505 + Start 505: plm-warp-b-stats-1 + +505: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +505: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +505: Test timeout computed to be: 1500 +test 507 + Start 507: plm-warp-b-stats-2 + +507: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +507: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +507: Test timeout computed to be: 1500 +test 510 + Start 510: plm-warp-c-stats + +510: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +510: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +510: Test timeout computed to be: 1500 +test 513 + Start 513: plm-warp-d-stats + +513: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +513: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +513: Test timeout computed to be: 1500 +test 516 + Start 516: plm-warp-f-stats-1 + +516: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-warp-f-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +516: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +516: Test timeout computed to be: 1500 +test 519 + Start 519: plm-warp-g-stats-1 + +519: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +519: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +519: Test timeout computed to be: 1500 +test 522 + Start 522: plm-warp-h-stats-1 + +522: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-h-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +522: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +522: Test timeout computed to be: 1500 +test 525 + Start 525: plm-warp-i-stats-1 + +525: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-i-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +525: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +525: Test timeout computed to be: 1500 +test 528 + Start 528: plm-xf-convert-b + +528: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +528: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +528: Test timeout computed to be: 1500 +test 532 + Start 532: plm-xf-convert-d-warp-1-stats + +532: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +532: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +532: Test timeout computed to be: 1500 +413: RETVAL: 0 +413: STDOUT: MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872 +413: +413: STDERR: +413: Not an error +300/578 Test #413: plm-reg-multi-b-stats ................. Passed 0.51 sec +471: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +471: PARMS is sift;--output-ps-1;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha +471: EXPECTED_ERRNO is +466: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +466: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd +466: EXPECTED_ERRNO is +565: RETVAL: 0 +565: STDOUT: +565: [PLAN] +565: patient : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha +565: target : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha +565: dose_out : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha +565: debug : 0 +565: dose norm : 100 +565: +565: [SETTINGS] +565: flavor: a ** +565: homo_approx: n ** +565: ray_step: 1 ** +565: aperture_out: ** +565: proj_dose_out: ** +565: proj_img_out: ** +565: range_comp_out: ** +565: sigma_out: ** +565: wed_out: ** +565: beam_weight: 1 ** +565: +565: [GEOMETRY & APERTURE] +565: source: 0 -2000 0 ** +565: isocenter: 0 0 0 ** +565: vup: 0 0 1 ** +565: offset: 1500 ** +565: ap_center in pixels: 20 20 ** +565: i_res: 41 41 ** +565: spacing: 3.75 3.75 ** +565: source_size: 0 ** +565: ap_file_in: ** +565: rc_file_in: ** +565: smearing: 5 ** +565: +565: [PEAK] +565: E0: P0 +565: spread: P0 +565: weight: P0 +565: +565: Start dose calculation Beam 1 +565: Plan_calc::compute_beam_dose(beam) entry -- +565: Setting RVRTS = 1 +565: FPD = 347.500001, BPD = 649.116731 +565: 41 41 302 +565: Setting RVRTS = 1 +565: FPD = 347.500001, BPD = 649.116731 +565: 41 41 302 +565: Setting RVRTS = 1 +565: FPD = 347.500001, BPD = 649.116731 +565: 41 41 302 +565: Priority 5. Target detected. +565: Compute target wepl_min_max... +565: Apply lateral smearing to the target... +565: Smearing = 5.000000, Smearing_ap = 3.750000 +565: Strel size = (1,1), (3,3) +565: 0 1 0 +565: 1 1 1 +565: 0 1 0 +565: Apply proximal and distal ... +565: Compute max wed... +565: Compute the aperture... +565: Max wed in the target is 117.554 mm. +565: Min wed in the target is 88.5523 mm. +565: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. +565: Min and max energies for treating the PTV: 109 MeV and 130 MeV. +565: +565: 22 Mono-energetic BP used: +565: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 +565: Optimization of the particle number map for any mono-energetic slice in progress... +565: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] +565: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U. +565: Dose normalized at the maximum to 1 x 100%. +565: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm +565: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha +565: Sigma: 0.000000 seconds +565: Calc: 1.755425 seconds +565: IO: 0.118902 seconds +565: Reformat: 0.000000 seconds +565: Misc: 0.015484 seconds +565: done. +565: +565: Total execution time : 2.082070 seconds. +565: +565: STDERR: +565: Not an error +437: RETVAL: 0 +437: STDOUT: MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872 +437: +437: STDERR: +437: Not an error +469: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +469: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd +469: EXPECTED_ERRNO is 331: RETVAL: 0 331: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 331: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -16241,22 +17042,22 @@ 331: Setting nmax, mmax = 375 21 331: >>> START 331: This problem is unconstrained. -331: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.097 s ] +331: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.022 s ] 331: CMIN 0.00 CAVG 0.00 CMAX 0.00 331: LSD 0.00 -331: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.037 s ] +331: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.032 s ] 331: CMIN -0.05 CAVG 0.01 CMAX 0.68 331: LSD 1.00 -331: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.067 s ] +331: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.040 s ] 331: CMIN -0.27 CAVG 0.05 CMAX 3.40 331: LSD 5.00 -331: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.029 s ] +331: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.060 s ] 331: CMIN -2.31 CAVG 0.43 CMAX 26.12 331: LSD 35.51 -331: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.055 s ] +331: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.033 s ] 331: CMIN -2.36 CAVG 0.35 CMAX 22.13 331: LSD 6.00 -331: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.036 s ] +331: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.020 s ] 331: CMIN -2.20 CAVG 0.36 CMAX 21.85 331: LSD 1.43 331: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -16287,176 +17088,250 @@ 331: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-img.mha 331: Saving vf... 331: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-p-vf.mha -331: Load: 0.0916219 -331: Run: 0.343338 -331: Save: 0.128416 -331: Total: 0.563376 +331: Load: 0.0620179 +331: Run: 0.223589 +331: Save: 0.102311 +331: Total: 0.387918 331: Finished! 331: 331: STDERR: 331: Not an error -307: RETVAL: 0 -307: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -307: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -307: Launching registration worker thread -307: Inside registration worker thread -307: Doing registration stage -307: [1] xf_in->m_type = 0, xf_out->m_type = 0 -307: Ready to start registration. -307: MSE [ 0] 18945.891 [ 0.152 secs] -307: MSE [ 1] 9788.487 [ 0.127 secs] -307: MSE [ 2] 4038.212 [ 0.160 secs] -307: MSE [ 3] 1283.245 [ 0.209 secs] -307: MSE [ 4] 392.878 [ 0.200 secs] -307: Done with registration. Writing output... -307: Deformation stats (out) -307: VF_MAX = 112.668 VF_AVG = 32.7138 -307: [2] xf_out->m_type = 8, xf_in->m_type = 0 -307: ** Registration worker thread finished. -307: Warping... -307: plm_warp_itk: xform_to_itk_vf -307: plm_warp_itk: convert_to_itk -307: plm_warp_itk: warping... -307: Saving image... -307: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-img.mha -307: Saving vf... -307: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd-vf.mha -307: Load: 0.045531 -307: Run: 0.853205 -307: Save: 0.0260768 -307: Total: 0.924813 -307: Finished! -307: -307: STDERR: -307: Not an error -274/578 Test #331: plm-bsp-mse-p ......................... Passed 0.98 sec -test 373 - Start 373: plm-bsp-regularize-analytic-stats - -373: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-analytic-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -373: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -373: Test timeout computed to be: 1500 -366: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -366: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output.mha -366: EXPECTED_ERRNO is -275/578 Test #307: plm-reg-itk-demons-logd ............... Passed 1.28 sec -test 376 - Start 376: plm-bsp-regularize-numeric-stats - -376: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-regularize-numeric-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -376: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -376: Test timeout computed to be: 1500 -370: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -370: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-vf.mha -370: EXPECTED_ERRNO is -368: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -368: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect.txt -368: EXPECTED_ERRNO is -373: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -373: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-vf.mha -373: EXPECTED_ERRNO is -376: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -376: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-vf.mha -376: EXPECTED_ERRNO is -352: RETVAL: 0 -352: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -352: -352: STDERR: -352: Not an error -276/578 Test #352: plm-bsp-openmp-stats .................. Passed 0.58 sec -test 380 - Start 380: plm-bsp-landmark-b-stats - -380: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -380: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -380: Test timeout computed to be: 1500 -380: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -380: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-img.mha -380: EXPECTED_ERRNO is -344: RETVAL: 0 -344: STDOUT: MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872 -344: -344: STDERR: -344: Not an error -277/578 Test #344: plm-bsp-mi-k-stats .................... Passed 0.73 sec -test 383 - Start 383: plm-bsp-landmark-c-stats - -383: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -383: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -383: Test timeout computed to be: 1500 -383: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -383: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-img.mha -383: EXPECTED_ERRNO is -305: RETVAL: 0 -305: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -305: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -305: Launching registration worker thread -305: Inside registration worker thread -305: Doing registration stage -305: [1] xf_in->m_type = 0, xf_out->m_type = 0 -305: Ready to start registration. -305: MSE [ 0] 18945.891 [ 0.228 secs] -305: MSE [ 1] 9795.787 [ 0.222 secs] -305: MSE [ 2] 3911.273 [ 0.170 secs] -305: MSE [ 3] 1186.045 [ 0.153 secs] -305: MSE [ 4] 314.763 [ 0.133 secs] -305: Done with registration. Writing output... -305: Deformation stats (out) -305: VF_MAX = 102.433 VF_AVG = 31.2783 -305: [2] xf_out->m_type = 8, xf_in->m_type = 0 -305: ** Registration worker thread finished. -305: Warping... -305: plm_warp_itk: xform_to_itk_vf -305: plm_warp_itk: convert_to_itk -305: plm_warp_itk: warping... -305: Saving image... -305: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-img.mha -305: Saving vf... -305: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff-vf.mha -305: Load: 0.138042 -305: Run: 0.919672 -305: Save: 0.0172031 -305: Total: 1.07492 -305: Finished! -305: -305: STDERR: -305: Not an error -347: RETVAL: 0 -347: STDOUT: MIN -997.631409 AVE -121.961853 MAX 0.000000 NONZERO 49452 NUMVOX 54872 -347: -347: STDERR: -347: Not an error -278/578 Test #305: plm-reg-itk-demons-diff ............... Passed 1.63 sec -test 386 - Start 386: plm-bsp-landmark-d-stats - -386: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -386: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -386: Test timeout computed to be: 1500 -279/578 Test #347: plm-bsp-gm-k-stats .................... Passed 0.86 sec -test 389 - Start 389: plm-bsp-landmark-e-stats - -389: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-e-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -389: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -389: Test timeout computed to be: 1500 -386: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -386: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-img.mha -386: EXPECTED_ERRNO is -389: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -389: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-img.mha -389: EXPECTED_ERRNO is -359: RETVAL: 0 -359: STDOUT: MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872 -359: -359: STDERR: -359: Not an error -362: RETVAL: 0 -362: STDOUT: MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872 -362: -362: STDERR: -362: Not an error +349: RETVAL: 0 +349: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +349: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +349: Loading fixed image [1]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +349: Loading moving image [1]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +349: Launching registration worker thread +349: Inside registration worker thread +349: Doing registration stage +349: [1] xf_in->m_type = 0, xf_out->m_type = 0 +349: RESAMPLE 1 1: (2 2 2), (2 2 2) +349: RESAMPLE 1 1: (2 2 2), (2 2 2) +349: volume_calc_grad_mag complete. +349: volume_calc_grad_mag complete. +349: volume_calc_grad complete. +349: RESAMPLE 1 1: (2 2 2), (2 2 2) +349: RESAMPLE 1 1: (2 2 2), (2 2 2) +349: volume_calc_grad complete. +349: bspline_xform_initialize +349: rdims = (2,2,2) +349: vox_per_rgn = (11,11,11) +349: cdims = (5 5 5) +349: Algorithm flavor = c +349: Threading = 0 +349: >> Checking JH allocation +349: >> Performing JH allocation +349: BSPLINE PARMS +349: max_its = 5 +349: max_feval = 5 +349: BSPLINE XFORM HEADER +349: vox_per_rgn = 11 11 11 +349: roi_offset = 0 0 0 +349: roi_dim = 19 19 19 +349: img_dc = 1 0 0 0 1 0 0 0 1 +349: BST METRICS +349: MET 110100 GM 0.100000 +349: MET 110100 MI 100.000000 +349: >> Performing JH initialization +349: Setting nmax, mmax = 375 21 +349: >>> START +349: This problem is unconstrained. +349: [ 0, 0] SCORE -23.086 NV 6859 GM 11.933 GN 2.8 [ 0.014 s ] +349: GM 172.276 MI -0.4031359 CMIN 0.01 CAVG 0.01 CMAX 0.01 +349: LSD 0.00 +349: [ 0, 1] SCORE -21.366 NV 6859 GM -20.848 GN 4.05 [ 0.014 s ] +349: GM 172.158 MI -0.3858200 CMIN -0.49 CAVG -0.00 CMAX 0.08 +349: LSD 1.00 +349: [ 0, 2] SCORE -22.915 NV 6859 GM -12.881 GN 2.54 [ 0.014 s ] +349: GM 172.298 MI -0.4014443 CMIN -0.08 CAVG 0.01 CMAX 0.02 +349: LSD 0.18 +349: [ 0, 3] SCORE -23.222 NV 6859 GM -1.121 GN 1.07 [ 0.014 s ] +349: GM 172.313 MI -0.4045370 CMIN -0.01 CAVG 0.01 CMAX 0.01 +349: LSD 0.05 +349: [ 1, 4] SCORE -23.229 NV 6859 GM 16.621 GN 3.63 [ 0.013 s ] +349: GM 172.348 MI -0.4046354 CMIN -0.01 CAVG 0.01 CMAX 0.01 +349: LSD 0.01 +349: [ 2, 5] SCORE -22.889 NV 6859 GM -16.998 GN 4.96 [ 0.013 s ] +349: GM 172.750 MI -0.4016393 CMIN -0.14 CAVG 0.01 CMAX 0.04 +349: LSD 0.20 +349: [2] xf_out->m_type = 9, xf_in->m_type = 0 +349: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +349: bspline_xform_initialize +349: rdims = (2,2,2) +349: vox_per_rgn = (22,22,22) +349: cdims = (5 5 5) +349: Writing transformation ... +349: Warping... +349: Running: plm_warp_native +349: Converting input image... +349: Converting xform... +349: bspline_xform_initialize +349: rdims = (2,2,2) +349: vox_per_rgn = (22,22,22) +349: cdims = (5 5 5) +349: ** Registration worker thread finished. +349: Creating output vf... +349: Creating output volume... +349: Running native warper... +349: bspline_warp complete. +349: Back convert to original type... +349: > Convert vf to itk +349: > Conversion complete. +349: plm_warp_native is complete. +349: Saving image... +349: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha +349: Saving vf... +349: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-vf.mha +349: Load: 0.15631 +349: Run: 0.09797 +349: Save: 0.085325 +349: Total: 0.339605 +349: Finished! +349: +349: STDERR: +349: Not an error +354: RETVAL: 0 +354: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +354: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +354: Launching registration worker thread +354: Inside registration worker thread +354: Doing registration stage +354: [1] xf_in->m_type = 0, xf_out->m_type = 0 +354: RESAMPLE 1 1: (2 2 2), (2 2 2) +354: RESAMPLE 1 1: (2 2 2), (2 2 2) +354: volume_calc_grad complete. +354: bspline_xform_initialize +354: rdims = (2,2,2) +354: vox_per_rgn = (11,11,11) +354: cdims = (5 5 5) +354: Algorithm flavor = c +354: Threading = 0 +354: >> Checking JH allocation +354: BSPLINE PARMS +354: max_its = 5 +354: max_feval = 5 +354: BSPLINE XFORM HEADER +354: vox_per_rgn = 11 11 11 +354: roi_offset = 0 0 0 +354: roi_dim = 19 19 19 +354: img_dc = 1 0 0 0 1 0 0 0 1 +354: BST METRICS +354: MET 110100 MSE 1.000000 +354: Setting nmax, mmax = 375 21 +354: >>> START +354: This problem is unconstrained. +354: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.004 s ] +354: CMIN 0.00 CAVG 0.00 CMAX 0.00 +354: LSD 0.00 +354: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.004 s ] +354: CMIN -0.07 CAVG 0.01 CMAX 0.68 +354: LSD 1.00 +354: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.019 s ] +354: CMIN -0.35 CAVG 0.05 CMAX 3.40 +354: LSD 5.00 +354: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.006 s ] +354: CMIN -1.48 CAVG 0.20 CMAX 14.26 +354: LSD 21.00 +354: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.004 s ] +354: CMIN -1.74 CAVG 0.44 CMAX 32.50 +354: LSD 27.95 +354: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.004 s ] +354: CMIN -1.73 CAVG 0.34 CMAX 23.99 +354: LSD 13.11 +354: [2] xf_out->m_type = 9, xf_in->m_type = 0 +354: Doing registration stage +354: [1] xf_in->m_type = 9, xf_out->m_type = 0 +354: RESAMPLE 1 1: (2 2 2), (2 2 2) +354: RESAMPLE 1 1: (2 2 2), (2 2 2) +354: volume_calc_grad complete. +354: bspline_xform_initialize +354: rdims = (2,2,2) +354: vox_per_rgn = (11,11,11) +354: cdims = (5 5 5) +354: Algorithm flavor = c +354: Threading = 0 +354: >> Checking JH allocation +354: BSPLINE PARMS +354: max_its = 5 +354: max_feval = 5 +354: BSPLINE XFORM HEADER +354: vox_per_rgn = 11 11 11 +354: roi_offset = 0 0 0 +354: roi_dim = 19 19 19 +354: img_dc = 1 0 0 0 1 0 0 0 1 +354: BST METRICS +354: MET 110100 MSE 1.000000 +354: Setting nmax, mmax = 375 21 +354: >>> START +354: This problem is unconstrained. +354: [ 0, 0] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.004 s ] +354: CMIN -1.73 CAVG 0.34 CMAX 23.99 +354: LSD 0.00 +354: [ 0, 1] MSE 245.572 NV 5873 GM -24.090 GN 31.6 [ 0.005 s ] +354: CMIN -1.74 CAVG 0.33 CMAX 23.36 +354: LSD 1.00 +354: [ 1, 2] MSE 184.553 NV 5937 GM -53.657 GN 19.1 [ 0.007 s ] +354: CMIN -1.91 CAVG 0.35 CMAX 21.57 +354: LSD 3.72 +354: [ 2, 3] MSE 169.679 NV 5953 GM -95.518 GN 19.6 [ 0.010 s ] +354: CMIN -2.31 CAVG 0.35 CMAX 20.63 +354: LSD 2.11 +354: [ 3, 4] MSE 160.980 NV 5975 GM -14.478 GN 20.7 [ 0.006 s ] +354: CMIN -3.42 CAVG 0.39 CMAX 17.80 +354: LSD 5.62 +354: [ 4, 5] MSE 133.675 NV 5940 GM -9.965 GN 18.9 [ 0.013 s ] +354: CMIN -3.93 CAVG 0.41 CMAX 17.38 +354: LSD 2.38 +354: [2] xf_out->m_type = 9, xf_in->m_type = 9 +354: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +354: bspline_xform_initialize +354: rdims = (2,2,2) +354: vox_per_rgn = (22,22,22) +354: cdims = (5 5 5) +354: ** Registration worker thread finished. +354: Writing transformation ... +354: Warping... +354: Running: plm_warp_native +354: Converting input image... +354: Converting xform... +354: bspline_xform_initialize +354: rdims = (2,2,2) +354: vox_per_rgn = (22,22,22) +354: cdims = (5 5 5) +354: Creating output vf... +354: Creating output volume... +354: Running native warper... +354: bspline_warp complete. +354: Back convert to original type... +354: > Convert vf to itk +354: > Conversion complete. +354: plm_warp_native is complete. +354: Saving image... +354: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha +354: Saving vf... +354: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-vf.mha +354: Load: 0.0601568 +354: Run: 0.114142 +354: Save: 0.165006 +354: Total: 0.339305 +354: Finished! +354: +354: STDERR: +354: Not an error +478: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +478: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png +478: EXPECTED_ERRNO is +481: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +481: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png +481: EXPECTED_ERRNO is +475: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +475: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png +475: EXPECTED_ERRNO is +440: RETVAL: 0 +440: STDOUT: MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872 +440: +440: STDERR: +440: Not an error 335: RETVAL: 0 335: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha 335: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha @@ -16487,22 +17362,22 @@ 335: Setting nmax, mmax = 375 21 335: >>> START 335: This problem is unconstrained. -335: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.073 s ] +335: [ 0, 0] MSE 18756.236 NV 6859 GM -3516.347 GN 958 [ 0.050 s ] 335: CMIN 0.00 CAVG 0.00 CMAX 0.00 335: LSD 0.00 -335: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.032 s ] +335: [ 0, 1] MSE 17837.807 NV 6859 GM -3671.469 GN 971 [ 0.047 s ] 335: CMIN -0.05 CAVG 0.01 CMAX 0.68 335: LSD 1.00 -335: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.020 s ] +335: [ 0, 2] MSE 14356.300 NV 6850 GM -3106.959 GN 834 [ 0.033 s ] 335: CMIN -0.27 CAVG 0.05 CMAX 3.40 335: LSD 5.00 335: [ 1, 3] MSE 822.836 NV 5638 GM 866.827 GN 180 [ 0.032 s ] 335: CMIN -2.31 CAVG 0.43 CMAX 26.12 335: LSD 35.51 -335: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.023 s ] +335: [ 2, 4] MSE 332.350 NV 5821 GM -189.482 GN 52.6 [ 0.030 s ] 335: CMIN -2.36 CAVG 0.35 CMAX 22.13 335: LSD 6.00 -335: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.025 s ] +335: [ 3, 5] MSE 268.170 NV 5826 GM -99.417 GN 39.3 [ 0.043 s ] 335: CMIN -2.20 CAVG 0.36 CMAX 21.85 335: LSD 1.43 335: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -16533,35 +17408,456 @@ 335: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha 335: Saving vf... 335: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-vf.mha -335: Load: 0.234351 -335: Run: 0.265869 -335: Save: 0.13479 -335: Total: 0.63501 +335: Load: 0.058974 +335: Run: 0.245348 +335: Save: 0.064996 +335: Total: 0.369318 335: Finished! 335: 335: STDERR: 335: Not an error -280/578 Test #359: plm-bsp-ushort-stats .................. Passed 0.72 sec -281/578 Test #362: plm-bsp-double-stats .................. Passed 0.59 sec -test 392 - Start 392: plm-bsp-dcos-a-stats +484: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +484: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha +484: EXPECTED_ERRNO is +487: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +487: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha +487: EXPECTED_ERRNO is +490: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +490: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha +490: EXPECTED_ERRNO is +493: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +493: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha +493: EXPECTED_ERRNO is +496: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +496: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha +496: EXPECTED_ERRNO is +502: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +502: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha +502: EXPECTED_ERRNO is +505: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +505: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha +505: EXPECTED_ERRNO is +507: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +507: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha +507: EXPECTED_ERRNO is +513: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +513: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha +513: EXPECTED_ERRNO is +301/578 Test #565: proton-dose-5a ........................ Passed 2.35 sec +302/578 Test #331: plm-bsp-mse-p ......................... Passed 0.64 sec +303/578 Test #335: plm-bsp-mse-r ......................... Passed 0.61 sec +304/578 Test #349: plm-bsp-sm-multi-a .................... Passed 0.60 sec +305/578 Test #354: plm-bsp-resume ........................ Passed 0.59 sec +306/578 Test #437: plm-reg-autores-a-stats ............... Passed 0.33 sec +307/578 Test #440: plm-reg-autores-b-stats ............... Passed 0.32 sec +test 535 + Start 535: plm-xf-convert-d-warp-2-stats -392: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -392: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -392: Test timeout computed to be: 1500 -test 395 - Start 395: plm-bsp-dcos-b-stats +535: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +535: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +535: Test timeout computed to be: 1500 +test 541 + Start 541: plm-xf-convert-h-stats -395: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -395: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -395: Test timeout computed to be: 1500 -282/578 Test #335: plm-bsp-mse-r ......................... Passed 1.36 sec -test 398 - Start 398: plm-bsp-dcos-c-stats +541: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +541: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +541: Test timeout computed to be: 1500 +test 544 + Start 544: plm-xf-convert-i-stats -398: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -398: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -398: Test timeout computed to be: 1500 +544: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-i-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +544: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +544: Test timeout computed to be: 1500 +test 547 + Start 547: xf-invert-vf-zero-1-stats + +547: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +547: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +547: Test timeout computed to be: 1500 +test 550 + Start 550: xf-invert-vf-trans-1-stats + +550: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +550: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +550: Test timeout computed to be: 1500 +test 552 + Start 552: xf-invert-vrs-a + +552: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +552: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +552: Test timeout computed to be: 1500 +test 554 + Start 554: xf-invert-vrs-b + +554: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +554: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +554: Test timeout computed to be: 1500 +test 557 + Start 557: proton-dose-1-stats + +557: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +557: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +557: Test timeout computed to be: 1500 +510: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +510: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha +510: EXPECTED_ERRNO is +516: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +516: PARMS is header;plm-warp-f-img.nrrd +516: EXPECTED_ERRNO is +522: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +522: PARMS is stats;plm-warp-h-img.nrrd +522: EXPECTED_ERRNO is +431: RETVAL: 0 +431: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 +431: +431: STDERR: +431: Not an error +308/578 Test #431: plm-reg-trans-b-stats ................. Passed 0.39 sec +519: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +519: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd +519: EXPECTED_ERRNO is +368: RETVAL: 0 +368: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +368: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +368: Launching registration worker thread +368: Inside registration worker thread +368: Doing registration stage +368: [1] xf_in->m_type = 0, xf_out->m_type = 0 +368: RESAMPLE 1 1: (2 2 2), (2 2 2) +368: RESAMPLE 1 1: (2 2 2), (2 2 2) +368: volume_calc_grad complete. +368: bspline_xform_initialize +368: Warning: vox_per_rgn was less than 4. +368: Warning: vox_per_rgn was less than 4. +368: Warning: vox_per_rgn was less than 4. +368: rdims = (5,5,5) +368: vox_per_rgn = (4,4,4) +368: cdims = (8 8 8) +368: Algorithm flavor = g +368: Threading = 0 +368: >> Checking JH allocation +368: BSPLINE PARMS +368: max_its = 5 +368: max_feval = 5 +368: BSPLINE XFORM HEADER +368: vox_per_rgn = 4 4 4 +368: roi_offset = 0 0 0 +368: roi_dim = 19 19 19 +368: img_dc = 1 0 0 0 1 0 0 0 1 +368: BST METRICS +368: MET 110100 MSE 1.000000 +368: Setting nmax, mmax = 1536 41 +368: >>> START +368: This problem is unconstrained. +368: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.057 s ] +368: CMIN 0.00 CAVG 0.00 CMAX 0.00 +368: LSD 0.00 +368: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.048 s ] +368: CMIN -0.60 CAVG -0.00 CMAX 0.08 +368: LSD 1.00 +368: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.040 s ] +368: CMIN -2.99 CAVG -0.01 CMAX 0.42 +368: LSD 5.00 +368: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.047 s ] +368: CMIN -12.56 CAVG -0.05 CMAX 1.74 +368: LSD 21.00 +368: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.027 s ] +368: CMIN -54.37 CAVG -0.20 CMAX 6.52 +368: LSD 67.10 +368: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.005 s ] +368: CMIN -51.91 CAVG -0.18 CMAX 5.91 +368: LSD 13.48 +368: [2] xf_out->m_type = 9, xf_in->m_type = 0 +368: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +368: bspline_xform_initialize +368: rdims = (5,5,5) +368: vox_per_rgn = (8,8,8) +368: cdims = (8 8 8) +368: ** Registration worker thread finished. +368: Writing transformation ... +368: Warping... +368: Running: plm_warp_native +368: Converting input image... +368: Converting xform... +368: bspline_xform_initialize +368: rdims = (5,5,5) +368: vox_per_rgn = (8,8,8) +368: cdims = (8 8 8) +368: Creating output vf... +368: Creating output volume... +368: Running native warper... +368: bspline_warp complete. +368: Back convert to original type... +368: > Convert vf to itk +368: > Conversion complete. +368: plm_warp_native is complete. +368: Saving image... +368: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-img.mha +368: Saving vf... +368: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd +368: Load: 0.069751 +368: Run: 0.230434 +368: Save: 0.0754831 +368: Total: 0.375668 +368: Finished! +368: +368: STDERR: +368: Not an error +309/578 Test #368: plm-bsp-rect .......................... Passed 0.60 sec +525: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +525: PARMS is stats;plm-warp-i-img.nrrd +525: EXPECTED_ERRNO is +532: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +532: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd +532: EXPECTED_ERRNO is +528: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +528: PARMS is xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10 +528: EXPECTED_ERRNO is +571: RETVAL: 0 +571: STDOUT: +571: [PLAN] +571: patient : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha +571: target : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha +571: dose_out : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha +571: debug : 0 +571: dose norm : 100 +571: +571: [SETTINGS] +571: flavor: a ** +571: homo_approx: n ** +571: ray_step: 1 ** +571: aperture_out: ** +571: proj_dose_out: ** +571: proj_img_out: ** +571: range_comp_out: ** +571: sigma_out: ** +571: wed_out: ** +571: beam_weight: 1 ** +571: +571: [GEOMETRY & APERTURE] +571: source: 0 -2000 0 ** +571: isocenter: 0 0 0 ** +571: vup: 0 0 1 ** +571: offset: 1500 ** +571: ap_center in pixels: 20 20 ** +571: i_res: 41 41 ** +571: spacing: 3.75 3.75 ** +571: source_size: 0 ** +571: ap_file_in: ** +571: rc_file_in: ** +571: smearing: 5 ** +571: +571: [PEAK] +571: E0: P0 +571: spread: P0 +571: weight: P0 +571: +571: Start dose calculation Beam 1 +571: Plan_calc::compute_beam_dose(beam) entry -- +571: Setting RVRTS = 1 +571: FPD = 347.500001, BPD = 649.116731 +571: 41 41 302 +571: Setting RVRTS = 1 +571: FPD = 347.500001, BPD = 649.116731 +571: 41 41 302 +571: Setting RVRTS = 1 +571: FPD = 347.500001, BPD = 649.116731 +571: 41 41 302 +571: Priority 5. Target detected. +571: Compute target wepl_min_max... +571: Apply lateral smearing to the target... +571: Smearing = 5.000000, Smearing_ap = 3.750000 +571: Strel size = (1,1), (3,3) +571: 0 1 0 +571: 1 1 1 +571: 0 1 0 +571: Apply proximal and distal ... +571: Compute max wed... +571: Compute the aperture... +571: Max wed in the target is 117.554 mm. +571: Min wed in the target is 88.5523 mm. +571: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. +571: Min and max energies for treating the PTV: 109 MeV and 130 MeV. +571: +571: 22 Mono-energetic BP used: +571: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 +571: Optimization of the particle number map for any mono-energetic slice in progress... +571: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] +571: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U. +571: Dose normalized at the maximum to 1 x 100%. +571: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm +571: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha +571: Sigma: 0.000000 seconds +571: Calc: 1.832011 seconds +571: IO: 0.163891 seconds +571: Reformat: 0.000000 seconds +571: Misc: 0.009355 seconds +571: done. +571: +571: Total execution time : 2.043579 seconds. +571: +571: STDERR: +571: Not an error +356: RETVAL: 0 +356: STDOUT: Plastimatch 1.9.4 +356: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha +356: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha +356: Launching registration worker thread +356: Inside registration worker thread +356: Doing registration stage +356: [1] xf_in->m_type = 0, xf_out->m_type = 0 +356: RESAMPLE 1 1: (2 2 2), (2 2 2) +356: RESAMPLE 1 1: (2 2 2), (2 2 2) +356: volume_calc_grad complete. +356: bspline_xform_initialize +356: rdims = (2,2,2) +356: vox_per_rgn = (11,11,11) +356: cdims = (5 5 5) +356: Algorithm flavor = g +356: Threading = 0 +356: >> Checking JH allocation +356: BSPLINE PARMS +356: max_its = 5 +356: max_feval = 5 +356: BSPLINE XFORM HEADER +356: vox_per_rgn = 11 11 11 +356: roi_offset = 0 0 0 +356: roi_dim = 19 19 19 +356: img_dc = 1 0 0 0 1 0 0 0 1 +356: BST METRICS +356: MET 110100 MSE 1.000000 +356: Setting nmax, mmax = 375 21 +356: >>> START +356: This problem is unconstrained. +356: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.047 s ] +356: CMIN 0.00 CAVG 0.00 CMAX 0.00 +356: LSD 0.00 +356: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.058 s ] +356: CMIN -0.07 CAVG 0.01 CMAX 0.68 +356: LSD 1.00 +356: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.023 s ] +356: CMIN -0.35 CAVG 0.05 CMAX 3.40 +356: LSD 5.00 +356: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.030 s ] +356: CMIN -1.48 CAVG 0.20 CMAX 14.26 +356: LSD 21.00 +356: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.033 s ] +356: CMIN -1.74 CAVG 0.44 CMAX 32.50 +356: LSD 27.95 +356: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.022 s ] +356: CMIN -1.73 CAVG 0.34 CMAX 23.99 +356: LSD 13.11 +356: [2] xf_out->m_type = 9, xf_in->m_type = 0 +356: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +356: bspline_xform_initialize +356: rdims = (2,2,2) +356: vox_per_rgn = (22,22,22) +356: cdims = (5 5 5) +356: ** Registration worker thread finished. +356: Writing transformation ... +356: Warping... +356: Running: plm_warp_native +356: Converting input image... +356: Converting xform... +356: bspline_xform_initialize +356: rdims = (2,2,2) +356: vox_per_rgn = (22,22,22) +356: cdims = (5 5 5) +356: Creating output vf... +356: Creating output volume... +356: Running native warper... +356: bspline_warp complete. +356: Back convert to original type... +356: > Convert vf to itk +356: > Conversion complete. +356: plm_warp_native is complete. +356: Saving image... +356: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-img.nrrd +356: Saving vf... +356: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-vf.nrrd +356: Plastimatch 1.9.4 +356: Load: 0.047457 +356: Run: 0.29347 +356: Save: 0.0638618 +356: Total: 0.404789 +356: Finished! +356: +356: STDERR: +356: Not an error +535: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +535: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd +535: EXPECTED_ERRNO is +test 560 + Start 560: proton-dose-4a-stats + +560: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +560: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +560: Test timeout computed to be: 1500 +test 566 + Start 566: proton-dose-5a-stats + +566: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +566: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +566: Test timeout computed to be: 1500 +310/578 Test #356: plm-bsp-logfile ....................... Passed 0.63 sec +541: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +541: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd +541: EXPECTED_ERRNO is +544: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +544: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd +544: EXPECTED_ERRNO is +547: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +547: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha +547: EXPECTED_ERRNO is +550: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +550: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha +550: EXPECTED_ERRNO is +554: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +554: PARMS is xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm +554: EXPECTED_ERRNO is +552: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +552: PARMS is xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm +552: EXPECTED_ERRNO is +557: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +557: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha +557: EXPECTED_ERRNO is +311/578 Test #571: proton-dose-6a ........................ Passed 2.25 sec +test 572 + Start 572: proton-dose-6a-stats + +572: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +572: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +572: Test timeout computed to be: 1500 +test 576 + Start 576: wed-a + +576: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +576: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +576: Test timeout computed to be: 1500 +560: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +560: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha +560: EXPECTED_ERRNO is 562: RETVAL: 0 562: STDOUT: 562: [PLAN] @@ -16863,1181 +18159,27 @@ 562: Dose normalized at the maximum to 1 x 100%. 562: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm 562: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha -562: Sigma: 0.320447 seconds -562: Calc: 5.259327 seconds -562: IO: 0.208946 seconds -562: Reformat: 0.081909 seconds -562: Misc: 0.033895 seconds +562: Sigma: 0.228895 seconds +562: Calc: 1.893946 seconds +562: IO: 0.074033 seconds +562: Reformat: 0.017123 seconds +562: Misc: 0.012478 seconds 562: done. 562: -562: Total execution time : 5.905032 seconds. +562: Total execution time : 2.226749 seconds. 562: 562: STDERR: 562: Not an error -395: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -395: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-img.nrrd -395: EXPECTED_ERRNO is -283/578 Test #562: proton-dose-4d ........................ Passed 6.49 sec -test 401 - Start 401: plm-bsp-dcos-d-stats - -401: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -401: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -401: Test timeout computed to be: 1500 -398: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -398: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-img.nrrd -398: EXPECTED_ERRNO is -392: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -392: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-img.nrrd -392: EXPECTED_ERRNO is -401: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -401: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-img.nrrd -401: EXPECTED_ERRNO is -354: RETVAL: 0 -354: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -354: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -354: Launching registration worker thread -354: Inside registration worker thread -354: Doing registration stage -354: [1] xf_in->m_type = 0, xf_out->m_type = 0 -354: RESAMPLE 1 1: (2 2 2), (2 2 2) -354: RESAMPLE 1 1: (2 2 2), (2 2 2) -354: volume_calc_grad complete. -354: bspline_xform_initialize -354: rdims = (2,2,2) -354: vox_per_rgn = (11,11,11) -354: cdims = (5 5 5) -354: Algorithm flavor = c -354: Threading = 0 -354: >> Checking JH allocation -354: BSPLINE PARMS -354: max_its = 5 -354: max_feval = 5 -354: BSPLINE XFORM HEADER -354: vox_per_rgn = 11 11 11 -354: roi_offset = 0 0 0 -354: roi_dim = 19 19 19 -354: img_dc = 1 0 0 0 1 0 0 0 1 -354: BST METRICS -354: MET 110100 MSE 1.000000 -354: Setting nmax, mmax = 375 21 -354: >>> START -354: This problem is unconstrained. -354: [ 0, 0] MSE 18756.248 NV 6859 GM -2980.062 GN 852 [ 0.020 s ] -354: CMIN 0.00 CAVG 0.00 CMAX 0.00 -354: LSD 0.00 -354: [ 0, 1] MSE 17838.643 NV 6859 GM -2882.390 GN 824 [ 0.005 s ] -354: CMIN -0.07 CAVG 0.01 CMAX 0.68 -354: LSD 1.00 -354: [ 0, 2] MSE 14464.868 NV 6858 GM -2822.145 GN 824 [ 0.004 s ] -354: CMIN -0.35 CAVG 0.05 CMAX 3.40 -354: LSD 5.00 -354: [ 0, 3] MSE 3829.069 NV 6286 GM -1585.570 GN 459 [ 0.004 s ] -354: CMIN -1.48 CAVG 0.20 CMAX 14.26 -354: LSD 21.00 -354: [ 1, 4] MSE 3098.610 NV 5455 GM 1176.112 GN 399 [ 0.005 s ] -354: CMIN -1.74 CAVG 0.44 CMAX 32.50 -354: LSD 27.95 -354: [ 2, 5] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.005 s ] -354: CMIN -1.73 CAVG 0.34 CMAX 23.99 -354: LSD 13.11 -354: [2] xf_out->m_type = 9, xf_in->m_type = 0 -354: Doing registration stage -354: [1] xf_in->m_type = 9, xf_out->m_type = 0 -354: RESAMPLE 1 1: (2 2 2), (2 2 2) -354: RESAMPLE 1 1: (2 2 2), (2 2 2) -354: volume_calc_grad complete. -354: bspline_xform_initialize -354: rdims = (2,2,2) -354: vox_per_rgn = (11,11,11) -354: cdims = (5 5 5) -354: Algorithm flavor = c -354: Threading = 0 -354: >> Checking JH allocation -354: BSPLINE PARMS -354: max_its = 5 -354: max_feval = 5 -354: BSPLINE XFORM HEADER -354: vox_per_rgn = 11 11 11 -354: roi_offset = 0 0 0 -354: roi_dim = 19 19 19 -354: img_dc = 1 0 0 0 1 0 0 0 1 -354: BST METRICS -354: MET 110100 MSE 1.000000 -354: Setting nmax, mmax = 375 21 -354: >>> START -354: This problem is unconstrained. -354: [ 0, 0] MSE 282.038 NV 5851 GM 54.493 GN 43.4 [ 0.009 s ] -354: CMIN -1.73 CAVG 0.34 CMAX 23.99 -354: LSD 0.00 -354: [ 0, 1] MSE 245.572 NV 5873 GM -24.090 GN 31.6 [ 0.004 s ] -354: CMIN -1.74 CAVG 0.33 CMAX 23.36 -354: LSD 1.00 -354: [ 1, 2] MSE 184.553 NV 5937 GM -53.657 GN 19.1 [ 0.004 s ] -354: CMIN -1.91 CAVG 0.35 CMAX 21.57 -354: LSD 3.72 -354: [ 2, 3] MSE 169.679 NV 5953 GM -95.518 GN 19.6 [ 0.004 s ] -354: CMIN -2.31 CAVG 0.35 CMAX 20.63 -354: LSD 2.11 -354: [ 3, 4] MSE 160.980 NV 5975 GM -14.478 GN 20.7 [ 0.004 s ] -354: CMIN -3.42 CAVG 0.39 CMAX 17.80 -354: LSD 5.62 -354: [ 4, 5] MSE 133.675 NV 5940 GM -9.965 GN 18.9 [ 0.004 s ] -354: CMIN -3.93 CAVG 0.41 CMAX 17.38 -354: LSD 2.38 -354: [2] xf_out->m_type = 9, xf_in->m_type = 9 -354: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -354: bspline_xform_initialize -354: rdims = (2,2,2) -354: vox_per_rgn = (22,22,22) -354: cdims = (5 5 5) -354: ** Registration worker thread finished. -354: Writing transformation ... -354: Warping... -354: Running: plm_warp_native -354: Converting input image... -354: Converting xform... -354: bspline_xform_initialize -354: rdims = (2,2,2) -354: vox_per_rgn = (22,22,22) -354: cdims = (5 5 5) -354: Creating output vf... -354: Creating output volume... -354: Running native warper... -354: bspline_warp complete. -354: Back convert to original type... -354: > Convert vf to itk -354: > Conversion complete. -354: plm_warp_native is complete. -354: Saving image... -354: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha -354: Saving vf... -354: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-vf.mha -354: Load: 0.14131 -354: Run: 0.127651 -354: Save: 0.0832522 -354: Total: 0.352213 -354: Finished! -354: -354: STDERR: -354: Not an error -284/578 Test #354: plm-bsp-resume ........................ Passed 1.07 sec -test 404 - Start 404: plm-bsp-dcos-e-stats - -404: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-e-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -404: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -404: Test timeout computed to be: 1500 -366: RETVAL: 0 -366: STDOUT: MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872 -366: -366: STDERR: -366: Not an error -370: RETVAL: 0 -370: STDOUT: Min: -9.485 -9.485 -9.485 -370: Mean: -0.004 -0.004 -0.004 -370: Max: 9.819 9.819 9.819 -370: Mean abs: 0.215 0.215 0.215 -370: Ave len: 0.425 -370: Jacobian: MINJAC 0.315393 MAXJAC 1.06557 -370: Energy: MINDIL -0.958 MAXDIL 0.0701264 -370: MAXSTRAIN 0.0879 TOTSTRAIN 112.949 -370: Second derivatives: MINSECDER 0 MAXSECDER 0.0362 -370: AVESECDER 0.000354 INTSECDER 4.42e+04 -370: Max second derivative at: (20 20 16) -370: -285/578 Test #366: plm-bsp-char-output-stats ............. Passed 0.73 sec -test 407 - Start 407: plm-bsp-dcos-f-stats - -407: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-dcos-f-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -407: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -407: Test timeout computed to be: 1500 -370: STDERR: -370: Not an error -286/578 Test #370: plm-bsp-regularize-none-stats ......... Passed 0.73 sec -test 410 - Start 410: plm-reg-multi-a-stats - -410: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -410: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -410: Test timeout computed to be: 1500 -380: RETVAL: 0 -380: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 -380: -380: STDERR: -380: Not an error -407: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -407: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-img.nrrd -407: EXPECTED_ERRNO is -287/578 Test #380: plm-bsp-landmark-b-stats .............. Passed 0.62 sec -test 413 - Start 413: plm-reg-multi-b-stats - -413: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-multi-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -413: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -413: Test timeout computed to be: 1500 -410: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -410: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-vf.nrrd -410: EXPECTED_ERRNO is -404: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -404: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-img.nrrd -404: EXPECTED_ERRNO is -413: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -413: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-img.nrrd -413: EXPECTED_ERRNO is -356: RETVAL: 0 -356: STDOUT: Plastimatch 1.9.4 -356: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -356: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -356: Launching registration worker thread -356: Inside registration worker thread -356: Doing registration stage -356: [1] xf_in->m_type = 0, xf_out->m_type = 0 -356: RESAMPLE 1 1: (2 2 2), (2 2 2) -356: RESAMPLE 1 1: (2 2 2), (2 2 2) -356: volume_calc_grad complete. -356: bspline_xform_initialize -356: rdims = (2,2,2) -356: vox_per_rgn = (11,11,11) -356: cdims = (5 5 5) -356: Algorithm flavor = g -356: Threading = 0 -356: >> Checking JH allocation -356: BSPLINE PARMS -356: max_its = 5 -356: max_feval = 5 -356: BSPLINE XFORM HEADER -356: vox_per_rgn = 11 11 11 -356: roi_offset = 0 0 0 -356: roi_dim = 19 19 19 -356: img_dc = 1 0 0 0 1 0 0 0 1 -356: BST METRICS -356: MET 110100 MSE 1.000000 -356: Setting nmax, mmax = 375 21 -356: >>> START -356: This problem is unconstrained. -356: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.064 s ] -356: CMIN 0.00 CAVG 0.00 CMAX 0.00 -356: LSD 0.00 -356: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.035 s ] -356: CMIN -0.07 CAVG 0.01 CMAX 0.68 -356: LSD 1.00 -356: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.020 s ] -356: CMIN -0.35 CAVG 0.05 CMAX 3.40 -356: LSD 5.00 -356: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.028 s ] -356: CMIN -1.48 CAVG 0.20 CMAX 14.26 -356: LSD 21.00 -356: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.020 s ] -356: CMIN -1.74 CAVG 0.44 CMAX 32.50 -356: LSD 27.95 -356: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.028 s ] -356: CMIN -1.73 CAVG 0.34 CMAX 23.99 -356: LSD 13.11 -356: [2] xf_out->m_type = 9, xf_in->m_type = 0 -356: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -356: bspline_xform_initialize -356: rdims = (2,2,2) -356: vox_per_rgn = (22,22,22) -356: cdims = (5 5 5) -356: ** Registration worker thread finished. -356: Writing transformation ... -356: Warping... -356: Running: plm_warp_native -356: Converting input image... -356: Converting xform... -356: bspline_xform_initialize -356: rdims = (2,2,2) -356: vox_per_rgn = (22,22,22) -356: cdims = (5 5 5) -356: Creating output vf... -356: Creating output volume... -356: Running native warper... -356: bspline_warp complete. -356: Back convert to original type... -356: > Convert vf to itk -356: > Conversion complete. -356: plm_warp_native is complete. -356: Saving image... -356: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-img.nrrd -356: Saving vf... -356: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-vf.nrrd -356: Plastimatch 1.9.4 -356: Load: 0.06707 -356: Run: 0.224765 -356: Save: 0.254508 -356: Total: 0.546343 -356: Finished! -356: -356: STDERR: -356: Not an error -288/578 Test #356: plm-bsp-logfile ....................... Passed 1.25 sec -test 416 - Start 416: plm-reg-dv-itk-translation-stats - -416: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-dv-itk-translation-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -416: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -416: Test timeout computed to be: 1500 -309: RETVAL: 0 -309: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -309: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -309: Launching registration worker thread -309: Inside registration worker thread -309: Doing registration stage -309: [1] xf_in->m_type = 0, xf_out->m_type = 0 -309: Ready to start registration. -309: MSE [ 0] 18945.891 [ 0.230 secs] -309: MSE [ 1] 9778.825 [ 0.280 secs] -309: MSE [ 2] 3980.165 [ 0.276 secs] -309: MSE [ 3] 1233.515 [ 0.278 secs] -309: MSE [ 4] 374.936 [ 0.366 secs] -309: Done with registration. Writing output... -309: Deformation stats (out) -309: VF_MAX = 109.365 VF_AVG = 31.9237 -309: [2] xf_out->m_type = 8, xf_in->m_type = 0 -309: ** Registration worker thread finished. -309: Warping... -309: plm_warp_itk: xform_to_itk_vf -309: plm_warp_itk: convert_to_itk -309: plm_warp_itk: warping... -309: Saving image... -309: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-img.mha -309: Saving vf... -309: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd-vf.mha -309: Load: 0.097007 -309: Run: 1.48631 -309: Save: 0.0322411 -309: Total: 1.61556 -309: Finished! -309: -309: STDERR: -309: Not an error -571: RETVAL: 0 -571: STDOUT: -571: [PLAN] -571: patient : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha -571: target : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-2.mha -571: dose_out : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha -571: debug : 0 -571: dose norm : 100 -571: -571: [SETTINGS] -571: flavor: a ** -571: homo_approx: n ** -571: ray_step: 1 ** -571: aperture_out: ** -571: proj_dose_out: ** -571: proj_img_out: ** -571: range_comp_out: ** -571: sigma_out: ** -571: wed_out: ** -571: beam_weight: 1 ** -571: -571: [GEOMETRY & APERTURE] -571: source: 0 -2000 0 ** -571: isocenter: 0 0 0 ** -571: vup: 0 0 1 ** -571: offset: 1500 ** -571: ap_center in pixels: 20 20 ** -571: i_res: 41 41 ** -571: spacing: 3.75 3.75 ** -571: source_size: 0 ** -571: ap_file_in: ** -571: rc_file_in: ** -571: smearing: 5 ** -571: -571: [PEAK] -571: E0: P0 -571: spread: P0 -571: weight: P0 -571: -571: Start dose calculation Beam 1 -571: Plan_calc::compute_beam_dose(beam) entry -- -571: Setting RVRTS = 1 -571: FPD = 347.500001, BPD = 649.116731 -571: 41 41 302 -571: Setting RVRTS = 1 -571: FPD = 347.500001, BPD = 649.116731 -571: 41 41 302 -571: Setting RVRTS = 1 -571: FPD = 347.500001, BPD = 649.116731 -571: 41 41 302 -571: Priority 5. Target detected. -571: Compute target wepl_min_max... -571: Apply lateral smearing to the target... -571: Smearing = 5.000000, Smearing_ap = 3.750000 -571: Strel size = (1,1), (3,3) -571: 0 1 0 -571: 1 1 1 -571: 0 1 0 -571: Apply proximal and distal ... -571: Compute max wed... -571: Compute the aperture... -571: Max wed in the target is 117.554 mm. -571: Min wed in the target is 88.5523 mm. -571: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. -571: Min and max energies for treating the PTV: 109 MeV and 130 MeV. -571: -571: 22 Mono-energetic BP used: -571: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 -571: Optimization of the particle number map for any mono-energetic slice in progress... -571: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] -571: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U. -571: Dose normalized at the maximum to 1 x 100%. -571: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm -571: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha -571: Sigma: 0.000000 seconds -571: Calc: 5.927355 seconds -571: IO: 0.220667 seconds -571: Reformat: 0.000000 seconds -571: Misc: 0.026936 seconds -571: done. -571: -571: Total execution time : 6.257505 seconds. -571: -571: STDERR: -571: Not an error -289/578 Test #309: plm-reg-itk-demons-sym-logd ........... Passed 2.10 sec -test 425 - Start 425: plm-reg-process-a-stats - -425: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-process-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -425: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -425: Test timeout computed to be: 1500 -290/578 Test #571: proton-dose-6a ........................ Passed 6.75 sec -test 428 - Start 428: plm-reg-trans-a-stats - -428: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -428: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -428: Test timeout computed to be: 1500 -416: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -416: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-img.nrrd -416: EXPECTED_ERRNO is -425: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -425: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a.mha -425: EXPECTED_ERRNO is -386: RETVAL: 0 -386: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 -386: -386: STDERR: -386: Not an error -428: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -428: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a.mha -428: EXPECTED_ERRNO is -373: RETVAL: 0 -373: STDOUT: Min: -7.802 -7.802 -7.802 -373: Mean: -0.007 -0.007 -0.007 -373: Max: 7.755 7.755 7.755 -373: Mean abs: 0.234 0.234 0.234 -373: Ave len: 0.474 -373: Jacobian: MINJAC 0.419027 MAXJAC 1.04996 -373: Energy: MINDIL -0.755 MAXDIL 0.0517541 -373: MAXSTRAIN 0.0532 TOTSTRAIN 83.3434 -373: Second derivatives: MINSECDER 2.4e-12 MAXSECDER 0.0192 -373: AVESECDER 0.000198 INTSECDER 2.47e+04 -373: Max second derivative at: (20 16 20) -373: -373: STDERR: -373: Not an error -349: RETVAL: 0 -349: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -349: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -349: Loading fixed image [1]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-1.mha -349: Loading moving image [1]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-2.mha -349: Launching registration worker thread -349: Inside registration worker thread -349: Doing registration stage -349: [1] xf_in->m_type = 0, xf_out->m_type = 0 -349: RESAMPLE 1 1: (2 2 2), (2 2 2) -349: RESAMPLE 1 1: (2 2 2), (2 2 2) -349: volume_calc_grad_mag complete. -349: volume_calc_grad_mag complete. -349: volume_calc_grad complete. -349: RESAMPLE 1 1: (2 2 2), (2 2 2) -349: RESAMPLE 1 1: (2 2 2), (2 2 2) -349: volume_calc_grad complete. -349: bspline_xform_initialize -349: rdims = (2,2,2) -349: vox_per_rgn = (11,11,11) -349: cdims = (5 5 5) -349: Algorithm flavor = c -349: Threading = 0 -349: >> Checking JH allocation -349: >> Performing JH allocation -349: BSPLINE PARMS -349: max_its = 5 -349: max_feval = 5 -349: BSPLINE XFORM HEADER -349: vox_per_rgn = 11 11 11 -349: roi_offset = 0 0 0 -349: roi_dim = 19 19 19 -349: img_dc = 1 0 0 0 1 0 0 0 1 -349: BST METRICS -349: MET 110100 GM 0.100000 -349: MET 110100 MI 100.000000 -349: >> Performing JH initialization -349: Setting nmax, mmax = 375 21 -349: >>> START -349: This problem is unconstrained. -349: [ 0, 0] SCORE -23.086 NV 6859 GM 11.933 GN 2.8 [ 0.048 s ] -349: GM 172.276 MI -0.4031359 CMIN 0.01 CAVG 0.01 CMAX 0.01 -349: LSD 0.00 -349: [ 0, 1] SCORE -21.366 NV 6859 GM -20.848 GN 4.05 [ 0.039 s ] -349: GM 172.158 MI -0.3858200 CMIN -0.49 CAVG -0.00 CMAX 0.08 -349: LSD 1.00 -349: [ 0, 2] SCORE -22.915 NV 6859 GM -12.881 GN 2.54 [ 0.048 s ] -349: GM 172.298 MI -0.4014443 CMIN -0.08 CAVG 0.01 CMAX 0.02 -349: LSD 0.18 -349: [ 0, 3] SCORE -23.222 NV 6859 GM -1.121 GN 1.07 [ 0.076 s ] -349: GM 172.313 MI -0.4045370 CMIN -0.01 CAVG 0.01 CMAX 0.01 -349: LSD 0.05 -349: [ 1, 4] SCORE -23.229 NV 6859 GM 16.621 GN 3.63 [ 0.049 s ] -349: GM 172.348 MI -0.4046354 CMIN -0.01 CAVG 0.01 CMAX 0.01 -349: LSD 0.01 -349: [ 2, 5] SCORE -22.889 NV 6859 GM -16.998 GN 4.96 [ 0.034 s ] -349: GM 172.750 MI -0.4016393 CMIN -0.14 CAVG 0.01 CMAX 0.04 -349: LSD 0.20 -349: [2] xf_out->m_type = 9, xf_in->m_type = 0 -349: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -349: bspline_xform_initialize -349: rdims = (2,2,2) -349: vox_per_rgn = (22,22,22) -349: cdims = (5 5 5) -349: ** Registration worker thread finished. -349: Writing transformation ... -349: Warping... -349: Running: plm_warp_native -349: Converting input image... -349: Converting xform... -349: bspline_xform_initialize -349: rdims = (2,2,2) -349: vox_per_rgn = (22,22,22) -349: cdims = (5 5 5) -349: Creating output vf... -349: Creating output volume... -349: Running native warper... -349: bspline_warp complete. -349: Back convert to original type... -349: > Convert vf to itk -349: > Conversion complete. -349: plm_warp_native is complete. -349: Saving image... -349: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-img.mha -349: Saving vf... -349: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-sm-multi-a-vf.mha -349: Load: 0.208013 -349: Run: 0.377898 -349: Save: 0.183838 -349: Total: 0.769749 -349: Finished! -349: -349: STDERR: -349: Not an error -291/578 Test #386: plm-bsp-landmark-d-stats .............. Passed 0.59 sec -test 431 - Start 431: plm-reg-trans-b-stats - -431: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -431: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -431: Test timeout computed to be: 1500 -395: RETVAL: 0 -395: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 -395: -395: STDERR: -292/578 Test #349: plm-bsp-sm-multi-a .................... Passed 1.43 sec -293/578 Test #373: plm-bsp-regularize-analytic-stats ..... Passed 0.94 sec -test 434 - Start 434: plm-reg-trans-mi-a-stats - -434: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-trans-mi-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -434: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -434: Test timeout computed to be: 1500 -test 437 - Start 437: plm-reg-autores-a-stats - -437: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -437: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -437: Test timeout computed to be: 1500 -395: Not an error -376: RETVAL: 0 -376: STDOUT: Min: -7.243 -7.243 -7.243 -376: Mean: -0.004 -0.004 -0.004 -376: Max: 7.465 7.465 7.465 -376: Mean abs: 0.231 0.231 0.231 -376: Ave len: 0.460 -376: Jacobian: MINJAC 0.443734 MAXJAC 1.03502 -376: Energy: MINDIL -0.712 MAXDIL 0.0370853 -376: MAXSTRAIN 0.0397 TOTSTRAIN 73.6175 -376: Second derivatives: MINSECDER 9.85e-12 MAXSECDER 0.0182 -376: AVESECDER 0.00018 INTSECDER 2.24e+04 -376: Max second derivative at: (20 20 16) -376: -376: STDERR: -376: Not an error -294/578 Test #376: plm-bsp-regularize-numeric-stats ...... Passed 0.94 sec -295/578 Test #395: plm-bsp-dcos-b-stats .................. Passed 0.50 sec -test 440 - Start 440: plm-reg-autores-b-stats - -440: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-autores-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -440: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -440: Test timeout computed to be: 1500 -test 446 - Start 446: plm-compose-a-stats - -446: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -446: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -446: Test timeout computed to be: 1500 -434: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -434: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a.mha -434: EXPECTED_ERRNO is -431: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -431: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b.mha -431: EXPECTED_ERRNO is -437: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -437: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a.mha -437: EXPECTED_ERRNO is -440: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -440: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b.mha -440: EXPECTED_ERRNO is -446: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -446: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha -446: EXPECTED_ERRNO is -383: RETVAL: 0 -383: STDOUT: MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872 -383: -383: STDERR: -383: Not an error -389: RETVAL: 0 -389: STDOUT: MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872 -389: -389: STDERR: -389: Not an error -296/578 Test #383: plm-bsp-landmark-c-stats .............. Passed 0.85 sec -test 450 - Start 450: plm-compose-b-stats - -450: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -450: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -450: Test timeout computed to be: 1500 -297/578 Test #389: plm-bsp-landmark-e-stats .............. Passed 0.72 sec -test 454 - Start 454: plm-compose-c-stats - -454: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-compose-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -454: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -454: Test timeout computed to be: 1500 -401: RETVAL: 0 -401: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 -401: -401: STDERR: -401: Not an error -298/578 Test #401: plm-bsp-dcos-d-stats .................. Passed 0.59 sec -test 457 - Start 457: plm-resample-a-stats - -457: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -457: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -457: Test timeout computed to be: 1500 -398: RETVAL: 0 -398: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 -398: -398: STDERR: -398: Not an error -299/578 Test #398: plm-bsp-dcos-c-stats .................. Passed 0.64 sec -test 460 - Start 460: plm-resample-b-stats - -460: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -460: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -460: Test timeout computed to be: 1500 -368: RETVAL: 0 -368: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -368: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -368: Launching registration worker thread -368: Inside registration worker thread -368: Doing registration stage -368: [1] xf_in->m_type = 0, xf_out->m_type = 0 -368: RESAMPLE 1 1: (2 2 2), (2 2 2) -368: RESAMPLE 1 1: (2 2 2), (2 2 2) -368: volume_calc_grad complete. -368: bspline_xform_initialize -368: Warning: vox_per_rgn was less than 4. -368: Warning: vox_per_rgn was less than 4. -368: Warning: vox_per_rgn was less than 4. -368: rdims = (5,5,5) -368: vox_per_rgn = (4,4,4) -368: cdims = (8 8 8) -368: Algorithm flavor = g -368: Threading = 0 -368: >> Checking JH allocation -368: BSPLINE PARMS -368: max_its = 5 -368: max_feval = 5 -368: BSPLINE XFORM HEADER -368: vox_per_rgn = 4 4 4 -368: roi_offset = 0 0 0 -368: roi_dim = 19 19 19 -368: img_dc = 1 0 0 0 1 0 0 0 1 -368: BST METRICS -368: MET 110100 MSE 1.000000 -368: Setting nmax, mmax = 1536 41 -368: >>> START -368: This problem is unconstrained. -368: [ 0, 0] MSE 1339.481 NV 6859 GM 84.834 GN 23.1 [ 0.074 s ] -368: CMIN 0.00 CAVG 0.00 CMAX 0.00 -368: LSD 0.00 -368: [ 0, 1] MSE 1311.345 NV 6859 GM 83.820 GN 22.8 [ 0.024 s ] -368: CMIN -0.60 CAVG -0.00 CMAX 0.08 -368: LSD 1.00 -368: [ 0, 2] MSE 1202.580 NV 6859 GM 79.773 GN 21.8 [ 0.024 s ] -368: CMIN -2.99 CAVG -0.01 CMAX 0.42 -368: LSD 5.00 -368: [ 0, 3] MSE 827.300 NV 6859 GM 63.686 GN 17.5 [ 0.048 s ] -368: CMIN -12.56 CAVG -0.05 CMAX 1.74 -368: LSD 21.00 -368: [ 1, 4] MSE 213.043 NV 6859 GM -16.873 GN 5.84 [ 0.039 s ] -368: CMIN -54.37 CAVG -0.20 CMAX 6.52 -368: LSD 67.10 -368: [ 2, 5] MSE 175.936 NV 6859 GM -0.450 GN 2.34 [ 0.048 s ] -368: CMIN -51.91 CAVG -0.18 CMAX 5.91 -368: LSD 13.48 -368: [2] xf_out->m_type = 9, xf_in->m_type = 0 -368: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -368: bspline_xform_initialize -368: rdims = (5,5,5) -368: vox_per_rgn = (8,8,8) -368: cdims = (8 8 8) -368: ** Registration worker thread finished. -368: Writing transformation ... -368: Warping... -368: Running: plm_warp_native -368: Converting input image... -368: Converting xform... -368: bspline_xform_initialize -368: rdims = (5,5,5) -368: vox_per_rgn = (8,8,8) -368: cdims = (8 8 8) -368: Creating output vf... -368: Creating output volume... -368: Running native warper... -368: bspline_warp complete. -368: Back convert to original type... -368: > Convert vf to itk -368: > Conversion complete. -368: plm_warp_native is complete. -368: Saving image... -368: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-img.mha -368: Saving vf... -368: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd -368: Load: 0.137129 -368: Run: 0.296019 -368: Save: 0.173631 -368: Total: 0.606779 -368: Finished! -368: -368: STDERR: -368: Not an error -450: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -300/578 Test #368: plm-bsp-rect .......................... Passed 1.18 sec -test 463 - Start 463: plm-resample-c-stats - -463: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-resample-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -463: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -463: Test timeout computed to be: 1500 -450: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha -450: EXPECTED_ERRNO is -457: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -457: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a.mha -457: EXPECTED_ERRNO is -454: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -454: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha -454: EXPECTED_ERRNO is -392: RETVAL: 0 -392: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 -392: -392: STDERR: -392: Not an error -301/578 Test #392: plm-bsp-dcos-a-stats .................. Passed 0.73 sec -test 466 - Start 466: plm-scale-a-stats - -466: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -466: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -466: Test timeout computed to be: 1500 -460: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -460: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b.mha -460: EXPECTED_ERRNO is -407: RETVAL: 0 -407: STDOUT: MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872 -407: -407: STDERR: -407: Not an error -413: RETVAL: 0 -413: STDOUT: MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872 -413: -413: STDERR: -404: RETVAL: 0 -404: STDOUT: MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872 -404: -404: STDERR: -466: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -466: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a.nrrd -466: EXPECTED_ERRNO is -302/578 Test #407: plm-bsp-dcos-f-stats .................. Passed 0.54 sec -test 469 - Start 469: plm-scale-vf-a-stats - -469: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-scale-vf-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -469: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -469: Test timeout computed to be: 1500 -463: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -463: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-vf.mha -463: EXPECTED_ERRNO is -404: Not an error -413: Not an error -303/578 Test #404: plm-bsp-dcos-e-stats .................. Passed 0.62 sec -test 471 - Start 471: plm-sift-a - -471: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-sift-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=sift;--output-ps-1;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -471: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -471: Test timeout computed to be: 1500 -469: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -469: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a.nrrd -469: EXPECTED_ERRNO is -304/578 Test #413: plm-reg-multi-b-stats ................. Passed 0.52 sec -test 475 - Start 475: plm-thumbnail-a-stats - -475: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -475: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -475: Test timeout computed to be: 1500 -471: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -471: PARMS is sift;--output-ps-1;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-1.fcsv;--output-ps-2;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-ps-2.fcsv;--output-match-1;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-1.fcsv;--output-match-2;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-sift-a-match-2.fcsv;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-1.mha;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/lung-2.mha -471: EXPECTED_ERRNO is -475: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -475: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a.png -475: EXPECTED_ERRNO is -416: RETVAL: 0 -416: STDOUT: MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872 -416: -416: STDERR: -416: Not an error -305/578 Test #416: plm-reg-dv-itk-translation-stats ...... Passed 0.52 sec -test 478 - Start 478: plm-thumbnail-b-stats - -478: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -478: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -478: Test timeout computed to be: 1500 -440: RETVAL: 0 -440: STDOUT: MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872 -440: -440: STDERR: -440: Not an error -306/578 Test #440: plm-reg-autores-b-stats ............... Passed 0.41 sec -test 481 - Start 481: plm-thumbnail-c-stats - -481: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-thumbnail-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -481: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -481: Test timeout computed to be: 1500 -425: RETVAL: 0 -425: STDOUT: MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872 -425: -425: STDERR: -425: Not an error -428: RETVAL: 0 -428: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 -428: -428: STDERR: -428: Not an error -478: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -478: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b.png -478: EXPECTED_ERRNO is -307/578 Test #425: plm-reg-process-a-stats ............... Passed 0.56 sec -test 484 - Start 484: plm-intersect-stats - -484: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-intersect-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -484: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -484: Test timeout computed to be: 1500 -481: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -481: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c.png -481: EXPECTED_ERRNO is -410: RETVAL: 0 -410: STDOUT: Min: -20.189 -0.190 -0.190 -410: Mean: -20.000 -0.000 -0.000 -410: Max: -19.810 0.190 0.190 -410: Mean abs: 20.000 0.000 0.000 -410: Ave len: 20.000 -410: Jacobian: MINJAC 0.978516 MAXJAC 1.02157 -410: Energy: MINDIL -0.0216 MAXDIL 0.0215666 -410: MAXSTRAIN 0.0221 TOTSTRAIN 0.0501571 -410: Second derivatives: MINSECDER 0 MAXSECDER 0.00749 -410: AVESECDER 1.12e-05 INTSECDER 1.4e+03 -410: Max second derivative at: (18 20 16) -410: -410: STDERR: -410: Not an error -308/578 Test #428: plm-reg-trans-a-stats ................. Passed 0.56 sec -test 487 - Start 487: plm-union-stats - -487: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-union-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -487: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -487: Test timeout computed to be: 1500 -309/578 Test #410: plm-reg-multi-a-stats ................. Passed 0.75 sec -test 490 - Start 490: plm-threshold-a-stats - -490: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -490: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -490: Test timeout computed to be: 1500 -446: RETVAL: 0 -446: STDOUT: Min: 0.000 -1.573 -1.573 -446: Mean: 13.794 -0.035 -0.034 -446: Max: 20.615 1.329 1.329 -446: Mean abs: 13.794 0.281 0.281 -446: Ave len: 13.805 -446: Jacobian: MINJAC -6.27693 MAXJAC 1.08247 -446: Energy: MINDIL -6.41 MAXDIL 0.0798482 -446: MAXSTRAIN 14.2 TOTSTRAIN 28436.8 -446: Second derivatives: MINSECDER 0 MAXSECDER 165 -446: AVESECDER 6.5 INTSECDER 8.13e+05 -446: Max second derivative at: (30 18 18) -446: -446: STDERR: -446: Not an error -484: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -484: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect.mha -484: EXPECTED_ERRNO is -310/578 Test #446: plm-compose-a-stats ................... Passed 0.50 sec -test 493 - Start 493: plm-threshold-b-stats - -493: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-b-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -493: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -493: Test timeout computed to be: 1500 -487: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -487: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union.mha -487: EXPECTED_ERRNO is -565: RETVAL: 0 -565: STDOUT: -565: [PLAN] -565: patient : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha -565: target : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/ptv-1.mha -565: dose_out : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha -565: debug : 0 -565: dose norm : 100 -565: -565: [SETTINGS] -565: flavor: a ** -565: homo_approx: n ** -565: ray_step: 1 ** -565: aperture_out: ** -565: proj_dose_out: ** -565: proj_img_out: ** -565: range_comp_out: ** -565: sigma_out: ** -565: wed_out: ** -565: beam_weight: 1 ** -565: -565: [GEOMETRY & APERTURE] -565: source: 0 -2000 0 ** -565: isocenter: 0 0 0 ** -565: vup: 0 0 1 ** -565: offset: 1500 ** -565: ap_center in pixels: 20 20 ** -565: i_res: 41 41 ** -565: spacing: 3.75 3.75 ** -565: source_size: 0 ** -565: ap_file_in: ** -565: rc_file_in: ** -565: smearing: 5 ** -565: -565: [PEAK] -565: E0: P0 -565: spread: P0 -565: weight: P0 -565: -565: Start dose calculation Beam 1 -565: Plan_calc::compute_beam_dose(beam) entry -- -565: Setting RVRTS = 1 -565: FPD = 347.500001, BPD = 649.116731 -565: 41 41 302 -565: Setting RVRTS = 1 -565: FPD = 347.500001, BPD = 649.116731 -565: 41 41 302 -565: Setting RVRTS = 1 -565: FPD = 347.500001, BPD = 649.116731 -565: 41 41 302 -565: Priority 5. Target detected. -565: Compute target wepl_min_max... -565: Apply lateral smearing to the target... -565: Smearing = 5.000000, Smearing_ap = 3.750000 -565: Strel size = (1,1), (3,3) -565: 0 1 0 -565: 1 1 1 -565: 0 1 0 -565: Apply proximal and distal ... -565: Compute max wed... -565: Compute the aperture... -565: Max wed in the target is 117.554 mm. -565: Min wed in the target is 88.5523 mm. -565: Min and max depths in the PTV (target + margins): 88.5523 mm and 117.554 mm. -565: Min and max energies for treating the PTV: 109 MeV and 130 MeV. -565: -565: 22 Mono-energetic BP used: -565: 130 129 128 127 126 125 124 123 122 121 120 119 118 117 116 115 114 113 112 111 110 109 -565: Optimization of the particle number map for any mono-energetic slice in progress... -565: Adding peak to sobp (130.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (129.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (128.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (127.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (126.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (125.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (124.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (123.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (122.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (121.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (120.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (119.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (118.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (117.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (116.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (115.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (114.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (113.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (112.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (111.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (110.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Adding peak to sobp (109.000000, 1.000000, 1.000000) [0.010000, 140.000000] -565: Raw dose at the maximum (-15, 15, -10) : 1.01597 A.U. -565: Dose normalized at the maximum to 1 x 100%. -565: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm -565: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha -565: Sigma: 0.000000 seconds -565: Calc: 6.747804 seconds -565: IO: 0.175049 seconds -565: Reformat: 0.000000 seconds -565: Misc: 0.026719 seconds -565: done. -565: -565: Total execution time : 7.041346 seconds. -565: -565: STDERR: -565: Not an error -490: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -490: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a.mha -490: EXPECTED_ERRNO is -437: RETVAL: 0 -437: STDOUT: MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872 -437: -437: STDERR: -437: Not an error -311/578 Test #565: proton-dose-5a ........................ Passed 7.45 sec -test 496 - Start 496: plm-threshold-c-stats - -496: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-threshold-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -496: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -496: Test timeout computed to be: 1500 -431: RETVAL: 0 -431: STDOUT: MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872 -431: -431: STDERR: -431: Not an error -312/578 Test #431: plm-reg-trans-b-stats ................. Passed 0.62 sec -313/578 Test #437: plm-reg-autores-a-stats ............... Passed 0.60 sec -test 502 - Start 502: plm-warp-a-stats - -502: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -502: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -502: Test timeout computed to be: 1500 -test 505 - Start 505: plm-warp-b-stats-1 - -505: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -505: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -505: Test timeout computed to be: 1500 -493: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -493: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b.mha -493: EXPECTED_ERRNO is -434: RETVAL: 0 -434: STDOUT: MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872 -434: -434: STDERR: -434: Not an error -454: RETVAL: 0 -454: STDOUT: Min: 0.000 -2.171 -2.171 -454: Mean: 12.523 -0.008 -0.008 -454: Max: 21.615 1.811 1.811 -454: Mean abs: 12.523 0.418 0.418 -454: Ave len: 12.552 -454: Jacobian: MINJAC -6.97561 MAXJAC 1.2529 -454: Energy: MINDIL -6.7 MAXDIL 0.315048 -454: MAXSTRAIN 47 TOTSTRAIN 30590.5 -454: Second derivatives: MINSECDER 0 MAXSECDER 1.27e+03 -454: AVESECDER 7.37 INTSECDER 9.21e+05 -454: Max second derivative at: (30 20 27) -454: -454: STDERR: -454: Not an error -496: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -496: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c.mha -496: EXPECTED_ERRNO is -314/578 Test #434: plm-reg-trans-mi-a-stats .............. Passed 0.64 sec -315/578 Test #454: plm-compose-c-stats ................... Passed 0.51 sec -test 507 - Start 507: plm-warp-b-stats-2 - -507: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-b-stats-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -507: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -507: Test timeout computed to be: 1500 -test 510 - Start 510: plm-warp-c-stats +566: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +566: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha +566: EXPECTED_ERRNO is +312/578 Test #562: proton-dose-4d ........................ Passed 2.44 sec +test 563 + Start 563: proton-dose-4d-stats -510: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-c-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -510: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -510: Test timeout computed to be: 1500 -502: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -502: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-vf.mha -502: EXPECTED_ERRNO is -466: RETVAL: 0 -466: STDOUT: MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872 -466: -466: STDERR: -466: Not an error -505: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -505: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-vf.mha -505: EXPECTED_ERRNO is +563: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +563: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +563: Test timeout computed to be: 1500 450: RETVAL: 0 450: STDOUT: Min: 0.000 -1.573 -1.573 450: Mean: 13.794 -0.035 -0.034 @@ -18053,30 +18195,52 @@ 450: 450: STDERR: 450: Not an error -507: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -507: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b.mha -507: EXPECTED_ERRNO is -510: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -510: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c.mha -510: EXPECTED_ERRNO is -316/578 Test #466: plm-scale-a-stats ..................... Passed 0.46 sec -test 513 - Start 513: plm-warp-d-stats - -513: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -513: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -513: Test timeout computed to be: 1500 -317/578 Test #450: plm-compose-b-stats ................... Passed 0.58 sec -test 516 - Start 516: plm-warp-f-stats-1 +576: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +576: PARMS is wed;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a.txt +576: EXPECTED_ERRNO is +572: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +572: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha +572: EXPECTED_ERRNO is +313/578 Test #450: plm-compose-b-stats ................... Passed 0.31 sec +test 16 + Start 16: gauss-7 -516: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-f-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=header;plm-warp-f-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -516: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -516: Test timeout computed to be: 1500 -513: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -513: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d.mha -513: EXPECTED_ERRNO is +16: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-7" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +16: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +16: Test timeout computed to be: 1500 +457: RETVAL: 0 +457: STDOUT: MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859 +457: +457: STDERR: +454: RETVAL: 0 +16: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +16: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20 +16: EXPECTED_ERRNO is +454: STDOUT: Min: 0.000 -2.171 -2.171 +454: Mean: 12.523 -0.008 -0.008 +454: Max: 21.615 1.811 1.811 +454: Mean abs: 12.523 0.418 0.418 +454: Ave len: 12.552 +454: Jacobian: MINJAC -6.97561 MAXJAC 1.2529 +454: Energy: MINDIL -6.7 MAXDIL 0.315048 +454: MAXSTRAIN 47 TOTSTRAIN 30590.5 +454: Second derivatives: MINSECDER 0 MAXSECDER 1.27e+03 +454: AVESECDER 7.37 INTSECDER 9.21e+05 +454: Max second derivative at: (30 20 27) +454: +454: STDERR: +563: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +563: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha +563: EXPECTED_ERRNO is +460: RETVAL: 0 +460: STDOUT: MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000 +460: +460: STDERR: 463: RETVAL: 0 +475: RETVAL: 0 +475: STDOUT: MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256 +475: +475: STDERR: 463: STDOUT: Min: 1.219 -2.075 -2.075 463: Mean: 6.707 -0.405 -0.405 463: Max: 13.751 1.148 1.148 @@ -18090,50 +18254,18 @@ 463: Max second derivative at: (16 16 16) 463: 463: STDERR: -463: Not an error -318/578 Test #463: plm-resample-c-stats .................. Passed 0.55 sec -test 519 - Start 519: plm-warp-g-stats-1 - -519: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-g-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -519: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -519: Test timeout computed to be: 1500 -516: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -516: PARMS is header;plm-warp-f-img.nrrd -516: EXPECTED_ERRNO is -460: RETVAL: 0 -460: STDOUT: MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000 -460: -460: STDERR: -460: Not an error -519: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -519: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-img.nrrd -519: EXPECTED_ERRNO is -319/578 Test #460: plm-resample-b-stats .................. Passed 0.62 sec -test 522 - Start 522: plm-warp-h-stats-1 - -522: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-h-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-h-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -522: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -522: Test timeout computed to be: 1500 +466: RETVAL: 0 +466: STDOUT: MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872 +466: +466: STDERR: 481: RETVAL: 0 481: STDOUT: MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256 481: 481: STDERR: -481: Not an error -320/578 Test #481: plm-thumbnail-c-stats ................. Passed 0.40 sec -test 525 - Start 525: plm-warp-i-stats-1 - -525: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-i-stats-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;plm-warp-i-img.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -525: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -525: Test timeout computed to be: 1500 -522: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -522: PARMS is stats;plm-warp-h-img.nrrd -522: EXPECTED_ERRNO is -525: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -525: PARMS is stats;plm-warp-i-img.nrrd -525: EXPECTED_ERRNO is +478: RETVAL: 0 +478: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 256 +478: +478: STDERR: 469: RETVAL: 0 469: STDOUT: Min: 4.000 0.000 0.000 469: Mean: 4.000 0.000 0.000 @@ -18148,98 +18280,262 @@ 469: Max second derivative at: (1 1 1) 469: 469: STDERR: -457: RETVAL: 0 -457: STDOUT: MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859 -457: -457: STDERR: -469: Not an error -457: Not an error -321/578 Test #469: plm-scale-vf-a-stats .................. Passed 0.67 sec -test 528 - Start 528: plm-xf-convert-b - -528: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -528: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -528: Test timeout computed to be: 1500 -475: RETVAL: 0 -475: STDOUT: MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256 -475: -475: STDERR: -475: Not an error 484: RETVAL: 0 484: STDOUT: MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872 484: 484: STDERR: 484: Not an error -322/578 Test #457: plm-resample-a-stats .................. Passed 0.81 sec -323/578 Test #475: plm-thumbnail-a-stats ................. Passed 0.64 sec -test 532 - Start 532: plm-xf-convert-d-warp-1-stats +481: Not an error +454: Not an error +478: Not an error +463: Not an error +475: Not an error +314/578 Test #454: plm-compose-c-stats ................... Passed 0.43 sec +315/578 Test #481: plm-thumbnail-c-stats ................. Passed 0.30 sec +316/578 Test #484: plm-intersect-stats ................... Passed 0.29 sec +test 23 + Start 23: gw-lung-a -532: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -532: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -532: Test timeout computed to be: 1500 -test 535 - Start 535: plm-xf-convert-d-warp-2-stats +23: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +23: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +23: Test timeout computed to be: 1500 +test 24 + Start 24: gw-lung-b -535: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-d-warp-2-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -535: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -535: Test timeout computed to be: 1500 -324/578 Test #484: plm-intersect-stats ................... Passed 0.51 sec -test 541 - Start 541: plm-xf-convert-h-stats +24: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +24: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +24: Test timeout computed to be: 1500 +test 25 + Start 25: gw-lung-c -541: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-h-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -541: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -541: Test timeout computed to be: 1500 -532: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -532: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1.nrrd -532: EXPECTED_ERRNO is -487: RETVAL: 0 -487: STDOUT: MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872 -487: -487: STDERR: -487: Not an error -478: RETVAL: 0 -478: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 256 -478: -478: STDERR: -478: Not an error -541: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -541: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h.nrrd -541: EXPECTED_ERRNO is -325/578 Test #487: plm-union-stats ....................... Passed 0.55 sec -test 544 - Start 544: plm-xf-convert-i-stats +25: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +25: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +25: Test timeout computed to be: 1500 +490: RETVAL: 0 +490: STDOUT: MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872 +490: +490: STDERR: +490: Not an error +457: Not an error +469: Not an error +466: Not an error +460: Not an error +554: RETVAL: 0 +554: STDOUT: +554: STDERR: +554: Not an error +528: RETVAL: 0 +528: STDOUT: about to xform_convert +528: bspline_xform_initialize +528: Warning: vox_per_rgn was less than 4. +528: Warning: vox_per_rgn was less than 4. +528: Warning: vox_per_rgn was less than 4. +528: rdims = (1,1,1) +528: vox_per_rgn = (4,4,4) +528: cdims = (4 4 4) +528: did xform_convert +528: +528: STDERR: +528: Not an error +552: RETVAL: 0 +552: STDOUT: +552: STDERR: +552: Not an error +317/578 Test #457: plm-resample-a-stats .................. Passed 0.43 sec +318/578 Test #460: plm-resample-b-stats .................. Passed 0.35 sec +319/578 Test #463: plm-resample-c-stats .................. Passed 0.35 sec +320/578 Test #466: plm-scale-a-stats ..................... Passed 0.34 sec +321/578 Test #469: plm-scale-vf-a-stats .................. Passed 0.34 sec +322/578 Test #475: plm-thumbnail-a-stats ................. Passed 0.33 sec +323/578 Test #478: plm-thumbnail-b-stats ................. Passed 0.32 sec +324/578 Test #490: plm-threshold-a-stats ................. Passed 0.31 sec +325/578 Test #528: plm-xf-convert-b ...................... Passed 0.27 sec +326/578 Test #554: xf-invert-vrs-b ....................... Passed 0.24 sec +test 26 + Start 26: pat-1 -544: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-i-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -544: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -544: Test timeout computed to be: 1500 -535: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -535: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2.nrrd -535: EXPECTED_ERRNO is -326/578 Test #478: plm-thumbnail-b-stats ................. Passed 0.65 sec -test 547 - Start 547: xf-invert-vf-zero-1-stats +26: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=pat-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--pattern;rect;--dim;30 30 30;--background;-1000;--foreground;0;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;10 10 10;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/pat-1-dicom;--filenames-without-uids;--patient-id;PATIENT-ID;--patient-name;NAME^PATIENT;--series-description;Series Description Here" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +26: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +26: Test timeout computed to be: 1500 +test 35 + Start 35: rect-6 -547: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-zero-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -547: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -547: Test timeout computed to be: 1500 -528: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -528: PARMS is xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-a-vf.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output-type;bspline;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125;--grid-spacing;10 10 10 -528: EXPECTED_ERRNO is +35: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-6" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +35: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +35: Test timeout computed to be: 1500 +test 36 + Start 36: rect-7 + +36: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-7" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +36: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +36: Test timeout computed to be: 1500 +test 41 + Start 41: rect-10-roi-2 + +41: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +41: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +41: Test timeout computed to be: 1500 +test 50 + Start 50: rect-18 + +50: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-18" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +50: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +50: Test timeout computed to be: 1500 +test 60 + Start 60: rgc-1 + +60: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rgc-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +60: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +60: Test timeout computed to be: 1500 +test 69 + Start 69: xramp-1 + +69: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xramp-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +69: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +69: Test timeout computed to be: 1500 +test 70 + Start 70: yramp-1 + +70: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=yramp-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +70: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +70: Test timeout computed to be: 1500 +test 71 + Start 71: zramp-1 + +71: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=zramp-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +71: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +71: Test timeout computed to be: 1500 +test 76 + Start 76: vf-gaussian-1 + +76: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-gaussian-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +76: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +76: Test timeout computed to be: 1500 +327/578 Test #552: xf-invert-vrs-a ....................... Passed 0.29 sec +510: RETVAL: 0 +510: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 +510: +510: STDERR: +510: Not an error +557: RETVAL: 0 +557: STDOUT: MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000 +557: +557: STDERR: +557: Not an error +532: RETVAL: 0 +532: STDOUT: MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859 +532: +532: STDERR: +532: Not an error +23: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +23: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5 +23: EXPECTED_ERRNO is +560: RETVAL: 0 +560: STDOUT: MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000 +560: +560: STDERR: +560: Not an error +516: RETVAL: 0 +516: STDOUT: Type = float +516: Planes = 1 +516: Origin = -147.5140 -381.8964 -136.9799 +516: Size = 38 38 38 +516: Spacing = 13.1579 13.1579 13.1579 +516: Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138 +516: +516: STDERR: +516: Not an error +544: RETVAL: 0 +544: STDOUT: Min: 7.161 -0.245 -0.245 +544: Mean: 8.546 0.041 0.041 +544: Max: 9.698 0.313 0.313 +544: Mean abs: 8.546 0.144 0.144 +544: Ave len: 8.549 +544: Jacobian: MINJAC 0.996419 MAXJAC 1.00089 +544: Energy: MINDIL -0.00359 MAXDIL 0.00089729 +544: MAXSTRAIN 0.000899 TOTSTRAIN -0.0111365 +544: Second derivatives: MINSECDER 6.15e-05 MAXSECDER 8.87e-05 +544: AVESECDER 9.37e-06 INTSECDER 1.17e+03 +544: Max second derivative at: (1 1 1) +544: +544: STDERR: +544: Not an error +550: RETVAL: 0 +550: STDOUT: Min: -10.000 0.000 0.000 +550: Mean: -9.999 0.000 0.000 +550: Max: -9.963 0.000 0.000 +550: Mean abs: 9.999 0.000 0.000 +550: Ave len: 9.999 +550: Jacobian: MINJAC 0.998589 MAXJAC 1 +550: Energy: MINDIL -0.00141 MAXDIL 3.62396e-08 +550: MAXSTRAIN 3.62e-08 TOTSTRAIN -2.78625 +550: Second derivatives: MINSECDER 0 MAXSECDER 2.19e-06 +550: AVESECDER 5.23e-08 INTSECDER 6.54 +550: Max second derivative at: (2 1 1) +550: +550: STDERR: +522: RETVAL: 0 +522: STDOUT: MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872 +522: +522: STDERR: +522: Not an error +24: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +24: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0 +24: EXPECTED_ERRNO is 507: RETVAL: 0 507: STDOUT: MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872 507: 507: STDERR: -507: Not an error -327/578 Test #507: plm-warp-b-stats-2 .................... Passed 0.44 sec -test 550 - Start 550: xf-invert-vf-trans-1-stats - -550: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vf-trans-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -550: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -550: Test timeout computed to be: 1500 +547: RETVAL: 0 +547: STDOUT: Min: 0.000 0.000 0.000 +547: Mean: 0.000 0.000 0.000 +547: Max: 0.000 0.000 0.000 +547: Mean abs: 0.000 0.000 0.000 +547: Ave len: 0.000 +547: Jacobian: MINJAC 1 MAXJAC 1 +547: Energy: MINDIL 0 MAXDIL 0 +547: MAXSTRAIN 0 TOTSTRAIN 0 +547: Second derivatives: MINSECDER 0 MAXSECDER 0 +547: AVESECDER 0 INTSECDER 0 +547: Max second derivative at: (1 1 1) +547: +547: STDERR: +547: Not an error +513: RETVAL: 0 +513: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 +513: +513: STDERR: +496: RETVAL: 0 +496: STDOUT: MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872 +496: +496: STDERR: +496: Not an error +525: RETVAL: 0 +525: STDOUT: MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872 +525: +525: STDERR: +25: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +25: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5 +25: EXPECTED_ERRNO is +519: RETVAL: 0 +519: STDOUT: MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872 +519: +519: STDERR: +541: RETVAL: 0 +541: STDOUT: Min: 20.000 0.000 0.000 +541: Mean: 20.000 0.000 0.000 +541: Max: 20.000 0.000 0.000 +541: Mean abs: 20.000 0.000 0.000 +541: Ave len: 20.000 +541: Jacobian: MINJAC 1 MAXJAC 1 +541: Energy: MINDIL 0 MAXDIL 0 +541: MAXSTRAIN 0 TOTSTRAIN 0 +541: Second derivatives: MINSECDER 0 MAXSECDER 0 +541: AVESECDER 0 INTSECDER 0 +541: Max second derivative at: (1 1 1) +541: +541: STDERR: +541: Not an error 502: RETVAL: 0 502: STDOUT: Min: 0.875 -1.519 -1.519 502: Mean: 5.773 0.002 0.002 @@ -18254,32 +18550,16 @@ 502: Max second derivative at: (15 15 15) 502: 502: STDERR: -502: Not an error -493: RETVAL: 0 -493: STDOUT: MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872 -493: -493: STDERR: -493: Not an error -328/578 Test #493: plm-threshold-b-stats ................. Passed 0.57 sec -329/578 Test #502: plm-warp-a-stats ...................... Passed 0.50 sec -test 552 - Start 552: xf-invert-vrs-a - -552: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -552: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -552: Test timeout computed to be: 1500 -test 554 - Start 554: xf-invert-vrs-b - -554: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xf-invert-vrs-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -554: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -554: Test timeout computed to be: 1500 -547: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -547: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1.mha -547: EXPECTED_ERRNO is -544: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -544: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-vf.nrrd -544: EXPECTED_ERRNO is +16: RETVAL: 0 +16: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha +16: +16: STDERR: +16: Not an error +487: RETVAL: 0 +487: STDOUT: MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872 +487: +487: STDERR: +487: Not an error 505: RETVAL: 0 505: STDOUT: Min: 0.875 -1.519 -1.519 505: Mean: 5.773 0.002 0.002 @@ -18295,84 +18575,224 @@ 505: 505: STDERR: 505: Not an error -554: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -554: PARMS is xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-b.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm -554: EXPECTED_ERRNO is -510: RETVAL: 0 -510: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 -510: -510: STDERR: -510: Not an error -330/578 Test #505: plm-warp-b-stats-1 .................... Passed 0.54 sec -test 557 - Start 557: proton-dose-1-stats +493: RETVAL: 0 +493: STDOUT: MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872 +493: +493: STDERR: +493: Not an error +535: RETVAL: 0 +535: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 +535: +535: STDERR: +535: Not an error +111: RETVAL: 0 +111: STDOUT: Reconstructing... +111: Processing image 0 +111: Processing image 1 +111: Processing image 2 +111: Processing image 3 +111: Processing image 4 +111: Processing image 5 +111: Processing image 6 +111: Processing image 7 +111: Processing image 8 +111: Processing image 9 +111: Processing image 10 +111: Processing image 11 +111: Processing image 12 +111: Processing image 13 +111: Processing image 14 +111: Processing image 15 +111: Processing image 16 +111: Processing image 17 +111: Processing image 18 +111: Processing image 19 +111: I/O time (total) = 0.00208282 +111: I/O time (per image) = 0.000104141 +111: Filter time = 0 +111: Filter time (per image) = 0 +111: Backprojection time = 2.37512 +111: Backprojection time (per image) = 0.118756 +111: Writing output volume(s)... +111: done. +111: +111: +111: STDERR: +111: Not an error +26: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +26: PARMS is synth;--pattern;rect;--dim;30 30 30;--background;-1000;--foreground;0;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;10 10 10;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/pat-1-dicom;--filenames-without-uids;--patient-id;PATIENT-ID;--patient-name;NAME^PATIENT;--series-description;Series Description Here +26: EXPECTED_ERRNO is +35: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +35: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2 +35: EXPECTED_ERRNO is +36: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +36: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3 +36: EXPECTED_ERRNO is +41: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +41: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60 +41: EXPECTED_ERRNO is +328/578 Test #510: plm-warp-c-stats ...................... Passed 0.47 sec +329/578 Test #516: plm-warp-f-stats-1 .................... Passed 0.46 sec +330/578 Test #532: plm-xf-convert-d-warp-1-stats ......... Passed 0.45 sec +331/578 Test #544: plm-xf-convert-i-stats ................ Passed 0.43 sec +332/578 Test #557: proton-dose-1-stats ................... Passed 0.42 sec +333/578 Test #560: proton-dose-4a-stats .................. Passed 0.41 sec +test 78 + Start 78: vf-zero-check -557: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-1-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -557: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -557: Test timeout computed to be: 1500 -552: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -552: PARMS is xf-invert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm -552: EXPECTED_ERRNO is -550: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -550: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1.mha -550: EXPECTED_ERRNO is -496: RETVAL: 0 -496: STDOUT: MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872 -496: -496: STDERR: -496: Not an error -331/578 Test #496: plm-threshold-c-stats ................. Passed 0.59 sec -test 560 - Start 560: proton-dose-4a-stats +78: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +78: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +78: Test timeout computed to be: 1500 +test 80 + Start 80: vf-trans-1-check -560: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -560: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -560: Test timeout computed to be: 1500 -557: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -557: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1.mha -557: EXPECTED_ERRNO is -332/578 Test #510: plm-warp-c-stats ...................... Passed 0.55 sec -test 563 - Start 563: proton-dose-4d-stats +80: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +80: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +80: Test timeout computed to be: 1500 +test 82 + Start 82: vf-trans-2-check -563: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-4d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -563: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -563: Test timeout computed to be: 1500 -513: RETVAL: 0 -513: STDOUT: MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872 -513: -513: STDERR: -513: Not an error -490: RETVAL: 0 -490: STDOUT: MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872 -490: -490: STDERR: -490: Not an error -333/578 Test #490: plm-threshold-a-stats ................. Passed 0.73 sec -test 566 - Start 566: proton-dose-5a-stats +82: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt" "-DREGEX=Mean: *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +82: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +82: Test timeout computed to be: 1500 +test 84 + Start 84: vf-radial-1-check -566: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -566: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -566: Test timeout computed to be: 1500 -560: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -560: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a.mha -560: EXPECTED_ERRNO is -563: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -563: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d.mha -563: EXPECTED_ERRNO is -334/578 Test #513: plm-warp-d-stats ...................... Passed 0.56 sec -test 572 - Start 572: proton-dose-6a-stats +84: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=5.15" "-DUPPER_THRESH=5.16" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +84: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +84: Test timeout computed to be: 1500 +test 86 + Start 86: plm-compare-a-check -572: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-6a-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -572: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -572: Test timeout computed to be: 1500 -519: RETVAL: 0 -519: STDOUT: MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872 -519: -519: STDERR: +86: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=7.76" "-DUPPER_THRESH=7.78" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +86: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +86: Test timeout computed to be: 1500 +test 88 + Start 88: plm-compare-b-check + +88: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +88: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +88: Test timeout computed to be: 1500 +test 90 + Start 90: plm-compare-c-check + +90: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +90: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +90: Test timeout computed to be: 1500 +23: RETVAL: 0 +23: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha +23: +23: STDERR: +23: Not an error +550: Not an error +334/578 Test #550: xf-invert-vf-trans-1-stats ............ Passed 0.45 sec +335/578 Test #522: plm-warp-h-stats-1 .................... Passed 0.48 sec +24: RETVAL: 0 +24: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha +24: +24: STDERR: +24: Not an error +507: Not an error +336/578 Test #507: plm-warp-b-stats-2 .................... Passed 0.49 sec +337/578 Test #547: xf-invert-vf-zero-1-stats ............. Passed 0.45 sec +513: Not an error +338/578 Test #513: plm-warp-d-stats ...................... Passed 0.49 sec +339/578 Test #496: plm-threshold-c-stats ................. Passed 0.50 sec +525: Not an error +340/578 Test #525: plm-warp-i-stats-1 .................... Passed 0.48 sec 519: Not an error +341/578 Test #519: plm-warp-g-stats-1 .................... Passed 0.48 sec +342/578 Test #541: plm-xf-convert-h-stats ................ Passed 0.46 sec +502: Not an error +343/578 Test #502: plm-warp-a-stats ...................... Passed 0.50 sec +344/578 Test #16: gauss-7 ............................... Passed 0.38 sec +345/578 Test #487: plm-union-stats ....................... Passed 0.51 sec +346/578 Test #505: plm-warp-b-stats-1 .................... Passed 0.50 sec +347/578 Test #493: plm-threshold-b-stats ................. Passed 0.51 sec +348/578 Test #535: plm-xf-convert-d-warp-2-stats ......... Passed 0.47 sec +349/578 Test #111: fdk-cpu-d ............................. Passed 2.92 sec +35: RETVAL: 0 +35: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha +35: +35: STDERR: +35: Not an error +36: RETVAL: 0 +36: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha +36: +36: STDERR: +36: Not an error +41: RETVAL: 0 +41: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha +41: +41: STDERR: +41: Not an error +50: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +50: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20 +50: EXPECTED_ERRNO is +50: RETVAL: 0 +50: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha +50: +50: STDERR: +50: Not an error +60: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +60: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1 +60: EXPECTED_ERRNO is +60: RETVAL: 0 +60: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha +60: +60: STDERR: +60: Not an error +69: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +69: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38 +69: EXPECTED_ERRNO is +69: RETVAL: 0 +69: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha +69: +69: STDERR: +69: Not an error +70: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +70: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38 +70: EXPECTED_ERRNO is +70: RETVAL: 0 +70: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha +70: +70: STDERR: +70: Not an error +71: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +71: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38 +71: EXPECTED_ERRNO is +572: RETVAL: 0 +572: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 +572: +572: STDERR: +572: Not an error +350/578 Test #572: proton-dose-6a-stats .................. Passed 0.42 sec +76: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +76: PARMS is synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38 +76: EXPECTED_ERRNO is +76: RETVAL: 0 +76: STDOUT: Setting header +76: Origin = -243.4211 -243.4211 -243.4211 +76: Size = 38 38 38 +76: Spacing = 13.1579 13.1579 13.1579 +76: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +76: Header was set +76: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha +76: +76: STDERR: +76: Not an error +566: RETVAL: 0 +566: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 +566: +566: STDERR: +566: Not an error +351/578 Test #566: proton-dose-5a-stats .................. Passed 0.43 sec +563: RETVAL: 0 +563: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 +563: +563: STDERR: +563: Not an error +352/578 Test #563: proton-dose-4d-stats .................. Passed 0.39 sec 568: RETVAL: 0 568: STDOUT: 568: [PLAN] @@ -18673,496 +19093,49 @@ 568: Trying to write mebs in /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-pn.txt 568: Ap 41 41 568: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha -568: Sigma: 0.251091 seconds -568: Calc: 7.072468 seconds -568: IO: 0.224196 seconds -568: Reformat: 0.025478 seconds -568: Misc: 0.043765 seconds +568: Sigma: 0.171437 seconds +568: Calc: 2.042032 seconds +568: IO: 0.232179 seconds +568: Reformat: 0.014091 seconds +568: Misc: 0.014423 seconds 568: done. 568: -568: Total execution time : 7.617592 seconds. +568: Total execution time : 2.520618 seconds. 568: 568: STDERR: 568: Not an error -335/578 Test #519: plm-warp-g-stats-1 .................... Passed 0.54 sec -test 576 - Start 576: wed-a +80: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt +80: -- REGEX is Mean: *([-0-9.]*) +80: -- LOWER_THRESH is 10.000 +80: -- UPPER_THRESH is 10.000 +80: -- PARSED VALUE=|Mean: 10.000 0.000 0.000| +80: -- PARSED_VALUE=|10.000| +80: Not an error +353/578 Test #568: proton-dose-5d ........................ Passed 2.74 sec +354/578 Test #23: gw-lung-a ............................. Passed 0.23 sec +355/578 Test #24: gw-lung-b ............................. Passed 0.23 sec +356/578 Test #35: rect-6 ................................ Passed 0.20 sec +357/578 Test #41: rect-10-roi-2 ......................... Passed 0.18 sec +358/578 Test #50: rect-18 ............................... Passed 0.18 sec +359/578 Test #60: rgc-1 ................................. Passed 0.18 sec +test 112 + Start 112: fdk-cpu-d-stats -576: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=wed-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=wed;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -576: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -576: Test timeout computed to be: 1500 -336/578 Test #568: proton-dose-5d ........................ Passed 8.15 sec +112: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=fdk-cpu-d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +112: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +112: Test timeout computed to be: 1500 test 569 Start 569: proton-dose-5d-stats 569: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-5d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 569: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 569: Test timeout computed to be: 1500 -572: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -572: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a.mha -572: EXPECTED_ERRNO is -566: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -566: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a.mha -566: EXPECTED_ERRNO is -576: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -516: RETVAL: 0 -516: STDOUT: Type = float -516: Planes = 1 -516: Origin = -147.5140 -381.8964 -136.9799 -516: Size = 38 38 38 -516: Spacing = 13.1579 13.1579 13.1579 -516: Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138 -516: -516: STDERR: -516: Not an error -576: PARMS is wed;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a.txt -576: EXPECTED_ERRNO is -337/578 Test #516: plm-warp-f-stats-1 .................... Passed 0.66 sec test 574 Start 574: proton-dose-8d 574: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 574: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 574: Test timeout computed to be: 1500 -569: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -569: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha -569: EXPECTED_ERRNO is -528: RETVAL: 0 -528: STDOUT: about to xform_convert -528: bspline_xform_initialize -528: Warning: vox_per_rgn was less than 4. -528: Warning: vox_per_rgn was less than 4. -528: Warning: vox_per_rgn was less than 4. -528: rdims = (1,1,1) -528: vox_per_rgn = (4,4,4) -528: cdims = (4 4 4) -528: did xform_convert -528: -528: STDERR: -528: Not an error -574: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -574: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt -574: EXPECTED_ERRNO is -338/578 Test #528: plm-xf-convert-b ...................... Passed 0.50 sec -test 16 - Start 16: gauss-7 - -16: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gauss-7" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -16: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -16: Test timeout computed to be: 1500 -16: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -16: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha;--output-type;float;--pattern;gauss;--origin;-25 -25 -25;--dim;38 38 38;--volume-size;50 50 50;--background;-1000;--foreground;0;--gauss-center;10 0 0;--gauss-std;20 20 20 -16: EXPECTED_ERRNO is -535: RETVAL: 0 -535: STDOUT: MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872 -535: -535: STDERR: -535: Not an error -339/578 Test #535: plm-xf-convert-d-warp-2-stats ......... Passed 0.54 sec -test 23 - Start 23: gw-lung-a - -23: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -23: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -23: Test timeout computed to be: 1500 -547: RETVAL: 0 -547: STDOUT: Min: 0.000 0.000 0.000 -547: Mean: 0.000 0.000 0.000 -547: Max: 0.000 0.000 0.000 -547: Mean abs: 0.000 0.000 0.000 -547: Ave len: 0.000 -547: Jacobian: MINJAC 1 MAXJAC 1 -547: Energy: MINDIL 0 MAXDIL 0 -547: MAXSTRAIN 0 TOTSTRAIN 0 -547: Second derivatives: MINSECDER 0 MAXSECDER 0 -547: AVESECDER 0 INTSECDER 0 -547: Max second derivative at: (1 1 1) -547: -547: STDERR: -547: Not an error -340/578 Test #547: xf-invert-vf-zero-1-stats ............. Passed 0.48 sec -test 24 - Start 24: gw-lung-b - -24: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -24: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -24: Test timeout computed to be: 1500 -522: RETVAL: 0 -522: STDOUT: MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872 -522: -522: STDERR: -23: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -23: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha;--pattern;lung;--lung-tumor-pos;-5 -23: EXPECTED_ERRNO is -522: Not an error -341/578 Test #522: plm-warp-h-stats-1 .................... Passed 0.78 sec -test 25 - Start 25: gw-lung-c - -25: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=gw-lung-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -25: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -25: Test timeout computed to be: 1500 -532: RETVAL: 0 -532: STDOUT: MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859 -532: -532: STDERR: -532: Not an error -525: RETVAL: 0 -525: STDOUT: MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872 -525: -525: STDERR: -342/578 Test #532: plm-xf-convert-d-warp-1-stats ......... Passed 0.63 sec -test 26 - Start 26: pat-1 - -26: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=pat-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--pattern;rect;--dim;30 30 30;--background;-1000;--foreground;0;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;10 10 10;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/pat-1-dicom;--filenames-without-uids;--patient-id;PATIENT-ID;--patient-name;NAME^PATIENT;--series-description;Series Description Here" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -26: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -26: Test timeout computed to be: 1500 -525: Not an error -554: RETVAL: 0 -554: STDOUT: -554: STDERR: -554: Not an error -24: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -24: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha;--pattern;lung;--lung-tumor-pos;0 -24: EXPECTED_ERRNO is -343/578 Test #525: plm-warp-i-stats-1 .................... Passed 0.77 sec -test 35 - Start 35: rect-6 - -35: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-6" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -35: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -35: Test timeout computed to be: 1500 -541: RETVAL: 0 -541: STDOUT: Min: 20.000 0.000 0.000 -541: Mean: 20.000 0.000 0.000 -541: Max: 20.000 0.000 0.000 -541: Mean abs: 20.000 0.000 0.000 -541: Ave len: 20.000 -541: Jacobian: MINJAC 1 MAXJAC 1 -541: Energy: MINDIL 0 MAXDIL 0 -541: MAXSTRAIN 0 TOTSTRAIN 0 -541: Second derivatives: MINSECDER 0 MAXSECDER 0 -541: AVESECDER 0 INTSECDER 0 -541: Max second derivative at: (1 1 1) -541: -541: STDERR: -541: Not an error -344/578 Test #541: plm-xf-convert-h-stats ................ Passed 0.63 sec -345/578 Test #554: xf-invert-vrs-b ....................... Passed 0.50 sec -test 36 - Start 36: rect-7 - -36: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-7" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -36: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -36: Test timeout computed to be: 1500 -test 41 - Start 41: rect-10-roi-2 - -41: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-10-roi-2" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -41: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -41: Test timeout computed to be: 1500 -25: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -25: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha;--pattern;lung;--lung-tumor-pos;5 -25: EXPECTED_ERRNO is -26: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -26: PARMS is synth;--pattern;rect;--dim;30 30 30;--background;-1000;--foreground;0;--rect-size;20 20 20;--origin;-150 -150 -150;--spacing;10 10 10;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/pat-1-dicom;--filenames-without-uids;--patient-id;PATIENT-ID;--patient-name;NAME^PATIENT;--series-description;Series Description Here -26: EXPECTED_ERRNO is -35: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -35: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;0 -300 -200;--direction-cosines;rotated-2 -35: EXPECTED_ERRNO is -36: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -36: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha;--output-type;float;--pattern;rect;--dim;38 38 38;--background;-1000;--foreground;0;--rect-size;-50 50 -50 50 -50 50;--origin;100 300 -100;--direction-cosines;rotated-3 -36: EXPECTED_ERRNO is -41: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -41: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha;--output-type;uchar;--pattern;rect;--dim;38 38 38;--background;0;--foreground;1;--rect-size;-220 60 -60 60 -60 60 -41: EXPECTED_ERRNO is -560: RETVAL: 0 -560: STDOUT: MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000 -560: -560: STDERR: -560: Not an error -550: RETVAL: 0 -550: STDOUT: Min: -10.000 0.000 0.000 -550: Mean: -9.999 0.000 0.000 -550: Max: -9.963 0.000 0.000 -550: Mean abs: 9.999 0.000 0.000 -550: Ave len: 9.999 -550: Jacobian: MINJAC 0.998589 MAXJAC 1 -550: Energy: MINDIL -0.00141 MAXDIL 3.62396e-08 -550: MAXSTRAIN 3.62e-08 TOTSTRAIN -2.78625 -550: Second derivatives: MINSECDER 0 MAXSECDER 2.19e-06 -550: AVESECDER 5.23e-08 INTSECDER 6.54 -550: Max second derivative at: (2 1 1) -550: -550: STDERR: -550: Not an error -552: RETVAL: 0 -552: STDOUT: -552: STDERR: -552: Not an error -346/578 Test #550: xf-invert-vf-trans-1-stats ............ Passed 0.64 sec -test 50 - Start 50: rect-18 - -50: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rect-18" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -50: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -50: Test timeout computed to be: 1500 -544: RETVAL: 0 -544: STDOUT: Min: 7.161 -0.245 -0.245 -544: Mean: 8.546 0.041 0.041 -544: Max: 9.698 0.313 0.313 -544: Mean abs: 8.546 0.144 0.144 -544: Ave len: 8.549 -544: Jacobian: MINJAC 0.996419 MAXJAC 1.00089 -544: Energy: MINDIL -0.00359 MAXDIL 0.00089729 -544: MAXSTRAIN 0.000899 TOTSTRAIN -0.0111365 -544: Second derivatives: MINSECDER 6.15e-05 MAXSECDER 8.87e-05 -544: AVESECDER 9.37e-06 INTSECDER 1.17e+03 -544: Max second derivative at: (1 1 1) -544: -544: STDERR: -347/578 Test #552: xf-invert-vrs-a ....................... Passed 0.64 sec -348/578 Test #560: proton-dose-4a-stats .................. Passed 0.57 sec -test 60 - Start 60: rgc-1 - -60: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=rgc-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -60: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -60: Test timeout computed to be: 1500 -test 69 - Start 69: xramp-1 - -69: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=xramp-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -69: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -69: Test timeout computed to be: 1500 -544: Not an error -50: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -50: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha;--pattern;rect;--dim;15 15 15;--background;-1000;--foreground;0;--rect-size;-100 100 -100 100 -100 100;--origin;-150 -150 -150;--spacing;20 20 20 -50: EXPECTED_ERRNO is -349/578 Test #544: plm-xf-convert-i-stats ................ Passed 0.74 sec -test 70 - Start 70: yramp-1 - -70: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=yramp-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -70: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -70: Test timeout computed to be: 1500 -563: RETVAL: 0 -563: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 -563: -563: STDERR: -563: Not an error -350/578 Test #563: proton-dose-4d-stats .................. Passed 0.60 sec -test 71 - Start 71: zramp-1 - -71: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=zramp-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -71: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -71: Test timeout computed to be: 1500 -60: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -60: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha;--output-type;float;--pattern;rect;--dim;10 10 1;--background;0;--foreground;30;--rect-size;0 10 0 5 0 0;--origin;0 0 0;--spacing;1 1 1 -60: EXPECTED_ERRNO is -71: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -71: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha;--output-type;float;--pattern;zramp;--dim;38 38 38 -71: EXPECTED_ERRNO is -569: RETVAL: 0 -569: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 -569: -569: STDERR: -569: Not an error -69: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -69: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha;--output-type;float;--pattern;xramp;--dim;38 38 38 -69: EXPECTED_ERRNO is -557: RETVAL: 0 -557: STDOUT: MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000 -557: -557: STDERR: -557: Not an error -351/578 Test #569: proton-dose-5d-stats .................. Passed 0.57 sec -test 76 - Start 76: vf-gaussian-1 - -76: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=vf-gaussian-1" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -76: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -76: Test timeout computed to be: 1500 -70: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -70: PARMS is synth;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha;--output-type;float;--pattern;yramp;--dim;38 38 38 -70: EXPECTED_ERRNO is -352/578 Test #557: proton-dose-1-stats ................... Passed 0.73 sec -test 78 - Start 78: vf-zero-check - -78: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -78: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -78: Test timeout computed to be: 1500 -566: RETVAL: 0 -566: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 -566: -566: STDERR: -566: Not an error -353/578 Test #566: proton-dose-5a-stats .................. Passed 0.67 sec -test 80 - Start 80: vf-trans-1-check - -80: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -80: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -80: Test timeout computed to be: 1500 -572: RETVAL: 0 -572: STDOUT: MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000 -572: -572: STDERR: -572: Not an error -76: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -76: PARMS is synth-vf;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha;--xf-gauss;--gauss-center;0 0 0;--gauss-mag;10 20 0;--gauss-std;100 100 100;--dim;38 38 38 -76: EXPECTED_ERRNO is -354/578 Test #572: proton-dose-6a-stats .................. Passed 0.67 sec -test 82 - Start 82: vf-trans-2-check - -82: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt" "-DREGEX=Mean: *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=10.000" "-DUPPER_THRESH=10.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -82: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -82: Test timeout computed to be: 1500 -82: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt -82: -- REGEX is Mean: *[-0-9.]* *([-0-9.]*) -82: -- LOWER_THRESH is 10.000 -82: -- UPPER_THRESH is 10.000 -82: -- PARSED VALUE=|Mean: 0.000 10.000 0.000| -82: -- PARSED_VALUE=|10.000| -82: Not an error -78: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt -78: -- REGEX is Mean abs: *([-0-9.]*) -78: -- LOWER_THRESH is 0.000 -78: -- UPPER_THRESH is 0.000 -78: -- PARSED VALUE=|Mean abs: 0.000 0.000 0.000| -78: -- PARSED_VALUE=|0.000| -78: Not an error -355/578 Test #82: vf-trans-2-check ...................... Passed 0.04 sec -test 84 - Start 84: vf-radial-1-check - -84: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=5.15" "-DUPPER_THRESH=5.16" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -84: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -84: Test timeout computed to be: 1500 -80: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-1-stats.stdout.txt -80: -- REGEX is Mean: *([-0-9.]*) -80: -- LOWER_THRESH is 10.000 -80: -- UPPER_THRESH is 10.000 -80: -- PARSED VALUE=|Mean: 10.000 0.000 0.000| -80: -- PARSED_VALUE=|10.000| -80: Not an error -356/578 Test #78: vf-zero-check ......................... Passed 0.09 sec -test 86 - Start 86: plm-compare-a-check - -86: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=7.76" "-DUPPER_THRESH=7.78" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -86: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -86: Test timeout computed to be: 1500 -357/578 Test #80: vf-trans-1-check ...................... Passed 0.09 sec -test 88 - Start 88: plm-compare-b-check - -88: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -88: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -88: Test timeout computed to be: 1500 -23: RETVAL: 0 -23: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-a.mha -23: -23: STDERR: -23: Not an error -16: RETVAL: 0 -16: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-7.mha -16: -16: STDERR: -574: RETVAL: 0 -574: STDOUT: -574: [PLAN] -574: patient : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha -574: target : -574: dose_out : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha -574: debug : 0 -574: dose norm : 100 -574: -574: [SETTINGS] -574: flavor: d ** -574: homo_approx: n ** -574: ray_step: 1 ** -574: aperture_out: ** -574: proj_dose_out: ** -574: proj_img_out: ** -574: range_comp_out: ** -574: sigma_out: ** -574: wed_out: ** -574: beam_weight: 1 ** -574: -574: [GEOMETRY & APERTURE] -574: source: 0 -2000 0 ** -574: isocenter: 0 0 0 ** -574: vup: 0 0 1 ** -574: offset: 1500 ** -574: ap_center in pixels: 20 20 ** -574: i_res: 41 41 ** -574: spacing: 3.75 3.75 ** -574: source_size: 0 ** -574: ap_file_in: ** -574: rc_file_in: ** -574: smearing: 5 ** -574: -574: [PEAK] -574: E0: P0 -574: spread: P0 -574: weight: P0 -574: -574: Start dose calculation Beam 1 -574: Plan_calc::compute_beam_dose(beam) entry -- -574: Setting RVRTS = 1 -574: FPD = 347.500001, BPD = 649.116731 -574: 41 41 302 -574: Setting RVRTS = 1 -574: FPD = 347.500001, BPD = 649.116731 -574: 41 41 302 -574: FPD = 347.500001, BPD = 649.116731 -574: 41 41 302 -574: Setting RVRTS = 1 -574: FPD = 347.500001, BPD = 649.116731 -574: 41 41 302 -574: Priority 1. Beamlet map file detected: Any manual peaks set, depth prescription, target or range compensator will not be considered. -574: Dose is null in the entire volume. Please check your input conditions. -574: 1 x 100%. -574: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm -574: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha -574: Sigma: 0.000000 seconds -574: Calc: 0.127994 seconds -574: IO: 0.072450 seconds -574: Reformat: 0.023962 seconds -574: Misc: 0.005890 seconds -574: done. -574: -574: Total execution time : 0.230693 seconds. -574: -574: STDERR: -574: Not an error -16: Not an error -36: RETVAL: 0 -36: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-7.mha -36: -36: STDERR: -84: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt -84: -- REGEX is Mean abs: *([-0-9.]*) -84: -- LOWER_THRESH is 5.15 -84: -- UPPER_THRESH is 5.16 -84: -- PARSED VALUE=|Mean abs: 5.157 5.157 5.157| -84: -- PARSED_VALUE=|5.157| -84: Not an error -358/578 Test #23: gw-lung-a ............................. Passed 0.52 sec -test 90 - Start 90: plm-compare-c-check - -90: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -90: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -90: Test timeout computed to be: 1500 -36: Not an error -359/578 Test #16: gauss-7 ............................... Passed 0.59 sec -360/578 Test #84: vf-radial-1-check ..................... Passed 0.06 sec test 93 Start 93: plm-diff-a-check @@ -19175,36 +19148,6 @@ 96: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt" "-DREGEX=Ave len: *([-0-9.]*)" "-DLOWER_THRESH=14.141" "-DUPPER_THRESH=14.143" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 96: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 96: Test timeout computed to be: 1500 -86: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt -86: -- REGEX is AVE *([-0-9.]*) -86: -- LOWER_THRESH is 7.76 -86: -- UPPER_THRESH is 7.78 -86: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786| -86: -- PARSED_VALUE=|7.769665| -86: Not an error -35: RETVAL: 0 -35: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-6.mha -35: -35: STDERR: -35: Not an error -50: RETVAL: 0 -50: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-18.mha -50: -50: STDERR: -50: Not an error -88: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt -88: -- REGEX is Ave len: *([-0-9.]*) -88: -- LOWER_THRESH is 14.141 -88: -- UPPER_THRESH is 14.143 -88: -- PARSED VALUE=|Ave len: 14.142| -88: -- PARSED_VALUE=|14.142| -88: Not an error -361/578 Test #574: proton-dose-8d ........................ Passed 0.69 sec -362/578 Test #35: rect-6 ................................ Passed 0.45 sec -363/578 Test #36: rect-7 ................................ Passed 0.44 sec -364/578 Test #50: rect-18 ............................... Passed 0.33 sec -365/578 Test #86: plm-compare-a-check ................... Passed 0.07 sec -366/578 Test #88: plm-compare-b-check ................... Passed 0.06 sec test 98 Start 98: demons-a-check @@ -19235,76 +19178,6 @@ 110: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-a-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 110: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 110: Test timeout computed to be: 1500 -test 113 - Start 113: fdk-cpu-d-check - -113: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -113: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -113: Test timeout computed to be: 1500 -90: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt -90: -- REGEX is Ave len: *([-0-9.]*) -90: -- LOWER_THRESH is 14.141 -90: -- UPPER_THRESH is 14.143 -90: -- PARSED VALUE=|Ave len: 14.142| -90: -- PARSED_VALUE=|14.142| -90: Not an error -41: RETVAL: 0 -41: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10-roi-2.mha -41: -41: STDERR: -41: Not an error -93: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt -93: -- REGEX is AVE *([-0-9.]*) -93: -- LOWER_THRESH is 7.76 -93: -- UPPER_THRESH is 7.78 -93: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872| -93: -- PARSED_VALUE=|7.769665| -93: Not an error -96: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt -96: -- REGEX is Ave len: *([-0-9.]*) -96: -- LOWER_THRESH is 14.141 -96: -- UPPER_THRESH is 14.143 -96: -- PARSED VALUE=|Ave len: 14.142| -96: -- PARSED_VALUE=|14.142| -96: Not an error -24: RETVAL: 0 -24: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-b.mha -24: -24: STDERR: -24: Not an error -60: RETVAL: 0 -60: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rgc-1.mha -60: -60: STDERR: -60: Not an error -98: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt -98: -- REGEX is ^Mean: *([0-9.]*) -98: -- LOWER_THRESH is 3.4 -98: -- UPPER_THRESH is 3.5 -98: -- PARSED VALUE=|Mean: 3.443 0.016 0.016| -98: -- PARSED_VALUE=|3.443| -98: Not an error -101: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt -101: -- REGEX is MAX *([-0-9.]*) -101: -- LOWER_THRESH is 0.045 -101: -- UPPER_THRESH is 0.055 -101: -- PARSED VALUE=|MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384| -101: -- PARSED_VALUE=|0.050109| -101: Not an error -104: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt -104: -- REGEX is MAX *([-0-9.]*) -104: -- LOWER_THRESH is 0.045 -104: -- UPPER_THRESH is 0.055 -104: -- PARSED VALUE=|MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384| -104: -- PARSED_VALUE=|0.049634| -104: Not an error -367/578 Test #24: gw-lung-b ............................. Passed 0.61 sec -368/578 Test #41: rect-10-roi-2 ......................... Passed 0.51 sec -369/578 Test #90: plm-compare-c-check ................... Passed 0.12 sec -370/578 Test #93: plm-diff-a-check ...................... Passed 0.11 sec -371/578 Test #96: plm-diff-b-check ...................... Passed 0.10 sec -372/578 Test #98: demons-a-check ........................ Passed 0.09 sec -373/578 Test #101: drr-a-check ........................... Passed 0.07 sec test 116 Start 116: landmark-warp-a-check-1 @@ -19347,12 +19220,175 @@ 129: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=landmark-warp-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=lm-warp;-a;tps;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 129: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 129: Test timeout computed to be: 1500 -374/578 Test #104: drr-b-check ........................... Passed 0.12 sec +test 132 + Start 132: plm-add-a-check + +132: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +132: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +132: Test timeout computed to be: 1500 +test 135 + Start 135: plm-add-b-check + +135: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-500.1" "-DUPPER_THRESH=-499.9" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +135: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +135: Test timeout computed to be: 1500 +test 138 + Start 138: plm-add-vf-a-check + +138: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=20.000" "-DUPPER_THRESH=20.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +138: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +138: Test timeout computed to be: 1500 +test 141 + Start 141: plm-add-vf-b-check + +141: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.000" "-DUPPER_THRESH=5.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +141: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +141: Test timeout computed to be: 1500 +test 144 + Start 144: plm-adjust-a-check + +144: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +144: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +144: Test timeout computed to be: 1500 +test 147 + Start 147: plm-adjust-b-check + +147: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +147: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +147: Test timeout computed to be: 1500 +test 150 + Start 150: plm-adjust-c-check + +150: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +150: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +150: Test timeout computed to be: 1500 +test 153 + Start 153: plm-adjust-d-check + +153: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-782.97" "-DUPPER_THRESH=-782.96" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +153: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +153: Test timeout computed to be: 1500 +test 156 + Start 156: plm-adjust-e-check + +156: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1298.87" "-DUPPER_THRESH=-1298.86" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +156: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +156: Test timeout computed to be: 1500 +360/578 Test #36: rect-7 ................................ Passed 0.25 sec +361/578 Test #69: xramp-1 ............................... Passed 0.34 sec +362/578 Test #70: yramp-1 ............................... Passed 0.33 sec +71: RETVAL: 0 +71: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha +71: +71: STDERR: +71: Not an error +363/578 Test #76: vf-gaussian-1 ......................... Passed 0.33 sec +364/578 Test #80: vf-trans-1-check ...................... Passed 0.19 sec +78: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-zero-stats.stdout.txt +78: -- REGEX is Mean abs: *([-0-9.]*) +78: -- LOWER_THRESH is 0.000 +78: -- UPPER_THRESH is 0.000 +78: -- PARSED VALUE=|Mean abs: 0.000 0.000 0.000| +78: -- PARSED_VALUE=|0.000| +78: Not an error +365/578 Test #78: vf-zero-check ......................... Passed 0.20 sec +82: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-trans-2-stats.stdout.txt +82: -- REGEX is Mean: *[-0-9.]* *([-0-9.]*) +82: -- LOWER_THRESH is 10.000 +82: -- UPPER_THRESH is 10.000 +82: -- PARSED VALUE=|Mean: 0.000 10.000 0.000| +82: -- PARSED_VALUE=|10.000| +82: Not an error +366/578 Test #82: vf-trans-2-check ...................... Passed 0.19 sec 25: RETVAL: 0 25: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gw/lung-c.mha 25: 25: STDERR: 25: Not an error +367/578 Test #25: gw-lung-c ............................. Passed 0.38 sec +84: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-radial-1-stats.stdout.txt +84: -- REGEX is Mean abs: *([-0-9.]*) +84: -- LOWER_THRESH is 5.15 +84: -- UPPER_THRESH is 5.16 +84: -- PARSED VALUE=|Mean abs: 5.157 5.157 5.157| +84: -- PARSED_VALUE=|5.157| +84: Not an error +368/578 Test #84: vf-radial-1-check ..................... Passed 0.19 sec +86: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-a.stdout.txt +86: -- REGEX is AVE *([-0-9.]*) +86: -- LOWER_THRESH is 7.76 +86: -- UPPER_THRESH is 7.78 +86: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786| +86: -- PARSED_VALUE=|7.769665| +86: Not an error +369/578 Test #86: plm-compare-a-check ................... Passed 0.19 sec +88: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-b.stdout.txt +88: -- REGEX is Ave len: *([-0-9.]*) +88: -- LOWER_THRESH is 14.141 +88: -- UPPER_THRESH is 14.143 +88: -- PARSED VALUE=|Ave len: 14.142| +88: -- PARSED_VALUE=|14.142| +88: Not an error +370/578 Test #88: plm-compare-b-check ................... Passed 0.18 sec +90: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compare-c.stdout.txt +90: -- REGEX is Ave len: *([-0-9.]*) +90: -- LOWER_THRESH is 14.141 +90: -- UPPER_THRESH is 14.143 +90: -- PARSED VALUE=|Ave len: 14.142| +90: -- PARSED_VALUE=|14.142| +90: Not an error +371/578 Test #90: plm-compare-c-check ................... Passed 0.18 sec +26: RETVAL: 0 +26: STDOUT: Doing extraction +26: Keyholizing structure 0. +26: Write: DoseGridScaling = 0.000000 +26: +26: STDERR: +26: Not an error +112: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +112: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d.mha +112: EXPECTED_ERRNO is +569: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +569: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d.mha +569: EXPECTED_ERRNO is +574: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +574: PARMS is dose;--command-file;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.txt +574: EXPECTED_ERRNO is +93: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-a-stats.stdout.txt +93: -- REGEX is AVE *([-0-9.]*) +93: -- LOWER_THRESH is 7.76 +93: -- UPPER_THRESH is 7.78 +93: -- PARSED VALUE=|MIN -558.201904 AVE 7.769665 MAX 558.680786 NONZERO 54872 NUMVOX 54872| +93: -- PARSED_VALUE=|7.769665| +93: Not an error +96: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-diff-b-stats.stdout.txt +96: -- REGEX is Ave len: *([-0-9.]*) +96: -- LOWER_THRESH is 14.141 +96: -- UPPER_THRESH is 14.143 +96: -- PARSED VALUE=|Ave len: 14.142| +96: -- PARSED_VALUE=|14.142| +96: Not an error +98: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/demons-a.stdout.txt +98: -- REGEX is ^Mean: *([0-9.]*) +98: -- LOWER_THRESH is 3.4 +98: -- UPPER_THRESH is 3.5 +98: -- PARSED VALUE=|Mean: 3.443 0.016 0.016| +98: -- PARSED_VALUE=|3.443| +98: Not an error +101: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-a-stats.stdout.txt +101: -- REGEX is MAX *([-0-9.]*) +101: -- LOWER_THRESH is 0.045 +101: -- UPPER_THRESH is 0.055 +101: -- PARSED VALUE=|MIN 0.000000 AVE 0.000135 MAX 0.050109 NUM 16384| +101: -- PARSED_VALUE=|0.050109| +101: Not an error +104: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-b-stats.stdout.txt +104: -- REGEX is MAX *([-0-9.]*) +104: -- LOWER_THRESH is 0.045 +104: -- UPPER_THRESH is 0.055 +104: -- PARSED VALUE=|MIN 0.000000 AVE 0.000138 MAX 0.049634 NUM 16384| +104: -- PARSED_VALUE=|0.049634| +104: Not an error 107: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/drr-c-stats.stdout.txt 107: -- REGEX is MAX *([-0-9.]*) 107: -- LOWER_THRESH is 0.045 @@ -19367,18 +19403,6 @@ 110: -- PARSED VALUE=|MIN -1000.000000 AVE -999.859619 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| 110: -- PARSED_VALUE=|-987.021973| 110: Not an error -113: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt -113: -- REGEX is MAX *([-0-9.]*) -113: -- LOWER_THRESH is -987.5 -113: -- UPPER_THRESH is -986.5 -113: -- PARSED VALUE=|MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| -113: -- PARSED_VALUE=|-987.021973| -113: Not an error -69: RETVAL: 0 -69: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xramp-1.mha -69: -69: STDERR: -69: Not an error 116: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-a-stats-1.stdout.txt 116: -- REGEX is AVE *([-0-9.]*) 116: -- LOWER_THRESH is -992.0 @@ -19407,56 +19431,6 @@ 123: -- PARSED VALUE=|Mean: -1.500 0.018 0.000| 123: -- PARSED_VALUE=|-1.500| 123: Not an error -375/578 Test #25: gw-lung-c ............................. Passed 0.64 sec -376/578 Test #60: rgc-1 ................................. Passed 0.46 sec -377/578 Test #107: drr-c-check ........................... Passed 0.11 sec -378/578 Test #110: fdk-cpu-a-check ....................... Passed 0.09 sec -379/578 Test #113: fdk-cpu-d-check ....................... Passed 0.08 sec -380/578 Test #118: landmark-warp-a-check-2 ............... Passed 0.05 sec -test 132 - Start 132: plm-add-a-check - -132: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1000.1" "-DUPPER_THRESH=-999.9" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -132: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -132: Test timeout computed to be: 1500 -test 135 - Start 135: plm-add-b-check - -135: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-500.1" "-DUPPER_THRESH=-499.9" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -135: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -135: Test timeout computed to be: 1500 -test 138 - Start 138: plm-add-vf-a-check - -138: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=20.000" "-DUPPER_THRESH=20.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -138: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -138: Test timeout computed to be: 1500 -test 141 - Start 141: plm-add-vf-b-check - -141: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.000" "-DUPPER_THRESH=5.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -141: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -141: Test timeout computed to be: 1500 -test 144 - Start 144: plm-adjust-a-check - -144: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -144: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -144: Test timeout computed to be: 1500 -test 147 - Start 147: plm-adjust-b-check - -147: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -147: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -147: Test timeout computed to be: 1500 -test 150 - Start 150: plm-adjust-c-check - -150: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-819.55" "-DUPPER_THRESH=-819.54" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -150: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -150: Test timeout computed to be: 1500 -381/578 Test #121: landmark-warp-b-check-1 ............... Passed 0.09 sec -382/578 Test #123: landmark-warp-b-check-2 ............... Passed 0.09 sec 126: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-stats-1.stdout.txt 126: -- REGEX is AVE *([-0-9.]*) 126: -- LOWER_THRESH is -992.0 @@ -19471,19 +19445,9 @@ 128: -- PARSED VALUE=|Mean: -1.562 0.019 0.000| 128: -- PARSED_VALUE=|-1.562| 128: Not an error -70: RETVAL: 0 -70: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/yramp-1.mha -70: -70: STDERR: -70: Not an error 129: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 129: PARMS is lm-warp;-a;tps;-f;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;-m;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-3.fcsv;-I;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;-O;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha;-V;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha;-L;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv 129: EXPECTED_ERRNO is -71: RETVAL: 0 -71: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/zramp-1.mha -71: -71: STDERR: -71: Not an error 132: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-a-stats.stdout.txt 132: -- REGEX is AVE *([-0-9.]*) 132: -- LOWER_THRESH is -1000.1 @@ -19498,25 +19462,21 @@ 135: -- PARSED VALUE=|MIN -500.000000 AVE -500.000000 MAX -500.000000 NONZERO 54872 NUMVOX 54872| 135: -- PARSED_VALUE=|-500.000000| 135: Not an error -383/578 Test #69: xramp-1 ............................... Passed 0.48 sec -384/578 Test #70: yramp-1 ............................... Passed 0.47 sec -385/578 Test #71: zramp-1 ............................... Passed 0.46 sec -386/578 Test #116: landmark-warp-a-check-1 ............... Passed 0.11 sec -387/578 Test #126: landmark-warp-c-check-1 ............... Passed 0.08 sec -388/578 Test #128: landmark-warp-c-check-2 ............... Passed 0.08 sec -389/578 Test #132: plm-add-a-check ....................... Passed 0.05 sec -test 153 - Start 153: plm-adjust-d-check - -153: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-782.97" "-DUPPER_THRESH=-782.96" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -153: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -153: Test timeout computed to be: 1500 -test 156 - Start 156: plm-adjust-e-check - -156: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-1298.87" "-DUPPER_THRESH=-1298.86" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -156: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -156: Test timeout computed to be: 1500 +372/578 Test #71: zramp-1 ............................... Passed 0.33 sec +373/578 Test #93: plm-diff-a-check ...................... Passed 0.16 sec +374/578 Test #96: plm-diff-b-check ...................... Passed 0.16 sec +375/578 Test #98: demons-a-check ........................ Passed 0.16 sec +376/578 Test #101: drr-a-check ........................... Passed 0.16 sec +377/578 Test #104: drr-b-check ........................... Passed 0.15 sec +378/578 Test #107: drr-c-check ........................... Passed 0.15 sec +379/578 Test #110: fdk-cpu-a-check ....................... Passed 0.15 sec +380/578 Test #116: landmark-warp-a-check-1 ............... Passed 0.15 sec +381/578 Test #118: landmark-warp-a-check-2 ............... Passed 0.15 sec +382/578 Test #121: landmark-warp-b-check-1 ............... Passed 0.14 sec +383/578 Test #123: landmark-warp-b-check-2 ............... Passed 0.14 sec +384/578 Test #126: landmark-warp-c-check-1 ............... Passed 0.14 sec +385/578 Test #128: landmark-warp-c-check-2 ............... Passed 0.14 sec +386/578 Test #132: plm-add-a-check ....................... Passed 0.13 sec test 159 Start 159: plm-adjust-f-check @@ -19559,13 +19519,136 @@ 177: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-b-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1056" "-DUPPER_THRESH=1056" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 177: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 177: Test timeout computed to be: 1500 -138: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt -138: -- REGEX is Mean: *([-0-9.]*) -138: -- LOWER_THRESH is 20.000 -138: -- UPPER_THRESH is 20.000 -138: -- PARSED VALUE=|Mean: 20.000 0.000 0.000| -138: -- PARSED_VALUE=|20.000| -138: Not an error +test 180 + Start 180: plm-boundary-c-check + +180: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=840" "-DUPPER_THRESH=840" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +180: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +180: Test timeout computed to be: 1500 +test 183 + Start 183: plm-boundary-d-check + +183: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.614" "-DUPPER_THRESH=2.615" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +183: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +183: Test timeout computed to be: 1500 +test 186 + Start 186: plm-boundary-e-check + +186: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.141" "-DUPPER_THRESH=2.143" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +186: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +186: Test timeout computed to be: 1500 +test 189 + Start 189: plm-convert-dicom-a-check + +189: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt" "-DREGEX= 0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +189: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +189: Test timeout computed to be: 1500 +test 192 + Start 192: plm-convert-dicom-b-check + +192: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt" "-DREGEX=Patient Position . (.*[^ ]) *$" "-DMATCH_STRING=FFS" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" +192: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +192: Test timeout computed to be: 1500 +test 195 + Start 195: plm-convert-dicom-c-check + +195: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=280" "-DUPPER_THRESH=280" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +195: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +195: Test timeout computed to be: 1500 +test 196 + Start 196: plm-convert-dicom-d + +196: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +196: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +196: Test timeout computed to be: 1500 +test 197 + Start 197: plm-convert-dicom-e + +197: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +197: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +197: Test timeout computed to be: 1500 +test 198 + Start 198: plm-convert-dicom-f + +198: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-f" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-f-dicom;--referenced-ct;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +198: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +198: Test timeout computed to be: 1500 +test 201 + Start 201: plm-convert-dicom-donut-a-check + +201: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=2623" "-DUPPER_THRESH=2623" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +201: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +201: Test timeout computed to be: 1500 +test 204 + Start 204: plm-convert-dicom-donut-b-check + +204: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1924" "-DUPPER_THRESH=1924" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +204: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +204: Test timeout computed to be: 1500 +test 205 + Start 205: plm-convert-dicom-donut-c + +205: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +205: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +205: Test timeout computed to be: 1500 +test 208 + Start 208: plm-convert-cxt-check + +208: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +208: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +208: Test timeout computed to be: 1500 +test 212 + Start 212: plm-convert-dose-scale-check + +212: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=77.699" "-DUPPER_THRESH=77.7" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +212: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +212: Test timeout computed to be: 1500 +test 215 + Start 215: plm-crop-a-check-1 + +215: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=11 16 3" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" +215: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +215: Test timeout computed to be: 1500 +test 218 + Start 218: plm-crop-b-check-1 + +218: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=19 11 4" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" +218: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +218: Test timeout computed to be: 1500 +test 221 + Start 221: plm-crop-c-check-1 + +221: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=15 15 15" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" +221: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +221: Test timeout computed to be: 1500 +test 223 + Start 223: plm-dice-a-check-1 + +223: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.799" "-DUPPER_THRESH=0.801" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +223: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +223: Test timeout computed to be: 1500 +test 225 + Start 225: plm-dice-b-check-1 + +225: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +225: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +225: Test timeout computed to be: 1500 +test 227 + Start 227: plm-dice-c-check-1 + +227: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +227: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +227: Test timeout computed to be: 1500 +387/578 Test #26: pat-1 ................................. Passed 0.44 sec +112: RETVAL: 0 +112: STDOUT: MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600 +112: +112: STDERR: +569: RETVAL: 0 +569: STDOUT: MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000 +569: +569: STDERR: +388/578 Test #135: plm-add-b-check ....................... Passed 0.34 sec 141: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-b-stats.stdout.txt 141: -- REGEX is Mean: *([-0-9.]*) 141: -- LOWER_THRESH is 5.000 @@ -19573,20 +19656,23 @@ 141: -- PARSED VALUE=|Mean: 5.000 5.000 0.000| 141: -- PARSED_VALUE=|5.000| 141: Not an error +389/578 Test #141: plm-add-vf-b-check .................... Passed 0.34 sec 144: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-a-stats.stdout.txt -144: -- REGEX is AVE *([-0-9.]*) -144: -- LOWER_THRESH is -819.55 -144: -- UPPER_THRESH is -819.54 -144: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| -144: -- PARSED_VALUE=|-819.546265| -144: Not an error -147: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt -147: -- REGEX is AVE *([-0-9.]*) -147: -- LOWER_THRESH is -819.55 -147: -- UPPER_THRESH is -819.54 -147: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| -147: -- PARSED_VALUE=|-819.546265| -147: Not an error +144: -- REGEX is AVE *([-0-9.]*) +144: -- LOWER_THRESH is -819.55 +144: -- UPPER_THRESH is -819.54 +144: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| +144: -- PARSED_VALUE=|-819.546265| +144: Not an error +390/578 Test #144: plm-adjust-a-check .................... Passed 0.33 sec +138: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-add-vf-a-stats.stdout.txt +138: -- REGEX is Mean: *([-0-9.]*) +138: -- LOWER_THRESH is 20.000 +138: -- UPPER_THRESH is 20.000 +138: -- PARSED VALUE=|Mean: 20.000 0.000 0.000| +138: -- PARSED_VALUE=|20.000| +138: Not an error +391/578 Test #138: plm-add-vf-a-check .................... Passed 0.34 sec 150: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-c-stats.stdout.txt 150: -- REGEX is AVE *([-0-9.]*) 150: -- LOWER_THRESH is -819.55 @@ -19594,17 +19680,7 @@ 150: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| 150: -- PARSED_VALUE=|-819.546265| 150: Not an error -76: RETVAL: 0 -76: STDOUT: Setting header -76: Origin = -243.4211 -243.4211 -243.4211 -76: Size = 38 38 38 -76: Spacing = 13.1579 13.1579 13.1579 -76: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -76: Header was set -76: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/vf-gaussian-1.mha -76: -76: STDERR: -76: Not an error +392/578 Test #150: plm-adjust-c-check .................... Passed 0.33 sec 153: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-d-stats.stdout.txt 153: -- REGEX is AVE *([-0-9.]*) 153: -- LOWER_THRESH is -782.97 @@ -19612,6 +19688,15 @@ 153: -- PARSED VALUE=|MIN -800.000000 AVE -782.961060 MAX -600.000000 NONZERO 54872 NUMVOX 54872| 153: -- PARSED_VALUE=|-782.961060| 153: Not an error +393/578 Test #153: plm-adjust-d-check .................... Passed 0.33 sec +147: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-b-stats.stdout.txt +147: -- REGEX is AVE *([-0-9.]*) +147: -- LOWER_THRESH is -819.55 +147: -- UPPER_THRESH is -819.54 +147: -- PARSED VALUE=|MIN -900.000000 AVE -819.546265 MAX 95.012482 NONZERO 54872 NUMVOX 54872| +147: -- PARSED_VALUE=|-819.546265| +147: Not an error +394/578 Test #147: plm-adjust-b-check .................... Passed 0.33 sec 156: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-e-stats.stdout.txt 156: -- REGEX is AVE *([-0-9.]*) 156: -- LOWER_THRESH is -1298.87 @@ -19619,6 +19704,7 @@ 156: -- PARSED VALUE=|MIN -1500.000000 AVE -1298.865601 MAX 987.531189 NONZERO 54872 NUMVOX 54872| 156: -- PARSED_VALUE=|-1298.865601| 156: Not an error +395/578 Test #156: plm-adjust-e-check .................... Passed 0.33 sec 159: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-f-stats.stdout.txt 159: -- REGEX is AVE *([-0-9.]*) 159: -- LOWER_THRESH is -0.0196 @@ -19633,77 +19719,6 @@ 162: -- PARSED VALUE=|MIN -0.025301 AVE -0.000000 MAX 0.287606 NONZERO 54872 NUMVOX 54872| 162: -- PARSED_VALUE=|-0.000000| 162: Not an error -390/578 Test #76: vf-gaussian-1 ......................... Passed 0.44 sec -391/578 Test #135: plm-add-b-check ....................... Passed 0.10 sec -392/578 Test #138: plm-add-vf-a-check .................... Passed 0.09 sec -393/578 Test #141: plm-add-vf-b-check .................... Passed 0.08 sec -394/578 Test #144: plm-adjust-a-check .................... Passed 0.07 sec -395/578 Test #147: plm-adjust-b-check .................... Passed 0.07 sec -396/578 Test #150: plm-adjust-c-check .................... Passed 0.06 sec -397/578 Test #153: plm-adjust-d-check .................... Passed 0.06 sec -398/578 Test #156: plm-adjust-e-check .................... Passed 0.05 sec -399/578 Test #159: plm-adjust-f-check .................... Passed 0.05 sec -test 180 - Start 180: plm-boundary-c-check - -180: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=840" "-DUPPER_THRESH=840" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -180: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -180: Test timeout computed to be: 1500 -test 183 - Start 183: plm-boundary-d-check - -183: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.614" "-DUPPER_THRESH=2.615" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -183: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -183: Test timeout computed to be: 1500 -test 186 - Start 186: plm-boundary-e-check - -186: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-boundary-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=2.141" "-DUPPER_THRESH=2.143" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -186: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -186: Test timeout computed to be: 1500 -test 189 - Start 189: plm-convert-dicom-a-check - -189: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt" "-DREGEX= 0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -189: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -189: Test timeout computed to be: 1500 -test 192 - Start 192: plm-convert-dicom-b-check - -192: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt" "-DREGEX=Patient Position . (.*[^ ]) *$" "-DMATCH_STRING=FFS" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" -192: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -192: Test timeout computed to be: 1500 -test 195 - Start 195: plm-convert-dicom-c-check - -195: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=280" "-DUPPER_THRESH=280" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -195: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -195: Test timeout computed to be: 1500 -test 196 - Start 196: plm-convert-dicom-d - -196: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -196: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -196: Test timeout computed to be: 1500 -test 197 - Start 197: plm-convert-dicom-e - -197: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd" "-DEXPECTED_ERRNO=1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -197: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -197: Test timeout computed to be: 1500 -test 198 - Start 198: plm-convert-dicom-f - -198: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-f" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-1-dicom/rtss.dcm;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-f-dicom;--referenced-ct;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -198: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -198: Test timeout computed to be: 1500 -test 201 - Start 201: plm-convert-dicom-donut-a-check - -201: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-a-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=2623" "-DUPPER_THRESH=2623" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -201: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -201: Test timeout computed to be: 1500 -400/578 Test #162: plm-adjust-g-check .................... Passed 0.09 sec 165: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-adjust-h-stats.stdout.txt 165: -- REGEX is AVE *([-0-9.]*) 165: -- LOWER_THRESH is -0.2481 @@ -19760,76 +19775,6 @@ 186: -- PARSED VALUE=|MIN 0.000000 AVE 2.142000 MAX 56.000000 NONZERO 840 NUMVOX 8000| 186: -- PARSED_VALUE=|2.142000| 186: Not an error -401/578 Test #165: plm-adjust-h-check .................... Passed 0.07 sec -402/578 Test #168: plm-adjust-i-check .................... Passed 0.07 sec -403/578 Test #171: plm-adjust-j-check .................... Passed 0.06 sec -404/578 Test #174: plm-boundary-a-check .................. Passed 0.06 sec -405/578 Test #177: plm-boundary-b-check .................. Passed 0.05 sec -406/578 Test #180: plm-boundary-c-check .................. Passed 0.05 sec -407/578 Test #183: plm-boundary-d-check .................. Passed 0.04 sec -408/578 Test #186: plm-boundary-e-check .................. Passed 0.04 sec -test 204 - Start 204: plm-convert-dicom-donut-b-check - -204: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1924" "-DUPPER_THRESH=1924" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -204: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -204: Test timeout computed to be: 1500 -test 205 - Start 205: plm-convert-dicom-donut-c - -205: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-convert-dicom-donut-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -205: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -205: Test timeout computed to be: 1500 -test 208 - Start 208: plm-convert-cxt-check - -208: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt" "-DREGEX=S *0 *NVOX *([-0-9.]*)" "-DLOWER_THRESH=1648003" "-DUPPER_THRESH=1648003" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -208: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -208: Test timeout computed to be: 1500 -test 212 - Start 212: plm-convert-dose-scale-check - -212: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=77.699" "-DUPPER_THRESH=77.7" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -212: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -212: Test timeout computed to be: 1500 -test 215 - Start 215: plm-crop-a-check-1 - -215: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=11 16 3" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" -215: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -215: Test timeout computed to be: 1500 -test 218 - Start 218: plm-crop-b-check-1 - -218: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=19 11 4" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" -218: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -218: Test timeout computed to be: 1500 -test 221 - Start 221: plm-crop-c-check-1 - -221: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt" "-DREGEX=^Size = (.*)$" "-DMATCH_STRING=15 15 15" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" -221: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -221: Test timeout computed to be: 1500 -test 223 - Start 223: plm-dice-a-check-1 - -223: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.799" "-DUPPER_THRESH=0.801" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -223: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -223: Test timeout computed to be: 1500 -test 225 - Start 225: plm-dice-b-check-1 - -225: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=0.999" "-DUPPER_THRESH=1.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -225: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -225: Test timeout computed to be: 1500 -192: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt -192: -- REGEX is Patient Position . (.*[^ ]) *$ -192: -- MATCH_STRING is FFS -192: -- PARSED VALUE=|Patient Position = FFS | -192: -- PARSED_VALUE=|FFS| -192: -- LENGTH=3 -192: -- |FFS|FFS| -192: Not an error 189: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-a-stats.stdout.txt 189: -- REGEX is 0 *NVOX *([-0-9.]*) 189: -- LOWER_THRESH is 1648003 @@ -19847,6 +19792,11 @@ 196: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 196: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-d.nrrd 196: EXPECTED_ERRNO is 1 +196: RETVAL: 1 +196: STDOUT: Could not open input file /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/ for read +196: +196: STDERR: +196: Not an error 197: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 197: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/tmp/;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-e.nrrd 197: EXPECTED_ERRNO is 1 @@ -19860,13 +19810,6 @@ 201: -- PARSED VALUE=|S 0 NVOX 2623| 201: -- PARSED_VALUE=|2623| 201: Not an error -26: RETVAL: 0 -26: STDOUT: Doing extraction -26: Keyholizing structure 0. -26: Write: DoseGridScaling = 0.000000 -26: -26: STDERR: -26: Not an error 204: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-b-stats.stdout.txt 204: -- REGEX is S *0 *NVOX *([-0-9.]*) 204: -- LOWER_THRESH is 1924 @@ -19877,33 +19820,11 @@ 205: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 205: PARMS is convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1.mha;--input-ss-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss.mha;--input-ss-list;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt;--filenames-without-uids;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-donut-c 205: EXPECTED_ERRNO is -208: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt -208: -- REGEX is S *0 *NVOX *([-0-9.]*) -208: -- LOWER_THRESH is 1648003 -208: -- UPPER_THRESH is 1648003 -208: -- PARSED VALUE=|S 0 NVOX 1648003| -208: -- PARSED_VALUE=|1648003| -208: Not an error -212: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt -212: -- REGEX is MAX *([-0-9.]*) -212: -- LOWER_THRESH is 77.699 -212: -- UPPER_THRESH is 77.7 -212: -- PARSED VALUE=|MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872| -212: -- PARSED_VALUE=|77.699997| -212: Not an error -409/578 Test #26: pat-1 ................................. Passed 0.83 sec -410/578 Test #189: plm-convert-dicom-a-check ............. Passed 0.09 sec -411/578 Test #192: plm-convert-dicom-b-check ............. Passed 0.08 sec -412/578 Test #195: plm-convert-dicom-c-check ............. Passed 0.08 sec -413/578 Test #201: plm-convert-dicom-donut-a-check ....... Passed 0.06 sec -414/578 Test #204: plm-convert-dicom-donut-b-check ....... Passed 0.05 sec -415/578 Test #208: plm-convert-cxt-check ................. Passed 0.04 sec -test 227 - Start 227: plm-dice-c-check-1 - -227: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=26.31" "-DUPPER_THRESH=26.32" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -227: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -227: Test timeout computed to be: 1500 +396/578 Test #159: plm-adjust-f-check .................... Passed 0.22 sec +397/578 Test #162: plm-adjust-g-check .................... Passed 0.22 sec +398/578 Test #165: plm-adjust-h-check .................... Passed 0.21 sec +399/578 Test #168: plm-adjust-i-check .................... Passed 0.21 sec +400/578 Test #171: plm-adjust-j-check .................... Passed 0.21 sec test 228 Start 228: plm-dice-c-check-2 @@ -19940,57 +19861,6 @@ 234: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt" "-DREGEX=^Avg average Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=7.07" "-DUPPER_THRESH=7.08" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 234: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 234: Test timeout computed to be: 1500 -215: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt -215: -- REGEX is ^Size = (.*)$ -215: -- MATCH_STRING is 11 16 3 -215: -- PARSED VALUE=|Size = 11 16 3| -215: -- PARSED_VALUE=|11 16 3| -215: -- LENGTH=7 -215: -- |11 16 3|11 16 3| -215: Not an error -218: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt -218: -- REGEX is ^Size = (.*)$ -218: -- MATCH_STRING is 19 11 4 -218: -- PARSED VALUE=|Size = 19 11 4| -218: -- PARSED_VALUE=|19 11 4| -218: -- LENGTH=7 -218: -- |19 11 4|19 11 4| -218: Not an error -221: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt -221: -- REGEX is ^Size = (.*)$ -221: -- MATCH_STRING is 15 15 15 -221: -- PARSED VALUE=|Size = 15 15 15| -221: -- PARSED_VALUE=|15 15 15| -221: -- LENGTH=8 -221: -- |15 15 15|15 15 15| -221: Not an error -225: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt -225: -- REGEX is ^DICE: *([-0-9.]*) -225: -- LOWER_THRESH is 0.999 -225: -- UPPER_THRESH is 1.000 -225: -- PARSED VALUE=|DICE: 1.000000| -225: -- PARSED_VALUE=|1.000000| -225: Not an error -223: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt -223: -- REGEX is ^DICE: *([-0-9.]*) -223: -- LOWER_THRESH is 0.799 -223: -- UPPER_THRESH is 0.801 -223: -- PARSED VALUE=|DICE: 0.800000| -223: -- PARSED_VALUE=|0.800000| -223: Not an error -228: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt -228: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*) -228: -- LOWER_THRESH is 3.40 -228: -- UPPER_THRESH is 3.41 -228: -- PARSED VALUE=|Avg average Hausdorff distance = 3.406955| -228: -- PARSED_VALUE=|3.406955| -228: Not an error -416/578 Test #212: plm-convert-dose-scale-check .......... Passed 0.08 sec -417/578 Test #215: plm-crop-a-check-1 .................... Passed 0.08 sec -418/578 Test #218: plm-crop-b-check-1 .................... Passed 0.07 sec -419/578 Test #221: plm-crop-c-check-1 .................... Passed 0.06 sec -420/578 Test #223: plm-dice-a-check-1 .................... Passed 0.06 sec -421/578 Test #225: plm-dice-b-check-1 .................... Passed 0.05 sec test 235 Start 235: plm-dice-d-check-3 @@ -20027,7 +19897,198 @@ 242: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt" "-DREGEX=^DICE: *([-0-9.]*)" "-DLOWER_THRESH=1" "-DUPPER_THRESH=1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 242: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 242: Test timeout computed to be: 1500 -422/578 Test #228: plm-dice-c-check-2 .................... Passed 0.08 sec +test 243 + Start 243: plm-dice-f-check-2 + +243: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=0" "-DUPPER_THRESH=0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +243: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +243: Test timeout computed to be: 1500 +test 244 + Start 244: plm-dmap-a + +244: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;maurer;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +244: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +244: Test timeout computed to be: 1500 +112: Not an error +401/578 Test #112: fdk-cpu-d-stats ....................... Passed 0.42 sec +569: Not an error +402/578 Test #569: proton-dose-5d-stats .................. Passed 0.42 sec +403/578 Test #174: plm-boundary-a-check .................. Passed 0.24 sec +404/578 Test #177: plm-boundary-b-check .................. Passed 0.24 sec +405/578 Test #180: plm-boundary-c-check .................. Passed 0.24 sec +406/578 Test #183: plm-boundary-d-check .................. Passed 0.23 sec +407/578 Test #186: plm-boundary-e-check .................. Passed 0.23 sec +408/578 Test #189: plm-convert-dicom-a-check ............. Passed 0.23 sec +409/578 Test #195: plm-convert-dicom-c-check ............. Passed 0.23 sec +410/578 Test #196: plm-convert-dicom-d ................... Passed 0.22 sec +197: RETVAL: 1 +197: STDOUT: Sorry, could not load input as any known type. +197: +197: STDERR: +197: Not an error +198: RETVAL: 0 +198: STDOUT: Loading RDD +198: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359128RTDOSE +198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359129RTSTRUCT +198: Found DCM_ReferencedFrameOfReferenceSequence! +198: Found DCM_RTReferencedStudySequence! +198: Trying to load rt dose. +198: Load: DoseGridScaling = 0.000000 +198: RTDOSE: dim = 38 38 38 +198: ipp = -243.421005 -243.421005 -243.421005 +198: spc = 13.157900 13.157900 13.157900 +198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +198: Bits_alloc: 32 +198: Bits_stored: 32 +198: High_bit: 31 +198: Pixel_rep: 0 +198: rc = 1, length = 109744, npix = 54872 +198: Trying to load rt structure set. +198: Adding structure (1), Foreground +198: Structure 1 has color 255\0\0 +198: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359128RTDOSE +198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359129RTSTRUCT +198: Found DCM_ReferencedFrameOfReferenceSequence! +198: Found DCM_RTReferencedStudySequence! +198: Trying to load rt dose. +198: Load: DoseGridScaling = 0.000000 +198: RTDOSE: dim = 38 38 38 +198: ipp = -243.421005 -243.421005 -243.421005 +198: spc = 13.157900 13.157900 13.157900 +198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +198: Bits_alloc: 32 +198: Bits_stored: 32 +198: High_bit: 31 +198: Pixel_rep: 0 +198: rc = 1, length = 109744, npix = 54872 +198: Trying to load rt structure set. +198: Adding structure (1), Foreground +198: Structure 1 has color 255\0\0 +198: Loading RDD complete +198: date_string: 20250707 +198: description_string: +198: referring_physician_name_string: +198: accession_number_string: +198: time_string: 172854 +198: study_id_string: +198: position_reference_indicator_string: +198: ct_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359127 +198: dose_instance_uid: +198: dose_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3224973.1751858939.732498 +198: plan_instance_uid: +198: rtstruct_instance_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359125 +198: rtstruct_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.3224973.1751858939.732499 +198: study_metadata: +198: Metadata +198: 0008,0052 | 1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359108 +198: 0010,0010 | RECT^SYNTH +198: 0010,0020 | RECT-SYNTH +198: 0010,0040 | O +198: 0018,5100 | HFS +198: 0020,000d | 1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359107 +198: 0020,0010 | 10001 +198: image_metadata: +198: Metadata +198: 0008,0012 | 20250707 +198: 0008,0013 | 172854 +198: 0008,0060 | CT +198: 0008,103e | rect-2 +198: rtstruct_metadata: +198: Metadata +198: dose_metadata: +198: Metadata +198: rtplan_metadata: +198: Metadata +198: sro_metadata: +198: Metadata +198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205339.1751858934.315446RTSTRUCT +198: Found DCM_ReferencedFrameOfReferenceSequence! +198: Found DCM_RTReferencedStudySequence! +198: Trying to load rt structure set. +198: Adding structure (1), Foreground +198: Structure 1 has color 255\0\0 +198: Setting PIH from RDD +198: PIH is: +198: Origin = -243.4211 -243.4211 -243.4211 +198: Size = 38 38 38 +198: Spacing = 13.1579 13.1579 13.1579 +198: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +198: Rt_study_warp: Convert ss_img to cxt. +198: Rt_study_warp: Apply dicom_dir. +198: Rt_study_warp: Set geometry from PIH. +198: Rt_study_warp: Set rasterization geometry. +198: rast_dim = 512 512 7 +198: rast_offset = -55.2632 -55.2632 -46.0526 +198: rast_spacing = 0.215872 0.215872 13.1579 +198: Rt_study_warp: warp and save ss. +198: Warp_and_save_ss: save_ss_img +198: Rt_study_warp: Save dicom. +198: Keyholizing structure 0. +198: Finished! +198: +198: STDERR: +198: Not an error +411/578 Test #201: plm-convert-dicom-donut-a-check ....... Passed 0.22 sec +412/578 Test #204: plm-convert-dicom-donut-b-check ....... Passed 0.22 sec +215: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-a-stats.stdout.txt +215: -- REGEX is ^Size = (.*)$ +215: -- MATCH_STRING is 11 16 3 +215: -- PARSED VALUE=|Size = 11 16 3| +215: -- PARSED_VALUE=|11 16 3| +215: -- LENGTH=7 +215: -- |11 16 3|11 16 3| +215: Not an error +413/578 Test #215: plm-crop-a-check-1 .................... Passed 0.21 sec +212: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dose-scale-stats.stdout.txt +212: -- REGEX is MAX *([-0-9.]*) +212: -- LOWER_THRESH is 77.699 +212: -- UPPER_THRESH is 77.7 +212: -- PARSED VALUE=|MIN 0.000000 AVE 0.294533 MAX 77.699997 NONZERO 208 NUMVOX 54872| +212: -- PARSED_VALUE=|77.699997| +212: Not an error +414/578 Test #212: plm-convert-dose-scale-check .......... Passed 0.21 sec +208: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-cxt-stats.stdout.txt +208: -- REGEX is S *0 *NVOX *([-0-9.]*) +208: -- LOWER_THRESH is 1648003 +208: -- UPPER_THRESH is 1648003 +208: -- PARSED VALUE=|S 0 NVOX 1648003| +208: -- PARSED_VALUE=|1648003| +208: Not an error +415/578 Test #208: plm-convert-cxt-check ................. Passed 0.22 sec +218: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-b-stats.stdout.txt +218: -- REGEX is ^Size = (.*)$ +218: -- MATCH_STRING is 19 11 4 +218: -- PARSED VALUE=|Size = 19 11 4| +218: -- PARSED_VALUE=|19 11 4| +218: -- LENGTH=7 +218: -- |19 11 4|19 11 4| +218: Not an error +416/578 Test #218: plm-crop-b-check-1 .................... Passed 0.21 sec +221: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-crop-c-stats.stdout.txt +221: -- REGEX is ^Size = (.*)$ +221: -- MATCH_STRING is 15 15 15 +221: -- PARSED VALUE=|Size = 15 15 15| +221: -- PARSED_VALUE=|15 15 15| +221: -- LENGTH=8 +221: -- |15 15 15|15 15 15| +221: Not an error +417/578 Test #221: plm-crop-c-check-1 .................... Passed 0.21 sec +223: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-a.stdout.txt +223: -- REGEX is ^DICE: *([-0-9.]*) +223: -- LOWER_THRESH is 0.799 +223: -- UPPER_THRESH is 0.801 +223: -- PARSED VALUE=|DICE: 0.800000| +223: -- PARSED_VALUE=|0.800000| +223: Not an error +418/578 Test #223: plm-dice-a-check-1 .................... Passed 0.21 sec +225: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-b.stdout.txt +225: -- REGEX is ^DICE: *([-0-9.]*) +225: -- LOWER_THRESH is 0.999 +225: -- UPPER_THRESH is 1.000 +225: -- PARSED VALUE=|DICE: 1.000000| +225: -- PARSED_VALUE=|1.000000| +225: Not an error +419/578 Test #225: plm-dice-b-check-1 .................... Passed 0.20 sec 227: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 227: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 227: -- LOWER_THRESH is 26.31 @@ -20035,13 +20096,133 @@ 227: -- PARSED VALUE=|Hausdorff distance = 26.315790| 227: -- PARSED_VALUE=|26.315790| 227: Not an error -231: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt -231: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*) -231: -- LOWER_THRESH is 26.31 -231: -- UPPER_THRESH is 26.32 -231: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 26.315790| -231: -- PARSED_VALUE=|26.315790| -231: Not an error +420/578 Test #227: plm-dice-c-check-1 .................... Passed 0.20 sec +192: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-dicom-b-stats.stdout.txt +192: -- REGEX is Patient Position . (.*[^ ]) *$ +192: -- MATCH_STRING is FFS +192: -- PARSED VALUE=|Patient Position = FFS | +192: -- PARSED_VALUE=|FFS| +192: -- LENGTH=3 +192: -- |FFS|FFS| +192: Not an error +421/578 Test #192: plm-convert-dicom-b-check ............. Passed 0.23 sec +129: RETVAL: 0 +129: STDOUT: Hello world +129: Gonna convert pointsets +129: Pointset: +129: rect-2-0 -26.271700 -52.162899 46.052799 +129: rect-2-1 65.870201 -52.543598 46.053001 +129: rect-2-2 65.870201 52.543900 46.053001 +129: rect-2-3 -25.510201 53.686199 46.053001 +129: rect-2-4 -25.891001 -52.162899 -46.052502 +129: rect-2-5 66.631699 -53.305099 -46.053001 +129: rect-2-6 65.870201 53.305401 -46.053001 +129: rect-2-7 -25.129499 53.686199 -46.053001 +129: Conversion complete. +129: -26.2717 -52.1629 46.0528 +129: 65.8702 -52.5436 46.053 +129: 65.8702 52.5439 46.053 +129: -25.5102 53.6862 46.053 +129: -25.891 -52.1629 -46.0525 +129: 66.6317 -53.3051 -46.053 +129: 65.8702 53.3054 -46.053 +129: -25.1295 53.6862 -46.053 +129: Setting landmarks to TPS +129: Computing matrix +129: Setting xform +129: Converting to VF +129: Warping... +129: landmark 0 err 0.796775 mm +129: landmark 1 err 0.857190 mm +129: landmark 2 err 0.875645 mm +129: landmark 3 err 0.888102 mm +129: landmark 4 err 0.831617 mm +129: landmark 5 err 0.807000 mm +129: landmark 6 err 1.057389 mm +129: landmark 7 err 1.167740 mm +129: landmark RMS err 0.918533 mm +129: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha +129: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha +129: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv +129: +129: STDERR: +129: Not an error +422/578 Test #129: landmark-warp-d ....................... Passed 0.39 sec +574: RETVAL: 0 +574: STDOUT: +574: [PLAN] +574: patient : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-17.mha +574: target : +574: dose_out : /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha +574: debug : 0 +574: dose norm : 100 +574: +574: [SETTINGS] +574: flavor: d ** +574: homo_approx: n ** +574: ray_step: 1 ** +574: aperture_out: ** +574: proj_dose_out: ** +574: proj_img_out: ** +574: range_comp_out: ** +574: sigma_out: ** +574: wed_out: ** +574: beam_weight: 1 ** +574: +574: [GEOMETRY & APERTURE] +574: source: 0 -2000 0 ** +574: isocenter: 0 0 0 ** +574: vup: 0 0 1 ** +574: offset: 1500 ** +574: ap_center in pixels: 20 20 ** +574: i_res: 41 41 ** +574: spacing: 3.75 3.75 ** +574: source_size: 0 ** +574: ap_file_in: ** +574: rc_file_in: ** +574: smearing: 5 ** +574: +574: [PEAK] +574: E0: P0 +574: spread: P0 +574: weight: P0 +574: +574: Start dose calculation Beam 1 +574: Plan_calc::compute_beam_dose(beam) entry -- +574: Setting RVRTS = 1 +574: FPD = 347.500001, BPD = 649.116731 +574: 41 41 302 +574: Setting RVRTS = 1 +574: FPD = 347.500001, BPD = 649.116731 +574: 41 41 302 +574: FPD = 347.500001, BPD = 649.116731 +574: 41 41 302 +574: Setting RVRTS = 1 +574: FPD = 347.500001, BPD = 649.116731 +574: 41 41 302 +574: Priority 1. Beamlet map file detected: Any manual peaks set, depth prescription, target or range compensator will not be considered. +574: Dose is null in the entire volume. Please check your input conditions. +574: 1 x 100%. +574: Primary PB num. x, y: 41, 41, primary PB res. x, y: 0.266667 PB/mm, 0.266667 PB/mm +574: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha +574: Sigma: 0.000000 seconds +574: Calc: 0.173029 seconds +574: IO: 0.085229 seconds +574: Reformat: 0.011484 seconds +574: Misc: 0.003401 seconds +574: done. +574: +574: Total execution time : 0.273324 seconds. +574: +574: STDERR: +574: Not an error +228: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt +228: -- REGEX is ^Avg average Hausdorff distance = *([-0-9.]*) +228: -- LOWER_THRESH is 3.40 +228: -- UPPER_THRESH is 3.41 +228: -- PARSED VALUE=|Avg average Hausdorff distance = 3.406955| +228: -- PARSED_VALUE=|3.406955| +228: Not an error 229: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt 229: -- REGEX is ^Avg average Hausdorff distance \(boundary\) = *([-0-9.]*) 229: -- LOWER_THRESH is 7.11 @@ -20056,6 +20237,13 @@ 230: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 8.534851| 230: -- PARSED_VALUE=|8.534851| 230: Not an error +231: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-c.stdout.txt +231: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*) +231: -- LOWER_THRESH is 26.31 +231: -- UPPER_THRESH is 26.32 +231: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 26.315790| +231: -- PARSED_VALUE=|26.315790| +231: Not an error 233: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt 233: -- REGEX is ^Hausdorff distance = *([-0-9.]*) 233: -- LOWER_THRESH is 45.575 @@ -20077,25 +20265,37 @@ 235: -- PARSED VALUE=|Avg average Hausdorff distance (boundary) = 14.894061| 235: -- PARSED_VALUE=|14.894061| 235: Not an error -423/578 Test #227: plm-dice-c-check-1 .................... Passed 0.09 sec -424/578 Test #229: plm-dice-c-check-3 .................... Passed 0.08 sec -425/578 Test #230: plm-dice-c-check-4 .................... Passed 0.07 sec -426/578 Test #231: plm-dice-c-check-5 .................... Passed 0.07 sec -427/578 Test #233: plm-dice-d-check-1 .................... Passed 0.06 sec -428/578 Test #234: plm-dice-d-check-2 .................... Passed 0.06 sec -429/578 Test #235: plm-dice-d-check-3 .................... Passed 0.05 sec -test 243 - Start 243: plm-dice-f-check-2 - -243: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt" "-DREGEX=^Hausdorff distance = *([-0-9.]*)" "-DLOWER_THRESH=0" "-DUPPER_THRESH=0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -243: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -243: Test timeout computed to be: 1500 -test 244 - Start 244: plm-dmap-a +236: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt +236: -- REGEX is ^Max average Hausdorff distance \(boundary\) = *([-0-9.]*) +236: -- LOWER_THRESH is 18.38 +236: -- UPPER_THRESH is 18.39 +236: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 18.384613| +236: -- PARSED_VALUE=|18.384613| +236: Not an error +237: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt +237: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*) +237: -- LOWER_THRESH is 32.89 +237: -- UPPER_THRESH is 32.90 +237: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 32.894737| +237: -- PARSED_VALUE=|32.894737| +237: Not an error +423/578 Test #574: proton-dose-8d ........................ Passed 0.43 sec +424/578 Test #197: plm-convert-dicom-e ................... Passed 0.23 sec +425/578 Test #198: plm-convert-dicom-f ................... Passed 0.23 sec +426/578 Test #228: plm-dice-c-check-2 .................... Passed 0.04 sec +427/578 Test #229: plm-dice-c-check-3 .................... Passed 0.04 sec +428/578 Test #230: plm-dice-c-check-4 .................... Passed 0.04 sec +429/578 Test #231: plm-dice-c-check-5 .................... Passed 0.03 sec +430/578 Test #233: plm-dice-d-check-1 .................... Passed 0.03 sec +431/578 Test #234: plm-dice-d-check-2 .................... Passed 0.03 sec +432/578 Test #235: plm-dice-d-check-3 .................... Passed 0.03 sec +433/578 Test #236: plm-dice-d-check-4 .................... Passed 0.03 sec +test 113 + Start 113: fdk-cpu-d-check -244: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-dmap-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=dmap;--algorithm;maurer;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -244: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -244: Test timeout computed to be: 1500 +113: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt" "-DREGEX=MAX *([-0-9.]*)" "-DLOWER_THRESH=-987.5" "-DUPPER_THRESH=-986.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +113: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +113: Test timeout computed to be: 1500 test 246 Start 246: plm-dmap-c @@ -20132,67 +20332,6 @@ 254: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv" "-DREGEX=^15,([-0-9.]*)" "-DLOWER_THRESH=0.780" "-DUPPER_THRESH=0.783" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 254: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 254: Test timeout computed to be: 1500 -236: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt -236: -- REGEX is ^Max average Hausdorff distance \(boundary\) = *([-0-9.]*) -236: -- LOWER_THRESH is 18.38 -236: -- UPPER_THRESH is 18.39 -236: -- PARSED VALUE=|Max average Hausdorff distance (boundary) = 18.384613| -236: -- PARSED_VALUE=|18.384613| -236: Not an error -237: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-d.stdout.txt -237: -- REGEX is ^Percent .* \(boundary\) = *([-0-9.]*) -237: -- LOWER_THRESH is 32.89 -237: -- UPPER_THRESH is 32.90 -237: -- PARSED VALUE=|Percent (0.95) Hausdorff distance (boundary) = 32.894737| -237: -- PARSED_VALUE=|32.894737| -237: Not an error -240: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt -240: -- REGEX is ^Hausdorff distance = *([-0-9.]*) -240: -- LOWER_THRESH is 4 -240: -- UPPER_THRESH is 4 -240: -- PARSED VALUE=|Hausdorff distance = 4.000000| -240: -- PARSED_VALUE=|4.000000| -240: Not an error -239: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt -239: -- REGEX is ^DICE: *([-0-9.]*) -239: -- LOWER_THRESH is 0.96550 -239: -- UPPER_THRESH is 0.96554 -239: -- PARSED VALUE=|DICE: 0.965517| -239: -- PARSED_VALUE=|0.965517| -239: Not an error -242: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt -242: -- REGEX is ^DICE: *([-0-9.]*) -242: -- LOWER_THRESH is 1 -242: -- UPPER_THRESH is 1 -242: -- PARSED VALUE=|DICE: 1.000000| -242: -- PARSED_VALUE=|1.000000| -242: Not an error -243: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt -243: -- REGEX is ^Hausdorff distance = *([-0-9.]*) -243: -- LOWER_THRESH is 0 -243: -- UPPER_THRESH is 0 -243: -- PARSED VALUE=|Hausdorff distance = 0.000000| -243: -- PARSED_VALUE=|0.000000| -243: Not an error -244: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -244: PARMS is dmap;--algorithm;maurer;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha -244: EXPECTED_ERRNO is -246: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -246: PARMS is dmap;--algorithm;song_maurer;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha -246: EXPECTED_ERRNO is -248: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv -248: -- REGEX is ^15,([-0-9.]*), -248: -- LOWER_THRESH is 0.999 -248: -- UPPER_THRESH is 1.0 -248: -- PARSED VALUE=|15,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| -248: -- PARSED_VALUE=|1| -248: Not an error -430/578 Test #236: plm-dice-d-check-4 .................... Passed 0.10 sec -431/578 Test #237: plm-dice-d-check-5 .................... Passed 0.10 sec -432/578 Test #239: plm-dice-e-check-1 .................... Passed 0.09 sec -433/578 Test #240: plm-dice-e-check-2 .................... Passed 0.09 sec -434/578 Test #242: plm-dice-f-check-1 .................... Passed 0.08 sec -435/578 Test #243: plm-dice-f-check-2 .................... Passed 0.07 sec test 255 Start 255: plm-dvh-c-check-2 @@ -20229,111 +20368,6 @@ 269: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt" "-DREGEX=Pass rate = *([-0-9.]*)" "-DLOWER_THRESH=90.6" "-DUPPER_THRESH=90.8" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 269: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 269: Test timeout computed to be: 1500 -436/578 Test #248: plm-dvh-a-check-1 ..................... Passed 0.10 sec -249: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv -249: -- REGEX is ^15.5,([-0-9.]*), -249: -- LOWER_THRESH is 0.0 -249: -- UPPER_THRESH is 0.001 -249: -- PARSED VALUE=|15.5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| -249: -- PARSED_VALUE=|0| -249: Not an error -251: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv -251: -- REGEX is ^15,([-0-9.]*) -251: -- LOWER_THRESH is 0.999 -251: -- UPPER_THRESH is 1.0 -251: -- PARSED VALUE=|15,1| -251: -- PARSED_VALUE=|1| -251: Not an error -254: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv -254: -- REGEX is ^15,([-0-9.]*) -254: -- LOWER_THRESH is 0.780 -254: -- UPPER_THRESH is 0.783 -254: -- PARSED VALUE=|15,0.781709| -254: -- PARSED_VALUE=|0.781709| -254: Not an error -252: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv -252: -- REGEX is ^15.5,([-0-9.]*) -252: -- LOWER_THRESH is 0.0 -252: -- UPPER_THRESH is 0.001 -252: -- PARSED VALUE=|15.5,0| -252: -- PARSED_VALUE=|0| -252: Not an error -129: RETVAL: 0 -129: STDOUT: Hello world -129: Gonna convert pointsets -129: Pointset: -129: rect-2-0 -26.271700 -52.162899 46.052799 -129: rect-2-1 65.870201 -52.543598 46.053001 -129: rect-2-2 65.870201 52.543900 46.053001 -129: rect-2-3 -25.510201 53.686199 46.053001 -129: rect-2-4 -25.891001 -52.162899 -46.052502 -129: rect-2-5 66.631699 -53.305099 -46.053001 -129: rect-2-6 65.870201 53.305401 -46.053001 -129: rect-2-7 -25.129499 53.686199 -46.053001 -129: Conversion complete. -129: -26.2717 -52.1629 46.0528 -129: 65.8702 -52.5436 46.053 -129: 65.8702 52.5439 46.053 -129: -25.5102 53.6862 46.053 -129: -25.891 -52.1629 -46.0525 -129: 66.6317 -53.3051 -46.053 -129: 65.8702 53.3054 -46.053 -129: -25.1295 53.6862 -46.053 -129: Setting landmarks to TPS -129: Computing matrix -129: Setting xform -129: Converting to VF -129: Warping... -129: landmark 0 err 0.796775 mm -129: landmark 1 err 0.857190 mm -129: landmark 2 err 0.875645 mm -129: landmark 3 err 0.888102 mm -129: landmark 4 err 0.831617 mm -129: landmark 5 err 0.807000 mm -129: landmark 6 err 1.057389 mm -129: landmark 7 err 1.167740 mm -129: landmark RMS err 0.918533 mm -129: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-img.mha -129: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d-vf.mha -129: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-d.fcsv -129: -129: STDERR: -129: Not an error -255: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv -255: -- REGEX is ^15.5,([-0-9.]*) -255: -- LOWER_THRESH is 0.0 -255: -- UPPER_THRESH is 0.001 -255: -- PARSED VALUE=|15.5,0| -255: -- PARSED_VALUE=|0| -255: Not an error -258: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt -258: -- REGEX is AVE *([-0-9.]*) -258: -- LOWER_THRESH is -0.1 -258: -- UPPER_THRESH is +0.1 -258: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872| -258: -- PARSED_VALUE=|0.000000| -258: Not an error -261: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt -261: -- REGEX is AVE *([-0-9.]*) -261: -- LOWER_THRESH is -1000.1 -261: -- UPPER_THRESH is -999.9 -261: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872| -261: -- PARSED_VALUE=|-1000.000000| -261: Not an error -264: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt -264: -- REGEX is AVE *([-0-9.]*) -264: -- LOWER_THRESH is 0.023 -264: -- UPPER_THRESH is 0.024 -264: -- PARSED VALUE=|MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000| -264: -- PARSED_VALUE=|0.023500| -264: Not an error -437/578 Test #129: landmark-warp-d ....................... Passed 0.45 sec -438/578 Test #249: plm-dvh-a-check-2 ..................... Passed 0.10 sec -439/578 Test #251: plm-dvh-b-check-1 ..................... Passed 0.09 sec -440/578 Test #252: plm-dvh-b-check-2 ..................... Passed 0.09 sec -441/578 Test #254: plm-dvh-c-check-1 ..................... Passed 0.09 sec -442/578 Test #255: plm-dvh-c-check-2 ..................... Passed 0.07 sec -443/578 Test #258: plm-fill-a-check ...................... Passed 0.05 sec test 271 Start 271: plm-gamma-d-check @@ -20382,65 +20416,6 @@ 290: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-939.3" "-DUPPER_THRESH=-939.1" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 290: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 290: Test timeout computed to be: 1500 -444/578 Test #261: plm-mask-a-check ...................... Passed 0.12 sec -445/578 Test #264: plm-gamma-a-check ..................... Passed 0.12 sec -267: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt -267: -- REGEX is AVE *([-0-9.]*) -267: -- LOWER_THRESH is 0.245 -267: -- UPPER_THRESH is 0.255 -267: -- PARSED VALUE=|MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000| -267: -- PARSED_VALUE=|0.250000| -267: Not an error -196: RETVAL: 1 -196: STDOUT: Could not open input file /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/non-existant-directory/ for read -196: -196: STDERR: -196: Not an error -269: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt -269: -- REGEX is Pass rate = *([-0-9.]*) -269: -- LOWER_THRESH is 90.6 -269: -- UPPER_THRESH is 90.8 -269: -- PARSED VALUE=|Pass rate = 90.719998 %| -269: -- PARSED_VALUE=|90.719998| -269: Not an error -271: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt -271: -- REGEX is Pass rate = *([-0-9.]*) -271: -- LOWER_THRESH is 89.9 -271: -- UPPER_THRESH is 90.1 -271: -- PARSED VALUE=|Pass rate = 89.999998 %| -271: -- PARSED_VALUE=|89.999998| -271: Not an error -274: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt -274: -- REGEX is AVE *([-0-9.]*) -274: -- LOWER_THRESH is 0.0 -274: -- UPPER_THRESH is 0.0 -274: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872| -274: -- PARSED_VALUE=|0.000000| -274: Not an error -277: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a-stats.stdout.txt -277: -- REGEX is AVE *([-0-9.]*) -277: -- LOWER_THRESH is 0.0 -277: -- UPPER_THRESH is 0.0 -277: -- PARSED VALUE=|MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872| -277: -- PARSED_VALUE=|0.000000| -277: Not an error -280: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt -280: -- REGEX is Mean: *([-0-9.]*) -280: -- LOWER_THRESH is 100.000 -280: -- UPPER_THRESH is 100.000 -280: -- PARSED VALUE=|Mean: 100.000 100.000 100.000| -280: -- PARSED_VALUE=|100.000| -280: Not an error -281: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -281: PARMS is -281: EXPECTED_ERRNO is -446/578 Test #196: plm-convert-dicom-d ................... Passed 0.38 sec -447/578 Test #267: plm-gamma-b-check ..................... Passed 0.11 sec -448/578 Test #269: plm-gamma-c-check ..................... Passed 0.10 sec -449/578 Test #271: plm-gamma-d-check ..................... Passed 0.08 sec -450/578 Test #274: plm-maximum-a-check ................... Passed 0.07 sec -451/578 Test #277: plm-multiply-a-check .................. Passed 0.06 sec -452/578 Test #280: plm-multiply-vf-a-check ............... Passed 0.05 sec test 292 Start 292: plm-reg-itk-rigid-a-check-2 @@ -20495,18 +20470,203 @@ 310: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.stdout.txt" "-DREGEX=VF_AVG +[^ ] +([-0-9.]*)" "-DLOWER_THRESH=31.85" "-DUPPER_THRESH=35.95" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 310: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 310: Test timeout computed to be: 1500 -197: RETVAL: 1 -197: STDOUT: Sorry, could not load input as any known type. -197: -197: STDERR: -197: Not an error -287: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-stats.stdout.txt -287: -- REGEX is AVE *([-0-9.]*) -287: -- LOWER_THRESH is -677.6 -287: -- UPPER_THRESH is -677.5 -287: -- PARSED VALUE=|MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872| -287: -- PARSED_VALUE=|-677.557922| -287: Not an error +test 313 + Start 313: plm-bsp-mse-c-check + +313: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +313: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +313: Test timeout computed to be: 1500 +test 316 + Start 316: plm-bsp-mse-g-check + +316: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +316: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +316: Test timeout computed to be: 1500 +test 319 + Start 319: plm-bsp-mse-h-check + +319: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +319: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +319: Test timeout computed to be: 1500 +434/578 Test #237: plm-dice-d-check-5 .................... Passed 0.08 sec +239: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt +239: -- REGEX is ^DICE: *([-0-9.]*) +239: -- LOWER_THRESH is 0.96550 +239: -- UPPER_THRESH is 0.96554 +239: -- PARSED VALUE=|DICE: 0.965517| +239: -- PARSED_VALUE=|0.965517| +239: Not an error +435/578 Test #239: plm-dice-e-check-1 .................... Passed 0.08 sec +240: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-e.stdout.txt +240: -- REGEX is ^Hausdorff distance = *([-0-9.]*) +240: -- LOWER_THRESH is 4 +240: -- UPPER_THRESH is 4 +240: -- PARSED VALUE=|Hausdorff distance = 4.000000| +240: -- PARSED_VALUE=|4.000000| +240: Not an error +436/578 Test #240: plm-dice-e-check-2 .................... Passed 0.08 sec +242: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt +242: -- REGEX is ^DICE: *([-0-9.]*) +242: -- LOWER_THRESH is 1 +242: -- UPPER_THRESH is 1 +242: -- PARSED VALUE=|DICE: 1.000000| +242: -- PARSED_VALUE=|1.000000| +242: Not an error +437/578 Test #242: plm-dice-f-check-1 .................... Passed 0.08 sec +205: RETVAL: 0 +205: STDOUT: Trying to load ss_list: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt +205: Setting PIH from M_IMG +205: PIH is: +205: Origin = -25.0000 -25.0000 -25.0000 +205: Size = 38 38 38 +205: Spacing = 1.3158 1.3158 1.3158 +205: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +205: Rt_study_warp: Convert ss_img to cxt. +205: Doing extraction +205: Rt_study_warp: Apply dicom_dir. +205: Rt_study_warp: Set geometry from PIH. +205: Rt_study_warp: Set rasterization geometry. +205: rast_dim = 512 512 14 +205: rast_offset = -10.3618 -10.3618 -9.21053 +205: rast_spacing = 0.0404759 0.0404759 1.31579 +205: Rt_study_warp: warp and save ss. +205: Warp_and_save_ss: save_ss_img +205: Rt_study_warp: Save dicom. +205: Keyholizing structure 0. +205: Finished! +205: +205: STDERR: +205: Not an error +438/578 Test #205: plm-convert-dicom-donut-c ............. Passed 0.28 sec +243: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dice-f.stdout.txt +243: -- REGEX is ^Hausdorff distance = *([-0-9.]*) +243: -- LOWER_THRESH is 0 +243: -- UPPER_THRESH is 0 +243: -- PARSED VALUE=|Hausdorff distance = 0.000000| +243: -- PARSED_VALUE=|0.000000| +243: Not an error +439/578 Test #243: plm-dice-f-check-2 .................... Passed 0.07 sec +244: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +244: PARMS is dmap;--algorithm;maurer;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha +244: EXPECTED_ERRNO is +113: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/fdk-cpu-d-stats.stdout.txt +113: -- REGEX is MAX *([-0-9.]*) +113: -- LOWER_THRESH is -987.5 +113: -- UPPER_THRESH is -986.5 +113: -- PARSED VALUE=|MIN -1000.000000 AVE -999.848633 MAX -987.021973 NONZERO 6553600 NUMVOX 6553600| +113: -- PARSED_VALUE=|-987.021973| +113: Not an error +246: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +246: PARMS is dmap;--algorithm;song_maurer;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-4.mha;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha +246: EXPECTED_ERRNO is +248: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv +248: -- REGEX is ^15,([-0-9.]*), +248: -- LOWER_THRESH is 0.999 +248: -- UPPER_THRESH is 1.0 +248: -- PARSED VALUE=|15,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| +248: -- PARSED_VALUE=|1| +248: Not an error +249: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-a.csv +249: -- REGEX is ^15.5,([-0-9.]*), +249: -- LOWER_THRESH is 0.0 +249: -- UPPER_THRESH is 0.001 +249: -- PARSED VALUE=|15.5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0| +249: -- PARSED_VALUE=|0| +249: Not an error +251: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv +251: -- REGEX is ^15,([-0-9.]*) +251: -- LOWER_THRESH is 0.999 +251: -- UPPER_THRESH is 1.0 +251: -- PARSED VALUE=|15,1| +251: -- PARSED_VALUE=|1| +251: Not an error +252: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-b.csv +252: -- REGEX is ^15.5,([-0-9.]*) +252: -- LOWER_THRESH is 0.0 +252: -- UPPER_THRESH is 0.001 +252: -- PARSED VALUE=|15.5,0| +252: -- PARSED_VALUE=|0| +252: Not an error +254: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv +254: -- REGEX is ^15,([-0-9.]*) +254: -- LOWER_THRESH is 0.780 +254: -- UPPER_THRESH is 0.783 +254: -- PARSED VALUE=|15,0.781709| +254: -- PARSED_VALUE=|0.781709| +254: Not an error +255: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dvh-c.csv +255: -- REGEX is ^15.5,([-0-9.]*) +255: -- LOWER_THRESH is 0.0 +255: -- UPPER_THRESH is 0.001 +255: -- PARSED VALUE=|15.5,0| +255: -- PARSED_VALUE=|0| +255: Not an error +258: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-fill-a-stats.stdout.txt +258: -- REGEX is AVE *([-0-9.]*) +258: -- LOWER_THRESH is -0.1 +258: -- UPPER_THRESH is +0.1 +258: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872| +258: -- PARSED_VALUE=|0.000000| +258: Not an error +261: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-mask-a-stats.stdout.txt +261: -- REGEX is AVE *([-0-9.]*) +261: -- LOWER_THRESH is -1000.1 +261: -- UPPER_THRESH is -999.9 +261: -- PARSED VALUE=|MIN -1000.000000 AVE -1000.000000 MAX -1000.000000 NONZERO 54872 NUMVOX 54872| +261: -- PARSED_VALUE=|-1000.000000| +261: Not an error +264: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-a-stats.stdout.txt +264: -- REGEX is AVE *([-0-9.]*) +264: -- LOWER_THRESH is 0.023 +264: -- UPPER_THRESH is 0.024 +264: -- PARSED VALUE=|MIN 0.000000 AVE 0.023500 MAX 0.666667 NONZERO 400 NUMVOX 8000| +264: -- PARSED_VALUE=|0.023500| +264: Not an error +267: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-b-stats.stdout.txt +267: -- REGEX is AVE *([-0-9.]*) +267: -- LOWER_THRESH is 0.245 +267: -- UPPER_THRESH is 0.255 +267: -- PARSED VALUE=|MIN 0.000000 AVE 0.250000 MAX 2.000000 NONZERO 1000 NUMVOX 8000| +267: -- PARSED_VALUE=|0.250000| +267: Not an error +269: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-c.stdout.txt +269: -- REGEX is Pass rate = *([-0-9.]*) +269: -- LOWER_THRESH is 90.6 +269: -- UPPER_THRESH is 90.8 +269: -- PARSED VALUE=|Pass rate = 90.719998 %| +269: -- PARSED_VALUE=|90.719998| +269: Not an error +271: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-gamma-d.stdout.txt +271: -- REGEX is Pass rate = *([-0-9.]*) +271: -- LOWER_THRESH is 89.9 +271: -- UPPER_THRESH is 90.1 +271: -- PARSED VALUE=|Pass rate = 89.999998 %| +271: -- PARSED_VALUE=|89.999998| +271: Not an error +274: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-maximum-a-stats.stdout.txt +274: -- REGEX is AVE *([-0-9.]*) +274: -- LOWER_THRESH is 0.0 +274: -- UPPER_THRESH is 0.0 +274: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 54872| +274: -- PARSED_VALUE=|0.000000| +274: Not an error +277: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-a-stats.stdout.txt +277: -- REGEX is AVE *([-0-9.]*) +277: -- LOWER_THRESH is 0.0 +277: -- UPPER_THRESH is 0.0 +277: -- PARSED VALUE=|MIN -0.000000 AVE 0.000000 MAX -0.000000 NONZERO 0 NUMVOX 54872| +277: -- PARSED_VALUE=|0.000000| +277: Not an error +280: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-multiply-vf-a-stats.stdout.txt +280: -- REGEX is Mean: *([-0-9.]*) +280: -- LOWER_THRESH is 100.000 +280: -- UPPER_THRESH is 100.000 +280: -- PARSED VALUE=|Mean: 100.000 100.000 100.000| +280: -- PARSED_VALUE=|100.000| +280: Not an error +281: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +281: PARMS is +281: EXPECTED_ERRNO is 284: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-align-center-stats.stdout.txt 284: -- REGEX is MAE *([-0-9.]*) 284: -- LOWER_THRESH is -0.005 @@ -20514,6 +20674,13 @@ 284: -- PARSED VALUE=|MAE 0.000002 MSE 0.000000| 284: -- PARSED_VALUE=|0.000002| 284: Not an error +287: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-translation-stats.stdout.txt +287: -- REGEX is AVE *([-0-9.]*) +287: -- LOWER_THRESH is -677.6 +287: -- UPPER_THRESH is -677.5 +287: -- PARSED VALUE=|MIN -999.914246 AVE -677.557922 MAX 0.000000 NONZERO 43320 NUMVOX 54872| +287: -- PARSED_VALUE=|-677.557922| +287: Not an error 290: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-rigid-a-stats-1.stdout.txt 290: -- REGEX is AVE *([-0-9.]*) 290: -- LOWER_THRESH is -939.3 @@ -20542,31 +20709,44 @@ 297: -- PARSED VALUE=|MIN -1000.000000 AVE -940.684265 MAX 0.000000 NONZERO 52716 NUMVOX 54872| 297: -- PARSED_VALUE=|-940.684265| 297: Not an error -453/578 Test #197: plm-convert-dicom-e ................... Passed 0.44 sec -454/578 Test #284: plm-reg-align-center-check ............ Passed 0.09 sec -455/578 Test #287: plm-reg-itk-translation-check ......... Passed 0.08 sec -456/578 Test #290: plm-reg-itk-rigid-a-check-1 ........... Passed 0.08 sec -457/578 Test #292: plm-reg-itk-rigid-a-check-2 ........... Passed 0.07 sec -458/578 Test #295: plm-reg-itk-similarity-check-1 ........ Passed 0.05 sec -459/578 Test #297: plm-reg-itk-similarity-check-2 ........ Passed 0.04 sec -test 313 - Start 313: plm-bsp-mse-c-check - -313: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -313: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -313: Test timeout computed to be: 1500 -test 316 - Start 316: plm-bsp-mse-g-check - -316: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -316: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -316: Test timeout computed to be: 1500 -test 319 - Start 319: plm-bsp-mse-h-check - -319: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -319: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -319: Test timeout computed to be: 1500 +300: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-stats-1.stdout.txt +300: -- REGEX is AVE *([-0-9.]*) +300: -- LOWER_THRESH is -764.0 +300: -- UPPER_THRESH is -763.6 +300: -- PARSED VALUE=|MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872| +300: -- PARSED_VALUE=|-763.817810| +300: Not an error +302: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.stdout.txt +302: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) +302: -- LOWER_THRESH is 31.85 +302: -- UPPER_THRESH is 34.95 +302: -- PARSED VALUE=|VF_MAX = 97.6986 VF_AVG = 31.9237| +302: -- PARSED_VALUE=|31.9237| +302: Not an error +440/578 Test #113: fdk-cpu-d-check ....................... Passed 0.06 sec +441/578 Test #248: plm-dvh-a-check-1 ..................... Passed 0.06 sec +442/578 Test #249: plm-dvh-a-check-2 ..................... Passed 0.06 sec +443/578 Test #251: plm-dvh-b-check-1 ..................... Passed 0.06 sec +444/578 Test #252: plm-dvh-b-check-2 ..................... Passed 0.05 sec +445/578 Test #254: plm-dvh-c-check-1 ..................... Passed 0.05 sec +446/578 Test #255: plm-dvh-c-check-2 ..................... Passed 0.05 sec +447/578 Test #258: plm-fill-a-check ...................... Passed 0.05 sec +448/578 Test #261: plm-mask-a-check ...................... Passed 0.05 sec +449/578 Test #264: plm-gamma-a-check ..................... Passed 0.05 sec +450/578 Test #267: plm-gamma-b-check ..................... Passed 0.04 sec +451/578 Test #269: plm-gamma-c-check ..................... Passed 0.04 sec +452/578 Test #271: plm-gamma-d-check ..................... Passed 0.04 sec +453/578 Test #274: plm-maximum-a-check ................... Passed 0.04 sec +454/578 Test #277: plm-multiply-a-check .................. Passed 0.04 sec +455/578 Test #280: plm-multiply-vf-a-check ............... Passed 0.04 sec +456/578 Test #284: plm-reg-align-center-check ............ Passed 0.03 sec +457/578 Test #287: plm-reg-itk-translation-check ......... Passed 0.03 sec +458/578 Test #290: plm-reg-itk-rigid-a-check-1 ........... Passed 0.03 sec +459/578 Test #292: plm-reg-itk-rigid-a-check-2 ........... Passed 0.03 sec +460/578 Test #295: plm-reg-itk-similarity-check-1 ........ Passed 0.03 sec +461/578 Test #297: plm-reg-itk-similarity-check-2 ........ Passed 0.02 sec +462/578 Test #300: plm-reg-itk-bspline-check-1 ........... Passed 0.02 sec +463/578 Test #302: plm-reg-itk-demons-check-1 ............ Passed 0.02 sec test 322 Start 322: plm-bsp-mse-i-check @@ -20591,173 +20771,6 @@ 330: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-mse-o-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-o-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 330: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 330: Test timeout computed to be: 1500 -300: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-bspline-stats-1.stdout.txt -300: -- REGEX is AVE *([-0-9.]*) -300: -- LOWER_THRESH is -764.0 -300: -- UPPER_THRESH is -763.6 -300: -- PARSED VALUE=|MIN -999.992249 AVE -763.817810 MAX 0.000000 NONZERO 48346 NUMVOX 54872| -300: -- PARSED_VALUE=|-763.817810| -300: Not an error -302: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons.stdout.txt -302: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) -302: -- LOWER_THRESH is 31.85 -302: -- UPPER_THRESH is 34.95 -302: -- PARSED VALUE=|VF_MAX = 97.6986 VF_AVG = 31.9237| -302: -- PARSED_VALUE=|31.9237| -302: Not an error -198: RETVAL: 0 -198: STDOUT: Loading RDD -198: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4288RTDOSE -198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4289RTSTRUCT -198: Found DCM_ReferencedFrameOfReferenceSequence! -198: Found DCM_RTReferencedStudySequence! -198: Trying to load rt dose. -198: Load: DoseGridScaling = 0.000000 -198: RTDOSE: dim = 38 38 38 -198: ipp = -243.421005 -243.421005 -243.421005 -198: spc = 13.157900 13.157900 13.157900 -198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -198: Bits_alloc: 32 -198: Bits_stored: 32 -198: High_bit: 31 -198: Pixel_rep: 0 -198: rc = 1, length = 109744, npix = 54872 -198: Trying to load rt structure set. -198: Adding structure (1), Foreground -198: Structure 1 has color 255\0\0 -198: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4288RTDOSE -198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4289RTSTRUCT -198: Found DCM_ReferencedFrameOfReferenceSequence! -198: Found DCM_RTReferencedStudySequence! -198: Trying to load rt dose. -198: Load: DoseGridScaling = 0.000000 -198: RTDOSE: dim = 38 38 38 -198: ipp = -243.421005 -243.421005 -243.421005 -198: spc = 13.157900 13.157900 13.157900 -198: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -198: Bits_alloc: 32 -198: Bits_stored: 32 -198: High_bit: 31 -198: Pixel_rep: 0 -198: rc = 1, length = 109744, npix = 54872 -198: Trying to load rt structure set. -198: Adding structure (1), Foreground -198: Structure 1 has color 255\0\0 -198: Loading RDD complete -198: date_string: 20240603 -198: description_string: -198: referring_physician_name_string: -198: accession_number_string: -198: time_string: 085652 -198: study_id_string: -198: position_reference_indicator_string: -198: ct_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4287 -198: dose_instance_uid: -198: dose_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.1659125.1717448232.977822 -198: plan_instance_uid: -198: rtstruct_instance_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4285 -198: rtstruct_series_uid: 1.2.826.0.1.3680043.8.274.1.1.8323329.1659125.1717448232.977823 -198: study_metadata: -198: Metadata -198: 0008,0052 | 1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448212.4268 -198: 0010,0010 | RECT^SYNTH -198: 0010,0020 | RECT-SYNTH -198: 0010,0040 | O -198: 0018,5100 | HFS -198: 0020,000d | 1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448212.4267 -198: 0020,0010 | 10001 -198: image_metadata: -198: Metadata -198: 0008,0012 | 20240603 -198: 0008,0013 | 085652 -198: 0008,0060 | CT -198: 0008,103e | rect-2 -198: rtstruct_metadata: -198: Metadata -198: dose_metadata: -198: Metadata -198: rtplan_metadata: -198: Metadata -198: sro_metadata: -198: Metadata -198: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648233.1717448213.382360RTSTRUCT -198: Found DCM_ReferencedFrameOfReferenceSequence! -198: Found DCM_RTReferencedStudySequence! -198: Trying to load rt structure set. -198: Adding structure (1), Foreground -198: Structure 1 has color 255\0\0 -198: Setting PIH from RDD -198: PIH is: -198: Origin = -243.4211 -243.4211 -243.4211 -198: Size = 38 38 38 -198: Spacing = 13.1579 13.1579 13.1579 -198: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -198: Rt_study_warp: Convert ss_img to cxt. -198: Rt_study_warp: Apply dicom_dir. -198: Rt_study_warp: Set geometry from PIH. -198: Rt_study_warp: Set rasterization geometry. -198: rast_dim = 512 512 7 -198: rast_offset = -55.2632 -55.2632 -46.0526 -198: rast_spacing = 0.215872 0.215872 13.1579 -198: Rt_study_warp: warp and save ss. -198: Warp_and_save_ss: save_ss_img -198: Rt_study_warp: Save dicom. -198: Keyholizing structure 0. -198: Finished! -198: -198: STDERR: -198: Not an error -304: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-stats-2.stdout.txt -304: -- REGEX is AVE *([-0-9.]*) -304: -- LOWER_THRESH is -755.3 -304: -- UPPER_THRESH is -754.6 -304: -- PARSED VALUE=|MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872| -304: -- PARSED_VALUE=|-754.915161| -304: Not an error -306: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.stdout.txt -306: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) -306: -- LOWER_THRESH is 31.2 -306: -- UPPER_THRESH is 31.3 -306: -- PARSED VALUE=|VF_MAX = 102.433 VF_AVG = 31.2783| -306: -- PARSED_VALUE=|31.2783| -306: Not an error -308: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt -308: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) -308: -- LOWER_THRESH is 32.65 -308: -- UPPER_THRESH is 32.75 -308: -- PARSED VALUE=|VF_MAX = 112.668 VF_AVG = 32.7138| -308: -- PARSED_VALUE=|32.7138| -308: Not an error -310: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.stdout.txt -310: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) -310: -- LOWER_THRESH is 31.85 -310: -- UPPER_THRESH is 35.95 -310: -- PARSED VALUE=|VF_MAX = 109.365 VF_AVG = 31.9237| -310: -- PARSED_VALUE=|31.9237| -310: Not an error -313: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt -313: -- REGEX is AVE *([-0-9.]*) -313: -- LOWER_THRESH is -746.0 -313: -- UPPER_THRESH is -744.5 -313: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| -313: -- PARSED_VALUE=|-745.347717| -313: Not an error -316: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt -316: -- REGEX is AVE *([-0-9.]*) -316: -- LOWER_THRESH is -746.0 -316: -- UPPER_THRESH is -744.5 -316: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| -316: -- PARSED_VALUE=|-745.347717| -316: Not an error -460/578 Test #198: plm-convert-dicom-f ................... Passed 0.49 sec -461/578 Test #300: plm-reg-itk-bspline-check-1 ........... Passed 0.09 sec -462/578 Test #302: plm-reg-itk-demons-check-1 ............ Passed 0.09 sec -463/578 Test #304: plm-reg-itk-demons-check-2 ............ Passed 0.08 sec -464/578 Test #306: plm-reg-itk-demons-diff-check-1 ....... Passed 0.08 sec -465/578 Test #308: plm-reg-itk-demons-logd-check-1 ....... Passed 0.07 sec -466/578 Test #310: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.06 sec -467/578 Test #313: plm-bsp-mse-c-check ................... Passed 0.06 sec -468/578 Test #316: plm-bsp-mse-g-check ................... Passed 0.05 sec test 332 Start 332: plm-bsp-mse-p-stats @@ -20812,13 +20825,154 @@ 353: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-openmp-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-746.0" "-DUPPER_THRESH=-744.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 353: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 353: Test timeout computed to be: 1500 -322: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt -322: -- REGEX is AVE *([-0-9.]*) -322: -- LOWER_THRESH is -746.0 -322: -- UPPER_THRESH is -744.5 -322: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| -322: -- PARSED_VALUE=|-745.347717| -322: Not an error +test 355 + Start 355: plm-bsp-resume-stats + +355: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +355: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +355: Test timeout computed to be: 1500 +test 357 + Start 357: plm-bsp-logfile-check + +357: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-logfile.txt" "-DREGEX=\[.*, 5] MSE *([-0-9.]*)" "-DLOWER_THRESH=281.5" "-DUPPER_THRESH=282.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +357: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +357: Test timeout computed to be: 1500 +test 360 + Start 360: plm-bsp-ushort-check + +360: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=106.6" "-DUPPER_THRESH=107.6" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +360: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +360: Test timeout computed to be: 1500 +test 363 + Start 363: plm-bsp-double-check + +363: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=107.6" "-DUPPER_THRESH=108.6" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +363: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +363: Test timeout computed to be: 1500 +test 364 + Start 364: plm-bsp-itk-output + +364: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-itk-output" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-itk-output.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +364: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +364: Test timeout computed to be: 1500 +test 367 + Start 367: plm-bsp-char-output-check + +367: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt" "-DREGEX=MIN *([-0-9.]*)" "-DLOWER_THRESH=-128.1" "-DUPPER_THRESH=-127.9" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +367: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +367: Test timeout computed to be: 1500 +test 371 + Start 371: plm-bsp-regularize-none-check + +371: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.31" "-DUPPER_THRESH=0.32" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +371: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +371: Test timeout computed to be: 1500 +test 374 + Start 374: plm-bsp-regularize-analytic-check + +374: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.415" "-DUPPER_THRESH=0.425" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +374: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +374: Test timeout computed to be: 1500 +test 377 + Start 377: plm-bsp-regularize-numeric-check + +377: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.440" "-DUPPER_THRESH=0.445" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +377: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +377: Test timeout computed to be: 1500 +test 378 + Start 378: plm-bsp-landmark-a + +378: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +378: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +378: Test timeout computed to be: 1500 +test 381 + Start 381: plm-bsp-landmark-b-check + +381: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +381: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +381: Test timeout computed to be: 1500 +test 384 + Start 384: plm-bsp-landmark-c-check + +384: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +384: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +384: Test timeout computed to be: 1500 +test 387 + Start 387: plm-bsp-landmark-d-check + +387: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +387: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +387: Test timeout computed to be: 1500 +test 390 + Start 390: plm-bsp-landmark-e-check + +390: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +390: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +390: Test timeout computed to be: 1500 +test 393 + Start 393: plm-bsp-dcos-a-check + +393: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +393: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +393: Test timeout computed to be: 1500 +test 396 + Start 396: plm-bsp-dcos-b-check + +396: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +396: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +396: Test timeout computed to be: 1500 +test 399 + Start 399: plm-bsp-dcos-c-check + +399: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +399: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +399: Test timeout computed to be: 1500 +304: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-stats-2.stdout.txt +304: -- REGEX is AVE *([-0-9.]*) +304: -- LOWER_THRESH is -755.3 +304: -- UPPER_THRESH is -754.6 +304: -- PARSED VALUE=|MIN -999.914856 AVE -754.915161 MAX 0.000000 NONZERO 47950 NUMVOX 54872| +304: -- PARSED_VALUE=|-754.915161| +304: Not an error +464/578 Test #304: plm-reg-itk-demons-check-2 ............ Passed 0.08 sec +306: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-diff.stdout.txt +306: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) +306: -- LOWER_THRESH is 31.2 +306: -- UPPER_THRESH is 31.3 +306: -- PARSED VALUE=|VF_MAX = 102.433 VF_AVG = 31.2783| +306: -- PARSED_VALUE=|31.2783| +306: Not an error +465/578 Test #306: plm-reg-itk-demons-diff-check-1 ....... Passed 0.19 sec +308: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-logd.stdout.txt +308: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) +308: -- LOWER_THRESH is 32.65 +308: -- UPPER_THRESH is 32.75 +308: -- PARSED VALUE=|VF_MAX = 112.668 VF_AVG = 32.7138| +308: -- PARSED_VALUE=|32.7138| +308: Not an error +466/578 Test #308: plm-reg-itk-demons-logd-check-1 ....... Passed 0.19 sec +310: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-itk-demons-sym-logd.stdout.txt +310: -- REGEX is VF_AVG +[^ ] +([-0-9.]*) +310: -- LOWER_THRESH is 31.85 +310: -- UPPER_THRESH is 35.95 +310: -- PARSED VALUE=|VF_MAX = 109.365 VF_AVG = 31.9237| +310: -- PARSED_VALUE=|31.9237| +310: Not an error +467/578 Test #310: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.19 sec +313: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-c-stats.stdout.txt +313: -- REGEX is AVE *([-0-9.]*) +313: -- LOWER_THRESH is -746.0 +313: -- UPPER_THRESH is -744.5 +313: -- PARSED VALUE=|MIN -999.988647 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| +313: -- PARSED_VALUE=|-745.347717| +313: Not an error +316: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-g-stats.stdout.txt +316: -- REGEX is AVE *([-0-9.]*) +316: -- LOWER_THRESH is -746.0 +316: -- UPPER_THRESH is -744.5 +316: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| +316: -- PARSED_VALUE=|-745.347717| +316: Not an error 319: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-h-stats.stdout.txt 319: -- REGEX is AVE *([-0-9.]*) 319: -- LOWER_THRESH is -746.0 @@ -20826,6 +20980,13 @@ 319: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| 319: -- PARSED_VALUE=|-745.347717| 319: Not an error +322: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-i-stats.stdout.txt +322: -- REGEX is AVE *([-0-9.]*) +322: -- LOWER_THRESH is -746.0 +322: -- UPPER_THRESH is -744.5 +322: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| +322: -- PARSED_VALUE=|-745.347717| +322: Not an error 325: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-k-stats.stdout.txt 325: -- REGEX is AVE *([-0-9.]*) 325: -- LOWER_THRESH is -746.0 @@ -20849,6 +21010,11 @@ 334: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 334: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-q-img.mha 334: EXPECTED_ERRNO is +334: RETVAL: 0 +334: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 +334: +334: STDERR: +334: Not an error 336: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 336: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-mse-r-img.mha 336: EXPECTED_ERRNO is @@ -20873,55 +21039,6 @@ 345: -- PARSED VALUE=|MIN -998.614563 AVE -113.473007 MAX -0.004266 NONZERO 54872 NUMVOX 54872| 345: -- PARSED_VALUE=|-113.473007| 345: Not an error -469/578 Test #319: plm-bsp-mse-h-check ................... Passed 0.13 sec -470/578 Test #322: plm-bsp-mse-i-check ................... Passed 0.11 sec -471/578 Test #325: plm-bsp-mse-k-check ................... Passed 0.11 sec -472/578 Test #328: plm-bsp-mse-l-check ................... Passed 0.10 sec -473/578 Test #339: plm-bsp-mi-c-check .................... Passed 0.07 sec -474/578 Test #342: plm-bsp-mi-c-2-check .................. Passed 0.06 sec -475/578 Test #345: plm-bsp-mi-k-check .................... Passed 0.05 sec -test 355 - Start 355: plm-bsp-resume-stats - -355: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-resume-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-resume-img.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -355: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -355: Test timeout computed to be: 1500 -test 357 - Start 357: plm-bsp-logfile-check - -357: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-logfile-logfile.txt" "-DREGEX=\[.*, 5] MSE *([-0-9.]*)" "-DLOWER_THRESH=281.5" "-DUPPER_THRESH=282.5" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -357: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -357: Test timeout computed to be: 1500 -test 360 - Start 360: plm-bsp-ushort-check - -360: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=106.6" "-DUPPER_THRESH=107.6" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -360: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -360: Test timeout computed to be: 1500 -test 363 - Start 363: plm-bsp-double-check - -363: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=107.6" "-DUPPER_THRESH=108.6" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -363: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -363: Test timeout computed to be: 1500 -test 364 - Start 364: plm-bsp-itk-output - -364: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-itk-output" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-itk-output.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -364: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -364: Test timeout computed to be: 1500 -test 367 - Start 367: plm-bsp-char-output-check - -367: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt" "-DREGEX=MIN *([-0-9.]*)" "-DLOWER_THRESH=-128.1" "-DUPPER_THRESH=-127.9" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -367: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -367: Test timeout computed to be: 1500 -test 371 - Start 371: plm-bsp-regularize-none-check - -371: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.31" "-DUPPER_THRESH=0.32" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -371: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -371: Test timeout computed to be: 1500 348: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-gm-k-stats.stdout.txt 348: -- REGEX is AVE *([-0-9.]*) 348: -- LOWER_THRESH is -122.5 @@ -20946,7 +21063,7 @@ 357: -- REGEX is \[.*, 5] MSE *([-0-9.]*) 357: -- LOWER_THRESH is 281.5 357: -- UPPER_THRESH is 282.5 -357: -- PARSED VALUE=|[ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.028 s ]| +357: -- PARSED VALUE=|[ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.022 s ]| 357: -- PARSED_VALUE=|282.038| 357: Not an error 360: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-ushort-stats.stdout.txt @@ -20956,50 +21073,6 @@ 360: -- PARSED VALUE=|MIN 0.000000 AVE 107.313034 MAX 997.000000 NONZERO 44294 NUMVOX 54872| 360: -- PARSED_VALUE=|107.313034| 360: Not an error -476/578 Test #348: plm-bsp-gm-k-check .................... Passed 0.13 sec -477/578 Test #353: plm-bsp-openmp-check .................. Passed 0.11 sec -478/578 Test #357: plm-bsp-logfile-check ................. Passed 0.08 sec -test 374 - Start 374: plm-bsp-regularize-analytic-check - -374: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-analytic-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.415" "-DUPPER_THRESH=0.425" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -374: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -374: Test timeout computed to be: 1500 -test 377 - Start 377: plm-bsp-regularize-numeric-check - -377: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt" "-DREGEX=MINJAC *([-0-9.]*)" "-DLOWER_THRESH=0.440" "-DUPPER_THRESH=0.445" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -377: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -377: Test timeout computed to be: 1500 -test 378 - Start 378: plm-bsp-landmark-a - -378: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-bsp-landmark-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -378: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -378: Test timeout computed to be: 1500 -479/578 Test #360: plm-bsp-ushort-check .................. Passed 0.12 sec -364: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -364: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-itk-output.txt -364: EXPECTED_ERRNO is -281: RETVAL: 0 -281: STDOUT: plastimatch version 1.9.4 -281: Usage: plastimatch command [options] -281: Commands: -281: add adjust average bbox boundary -281: crop compare compose convert dice -281: diff dmap dose drr dvh -281: fdk fill filter gamma header -281: intersect jacobian lm-warp mabs mask -281: maximum ml-convert multiply probe register -281: resample scale segment sift stats -281: synth synth-vf threshold thumbnail union -281: warp wed xf-convert xf-invert -281: -281: For detailed usage of a specific command, type: -281: plastimatch command -281: -281: STDERR: -281: Not an error 363: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-double-stats.stdout.txt 363: -- REGEX is AVE *([-0-9.]*) 363: -- LOWER_THRESH is 107.6 @@ -21007,6 +21080,9 @@ 363: -- PARSED VALUE=|MIN 0.000000 AVE 108.147682 MAX 998.045227 NONZERO 46833 NUMVOX 54872| 363: -- PARSED_VALUE=|108.147682| 363: Not an error +364: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +364: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/plm-bsp-itk-output.txt +364: EXPECTED_ERRNO is 367: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-char-output-stats.stdout.txt 367: -- REGEX is MIN *([-0-9.]*) 367: -- LOWER_THRESH is -128.1 @@ -21014,12 +21090,6 @@ 367: -- PARSED VALUE=|MIN -128.000000 AVE -127.132690 MAX 0.000000 NONZERO 54608 NUMVOX 54872| 367: -- PARSED_VALUE=|-128.000000| 367: Not an error -test 381 - Start 381: plm-bsp-landmark-b-check - -381: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -381: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -381: Test timeout computed to be: 1500 371: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-none-stats.stdout.txt 371: -- REGEX is MINJAC *([-0-9.]*) 371: -- LOWER_THRESH is 0.31 @@ -21034,27 +21104,6 @@ 374: -- PARSED VALUE=|Jacobian: MINJAC 0.419027 MAXJAC 1.04996| 374: -- PARSED_VALUE=|0.419027| 374: Not an error -480/578 Test #281: plm-usage ............................. Passed 0.41 sec -481/578 Test #363: plm-bsp-double-check .................. Passed 0.12 sec -482/578 Test #367: plm-bsp-char-output-check ............. Passed 0.09 sec -test 384 - Start 384: plm-bsp-landmark-c-check - -384: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -384: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -384: Test timeout computed to be: 1500 -test 387 - Start 387: plm-bsp-landmark-d-check - -387: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -387: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -387: Test timeout computed to be: 1500 -test 390 - Start 390: plm-bsp-landmark-e-check - -390: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-991.5" "-DUPPER_THRESH=-991.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -390: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -390: Test timeout computed to be: 1500 377: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-regularize-numeric-stats.stdout.txt 377: -- REGEX is MINJAC *([-0-9.]*) 377: -- LOWER_THRESH is 0.440 @@ -21065,25 +21114,6 @@ 378: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch 378: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a.txt 378: EXPECTED_ERRNO is -246: RETVAL: 0 -246: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha -246: -246: STDERR: -246: Not an error -483/578 Test #371: plm-bsp-regularize-none-check ......... Passed 0.10 sec -484/578 Test #374: plm-bsp-regularize-analytic-check ..... Passed 0.09 sec -test 393 - Start 393: plm-bsp-dcos-a-check - -393: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -393: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -393: Test timeout computed to be: 1500 -test 396 - Start 396: plm-bsp-dcos-b-check - -396: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-796.8" "-DUPPER_THRESH=-795.8" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -396: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -396: Test timeout computed to be: 1500 381: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-b-stats.stdout.txt 381: -- REGEX is AVE *([-0-9.]*) 381: -- LOWER_THRESH is -991.5 @@ -21091,20 +21121,15 @@ 381: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| 381: -- PARSED_VALUE=|-991.355164| 381: Not an error -244: RETVAL: 0 -244: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha -244: -244: STDERR: -244: Not an error -485/578 Test #246: plm-dmap-c ............................ Passed 0.60 sec -486/578 Test #377: plm-bsp-regularize-numeric-check ...... Passed 0.09 sec -487/578 Test #381: plm-bsp-landmark-b-check .............. Passed 0.05 sec -test 399 - Start 399: plm-bsp-dcos-c-check - -399: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -399: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -399: Test timeout computed to be: 1500 +468/578 Test #313: plm-bsp-mse-c-check ................... Passed 0.20 sec +469/578 Test #316: plm-bsp-mse-g-check ................... Passed 0.20 sec +470/578 Test #319: plm-bsp-mse-h-check ................... Passed 0.19 sec +471/578 Test #353: plm-bsp-openmp-check .................. Passed 0.16 sec +472/578 Test #360: plm-bsp-ushort-check .................. Passed 0.16 sec +473/578 Test #363: plm-bsp-double-check .................. Passed 0.15 sec +474/578 Test #371: plm-bsp-regularize-none-check ......... Passed 0.15 sec +475/578 Test #374: plm-bsp-regularize-analytic-check ..... Passed 0.15 sec +476/578 Test #377: plm-bsp-regularize-numeric-check ...... Passed 0.15 sec test 402 Start 402: plm-bsp-dcos-d-check @@ -21117,31 +21142,6 @@ 405: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-816" "-DUPPER_THRESH=-815" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 405: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 405: Test timeout computed to be: 1500 -387: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt -387: -- REGEX is AVE *([-0-9.]*) -387: -- LOWER_THRESH is -991.5 -387: -- UPPER_THRESH is -991.0 -387: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| -387: -- PARSED_VALUE=|-991.355164| -387: Not an error -384: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt -384: -- REGEX is AVE *([-0-9.]*) -384: -- LOWER_THRESH is -991.5 -384: -- UPPER_THRESH is -991.0 -384: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| -384: -- PARSED_VALUE=|-991.355164| -384: Not an error -390: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt -390: -- REGEX is AVE *([-0-9.]*) -390: -- LOWER_THRESH is -991.5 -390: -- UPPER_THRESH is -991.0 -390: -- PARSED VALUE=|MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872| -390: -- PARSED_VALUE=|-991.396057| -390: Not an error -488/578 Test #244: plm-dmap-a ............................ Passed 0.64 sec -489/578 Test #384: plm-bsp-landmark-c-check .............. Passed 0.07 sec -490/578 Test #387: plm-bsp-landmark-d-check .............. Passed 0.06 sec -491/578 Test #390: plm-bsp-landmark-e-check .............. Passed 0.06 sec test 408 Start 408: plm-bsp-dcos-f-check @@ -21166,76 +21166,6 @@ 417: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-467.1" "-DUPPER_THRESH=-366.9" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 417: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 417: Test timeout computed to be: 1500 -393: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt -393: -- REGEX is AVE *([-0-9.]*) -393: -- LOWER_THRESH is -816 -393: -- UPPER_THRESH is -815 -393: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| -393: -- PARSED_VALUE=|-815.591492| -393: Not an error -399: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt -399: -- REGEX is AVE *([-0-9.]*) -399: -- LOWER_THRESH is -816 -399: -- UPPER_THRESH is -815 -399: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| -399: -- PARSED_VALUE=|-815.591492| -399: Not an error -396: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt -396: -- REGEX is AVE *([-0-9.]*) -396: -- LOWER_THRESH is -796.8 -396: -- UPPER_THRESH is -795.8 -396: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| -396: -- PARSED_VALUE=|-796.376221| -396: Not an error -405: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt -405: -- REGEX is AVE *([-0-9.]*) -405: -- LOWER_THRESH is -816 -405: -- UPPER_THRESH is -815 -405: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| -405: -- PARSED_VALUE=|-815.591492| -405: Not an error -402: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt -402: -- REGEX is AVE *([-0-9.]*) -402: -- LOWER_THRESH is -796.8 -402: -- UPPER_THRESH is -795.8 -402: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| -402: -- PARSED_VALUE=|-796.376221| -402: Not an error -205: RETVAL: 0 -205: STDOUT: Trying to load ss_list: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/donut-1-ss-list.txt -205: Setting PIH from M_IMG -205: PIH is: -205: Origin = -25.0000 -25.0000 -25.0000 -205: Size = 38 38 38 -205: Spacing = 1.3158 1.3158 1.3158 -205: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -205: Rt_study_warp: Convert ss_img to cxt. -205: Doing extraction -205: Rt_study_warp: Apply dicom_dir. -205: Rt_study_warp: Set geometry from PIH. -205: Rt_study_warp: Set rasterization geometry. -205: rast_dim = 512 512 14 -205: rast_offset = -10.3618 -10.3618 -9.21053 -205: rast_spacing = 0.0404759 0.0404759 1.31579 -205: Rt_study_warp: warp and save ss. -205: Warp_and_save_ss: save_ss_img -205: Rt_study_warp: Save dicom. -205: Keyholizing structure 0. -205: Finished! -205: -205: STDERR: -205: Not an error -408: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-stats.stdout.txt -408: -- REGEX is AVE *([-0-9.]*) -408: -- LOWER_THRESH is -796.8 -408: -- UPPER_THRESH is -795.8 -408: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| -408: -- PARSED_VALUE=|-796.376221| -408: Not an error -492/578 Test #393: plm-bsp-dcos-a-check .................. Passed 0.09 sec -493/578 Test #396: plm-bsp-dcos-b-check .................. Passed 0.08 sec -494/578 Test #399: plm-bsp-dcos-c-check .................. Passed 0.08 sec -495/578 Test #405: plm-bsp-dcos-e-check .................. Passed 0.05 sec test 418 Start 418: plm-reg-roi-a @@ -21260,35 +21190,6 @@ 421: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-roi-d" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 421: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 421: Test timeout computed to be: 1500 -496/578 Test #402: plm-bsp-dcos-d-check .................. Passed 0.11 sec -411: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stats.stdout.txt -411: -- REGEX is Mean: *([-0-9.]*) -411: -- LOWER_THRESH is -22 -411: -- UPPER_THRESH is -18 -411: -- PARSED VALUE=|Mean: -20.000 -0.000 -0.000| -411: -- PARSED_VALUE=|-20.000| -411: Not an error -414: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt -414: -- REGEX is AVE *([-0-9.]*) -414: -- LOWER_THRESH is -987 -414: -- UPPER_THRESH is -984 -414: -- PARSED VALUE=|MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872| -414: -- PARSED_VALUE=|-985.762146| -414: Not an error -417: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt -417: -- REGEX is AVE *([-0-9.]*) -417: -- LOWER_THRESH is -467.1 -417: -- UPPER_THRESH is -366.9 -417: -- PARSED VALUE=|MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872| -417: -- PARSED_VALUE=|-467.031616| -417: Not an error -418: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -418: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt -418: EXPECTED_ERRNO is -497/578 Test #205: plm-convert-dicom-donut-c ............. Passed 0.88 sec -498/578 Test #408: plm-bsp-dcos-f-check .................. Passed 0.08 sec -499/578 Test #411: plm-reg-multi-a-check ................. Passed 0.07 sec -500/578 Test #414: plm-reg-multi-b-check ................. Passed 0.06 sec test 422 Start 422: plm-reg-roi-e @@ -21307,6 +21208,137 @@ 426: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-491.0" "-DUPPER_THRESH=-490.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 426: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 426: Test timeout computed to be: 1500 +477/578 Test #322: plm-bsp-mse-i-check ................... Passed 0.21 sec +478/578 Test #325: plm-bsp-mse-k-check ................... Passed 0.21 sec +479/578 Test #328: plm-bsp-mse-l-check ................... Passed 0.21 sec +480/578 Test #334: plm-bsp-mse-q-stats ................... Passed 0.20 sec +481/578 Test #339: plm-bsp-mi-c-check .................... Passed 0.20 sec +482/578 Test #342: plm-bsp-mi-c-2-check .................. Passed 0.20 sec +483/578 Test #345: plm-bsp-mi-k-check .................... Passed 0.20 sec +484/578 Test #348: plm-bsp-gm-k-check .................... Passed 0.19 sec +485/578 Test #357: plm-bsp-logfile-check ................. Passed 0.19 sec +486/578 Test #367: plm-bsp-char-output-check ............. Passed 0.18 sec +487/578 Test #381: plm-bsp-landmark-b-check .............. Passed 0.17 sec +384: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-c-stats.stdout.txt +384: -- REGEX is AVE *([-0-9.]*) +384: -- LOWER_THRESH is -991.5 +384: -- UPPER_THRESH is -991.0 +384: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| +384: -- PARSED_VALUE=|-991.355164| +384: Not an error +488/578 Test #384: plm-bsp-landmark-c-check .............. Passed 0.17 sec +387: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-d-stats.stdout.txt +387: -- REGEX is AVE *([-0-9.]*) +387: -- LOWER_THRESH is -991.5 +387: -- UPPER_THRESH is -991.0 +387: -- PARSED VALUE=|MIN -1000.000183 AVE -991.355164 MAX 0.000000 NONZERO 54488 NUMVOX 54872| +387: -- PARSED_VALUE=|-991.355164| +387: Not an error +489/578 Test #387: plm-bsp-landmark-d-check .............. Passed 0.17 sec +390: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-e-stats.stdout.txt +390: -- REGEX is AVE *([-0-9.]*) +390: -- LOWER_THRESH is -991.5 +390: -- UPPER_THRESH is -991.0 +390: -- PARSED VALUE=|MIN -1000.000183 AVE -991.396057 MAX 0.000000 NONZERO 54488 NUMVOX 54872| +390: -- PARSED_VALUE=|-991.396057| +390: Not an error +490/578 Test #390: plm-bsp-landmark-e-check .............. Passed 0.16 sec +393: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-a-stats.stdout.txt +393: -- REGEX is AVE *([-0-9.]*) +393: -- LOWER_THRESH is -816 +393: -- UPPER_THRESH is -815 +393: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| +393: -- PARSED_VALUE=|-815.591492| +393: Not an error +491/578 Test #393: plm-bsp-dcos-a-check .................. Passed 0.16 sec +396: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-b-stats.stdout.txt +396: -- REGEX is AVE *([-0-9.]*) +396: -- LOWER_THRESH is -796.8 +396: -- UPPER_THRESH is -795.8 +396: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| +396: -- PARSED_VALUE=|-796.376221| +396: Not an error +492/578 Test #396: plm-bsp-dcos-b-check .................. Passed 0.16 sec +399: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-c-stats.stdout.txt +399: -- REGEX is AVE *([-0-9.]*) +399: -- LOWER_THRESH is -816 +399: -- UPPER_THRESH is -815 +399: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| +399: -- PARSED_VALUE=|-815.591492| +399: Not an error +493/578 Test #399: plm-bsp-dcos-c-check .................. Passed 0.16 sec +281: RETVAL: 0 +281: STDOUT: plastimatch version 1.9.4 +281: Usage: plastimatch command [options] +281: Commands: +281: add adjust average bbox boundary +281: crop compare compose convert dice +281: diff dmap dose drr dvh +281: fdk fill filter gamma header +281: intersect jacobian lm-warp mabs mask +281: maximum ml-convert multiply probe register +281: resample scale segment sift stats +281: synth synth-vf threshold thumbnail union +281: warp wed xf-convert xf-invert +281: +281: For detailed usage of a specific command, type: +281: plastimatch command +281: +281: STDERR: +281: Not an error +494/578 Test #281: plm-usage ............................. Passed 0.25 sec +244: RETVAL: 0 +244: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-a.mha +244: +244: STDERR: +244: Not an error +246: RETVAL: 0 +246: STDOUT: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-c.mha +246: +246: STDERR: +246: Not an error +402: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-d-stats.stdout.txt +402: -- REGEX is AVE *([-0-9.]*) +402: -- LOWER_THRESH is -796.8 +402: -- UPPER_THRESH is -795.8 +402: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| +402: -- PARSED_VALUE=|-796.376221| +402: Not an error +405: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-e-stats.stdout.txt +405: -- REGEX is AVE *([-0-9.]*) +405: -- LOWER_THRESH is -816 +405: -- UPPER_THRESH is -815 +405: -- PARSED VALUE=|MIN -1000.000183 AVE -815.591492 MAX 0.000000 NONZERO 44935 NUMVOX 54872| +405: -- PARSED_VALUE=|-815.591492| +405: Not an error +408: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-dcos-f-stats.stdout.txt +408: -- REGEX is AVE *([-0-9.]*) +408: -- LOWER_THRESH is -796.8 +408: -- UPPER_THRESH is -795.8 +408: -- PARSED VALUE=|MIN -1000.000183 AVE -796.376221 MAX 0.000000 NONZERO 43813 NUMVOX 54872| +408: -- PARSED_VALUE=|-796.376221| +408: Not an error +411: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-a-stats.stdout.txt +411: -- REGEX is Mean: *([-0-9.]*) +411: -- LOWER_THRESH is -22 +411: -- UPPER_THRESH is -18 +411: -- PARSED VALUE=|Mean: -20.000 -0.000 -0.000| +411: -- PARSED_VALUE=|-20.000| +411: Not an error +414: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-multi-b-stats.stdout.txt +414: -- REGEX is AVE *([-0-9.]*) +414: -- LOWER_THRESH is -987 +414: -- UPPER_THRESH is -984 +414: -- PARSED VALUE=|MIN -1000.000183 AVE -985.762146 MAX 0.000000 NONZERO 54224 NUMVOX 54872| +414: -- PARSED_VALUE=|-985.762146| +414: Not an error +495/578 Test #244: plm-dmap-a ............................ Passed 0.30 sec +496/578 Test #246: plm-dmap-c ............................ Passed 0.28 sec +497/578 Test #402: plm-bsp-dcos-d-check .................. Passed 0.04 sec +498/578 Test #405: plm-bsp-dcos-e-check .................. Passed 0.03 sec +499/578 Test #408: plm-bsp-dcos-f-check .................. Passed 0.03 sec +500/578 Test #411: plm-reg-multi-a-check ................. Passed 0.03 sec +501/578 Test #414: plm-reg-multi-b-check ................. Passed 0.03 sec test 429 Start 429: plm-reg-trans-a-check @@ -21319,45 +21351,6 @@ 432: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-661.75" "-DUPPER_THRESH=-661.65" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 432: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 432: Test timeout computed to be: 1500 -420: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -420: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c.txt -420: EXPECTED_ERRNO is -332: RETVAL: 0 -332: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 -332: -332: STDERR: -332: Not an error -330: RETVAL: 0 -330: STDOUT: MIN -999.989990 AVE -743.121460 MAX 0.000000 NONZERO 46674 NUMVOX 54872 -330: -330: STDERR: -330: Not an error -421: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -421: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt -421: EXPECTED_ERRNO is -419: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -419: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt -419: EXPECTED_ERRNO is -336: RETVAL: 0 -336: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 -336: -336: STDERR: -336: Not an error -350: RETVAL: 0 -350: STDOUT: MIN -999.995789 AVE -886.449097 MAX -1.453729 NONZERO 54872 NUMVOX 54872 -350: -350: STDERR: -350: Not an error -422: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -422: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e.txt -422: EXPECTED_ERRNO is -423: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -423: PARMS is register;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a.txt -423: EXPECTED_ERRNO is -501/578 Test #330: plm-bsp-mse-o-stats ................... Passed 0.47 sec -502/578 Test #332: plm-bsp-mse-p-stats ................... Passed 0.46 sec -503/578 Test #336: plm-bsp-mse-r-stats ................... Passed 0.45 sec -504/578 Test #417: plm-reg-dv-itk-translation-check ...... Passed 0.11 sec test 435 Start 435: plm-reg-trans-mi-a-check @@ -21382,45 +21375,6 @@ 442: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-reg-point-dmap-a" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 442: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 442: Test timeout computed to be: 1500 -505/578 Test #350: plm-bsp-sm-multi-a-stats .............. Passed 0.45 sec -334: RETVAL: 0 -334: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 -334: -334: STDERR: -334: Not an error -426: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt -426: -- REGEX is AVE *([-0-9.]*) -426: -- LOWER_THRESH is -491.0 -426: -- UPPER_THRESH is -490.0 -426: -- PARSED VALUE=|MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872| -426: -- PARSED_VALUE=|-490.647552| -426: Not an error -432: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt -432: -- REGEX is AVE *([-0-9.]*) -432: -- LOWER_THRESH is -661.75 -432: -- UPPER_THRESH is -661.65 -432: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| -432: -- PARSED_VALUE=|-661.690491| -432: Not an error -429: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a-stats.stdout.txt -429: -- REGEX is AVE *([-0-9.]*) -429: -- LOWER_THRESH is -661.75 -429: -- UPPER_THRESH is -661.65 -429: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| -429: -- PARSED_VALUE=|-661.690491| -429: Not an error -435: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a-stats.stdout.txt -435: -- REGEX is AVE *([-0-9.]*) -435: -- LOWER_THRESH is -612.75 -435: -- UPPER_THRESH is -612.60 -435: -- PARSED VALUE=|MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872| -435: -- PARSED_VALUE=|-612.681030| -435: Not an error -506/578 Test #334: plm-bsp-mse-q-stats ................... Passed 0.50 sec -507/578 Test #426: plm-reg-process-a-check ............... Passed 0.08 sec -508/578 Test #429: plm-reg-trans-a-check ................. Passed 0.07 sec -509/578 Test #432: plm-reg-trans-b-check ................. Passed 0.06 sec -510/578 Test #435: plm-reg-trans-mi-a-check .............. Passed 0.05 sec test 445 Start 445: plm-compose-a-warp @@ -21457,42 +21411,6 @@ 455: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=12.5" "-DUPPER_THRESH=12.6" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 455: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 455: Test timeout computed to be: 1500 -438: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt -438: -- REGEX is AVE *([-0-9.]*) -438: -- LOWER_THRESH is -597.6 -438: -- UPPER_THRESH is -597.5 -438: -- PARSED VALUE=|MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872| -438: -- PARSED_VALUE=|-597.535889| -438: Not an error -441: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt -441: -- REGEX is AVE *([-0-9.]*) -441: -- LOWER_THRESH is -597.5 -441: -- UPPER_THRESH is -597.4 -441: -- PARSED VALUE=|MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872| -441: -- PARSED_VALUE=|-597.450806| -441: Not an error -442: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -442: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt -442: EXPECTED_ERRNO is -355: RETVAL: 0 -355: STDOUT: MIN -999.977539 AVE -731.734009 MAX 0.000000 NONZERO 46415 NUMVOX 54872 -355: -355: STDERR: -355: Not an error -445: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -445: PARMS is warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha -445: EXPECTED_ERRNO is -447: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-stats.stdout.txt -447: -- REGEX is Mean: *([-0-9.]*) -447: -- LOWER_THRESH is 13.75 -447: -- UPPER_THRESH is 13.85 -447: -- PARSED VALUE=|Mean: 13.794 -0.035 -0.034| -447: -- PARSED_VALUE=|13.794| -447: Not an error -511/578 Test #355: plm-bsp-resume-stats .................. Passed 0.51 sec -512/578 Test #438: plm-reg-autores-a-check ............... Passed 0.12 sec -513/578 Test #441: plm-reg-autores-b-check ............... Passed 0.12 sec -514/578 Test #447: plm-compose-a-check ................... Passed 0.09 sec test 458 Start 458: plm-resample-a-check @@ -21517,70 +21435,18 @@ 467: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-3.735" "-DUPPER_THRESH=-3.730" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 467: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 467: Test timeout computed to be: 1500 -451: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-stats.stdout.txt -451: -- REGEX is Mean: *([-0-9.]*) -451: -- LOWER_THRESH is 13.75 -451: -- UPPER_THRESH is 13.85 -451: -- PARSED VALUE=|Mean: 13.794 -0.035 -0.034| -451: -- PARSED_VALUE=|13.794| -451: Not an error -455: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt -455: -- REGEX is Mean: *([-0-9.]*) -455: -- LOWER_THRESH is 12.5 -455: -- UPPER_THRESH is 12.6 -455: -- PARSED VALUE=|Mean: 12.523 -0.008 -0.008| -455: -- PARSED_VALUE=|12.523| -455: Not an error -449: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -449: PARMS is warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha -449: EXPECTED_ERRNO is -515/578 Test #451: plm-compose-b-check ................... Passed 0.09 sec test 470 Start 470: plm-scale-vf-a-check 470: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=4.000" "-DUPPER_THRESH=4.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 470: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 470: Test timeout computed to be: 1500 -453: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -453: PARMS is warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha -453: EXPECTED_ERRNO is -461: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt -461: -- REGEX is AVE *([-0-9.]*) -461: -- LOWER_THRESH is -879.0 -461: -- UPPER_THRESH is -878.0 -461: -- PARSED VALUE=|MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000| -461: -- PARSED_VALUE=|-878.621277| -461: Not an error -516/578 Test #455: plm-compose-c-check ................... Passed 0.06 sec test 476 Start 476: plm-thumbnail-a-check 476: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=76.85" "-DUPPER_THRESH=76.95" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 476: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 476: Test timeout computed to be: 1500 -458: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt -458: -- REGEX is AVE *([-0-9.]*) -458: -- LOWER_THRESH is -879.0 -458: -- UPPER_THRESH is -878.0 -458: -- PARSED VALUE=|MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859| -458: -- PARSED_VALUE=|-878.686035| -458: Not an error -467: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt -467: -- REGEX is AVE *([-0-9.]*) -467: -- LOWER_THRESH is -3.735 -467: -- UPPER_THRESH is -3.730 -467: -- PARSED VALUE=|MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872| -467: -- PARSED_VALUE=|-3.732322| -467: Not an error -464: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt -464: -- REGEX is Mean: *([-0-9.]*) -464: -- LOWER_THRESH is 6.67 -464: -- UPPER_THRESH is 6.74 -464: -- PARSED VALUE=|Mean: 6.707 -0.405 -0.405| -464: -- PARSED_VALUE=|6.707| -464: Not an error -517/578 Test #461: plm-resample-b-check .................. Passed 0.05 sec -518/578 Test #467: plm-scale-a-check ..................... Passed 0.04 sec test 479 Start 479: plm-thumbnail-b-check @@ -21593,6 +21459,150 @@ 482: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=8.1" "-DUPPER_THRESH=8.3" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 482: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 482: Test timeout computed to be: 1500 +test 485 + Start 485: plm-intersect-check + +485: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=729" "-DUPPER_THRESH=729" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +485: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +485: Test timeout computed to be: 1500 +test 488 + Start 488: plm-union-check + +488: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1271" "-DUPPER_THRESH=1271" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +488: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +488: Test timeout computed to be: 1500 +test 491 + Start 491: plm-threshold-a-check + +491: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.306" "-DUPPER_THRESH=0.308" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +491: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +491: Test timeout computed to be: 1500 +test 494 + Start 494: plm-threshold-b-check + +494: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.670" "-DUPPER_THRESH=0.672" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +494: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +494: Test timeout computed to be: 1500 +test 497 + Start 497: plm-threshold-c-check + +497: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1206" "-DUPPER_THRESH=1206" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +497: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +497: Test timeout computed to be: 1500 +418: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +418: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a.txt +418: EXPECTED_ERRNO is +417: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-dv-itk-translation-stats.stdout.txt +417: -- REGEX is AVE *([-0-9.]*) +417: -- LOWER_THRESH is -467.1 +417: -- UPPER_THRESH is -366.9 +417: -- PARSED VALUE=|MIN -999.914246 AVE -467.031616 MAX 1000.000000 NONZERO 54872 NUMVOX 54872| +417: -- PARSED_VALUE=|-467.031616| +417: Not an error +502/578 Test #417: plm-reg-dv-itk-translation-check ...... Passed 0.09 sec +419: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +419: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b.txt +419: EXPECTED_ERRNO is +420: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +420: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c.txt +420: EXPECTED_ERRNO is +421: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +421: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d.txt +421: EXPECTED_ERRNO is +355: RETVAL: 0 +355: STDOUT: MIN -999.977539 AVE -731.734009 MAX 0.000000 NONZERO 46415 NUMVOX 54872 +355: +355: STDERR: +355: Not an error +503/578 Test #355: plm-bsp-resume-stats .................. Passed 0.26 sec +422: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +422: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e.txt +422: EXPECTED_ERRNO is +350: RETVAL: 0 +350: STDOUT: MIN -999.995789 AVE -886.449097 MAX -1.453729 NONZERO 54872 NUMVOX 54872 +350: +350: STDERR: +350: Not an error +504/578 Test #350: plm-bsp-sm-multi-a-stats .............. Passed 0.26 sec +336: RETVAL: 0 +336: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 +336: +336: STDERR: +336: Not an error +364: RETVAL: 0 +364: STDOUT: Loading fixed image [0]: gauss-1.mha +364: Loading moving image [0]: gauss-2.mha +364: Launching registration worker thread +364: Inside registration worker thread +364: Doing registration stage +364: [1] xf_in->m_type = 0, xf_out->m_type = 0 +364: RESAMPLE 1 1: (2 2 2), (2 2 2) +364: RESAMPLE 1 1: (2 2 2), (2 2 2) +364: volume_calc_grad complete. +364: bspline_xform_initialize +364: rdims = (2,2,2) +364: vox_per_rgn = (11,11,11) +364: cdims = (5 5 5) +364: Algorithm flavor = h +364: Threading = 0 +364: >> Checking JH allocation +364: BSPLINE PARMS +364: max_its = 5 +364: max_feval = 5 +364: BSPLINE XFORM HEADER +364: vox_per_rgn = 11 11 11 +364: roi_offset = 0 0 0 +364: roi_dim = 19 19 19 +364: img_dc = 1 0 0 0 1 0 0 0 1 +364: BST METRICS +364: MET 110100 MSE 1.000000 +364: Setting nmax, mmax = 375 21 +364: >>> START +364: This problem is unconstrained. +364: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.002 s ] +364: CMIN 0.00 CAVG 0.00 CMAX 0.00 +364: LSD 0.00 +364: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.002 s ] +364: CMIN -0.07 CAVG 0.01 CMAX 0.68 +364: LSD 1.00 +364: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.002 s ] +364: CMIN -0.35 CAVG 0.05 CMAX 3.40 +364: LSD 5.00 +364: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.002 s ] +364: CMIN -1.48 CAVG 0.20 CMAX 14.26 +364: LSD 21.00 +364: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.002 s ] +364: CMIN -1.74 CAVG 0.44 CMAX 32.50 +364: LSD 27.95 +364: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.002 s ] +364: CMIN -1.73 CAVG 0.34 CMAX 23.99 +364: LSD 13.11 +364: [2] xf_out->m_type = 9, xf_in->m_type = 0 +364: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +364: bspline_xform_initialize +364: rdims = (2,2,2) +364: vox_per_rgn = (22,22,22) +364: cdims = (5 5 5) +364: ** Registration worker thread finished. +364: Writing transformation ... +364: Load: 0.0303531 +364: Run: 0.016932 +364: Save: 0.004848 +364: Total: 0.0521331 +364: Finished! +364: +364: STDERR: +364: Not an error +423: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +423: PARMS is register;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a.txt +423: EXPECTED_ERRNO is +426: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-process-a-stats.stdout.txt +426: -- REGEX is AVE *([-0-9.]*) +426: -- LOWER_THRESH is -491.0 +426: -- UPPER_THRESH is -490.0 +426: -- PARSED VALUE=|MIN -500.000000 AVE -490.647552 MAX 0.000000 NONZERO 54871 NUMVOX 54872| +426: -- PARSED_VALUE=|-490.647552| +426: Not an error 378: RETVAL: 0 378: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha 378: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha @@ -21641,27 +21651,27 @@ 378: Setting nmax, mmax = 1536 41 378: >>> START 378: This problem is unconstrained. -378: [ 0, 0] SCORE 3407.677 NV 6859 GM 84.848 GN 25 [ 0.004 s ] +378: [ 0, 0] SCORE 3407.677 NV 6859 GM 84.848 GN 25 [ 0.002 s ] 378: MSE 2961.435 LM 446.242 378: CMIN 0.00 CAVG 0.00 CMAX 0.00 378: LSD 0.00 -378: [ 0, 1] SCORE 3361.326 NV 6859 GM 83.763 GN 24.7 [ 0.004 s ] +378: [ 0, 1] SCORE 3361.326 NV 6859 GM 83.763 GN 24.7 [ 0.002 s ] 378: MSE 2923.708 LM 437.617 378: CMIN -0.50 CAVG -0.00 CMAX 0.07 378: LSD 1.00 -378: [ 0, 2] SCORE 3181.879 NV 6859 GM 79.422 GN 23.5 [ 0.004 s ] +378: [ 0, 2] SCORE 3181.879 NV 6859 GM 79.422 GN 23.5 [ 0.002 s ] 378: MSE 2777.757 LM 404.122 378: CMIN -2.48 CAVG -0.01 CMAX 0.34 378: LSD 5.00 -378: [ 0, 3] SCORE 2557.441 NV 6859 GM 62.038 GN 18.9 [ 0.004 s ] +378: [ 0, 3] SCORE 2557.441 NV 6859 GM 62.038 GN 18.9 [ 0.002 s ] 378: MSE 2271.265 LM 286.176 378: CMIN -10.41 CAVG -0.05 CMAX 1.44 378: LSD 21.00 -378: [ 1, 4] SCORE 1117.771 NV 6859 GM -1.799 GN 6.83 [ 0.004 s ] +378: [ 1, 4] SCORE 1117.771 NV 6859 GM -1.799 GN 6.83 [ 0.002 s ] 378: MSE 1009.222 LM 108.548 378: CMIN -45.97 CAVG -0.19 CMAX 12.05 378: LSD 76.81 -378: [ 2, 5] SCORE 848.407 NV 6859 GM -12.697 GN 4.53 [ 0.004 s ] +378: [ 2, 5] SCORE 848.407 NV 6859 GM -12.697 GN 4.53 [ 0.002 s ] 378: MSE 667.771 LM 180.635 378: CMIN -54.81 CAVG -0.22 CMAX 17.65 378: LSD 34.30 @@ -21695,14 +21705,120 @@ 378: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-warped.fcsv 378: Saving vf... 378: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-landmark-a-vf.mha -378: Load: 0.0590971 -378: Run: 0.034554 -378: Save: 0.075254 -378: Total: 0.168905 +378: Load: 0.0312049 +378: Run: 0.0179529 +378: Save: 0.0218761 +378: Total: 0.071034 378: Finished! 378: 378: STDERR: 378: Not an error +330: RETVAL: 0 +330: STDOUT: MIN -999.989990 AVE -743.121460 MAX 0.000000 NONZERO 46674 NUMVOX 54872 +330: +330: STDERR: +330: Not an error +332: RETVAL: 0 +332: STDOUT: MIN -999.989136 AVE -739.933289 MAX 0.000000 NONZERO 46595 NUMVOX 54872 +332: +332: STDERR: +332: Not an error +429: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-a-stats.stdout.txt +429: -- REGEX is AVE *([-0-9.]*) +429: -- LOWER_THRESH is -661.75 +429: -- UPPER_THRESH is -661.65 +429: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| +429: -- PARSED_VALUE=|-661.690491| +429: Not an error +432: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-b-stats.stdout.txt +432: -- REGEX is AVE *([-0-9.]*) +432: -- LOWER_THRESH is -661.75 +432: -- UPPER_THRESH is -661.65 +432: -- PARSED VALUE=|MIN -999.904663 AVE -661.690491 MAX 0.000000 NONZERO 42439 NUMVOX 54872| +432: -- PARSED_VALUE=|-661.690491| +432: Not an error +435: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-trans-mi-a-stats.stdout.txt +435: -- REGEX is AVE *([-0-9.]*) +435: -- LOWER_THRESH is -612.75 +435: -- UPPER_THRESH is -612.60 +435: -- PARSED VALUE=|MIN -999.826416 AVE -612.681030 MAX 0.000000 NONZERO 39701 NUMVOX 54872| +435: -- PARSED_VALUE=|-612.681030| +435: Not an error +438: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-a-stats.stdout.txt +438: -- REGEX is AVE *([-0-9.]*) +438: -- LOWER_THRESH is -597.6 +438: -- UPPER_THRESH is -597.5 +438: -- PARSED VALUE=|MIN -999.770874 AVE -597.535889 MAX 0.000000 NONZERO 38880 NUMVOX 54872| +438: -- PARSED_VALUE=|-597.535889| +438: Not an error +441: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-autores-b-stats.stdout.txt +441: -- REGEX is AVE *([-0-9.]*) +441: -- LOWER_THRESH is -597.5 +441: -- UPPER_THRESH is -597.4 +441: -- PARSED VALUE=|MIN -999.769348 AVE -597.450806 MAX 0.000000 NONZERO 38880 NUMVOX 54872| +441: -- PARSED_VALUE=|-597.450806| +441: Not an error +442: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +442: PARMS is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a.txt +442: EXPECTED_ERRNO is +445: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +445: PARMS is warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha +445: EXPECTED_ERRNO is +447: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-stats.stdout.txt +447: -- REGEX is Mean: *([-0-9.]*) +447: -- LOWER_THRESH is 13.75 +447: -- UPPER_THRESH is 13.85 +447: -- PARSED VALUE=|Mean: 13.794 -0.035 -0.034| +447: -- PARSED_VALUE=|13.794| +447: Not an error +449: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +449: PARMS is warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha +449: EXPECTED_ERRNO is +451: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-stats.stdout.txt +451: -- REGEX is Mean: *([-0-9.]*) +451: -- LOWER_THRESH is 13.75 +451: -- UPPER_THRESH is 13.85 +451: -- PARSED VALUE=|Mean: 13.794 -0.035 -0.034| +451: -- PARSED_VALUE=|13.794| +451: Not an error +453: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +453: PARMS is warp;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/gauss-5.mha;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha;--output-img;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha +453: EXPECTED_ERRNO is +455: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-stats.stdout.txt +455: -- REGEX is Mean: *([-0-9.]*) +455: -- LOWER_THRESH is 12.5 +455: -- UPPER_THRESH is 12.6 +455: -- PARSED VALUE=|Mean: 12.523 -0.008 -0.008| +455: -- PARSED_VALUE=|12.523| +455: Not an error +458: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-a-stats.stdout.txt +458: -- REGEX is AVE *([-0-9.]*) +458: -- LOWER_THRESH is -879.0 +458: -- UPPER_THRESH is -878.0 +458: -- PARSED VALUE=|MIN -999.857544 AVE -878.686035 MAX -12.873093 NONZERO 6859 NUMVOX 6859| +458: -- PARSED_VALUE=|-878.686035| +458: Not an error +461: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-b-stats.stdout.txt +461: -- REGEX is AVE *([-0-9.]*) +461: -- LOWER_THRESH is -879.0 +461: -- UPPER_THRESH is -878.0 +461: -- PARSED VALUE=|MIN -999.915161 AVE -878.621277 MAX -0.000005 NONZERO 64000 NUMVOX 64000| +461: -- PARSED_VALUE=|-878.621277| +461: Not an error +464: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-resample-c-stats.stdout.txt +464: -- REGEX is Mean: *([-0-9.]*) +464: -- LOWER_THRESH is 6.67 +464: -- UPPER_THRESH is 6.74 +464: -- PARSED VALUE=|Mean: 6.707 -0.405 -0.405| +464: -- PARSED_VALUE=|6.707| +464: Not an error +467: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-a-stats.stdout.txt +467: -- REGEX is AVE *([-0-9.]*) +467: -- LOWER_THRESH is -3.735 +467: -- UPPER_THRESH is -3.730 +467: -- PARSED VALUE=|MIN -400.000000 AVE -3.732322 MAX 0.000000 NONZERO 512 NUMVOX 54872| +467: -- PARSED_VALUE=|-3.732322| +467: Not an error 470: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-scale-vf-a-stats.stdout.txt 470: -- REGEX is Mean: *([-0-9.]*) 470: -- LOWER_THRESH is 4.000 @@ -21710,69 +21826,6 @@ 470: -- PARSED VALUE=|Mean: 4.000 0.000 0.000| 470: -- PARSED_VALUE=|4.000| 470: Not an error -519/578 Test #378: plm-bsp-landmark-a .................... Passed 0.47 sec -520/578 Test #458: plm-resample-a-check .................. Passed 0.08 sec -521/578 Test #464: plm-resample-c-check .................. Passed 0.07 sec -test 485 - Start 485: plm-intersect-check - -485: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=729" "-DUPPER_THRESH=729" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -485: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -485: Test timeout computed to be: 1500 -test 488 - Start 488: plm-union-check - -488: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1271" "-DUPPER_THRESH=1271" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -488: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -488: Test timeout computed to be: 1500 -test 491 - Start 491: plm-threshold-a-check - -491: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.306" "-DUPPER_THRESH=0.308" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -491: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -491: Test timeout computed to be: 1500 -482: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c-stats.stdout.txt -482: -- REGEX is AVE *([-0-9.]*) -482: -- LOWER_THRESH is 8.1 -482: -- UPPER_THRESH is 8.3 -482: -- PARSED VALUE=|MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256| -482: -- PARSED_VALUE=|8.203125| -482: Not an error -476: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt -476: -- REGEX is AVE *([-0-9.]*) -476: -- LOWER_THRESH is 76.85 -476: -- UPPER_THRESH is 76.95 -476: -- PARSED VALUE=|MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256| -476: -- PARSED_VALUE=|76.906250| -476: Not an error -522/578 Test #470: plm-scale-vf-a-check .................. Passed 0.09 sec -523/578 Test #482: plm-thumbnail-c-check ................. Passed 0.05 sec -test 494 - Start 494: plm-threshold-b-check - -494: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.670" "-DUPPER_THRESH=0.672" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -494: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -494: Test timeout computed to be: 1500 -test 497 - Start 497: plm-threshold-c-check - -497: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt" "-DREGEX=NONZERO *([-0-9.]*)" "-DLOWER_THRESH=1206" "-DUPPER_THRESH=1206" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -497: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -497: Test timeout computed to be: 1500 -485: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt -485: -- REGEX is NONZERO *([-0-9.]*) -485: -- LOWER_THRESH is 729 -485: -- UPPER_THRESH is 729 -485: -- PARSED VALUE=|MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872| -485: -- PARSED_VALUE=|729| -485: Not an error -488: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt -488: -- REGEX is NONZERO *([-0-9.]*) -488: -- LOWER_THRESH is 1271 -488: -- UPPER_THRESH is 1271 -488: -- PARSED VALUE=|MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872| -488: -- PARSED_VALUE=|1271| -488: Not an error 479: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-b-stats.stdout.txt 479: -- REGEX is AVE *([-0-9.]*) 479: -- LOWER_THRESH is 0.0 @@ -21780,8 +21833,33 @@ 479: -- PARSED VALUE=|MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 256| 479: -- PARSED_VALUE=|0.000000| 479: Not an error -524/578 Test #476: plm-thumbnail-a-check ................. Passed 0.11 sec -525/578 Test #485: plm-intersect-check ................... Passed 0.07 sec +482: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-c-stats.stdout.txt +482: -- REGEX is AVE *([-0-9.]*) +482: -- LOWER_THRESH is 8.1 +482: -- UPPER_THRESH is 8.3 +482: -- PARSED VALUE=|MIN 0.000000 AVE 8.203125 MAX 119.000000 NONZERO 32 NUMVOX 256| +482: -- PARSED_VALUE=|8.203125| +482: Not an error +505/578 Test #330: plm-bsp-mse-o-stats ................... Passed 0.29 sec +506/578 Test #332: plm-bsp-mse-p-stats ................... Passed 0.28 sec +507/578 Test #336: plm-bsp-mse-r-stats ................... Passed 0.28 sec +508/578 Test #364: plm-bsp-itk-output .................... Passed 0.26 sec +509/578 Test #378: plm-bsp-landmark-a .................... Passed 0.25 sec +510/578 Test #426: plm-reg-process-a-check ............... Passed 0.08 sec +511/578 Test #429: plm-reg-trans-a-check ................. Passed 0.07 sec +512/578 Test #432: plm-reg-trans-b-check ................. Passed 0.07 sec +513/578 Test #435: plm-reg-trans-mi-a-check .............. Passed 0.06 sec +514/578 Test #438: plm-reg-autores-a-check ............... Passed 0.06 sec +515/578 Test #441: plm-reg-autores-b-check ............... Passed 0.06 sec +516/578 Test #447: plm-compose-a-check ................... Passed 0.05 sec +517/578 Test #451: plm-compose-b-check ................... Passed 0.05 sec +518/578 Test #455: plm-compose-c-check ................... Passed 0.04 sec +519/578 Test #458: plm-resample-a-check .................. Passed 0.04 sec +520/578 Test #461: plm-resample-b-check .................. Passed 0.04 sec +521/578 Test #464: plm-resample-c-check .................. Passed 0.04 sec +522/578 Test #467: plm-scale-a-check ..................... Passed 0.04 sec +523/578 Test #470: plm-scale-vf-a-check .................. Passed 0.03 sec +524/578 Test #479: plm-thumbnail-b-check ................. Passed 0.03 sec test 498 Start 498: plm-warp-pointset-a @@ -21794,22 +21872,6 @@ 499: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-warp-pointset-b" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 499: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 499: Test timeout computed to be: 1500 -526/578 Test #488: plm-union-check ....................... Passed 0.08 sec -527/578 Test #479: plm-thumbnail-b-check ................. Passed 0.11 sec -491: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt -491: -- REGEX is AVE *([-0-9.]*) -491: -- LOWER_THRESH is 0.306 -491: -- UPPER_THRESH is 0.308 -491: -- PARSED VALUE=|MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872| -491: -- PARSED_VALUE=|0.306732| -491: Not an error -494: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt -494: -- REGEX is AVE *([-0-9.]*) -494: -- LOWER_THRESH is 0.670 -494: -- UPPER_THRESH is 0.672 -494: -- PARSED VALUE=|MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872| -494: -- PARSED_VALUE=|0.671290| -494: Not an error test 500 Start 500: plm-warp-pointset-c @@ -21822,86 +21884,6 @@ 503: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=5.77" "-DUPPER_THRESH=5.78" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 503: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 503: Test timeout computed to be: 1500 -497: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt -497: -- REGEX is NONZERO *([-0-9.]*) -497: -- LOWER_THRESH is 1206 -497: -- UPPER_THRESH is 1206 -497: -- PARSED VALUE=|MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872| -497: -- PARSED_VALUE=|1206| -497: Not an error -498: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -498: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv -498: EXPECTED_ERRNO is -499: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -499: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt -499: EXPECTED_ERRNO is -364: RETVAL: 0 -364: STDOUT: Loading fixed image [0]: gauss-1.mha -364: Loading moving image [0]: gauss-2.mha -364: Launching registration worker thread -364: Inside registration worker thread -364: Doing registration stage -364: [1] xf_in->m_type = 0, xf_out->m_type = 0 -364: RESAMPLE 1 1: (2 2 2), (2 2 2) -364: RESAMPLE 1 1: (2 2 2), (2 2 2) -364: volume_calc_grad complete. -364: bspline_xform_initialize -364: rdims = (2,2,2) -364: vox_per_rgn = (11,11,11) -364: cdims = (5 5 5) -364: Algorithm flavor = h -364: Threading = 0 -364: >> Checking JH allocation -364: BSPLINE PARMS -364: max_its = 5 -364: max_feval = 5 -364: BSPLINE XFORM HEADER -364: vox_per_rgn = 11 11 11 -364: roi_offset = 0 0 0 -364: roi_dim = 19 19 19 -364: img_dc = 1 0 0 0 1 0 0 0 1 -364: BST METRICS -364: MET 110100 MSE 1.000000 -364: Setting nmax, mmax = 375 21 -364: >>> START -364: This problem is unconstrained. -364: [ 0, 0] MSE 18756.236 NV 6859 GM -2980.067 GN 852 [ 0.012 s ] -364: CMIN 0.00 CAVG 0.00 CMAX 0.00 -364: LSD 0.00 -364: [ 0, 1] MSE 17838.633 NV 6859 GM -2882.393 GN 824 [ 0.004 s ] -364: CMIN -0.07 CAVG 0.01 CMAX 0.68 -364: LSD 1.00 -364: [ 0, 2] MSE 14464.859 NV 6858 GM -2822.149 GN 824 [ 0.012 s ] -364: CMIN -0.35 CAVG 0.05 CMAX 3.40 -364: LSD 5.00 -364: [ 0, 3] MSE 3829.066 NV 6286 GM -1585.570 GN 459 [ 0.004 s ] -364: CMIN -1.48 CAVG 0.20 CMAX 14.26 -364: LSD 21.00 -364: [ 1, 4] MSE 3098.538 NV 5455 GM 1176.092 GN 399 [ 0.012 s ] -364: CMIN -1.74 CAVG 0.44 CMAX 32.50 -364: LSD 27.95 -364: [ 2, 5] MSE 282.038 NV 5851 GM 54.495 GN 43.4 [ 0.004 s ] -364: CMIN -1.73 CAVG 0.34 CMAX 23.99 -364: LSD 13.11 -364: [2] xf_out->m_type = 9, xf_in->m_type = 0 -364: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -364: bspline_xform_initialize -364: rdims = (2,2,2) -364: vox_per_rgn = (22,22,22) -364: cdims = (5 5 5) -364: ** Registration worker thread finished. -364: Writing transformation ... -364: Load: 0.151212 -364: Run: 0.087909 -364: Save: 0.012471 -364: Total: 0.251592 -364: Finished! -364: -364: STDERR: -364: Not an error -528/578 Test #491: plm-threshold-a-check ................. Passed 0.13 sec -529/578 Test #494: plm-threshold-b-check ................. Passed 0.12 sec -530/578 Test #497: plm-threshold-c-check ................. Passed 0.10 sec test 506 Start 506: plm-warp-b-check-1 @@ -21920,114 +21902,42 @@ 511: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=9.2" "-DUPPER_THRESH=9.3" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 511: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 511: Test timeout computed to be: 1500 -503: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt -503: -- REGEX is Mean: *([-0-9.]*) -503: -- LOWER_THRESH is 5.77 -503: -- UPPER_THRESH is 5.78 -503: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| -503: -- PARSED_VALUE=|5.773| -503: Not an error -531/578 Test #364: plm-bsp-itk-output .................... Passed 0.77 sec test 514 Start 514: plm-warp-d-check 514: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=9.2" "-DUPPER_THRESH=9.3" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 514: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 514: Test timeout computed to be: 1500 -508: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt -508: -- REGEX is AVE *([-0-9.]*) -508: -- LOWER_THRESH is -775.7 -508: -- UPPER_THRESH is -775.6 -508: -- PARSED VALUE=|MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872| -508: -- PARSED_VALUE=|-775.668274| -508: Not an error -532/578 Test #503: plm-warp-a-check ...................... Passed 0.12 sec test 517 Start 517: plm-warp-f-check-1 517: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt" "-DREGEX=Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*)" "-DLOWER_THRESH=-0.379" "-DUPPER_THRESH=-0.378" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 517: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 517: Test timeout computed to be: 1500 -533/578 Test #508: plm-warp-b-check-2 .................... Passed 0.10 sec test 520 Start 520: plm-warp-g-check-1 520: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-764.0" "-DUPPER_THRESH=-763.6" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 520: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 520: Test timeout computed to be: 1500 -445: RETVAL: 0 -445: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha) -445: Setting PIH from VF -445: PIH is: -445: Origin = -25.0000 -25.0000 -25.0000 -445: Size = 38 38 38 -445: Spacing = 1.3158 1.3158 1.3158 -445: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -445: Rt_study_warp: Warping m_img -445: plm_warp_itk: xform_to_itk_vf -445: plm_warp_itk: convert_to_itk -445: plm_warp_itk: warping... -445: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha) -445: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha -445: Rt_study_warp: warp and save ss. -445: Finished! -445: -445: STDERR: -445: Not an error -500: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -500: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv -500: EXPECTED_ERRNO is -506: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt -506: -- REGEX is Mean: *([-0-9.]*) -506: -- LOWER_THRESH is 5.77 -506: -- UPPER_THRESH is 5.78 -506: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| -506: -- PARSED_VALUE=|5.773| -506: Not an error -514: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt -514: -- REGEX is AVE *([-0-9.]*) -514: -- LOWER_THRESH is 9.2 -514: -- UPPER_THRESH is 9.3 -514: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| -534/578 Test #445: plm-compose-a-warp .................... Passed 0.49 sec test 523 Start 523: plm-warp-h-check-1 523: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=113.5" "-DUPPER_THRESH=114.0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 523: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 523: Test timeout computed to be: 1500 -514: -- PARSED_VALUE=|9.220003| -514: Not an error -535/578 Test #506: plm-warp-b-check-1 .................... Passed 0.17 sec test 526 Start 526: plm-warp-i-check-1 526: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=114.4" "-DUPPER_THRESH=114.7" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 526: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 526: Test timeout computed to be: 1500 -536/578 Test #514: plm-warp-d-check ...................... Passed 0.12 sec test 529 Start 529: plm-xf-convert-c 529: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-c" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" 529: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 529: Test timeout computed to be: 1500 -520: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt -520: -- REGEX is AVE *([-0-9.]*) -520: -- LOWER_THRESH is -764.0 -520: -- UPPER_THRESH is -763.6 -520: -- PARSED VALUE=|MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872| -520: -- PARSED_VALUE=|-763.820862| -520: Not an error -511: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt -511: -- REGEX is AVE *([-0-9.]*) -511: -- LOWER_THRESH is 9.2 -511: -- UPPER_THRESH is 9.3 -511: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| -511: -- PARSED_VALUE=|9.220003| -511: Not an error -537/578 Test #511: plm-warp-c-check ...................... Passed 0.19 sec -538/578 Test #520: plm-warp-g-check-1 .................... Passed 0.11 sec test 533 Start 533: plm-xf-convert-d-warp-1-check @@ -22040,6 +21950,157 @@ 536: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=-751.0" "-DUPPER_THRESH=-744.8" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" 536: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing 536: Test timeout computed to be: 1500 +test 537 + Start 537: plm-xf-convert-e + +537: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +537: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +537: Test timeout computed to be: 1500 +test 538 + Start 538: plm-xf-convert-f + +538: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-f" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +538: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +538: Test timeout computed to be: 1500 +test 539 + Start 539: plm-xf-convert-g + +539: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-g" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +539: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +539: Test timeout computed to be: 1500 +test 542 + Start 542: plm-xf-convert-h-check + +542: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=20" "-DUPPER_THRESH=20" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +542: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +542: Test timeout computed to be: 1500 +test 545 + Start 545: plm-xf-convert-i-check + +545: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=7.155" "-DUPPER_THRESH=7.165" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +545: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +545: Test timeout computed to be: 1500 +test 548 + Start 548: xf-invert-vf-zero-1-check + +548: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +548: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +548: Test timeout computed to be: 1500 +test 551 + Start 551: xf-invert-vf-trans-1-check + +551: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-10.0" "-DUPPER_THRESH=-9.9" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +551: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +551: Test timeout computed to be: 1500 +test 553 + Start 553: xf-invert-vrs-a-check + +553: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-DREGEX=^Parameters: *(.*)$" "-DMATCH_STRING=0 0 0 -20 0 0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" +553: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +553: Test timeout computed to be: 1500 +525/578 Test #482: plm-thumbnail-c-check ................. Passed 0.08 sec +476: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-thumbnail-a-stats.stdout.txt +476: -- REGEX is AVE *([-0-9.]*) +476: -- LOWER_THRESH is 76.85 +476: -- UPPER_THRESH is 76.95 +476: -- PARSED VALUE=|MIN 0.000000 AVE 76.906250 MAX 255.000000 NONZERO 88 NUMVOX 256| +476: -- PARSED_VALUE=|76.906250| +476: Not an error +526/578 Test #476: plm-thumbnail-a-check ................. Passed 0.28 sec +488: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-union-stats.stdout.txt +488: -- REGEX is NONZERO *([-0-9.]*) +488: -- LOWER_THRESH is 1271 +488: -- UPPER_THRESH is 1271 +488: -- PARSED VALUE=|MIN 0.000000 AVE 0.023163 MAX 1.000000 NONZERO 1271 NUMVOX 54872| +488: -- PARSED_VALUE=|1271| +488: Not an error +527/578 Test #488: plm-union-check ....................... Passed 0.27 sec +485: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-intersect-stats.stdout.txt +485: -- REGEX is NONZERO *([-0-9.]*) +485: -- LOWER_THRESH is 729 +485: -- UPPER_THRESH is 729 +485: -- PARSED VALUE=|MIN 0.000000 AVE 0.013285 MAX 1.000000 NONZERO 729 NUMVOX 54872| +485: -- PARSED_VALUE=|729| +485: Not an error +528/578 Test #485: plm-intersect-check ................... Passed 0.28 sec +491: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-a-stats.stdout.txt +491: -- REGEX is AVE *([-0-9.]*) +491: -- LOWER_THRESH is 0.306 +491: -- UPPER_THRESH is 0.308 +491: -- PARSED VALUE=|MIN 0.000000 AVE 0.306732 MAX 1.000000 NONZERO 16831 NUMVOX 54872| +491: -- PARSED_VALUE=|0.306732| +491: Not an error +529/578 Test #491: plm-threshold-a-check ................. Passed 0.27 sec +494: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-b-stats.stdout.txt +494: -- REGEX is AVE *([-0-9.]*) +494: -- LOWER_THRESH is 0.670 +494: -- UPPER_THRESH is 0.672 +494: -- PARSED VALUE=|MIN 0.000000 AVE 0.671290 MAX 1.000000 NONZERO 36835 NUMVOX 54872| +494: -- PARSED_VALUE=|0.671290| +494: Not an error +497: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-threshold-c-stats.stdout.txt +497: -- REGEX is NONZERO *([-0-9.]*) +497: -- LOWER_THRESH is 1206 +497: -- UPPER_THRESH is 1206 +497: -- PARSED VALUE=|MIN 0.000000 AVE 0.021978 MAX 1.000000 NONZERO 1206 NUMVOX 54872| +497: -- PARSED_VALUE=|1206| +497: Not an error +498: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +498: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv +498: EXPECTED_ERRNO is +499: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +499: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-xf.txt;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt +499: EXPECTED_ERRNO is +499: RETVAL: 0 +499: STDOUT: bspline_xform_initialize +499: rdims = (5,5,5) +499: vox_per_rgn = (8,8,8) +499: cdims = (8 8 8) +499: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt +499: +499: STDERR: +500: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +500: PARMS is warp;--xf;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/landmark-warp-c-vf.mha;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/fiducials-rect-2.fcsv;--output-pointset;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv +500: EXPECTED_ERRNO is +500: RETVAL: 0 +500: STDOUT: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv +500: +500: STDERR: +503: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-a-stats.stdout.txt +503: -- REGEX is Mean: *([-0-9.]*) +503: -- LOWER_THRESH is 5.77 +503: -- UPPER_THRESH is 5.78 +503: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| +503: -- PARSED_VALUE=|5.773| +503: Not an error +506: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-1.stdout.txt +506: -- REGEX is Mean: *([-0-9.]*) +506: -- LOWER_THRESH is 5.77 +506: -- UPPER_THRESH is 5.78 +506: -- PARSED VALUE=|Mean: 5.773 0.002 0.002| +506: -- PARSED_VALUE=|5.773| +506: Not an error +508: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-b-stats-2.stdout.txt +508: -- REGEX is AVE *([-0-9.]*) +508: -- LOWER_THRESH is -775.7 +508: -- UPPER_THRESH is -775.6 +508: -- PARSED VALUE=|MIN -999.876892 AVE -775.668274 MAX 0.000000 NONZERO 49099 NUMVOX 54872| +508: -- PARSED_VALUE=|-775.668274| +508: Not an error +511: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-c-stats.stdout.txt +511: -- REGEX is AVE *([-0-9.]*) +511: -- LOWER_THRESH is 9.2 +511: -- UPPER_THRESH is 9.3 +511: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| +511: -- PARSED_VALUE=|9.220003| +511: Not an error +514: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-d-stats.stdout.txt +514: -- REGEX is AVE *([-0-9.]*) +514: -- LOWER_THRESH is 9.2 +514: -- UPPER_THRESH is 9.3 +514: -- PARSED VALUE=|MIN 0.000000 AVE 9.220003 MAX 255.000000 NONZERO 1984 NUMVOX 54872| +514: -- PARSED_VALUE=|9.220003| +514: Not an error 517: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-f-stats-1.stdout.txt 517: -- REGEX is Direction = *[-0-9.]* *[-0-9.]* *([-0-9.]*) 517: -- LOWER_THRESH is -0.379 @@ -22047,6 +22108,13 @@ 517: -- PARSED VALUE=|Direction = 0.9254 0.0180 -0.3785 0.1632 0.8826 0.4410 0.3420 -0.4698 0.8138| 517: -- PARSED_VALUE=|-0.3785| 517: Not an error +520: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-g-stats-1.stdout.txt +520: -- REGEX is AVE *([-0-9.]*) +520: -- LOWER_THRESH is -764.0 +520: -- UPPER_THRESH is -763.6 +520: -- PARSED VALUE=|MIN -1000.000000 AVE -763.820862 MAX 0.000000 NONZERO 42085 NUMVOX 54872| +520: -- PARSED_VALUE=|-763.820862| +520: Not an error 523: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-h-stats-1.stdout.txt 523: -- REGEX is AVE *([-0-9.]*) 523: -- LOWER_THRESH is 113.5 @@ -22054,20 +22122,6 @@ 523: -- PARSED VALUE=|MIN 0.000000 AVE 113.750511 MAX 996.000000 NONZERO 42867 NUMVOX 54872| 523: -- PARSED_VALUE=|113.750511| 523: Not an error -539/578 Test #517: plm-warp-f-check-1 .................... Passed 0.20 sec -test 537 - Start 537: plm-xf-convert-e - -537: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-e" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -537: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -537: Test timeout computed to be: 1500 -540/578 Test #523: plm-warp-h-check-1 .................... Passed 0.18 sec -test 538 - Start 538: plm-xf-convert-f - -538: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-f" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -538: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -538: Test timeout computed to be: 1500 526: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-i-stats-1.stdout.txt 526: -- REGEX is AVE *([-0-9.]*) 526: -- LOWER_THRESH is 114.4 @@ -22075,6 +22129,9 @@ 526: -- PARSED VALUE=|MIN 0.000000 AVE 114.545189 MAX 996.552368 NONZERO 43320 NUMVOX 54872| 526: -- PARSED_VALUE=|114.545189| 526: Not an error +529: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +529: PARMS is xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125 +529: EXPECTED_ERRNO is 533: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-1-stats.stdout.txt 533: -- REGEX is AVE *([-0-9.]*) 533: -- LOWER_THRESH is -745.8 @@ -22082,13 +22139,355 @@ 533: -- PARSED VALUE=|MIN -999.979248 AVE -745.231567 MAX 0.000000 NONZERO 5851 NUMVOX 6859| 533: -- PARSED_VALUE=|-745.231567| 533: Not an error -541/578 Test #526: plm-warp-i-check-1 .................... Passed 0.19 sec -test 539 - Start 539: plm-xf-convert-g +536: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt +536: -- REGEX is AVE *([-0-9.]*) +536: -- LOWER_THRESH is -751.0 +536: -- UPPER_THRESH is -744.8 +536: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| +536: -- PARSED_VALUE=|-745.347717| +536: Not an error +537: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +537: PARMS is xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom +537: EXPECTED_ERRNO is +530/578 Test #494: plm-threshold-b-check ................. Passed 0.27 sec +531/578 Test #497: plm-threshold-c-check ................. Passed 0.27 sec +532/578 Test #503: plm-warp-a-check ...................... Passed 0.25 sec +533/578 Test #506: plm-warp-b-check-1 .................... Passed 0.25 sec +534/578 Test #508: plm-warp-b-check-2 .................... Passed 0.24 sec +535/578 Test #511: plm-warp-c-check ...................... Passed 0.24 sec +test 555 + Start 555: xf-invert-vrs-b-check -539: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=plm-xf-convert-g" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -539: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -539: Test timeout computed to be: 1500 +555: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-DREGEX=^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$" "-DLOWER_THRESH=-0.52361" "-DUPPER_THRESH=-0.52359" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +555: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +555: Test timeout computed to be: 1500 +test 558 + Start 558: proton-dose-1-check + +558: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.140" "-DUPPER_THRESH=0.145" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +558: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +558: Test timeout computed to be: 1500 +test 561 + Start 561: proton-dose-4a-check + +561: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +561: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +561: Test timeout computed to be: 1500 +test 564 + Start 564: proton-dose-4d-check + +564: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +564: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +564: Test timeout computed to be: 1500 +test 567 + Start 567: proton-dose-5a-check + +567: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +567: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +567: Test timeout computed to be: 1500 +test 570 + Start 570: proton-dose-5d-check + +570: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +570: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +570: Test timeout computed to be: 1500 +test 573 + Start 573: proton-dose-6a-check + +573: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" +573: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +573: Test timeout computed to be: 1500 +test 575 + Start 575: proton-dose-8d-stats + +575: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" +575: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing +575: Test timeout computed to be: 1500 +498: RETVAL: 0 +498: STDOUT: bspline_xform_initialize +498: rdims = (5,5,5) +498: vox_per_rgn = (8,8,8) +498: cdims = (8 8 8) +498: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv +498: +498: STDERR: +498: Not an error +499: Not an error +500: Not an error +536/578 Test #514: plm-warp-d-check ...................... Passed 0.27 sec +537/578 Test #517: plm-warp-f-check-1 .................... Passed 0.27 sec +538/578 Test #520: plm-warp-g-check-1 .................... Passed 0.27 sec +539/578 Test #523: plm-warp-h-check-1 .................... Passed 0.26 sec +540/578 Test #526: plm-warp-i-check-1 .................... Passed 0.26 sec +541/578 Test #533: plm-xf-convert-d-warp-1-check ......... Passed 0.26 sec +542/578 Test #536: plm-xf-convert-d-warp-2-check ......... Passed 0.25 sec +537: RETVAL: 0 +537: STDOUT: Loading fixed... +537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205400.1751858934.392789RTDOSE +537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205400.1751858934.392790RTSTRUCT +537: Found DCM_ReferencedFrameOfReferenceSequence! +537: Found DCM_RTReferencedStudySequence! +537: Trying to load rt dose. +537: Load: DoseGridScaling = 0.000000 +537: RTDOSE: dim = 38 38 38 +537: ipp = -243.421005 -243.421005 -243.421005 +537: spc = 13.157900 13.157900 13.157900 +537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +537: Bits_alloc: 32 +537: Bits_stored: 32 +537: High_bit: 31 +537: Pixel_rep: 0 +537: rc = 1, length = 109744, npix = 54872 +537: Trying to load rt structure set. +537: Adding structure (1), Foreground +537: Structure 1 has color 255\0\0 +537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205400.1751858934.392789RTDOSE +537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205400.1751858934.392790RTSTRUCT +537: Found DCM_ReferencedFrameOfReferenceSequence! +537: Found DCM_RTReferencedStudySequence! +537: Trying to load rt dose. +537: Load: DoseGridScaling = 0.000000 +537: RTDOSE: dim = 38 38 38 +537: ipp = -243.421005 -243.421005 -243.421005 +537: spc = 13.157900 13.157900 13.157900 +537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +537: Bits_alloc: 32 +537: Bits_stored: 32 +537: High_bit: 31 +537: Pixel_rep: 0 +537: rc = 1, length = 109744, npix = 54872 +537: Trying to load rt structure set. +537: Adding structure (1), Foreground +537: Structure 1 has color 255\0\0 +537: Loading moving... +537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359128RTDOSE +537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359129RTSTRUCT +537: Found DCM_ReferencedFrameOfReferenceSequence! +537: Found DCM_RTReferencedStudySequence! +537: Trying to load rt dose. +537: Load: DoseGridScaling = 0.000000 +537: RTDOSE: dim = 38 38 38 +537: ipp = -243.421005 -243.421005 -243.421005 +537: spc = 13.157900 13.157900 13.157900 +537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +537: Bits_alloc: 32 +537: Bits_stored: 32 +537: High_bit: 31 +537: Pixel_rep: 0 +537: rc = 1, length = 109744, npix = 54872 +537: Trying to load rt structure set. +537: Adding structure (1), Foreground +537: Structure 1 has color 255\0\0 +537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359128RTDOSE +537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359129RTSTRUCT +537: Found DCM_ReferencedFrameOfReferenceSequence! +537: Found DCM_RTReferencedStudySequence! +537: Trying to load rt dose. +537: Load: DoseGridScaling = 0.000000 +537: RTDOSE: dim = 38 38 38 +537: ipp = -243.421005 -243.421005 -243.421005 +537: spc = 13.157900 13.157900 13.157900 +537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +537: Bits_alloc: 32 +537: Bits_stored: 32 +537: High_bit: 31 +537: Pixel_rep: 0 +537: rc = 1, length = 109744, npix = 54872 +537: Trying to load rt structure set. +537: Adding structure (1), Foreground +537: Structure 1 has color 255\0\0 +537: Saving sro +537: ITK_AFF_OFF +537: 20.000000 0.000000 0.000000 +537: SRO +537: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0 +537: Trying to save SRO: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e/sro.dcm +537: Done saving sro +537: +537: STDERR: +537: Not an error +538: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +538: PARMS is xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha +538: EXPECTED_ERRNO is +542: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt +542: -- REGEX is Min: *([-0-9.]*) +542: -- LOWER_THRESH is 20 +542: -- UPPER_THRESH is 20 +542: -- PARSED VALUE=|Min: 20.000 0.000 0.000| +542: -- PARSED_VALUE=|20.000| +542: Not an error +543/578 Test #542: plm-xf-convert-h-check ................ Passed 0.25 sec +539: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +539: PARMS is xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom +539: EXPECTED_ERRNO is +548: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt +548: -- REGEX is Mean abs: *([-0-9.]*) +548: -- LOWER_THRESH is 0.000 +548: -- UPPER_THRESH is 0.000 +548: -- PARSED VALUE=|Mean abs: 0.000 0.000 0.000| +548: -- PARSED_VALUE=|0.000| +548: Not an error +544/578 Test #548: xf-invert-vf-zero-1-check ............. Passed 0.24 sec +551: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt +551: -- REGEX is Mean: *([-0-9.]*) +551: -- LOWER_THRESH is -10.0 +551: -- UPPER_THRESH is -9.9 +551: -- PARSED VALUE=|Mean: -9.999 0.000 0.000| +551: -- PARSED_VALUE=|-9.999| +551: Not an error +545/578 Test #551: xf-invert-vf-trans-1-check ............ Passed 0.24 sec +545: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-stats.stdout.txt +545: -- REGEX is Min: *([-0-9.]*) +545: -- LOWER_THRESH is 7.155 +545: -- UPPER_THRESH is 7.165 +545: -- PARSED VALUE=|Min: 7.161 -0.245 -0.245| +545: -- PARSED_VALUE=|7.161| +545: Not an error +546/578 Test #545: plm-xf-convert-i-check ................ Passed 0.24 sec +553: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm +553: -- REGEX is ^Parameters: *(.*)$ +553: -- MATCH_STRING is 0 0 0 -20 0 0 +553: -- PARSED VALUE=|Parameters: 0 0 0 -20 0 0| +553: -- PARSED_VALUE=|0 0 0 -20 0 0| +553: -- LENGTH=13 +553: -- |0 0 0 -20 0 0|0 0 0 -20 0 0| +553: Not an error +547/578 Test #553: xf-invert-vrs-a-check ................. Passed 0.24 sec +449: RETVAL: 0 +449: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha) +449: Setting PIH from VF +449: PIH is: +449: Origin = -25.0000 -25.0000 -25.0000 +449: Size = 38 38 38 +449: Spacing = 1.3158 1.3158 1.3158 +449: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +449: Rt_study_warp: Warping m_img +449: plm_warp_itk: xform_to_itk_vf +449: plm_warp_itk: convert_to_itk +449: plm_warp_itk: warping... +449: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha) +449: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha +449: Rt_study_warp: warp and save ss. +449: Finished! +449: +449: STDERR: +449: Not an error +453: RETVAL: 0 +453: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha) +453: Setting PIH from VF +453: PIH is: +453: Origin = -25.0000 -25.0000 -25.0000 +453: Size = 38 38 38 +453: Spacing = 1.3158 1.3158 1.3158 +453: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +453: Rt_study_warp: Warping m_img +453: plm_warp_itk: xform_to_itk_vf +453: plm_warp_itk: convert_to_itk +453: plm_warp_itk: warping... +453: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha) +453: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha +453: Rt_study_warp: warp and save ss. +453: Finished! +453: +453: STDERR: +453: Not an error +445: RETVAL: 0 +445: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-vf.mha) +445: Setting PIH from VF +445: PIH is: +445: Origin = -25.0000 -25.0000 -25.0000 +445: Size = 38 38 38 +445: Spacing = 1.3158 1.3158 1.3158 +445: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 +445: Rt_study_warp: Warping m_img +445: plm_warp_itk: xform_to_itk_vf +445: plm_warp_itk: convert_to_itk +445: plm_warp_itk: warping... +445: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha) +445: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-a-warp.mha +445: Rt_study_warp: warp and save ss. +445: Finished! +445: +445: STDERR: +445: Not an error +555: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm +555: -- REGEX is ^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$ +555: -- LOWER_THRESH is -0.52361 +555: -- UPPER_THRESH is -0.52359 +555: -- PARSED VALUE=|Parameters: -0.5236 0 0 0 0 0| +555: -- PARSED_VALUE=|-0.5236| +555: Not an error +558: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt +558: -- REGEX is AVE *([-0-9.]*) +558: -- LOWER_THRESH is 0.140 +558: -- UPPER_THRESH is 0.145 +558: -- PARSED VALUE=|MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000| +558: -- PARSED_VALUE=|0.143515| +558: Not an error +561: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt +561: -- REGEX is AVE *([-0-9.]*) +561: -- LOWER_THRESH is 0.26 +561: -- UPPER_THRESH is 0.27 +561: -- PARSED VALUE=|MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000| +561: -- PARSED_VALUE=|0.266114| +561: Not an error +564: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt +564: -- REGEX is AVE *([-0-9.]*) +564: -- LOWER_THRESH is 0.38 +564: -- UPPER_THRESH is 0.39 +564: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| +564: -- PARSED_VALUE=|0.386816| +564: Not an error +548/578 Test #445: plm-compose-a-warp .................... Passed 0.35 sec +549/578 Test #449: plm-compose-b-warp .................... Passed 0.35 sec +550/578 Test #453: plm-compose-c-warp .................... Passed 0.34 sec +551/578 Test #498: plm-warp-pointset-a ................... Passed 0.29 sec +552/578 Test #499: plm-warp-pointset-b ................... Passed 0.29 sec +553/578 Test #500: plm-warp-pointset-c ................... Passed 0.29 sec +554/578 Test #537: plm-xf-convert-e ...................... Passed 0.26 sec +555/578 Test #555: xf-invert-vrs-b-check ................. Passed 0.04 sec +556/578 Test #558: proton-dose-1-check ................... Passed 0.03 sec +557/578 Test #561: proton-dose-4a-check .................. Passed 0.03 sec +558/578 Test #564: proton-dose-4d-check .................. Passed 0.03 sec +529: RETVAL: 0 +529: STDOUT: bspline_xform_initialize +529: rdims = (1,1,1) +529: vox_per_rgn = (4,4,4) +529: cdims = (4 4 4) +529: about to xform_convert +529: Converting to (itk) vector field +529: did xform_convert +529: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha +529: +529: STDERR: +529: Not an error +570: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt +570: -- REGEX is AVE *([-0-9.]*) +570: -- LOWER_THRESH is 0.38 +570: -- UPPER_THRESH is 0.39 +570: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| +570: -- PARSED_VALUE=|0.386816| +570: Not an error +567: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt +567: -- REGEX is AVE *([-0-9.]*) +567: -- LOWER_THRESH is 0.26 +567: -- UPPER_THRESH is 0.27 +567: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| +567: -- PARSED_VALUE=|0.266122| +567: Not an error +559/578 Test #570: proton-dose-5d-check .................. Passed 0.02 sec +560/578 Test #529: plm-xf-convert-c ...................... Passed 0.27 sec +561/578 Test #567: proton-dose-5a-check .................. Passed 0.03 sec +573: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt +573: -- REGEX is AVE *([-0-9.]*) +573: -- LOWER_THRESH is 0.26 +573: -- UPPER_THRESH is 0.27 +573: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| +573: -- PARSED_VALUE=|0.266122| +573: Not an error +575: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch +575: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha +575: EXPECTED_ERRNO is 419: RETVAL: 0 419: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 419: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha @@ -22134,31 +22533,29 @@ 419: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b-img.mha 419: Saving vf... 419: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-b-vf.mha -419: Load: 0.153943 -419: Run: 0.143462 -419: Save: 0.052783 -419: Total: 0.350188 +419: Load: 0.174265 +419: Run: 0.0188911 +419: Save: 0.0484731 +419: Total: 0.241629 419: Finished! 419: 419: STDERR: 419: Not an error -529: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -529: PARMS is xf-convert;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-b.txt;--output;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha;--output-type;vf;--dim;4 4 4;--origin;-187.5 -187.5 -187.5;--spacing;125 125 125 -529: EXPECTED_ERRNO is -542/578 Test #419: plm-reg-roi-b ......................... Passed 0.86 sec -543/578 Test #533: plm-xf-convert-d-warp-1-check ......... Passed 0.15 sec -test 542 - Start 542: plm-xf-convert-h-check - -542: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=20" "-DUPPER_THRESH=20" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -542: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -542: Test timeout computed to be: 1500 -test 545 - Start 545: plm-xf-convert-i-check - -545: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-stats.stdout.txt" "-DREGEX=Min: *([-0-9.]*)" "-DLOWER_THRESH=7.155" "-DUPPER_THRESH=7.165" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -545: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -545: Test timeout computed to be: 1500 +562/578 Test #573: proton-dose-6a-check .................. Passed 0.03 sec +563/578 Test #419: plm-reg-roi-b ......................... Passed 0.41 sec +538: RETVAL: 0 +538: STDOUT: Loading fixed... +538: Loading moving... +538: Saving sro +538: ITK_AFF_OFF +538: 20.000000 0.000000 0.000000 +538: SRO +538: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0 +538: Trying to save SRO: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f/sro.dcm +538: Done saving sro +538: +538: STDERR: +538: Not an error 420: RETVAL: 0 420: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 420: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha @@ -22192,8 +22589,8 @@ 420: Setting nmax, mmax = 864 31 420: >>> START 420: This problem is unconstrained. -420: [ 0, 0] SCORE 0.0000000 NV 1690 GM 0.000 GN 0 [ 0.158 s ] -420: MSE 0.0000000 RM 0.000 [ 0.126 | 0.032 ] +420: [ 0, 0] SCORE 0.0000000 NV 1690 GM 0.000 GN 0 [ 0.035 s ] +420: MSE 0.0000000 RM 0.000 [ 0.028 | 0.007 ] 420: CMIN 0.00 CAVG 0.00 CMAX 0.00 420: LSD 0.00 420: * * * @@ -22239,219 +22636,427 @@ 420: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-img.mha 420: Saving vf... 420: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-c-vf.mha -420: Load: 0.0823321 -420: Run: 0.207777 -420: Save: 0.141482 -420: Total: 0.431591 +420: Load: 0.169286 +420: Run: 0.0468881 +420: Save: 0.0482049 +420: Total: 0.264379 420: Finished! 420: 420: STDERR: 420: Not an error -536: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-d-warp-2-stats.stdout.txt -536: -- REGEX is AVE *([-0-9.]*) -536: -- LOWER_THRESH is -751.0 -536: -- UPPER_THRESH is -744.8 -536: -- PARSED VALUE=|MIN -999.988708 AVE -745.347717 MAX 0.000000 NONZERO 46833 NUMVOX 54872| -536: -- PARSED_VALUE=|-745.347717| -536: Not an error -544/578 Test #420: plm-reg-roi-c ......................... Passed 0.93 sec -545/578 Test #536: plm-xf-convert-d-warp-2-check ......... Passed 0.20 sec -test 548 - Start 548: xf-invert-vf-zero-1-check - -548: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt" "-DREGEX=Mean abs: *([-0-9.]*)" "-DLOWER_THRESH=0.000" "-DUPPER_THRESH=0.000" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -548: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -548: Test timeout computed to be: 1500 -test 551 - Start 551: xf-invert-vf-trans-1-check - -551: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt" "-DREGEX=Mean: *([-0-9.]*)" "-DLOWER_THRESH=-10.0" "-DUPPER_THRESH=-9.9" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -551: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -551: Test timeout computed to be: 1500 -538: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -538: PARMS is xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f;--fixed-image;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha;--moving-image;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2.mha -538: EXPECTED_ERRNO is -537: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -537: PARMS is xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/Data/itk-rigid-a.tfm;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e;--fixed-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom;--moving-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom -537: EXPECTED_ERRNO is -539: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -539: PARMS is xf-convert;--filenames-without-uids;--input;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-bsp-rect-vf.nrrd;--output-dicom;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g;--fixed-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-2-dicom;--moving-rcs;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3-dicom -539: EXPECTED_ERRNO is -542: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-h-stats.stdout.txt -542: -- REGEX is Min: *([-0-9.]*) -542: -- LOWER_THRESH is 20 -542: -- UPPER_THRESH is 20 -542: -- PARSED VALUE=|Min: 20.000 0.000 0.000| -542: -- PARSED_VALUE=|20.000| -542: Not an error -546/578 Test #542: plm-xf-convert-h-check ................ Passed 0.16 sec -test 553 - Start 553: xf-invert-vrs-a-check - -553: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm" "-DREGEX=^Parameters: *(.*)$" "-DMATCH_STRING=0 0 0 -20 0 0" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckString.cmake" -553: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -553: Test timeout computed to be: 1500 -545: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-i-stats.stdout.txt -545: -- REGEX is Min: *([-0-9.]*) -545: -- LOWER_THRESH is 7.155 -545: -- UPPER_THRESH is 7.165 -545: -- PARSED VALUE=|Min: 7.161 -0.245 -0.245| -545: -- PARSED_VALUE=|7.161| -545: Not an error -547/578 Test #545: plm-xf-convert-i-check ................ Passed 0.17 sec -test 555 - Start 555: xf-invert-vrs-b-check - -555: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm" "-DREGEX=^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$" "-DLOWER_THRESH=-0.52361" "-DUPPER_THRESH=-0.52359" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -555: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -555: Test timeout computed to be: 1500 -548: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-zero-1-stats.stdout.txt -548: -- REGEX is Mean abs: *([-0-9.]*) -548: -- LOWER_THRESH is 0.000 -548: -- UPPER_THRESH is 0.000 -548: -- PARSED VALUE=|Mean abs: 0.000 0.000 0.000| -548: -- PARSED_VALUE=|0.000| -548: Not an error -548/578 Test #548: xf-invert-vf-zero-1-check ............. Passed 0.20 sec -test 558 - Start 558: proton-dose-1-check - -558: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.140" "-DUPPER_THRESH=0.145" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -558: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -558: Test timeout computed to be: 1500 -553: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-a.tfm -553: -- REGEX is ^Parameters: *(.*)$ -553: -- MATCH_STRING is 0 0 0 -20 0 0 -553: -- PARSED VALUE=|Parameters: 0 0 0 -20 0 0| -553: -- PARSED_VALUE=|0 0 0 -20 0 0| -553: -- LENGTH=13 -553: -- |0 0 0 -20 0 0|0 0 0 -20 0 0| -553: Not an error -449: RETVAL: 0 -449: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-vf.mha) -449: Setting PIH from VF -449: PIH is: -449: Origin = -25.0000 -25.0000 -25.0000 -449: Size = 38 38 38 -449: Spacing = 1.3158 1.3158 1.3158 -449: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -449: Rt_study_warp: Warping m_img -449: plm_warp_itk: xform_to_itk_vf -449: plm_warp_itk: convert_to_itk -449: plm_warp_itk: warping... -449: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha) -449: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-b-warp.mha -449: Rt_study_warp: warp and save ss. -449: Finished! -449: -449: STDERR: -449: Not an error -551: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vf-trans-1-stats.stdout.txt -551: -- REGEX is Mean: *([-0-9.]*) -551: -- LOWER_THRESH is -10.0 -551: -- UPPER_THRESH is -9.9 -551: -- PARSED VALUE=|Mean: -9.999 0.000 0.000| -551: -- PARSED_VALUE=|-9.999| -551: Not an error -549/578 Test #553: xf-invert-vrs-a-check ................. Passed 0.15 sec -test 561 - Start 561: proton-dose-4a-check - -561: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -561: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -561: Test timeout computed to be: 1500 -498: RETVAL: 0 -498: STDOUT: bspline_xform_initialize -498: rdims = (5,5,5) -498: vox_per_rgn = (8,8,8) -498: cdims = (8 8 8) -498: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-a.fcsv -498: -498: STDERR: -498: Not an error -550/578 Test #449: plm-compose-b-warp .................... Passed 1.05 sec -551/578 Test #498: plm-warp-pointset-a ................... Passed 0.83 sec -552/578 Test #551: xf-invert-vf-trans-1-check ............ Passed 0.25 sec -test 564 - Start 564: proton-dose-4d-check - -564: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -564: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -564: Test timeout computed to be: 1500 -test 567 - Start 567: proton-dose-5a-check - -567: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -567: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -567: Test timeout computed to be: 1500 -test 570 - Start 570: proton-dose-5d-check - -570: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.38" "-DUPPER_THRESH=0.39" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -570: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -570: Test timeout computed to be: 1500 -555: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/xf-invert-vrs-b.tfm -555: -- REGEX is ^Parameters: *([-0-9.]*) *0 *0 *0 *0 *0 *$ -555: -- LOWER_THRESH is -0.52361 -555: -- UPPER_THRESH is -0.52359 -555: -- PARSED VALUE=|Parameters: -0.5236 0 0 0 0 0| -555: -- PARSED_VALUE=|-0.5236| -555: Not an error -558: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-1-stats.stdout.txt -558: -- REGEX is AVE *([-0-9.]*) -558: -- LOWER_THRESH is 0.140 -558: -- UPPER_THRESH is 0.145 -558: -- PARSED VALUE=|MIN 0.000000 AVE 0.143515 MAX 70.000000 NONZERO 775 NUMVOX 216000| -558: -- PARSED_VALUE=|0.143515| -558: Not an error -561: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4a-stats.stdout.txt -561: -- REGEX is AVE *([-0-9.]*) -561: -- LOWER_THRESH is 0.26 -561: -- UPPER_THRESH is 0.27 -561: -- PARSED VALUE=|MIN 0.000000 AVE 0.266114 MAX 100.000000 NONZERO 932 NUMVOX 216000| -561: -- PARSED_VALUE=|0.266114| -561: Not an error -553/578 Test #555: xf-invert-vrs-b-check ................. Passed 0.26 sec -554/578 Test #558: proton-dose-1-check ................... Passed 0.20 sec -test 573 - Start 573: proton-dose-6a-check - -573: Test command: /usr/bin/cmake "-DINFILE=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt" "-DREGEX=AVE *([-0-9.]*)" "-DLOWER_THRESH=0.26" "-DUPPER_THRESH=0.27" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing/PlmCheckInterval.cmake" -573: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -573: Test timeout computed to be: 1500 -test 575 - Start 575: proton-dose-8d-stats - -575: Test command: /usr/bin/cmake "-DPLM_TEST_NAME=proton-dose-8d-stats" "-DPLM_TEST_COMMAND=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch" "-DPLM_TESTING_SOURCE_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/Testing" "-DPLM_BUILD_TESTING_DIR=/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing" "-DPARMS=stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha" "-P" "/build/reproducible-path/plastimatch-1.9.4+dfsg.1/cmake/RUN_CTEST.cmake" -575: Working Directory: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing -575: Test timeout computed to be: 1500 -555/578 Test #561: proton-dose-4a-check .................. Passed 0.21 sec -453: RETVAL: 0 -453: STDOUT: Loading xform (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-vf.mha) -453: Setting PIH from VF -453: PIH is: -453: Origin = -25.0000 -25.0000 -25.0000 -453: Size = 38 38 38 -453: Spacing = 1.3158 1.3158 1.3158 -453: Direction = 1.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 1.0000 -453: Rt_study_warp: Warping m_img -453: plm_warp_itk: xform_to_itk_vf -453: plm_warp_itk: convert_to_itk -453: plm_warp_itk: warping... -453: Rt_study_warp: Saving m_img (/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha) -453: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-compose-c-warp.mha -453: Rt_study_warp: warp and save ss. -453: Finished! -453: -453: STDERR: -453: Not an error -567: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5a-stats.stdout.txt -567: -- REGEX is AVE *([-0-9.]*) -567: -- LOWER_THRESH is 0.26 -567: -- UPPER_THRESH is 0.27 -567: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| -567: -- PARSED_VALUE=|0.266122| -567: Not an error +564/578 Test #420: plm-reg-roi-c ......................... Passed 0.43 sec +565/578 Test #538: plm-xf-convert-f ...................... Passed 0.30 sec +539: RETVAL: 0 +539: STDOUT: Loading fixed... +539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359128RTDOSE +539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359129RTSTRUCT +539: Found DCM_ReferencedFrameOfReferenceSequence! +539: Found DCM_RTReferencedStudySequence! +539: Trying to load rt dose. +539: Load: DoseGridScaling = 0.000000 +539: RTDOSE: dim = 38 38 38 +539: ipp = -243.421005 -243.421005 -243.421005 +539: spc = 13.157900 13.157900 13.157900 +539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +539: Bits_alloc: 32 +539: Bits_stored: 32 +539: High_bit: 31 +539: Pixel_rep: 0 +539: rc = 1, length = 109744, npix = 54872 +539: Trying to load rt structure set. +539: Adding structure (1), Foreground +539: Structure 1 has color 255\0\0 +539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359128RTDOSE +539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205393.1751858934.359129RTSTRUCT +539: Found DCM_ReferencedFrameOfReferenceSequence! +539: Found DCM_RTReferencedStudySequence! +539: Trying to load rt dose. +539: Load: DoseGridScaling = 0.000000 +539: RTDOSE: dim = 38 38 38 +539: ipp = -243.421005 -243.421005 -243.421005 +539: spc = 13.157900 13.157900 13.157900 +539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +539: Bits_alloc: 32 +539: Bits_stored: 32 +539: High_bit: 31 +539: Pixel_rep: 0 +539: rc = 1, length = 109744, npix = 54872 +539: Trying to load rt structure set. +539: Adding structure (1), Foreground +539: Structure 1 has color 255\0\0 +539: Loading moving... +539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205400.1751858934.392789RTDOSE +539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205400.1751858934.392790RTSTRUCT +539: Found DCM_ReferencedFrameOfReferenceSequence! +539: Found DCM_RTReferencedStudySequence! +539: Trying to load rt dose. +539: Load: DoseGridScaling = 0.000000 +539: RTDOSE: dim = 38 38 38 +539: ipp = -243.421005 -243.421005 -243.421005 +539: spc = 13.157900 13.157900 13.157900 +539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +539: Bits_alloc: 32 +539: Bits_stored: 32 +539: High_bit: 31 +539: Pixel_rep: 0 +539: rc = 1, length = 109744, npix = 54872 +539: Trying to load rt structure set. +539: Adding structure (1), Foreground +539: Structure 1 has color 255\0\0 +539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205400.1751858934.392789RTDOSE +539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.3205400.1751858934.392790RTSTRUCT +539: Found DCM_ReferencedFrameOfReferenceSequence! +539: Found DCM_RTReferencedStudySequence! +539: Trying to load rt dose. +539: Load: DoseGridScaling = 0.000000 +539: RTDOSE: dim = 38 38 38 +539: ipp = -243.421005 -243.421005 -243.421005 +539: spc = 13.157900 13.157900 13.157900 +539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 +539: Bits_alloc: 32 +539: Bits_stored: 32 +539: High_bit: 31 +539: Pixel_rep: 0 +539: rc = 1, length = 109744, npix = 54872 +539: Trying to load rt structure set. +539: Adding structure (1), Foreground +539: Structure 1 has color 255\0\0 +539: Saving sro +539: Trying to save SRO: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g/dro.dcm +539: Done saving sro +539: +539: STDERR: +539: Not an error +566/578 Test #539: plm-xf-convert-g ...................... Passed 0.33 sec +422: RETVAL: 0 +422: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha +422: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha +422: Launching registration worker thread +422: Inside registration worker thread +422: Doing registration stage +422: [1] xf_in->m_type = 0, xf_out->m_type = 0 +422: Fixed image for this stage: +422: Dim = 15 25 15 +422: Origin = -14 -24 -14 +422: Spacing = 2 2 2 +422: Direction Cosines = +422: 1 0 0 +422: 0 1 0 +422: 0 0 1 +422: Moving image for this stage: +422: Dim = 15 25 15 +422: Origin = -14 -24 -14 +422: Spacing = 2 2 2 +422: Direction Cosines = +422: 1 0 0 +422: 0 1 0 +422: 0 0 1 +422: Initial Parameters = [0, 0, 0] +422: Starting ITK registration +422: StartEvent: [0, 0, 0] +422: MSE [ 0, 0, 1.00] 20000.000 [-0.9999999727511648, 0.00023344735891123153, 0] +422: :: [0, 0, 0] +422: * +422: MSE [ 1, 1, 1.00] 16666.407 [-1.9999999583532024, 0.00006375373999510409, -1.0184177300406575e-17] -3333.59 +422: :: [-0.9999999727511648, 0.00023344735891123153, 0] +422: * +422: MSE [ 2, 2, 1.00] 21428.450 [-2.9999999539450632, 0.00015764878267369732, 1.1988331301321566e-16] 4762.04 +422: MSE [ 3, 3, 0.50] 17856.955 [-2.4999999789370184, -4.3965600468777325e-7, 1.3363734991268503e-16] -3571.49 +422: MSE [ 4, 4, 0.50] 18749.999 [-1.9999999790242364, -0.000009778710908836102, 1.9323364181246773e-16] 893.04 +422: MSE [ 5, 5, 0.25] 21428.553 [-2.2499999446638332, 0.00012129455271897703, 2.1274376341143324e-16] 2678.55 +422: MSE [ 6, 6, 0.12] 19865.879 [-2.1250000509246822, -0.00004169379354036178, 2.2582084929206e-16] -1562.67 +422: MSE [ 7, 7, 0.06] 20591.445 [-2.187499942399231, 0.00007477796101175552, 2.3619285107730225e-16] 725.57 +422: MSE [ 8, 8, 0.03] 20214.720 [-2.1562503690872257, -0.00008852487918588618, 1.9519086807274486e-16] -376.73 +422: MSE [ 9, 9, 0.02] 20399.540 [-2.1718751050913467, 0.000002303538879451012, 1.9662323051212797e-16] 184.82 +422: EndEvent: [-2.1718751050913467, 0.000002303538879451012, 1.9662323051212797e-16] +422: RegularStepGradientDescentOptimizer: Maximum number of iterations (10) exceeded. +422: ITK registration complete +422: [2] xf_out->m_type = 1, xf_in->m_type = 0 +422: Doing registration stage +422: [1] xf_in->m_type = 1, xf_out->m_type = 0 +422: RESAMPLE 1 1: (2 2 2), (2 2 2) +422: RESAMPLE 1 1: (2 2 2), (2 2 2) +422: volume_calc_grad complete. +422: bspline_xform_initialize +422: rdims = (3,5,3) +422: vox_per_rgn = (5,5,5) +422: cdims = (6 8 6) +422: Algorithm flavor = g +422: Threading = 0 +422: Regularization: flavor = c lambda = 0.100000 +422: Regularizer initialized +422: >> Checking JH allocation +422: BSPLINE PARMS +422: max_its = 5 +422: max_feval = 5 +422: BSPLINE XFORM HEADER +422: vox_per_rgn = 5 5 5 +422: roi_offset = 0 0 0 +422: roi_dim = 15 25 15 +422: img_dc = 1 0 0 0 1 0 0 0 1 +422: BST METRICS +422: MET 110100 MSE 1.000000 +422: Setting nmax, mmax = 864 31 +422: >>> START +422: This problem is unconstrained. +422: [ 0, 0] SCORE 17856.865 NV 5250 GM 596.305 GN 997 [ 0.014 s ] +422: MSE 17856.865 RM 0.000 [ 0.009 | 0.006 ] +422: CMIN -1.00 CAVG -0.33 CMAX 0.00 +422: LSD 0.00 +422: [ 0, 1] SCORE 15761.621 NV 5415 GM 4002.270 GN 1.58e+03 [ 0.012 s ] +422: MSE 15761.603 RM 0.019 [ 0.007 | 0.005 ] +422: CMIN -1.35 CAVG -0.33 CMAX 0.11 +422: LSD 1.00 +422: [ 0, 2] SCORE 11419.833 NV 5415 GM 3904.956 GN 1.2e+03 [ 0.010 s ] +422: MSE 11419.360 RM 0.473 [ 0.005 | 0.006 ] +422: CMIN -2.76 CAVG -0.34 CMAX 0.57 +422: LSD 5.00 +422: [ 0, 3] SCORE 11865.492 NV 5349 GM 4432.436 GN 1.31e+03 [ 0.011 s ] +422: MSE 11857.157 RM 8.335 [ 0.004 | 0.007 ] +422: CMIN -8.39 CAVG -0.35 CMAX 4.37 +422: LSD 21.00 +422: [ 1, 4] SCORE 2624.840 NV 5330 GM 1520.288 GN 405 [ 0.007 s ] +422: MSE 2620.351 RM 4.489 [ 0.004 | 0.003 ] +422: CMIN -7.51 CAVG -0.37 CMAX 1.81 +422: LSD 7.90 +422: [ 2, 5] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.010 s ] +422: MSE 2064.967 RM 5.786 [ 0.006 | 0.005 ] +422: CMIN -8.62 CAVG -0.39 CMAX 1.40 +422: LSD 4.35 +422: [2] xf_out->m_type = 9, xf_in->m_type = 1 +422: Doing registration stage +422: [1] xf_in->m_type = 9, xf_out->m_type = 0 +422: RESAMPLE 1 1: (2 2 2), (2 2 2) +422: RESAMPLE 1 1: (2 2 2), (2 2 2) +422: volume_calc_grad complete. +422: bspline_xform_initialize +422: rdims = (3,5,3) +422: vox_per_rgn = (5,5,5) +422: cdims = (6 8 6) +422: Algorithm flavor = g +422: Threading = 0 +422: Regularization: flavor = c lambda = 0.100000 +422: Regularizer initialized +422: >> Checking JH allocation +422: BSPLINE PARMS +422: max_its = 5 +422: max_feval = 5 +422: BSPLINE XFORM HEADER +422: vox_per_rgn = 5 5 5 +422: roi_offset = 0 0 0 +422: roi_dim = 15 25 15 +422: img_dc = 1 0 0 0 1 0 0 0 1 +422: BST METRICS +422: MET 110100 MSE 1.000000 +422: Setting nmax, mmax = 864 31 +422: >>> START +422: This problem is unconstrained. +422: [ 0, 0] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.007 s ] +422: MSE 2064.967 RM 5.786 [ 0.002 | 0.005 ] +422: CMIN -8.62 CAVG -0.39 CMAX 1.40 +422: LSD 0.00 +422: [ 0, 1] SCORE 1741.366 NV 5318 GM -709.336 GN 291 [ 0.009 s ] +422: MSE 1736.001 RM 5.365 [ 0.004 | 0.005 ] +422: CMIN -8.13 CAVG -0.39 CMAX 1.38 +422: LSD 1.00 +422: [ 1, 2] SCORE 1448.726 NV 5351 GM 553.138 GN 184 [ 0.010 s ] +422: MSE 1444.063 RM 4.664 [ 0.006 | 0.005 ] +422: CMIN -7.05 CAVG -0.38 CMAX 1.33 +422: LSD 2.47 +422: [ 2, 3] SCORE 1411.069 NV 5344 GM 258.307 GN 92.3 [ 0.008 s ] +422: MSE 1406.122 RM 4.946 [ 0.004 | 0.004 ] +422: CMIN -7.20 CAVG -0.39 CMAX 1.33 +422: LSD 0.62 +422: [ 3, 4] SCORE 1391.029 NV 5340 GM -132.885 GN 63.2 [ 0.008 s ] +422: MSE 1385.782 RM 5.247 [ 0.004 | 0.005 ] +422: CMIN -7.41 CAVG -0.39 CMAX 1.30 +422: LSD 0.81 +422: [ 4, 5] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.012 s ] +422: MSE 1375.316 RM 5.240 [ 0.004 | 0.009 ] +422: CMIN -7.42 CAVG -0.39 CMAX 1.30 +422: LSD 0.36 +422: [2] xf_out->m_type = 9, xf_in->m_type = 9 +422: Doing registration stage +422: [1] xf_in->m_type = 9, xf_out->m_type = 0 +422: RESAMPLE 1 1: (2 2 2), (2 2 2) +422: RESAMPLE 1 1: (2 2 2), (2 2 2) +422: volume_calc_grad complete. +422: bspline_xform_initialize +422: rdims = (3,5,3) +422: vox_per_rgn = (5,5,5) +422: cdims = (6 8 6) +422: Algorithm flavor = g +422: Threading = 0 +422: Regularization: flavor = c lambda = 0.100000 +422: Regularizer initialized +422: >> Checking JH allocation +422: BSPLINE PARMS +422: max_its = 5 +422: max_feval = 5 +422: BSPLINE XFORM HEADER +422: vox_per_rgn = 5 5 5 +422: roi_offset = 0 0 0 +422: roi_dim = 15 25 15 +422: img_dc = 1 0 0 0 1 0 0 0 1 +422: BST METRICS +422: MET 110100 MSE 1.000000 +422: Setting nmax, mmax = 864 31 +422: >>> START +422: This problem is unconstrained. +422: [ 0, 0] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.025 s ] +422: MSE 1375.316 RM 5.240 [ 0.011 | 0.014 ] +422: CMIN -7.42 CAVG -0.39 CMAX 1.30 +422: LSD 0.00 +422: [ 0, 1] SCORE 1360.810 NV 5336 GM 259.462 GN 115 [ 0.023 s ] +422: MSE 1355.755 RM 5.056 [ 0.014 | 0.009 ] +422: CMIN -7.23 CAVG -0.39 CMAX 1.32 +422: LSD 1.00 +422: [ 0, 2] SCORE 1363.081 NV 5336 GM 215.275 GN 64.4 [ 0.029 s ] +422: MSE 1357.933 RM 5.148 [ 0.009 | 0.020 ] +422: CMIN -7.33 CAVG -0.39 CMAX 1.31 +422: LSD 0.47 +422: [ 1, 3] SCORE 1355.968 NV 5336 GM 93.286 GN 47.5 [ 0.033 s ] +422: MSE 1350.760 RM 5.209 [ 0.025 | 0.008 ] +422: CMIN -7.36 CAVG -0.39 CMAX 1.31 +422: LSD 0.24 +422: [ 2, 4] SCORE 1327.456 NV 5313 GM -133.711 GN 39.2 [ 0.021 s ] +422: MSE 1321.881 RM 5.575 [ 0.010 | 0.011 ] +422: CMIN -7.53 CAVG -0.39 CMAX 1.33 +422: LSD 1.49 +422: [ 3, 5] SCORE 1315.612 NV 5295 GM -129.321 GN 46.1 [ 0.035 s ] +422: MSE 1309.647 RM 5.965 [ 0.015 | 0.019 ] +422: CMIN -7.65 CAVG -0.40 CMAX 1.39 +422: LSD 1.60 +422: [2] xf_out->m_type = 9, xf_in->m_type = 9 +422: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) +422: bspline_xform_initialize +422: rdims = (3,5,3) +422: vox_per_rgn = (10,10,10) +422: cdims = (6 8 6) +422: ** Registration worker thread finished. +422: Writing transformation ... +422: Warping... +422: Running: plm_warp_native +422: Converting input image... +422: Converting xform... +422: bspline_xform_initialize +422: rdims = (3,5,3) +422: vox_per_rgn = (10,10,10) +422: cdims = (6 8 6) +422: Creating output vf... +422: Creating output volume... +422: Running native warper... +422: bspline_warp complete. +422: Back convert to original type... +422: > Convert vf to itk +422: > Conversion complete. +422: plm_warp_native is complete. +422: Saving image... +422: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-img.mha +422: Saving vf... +422: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-vf.mha +422: Load: 0.027689 +422: Run: 0.317676 +422: Save: 0.0247111 +422: Total: 0.370076 +422: Finished! +422: +422: STDERR: +422: Not an error +567/578 Test #422: plm-reg-roi-e ......................... Passed 0.53 sec +442: RETVAL: 0 +442: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha +442: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha +442: Loading fixed pointset [1]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/sphere-7.fcsv +442: Loading moving image [1]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha +442: Launching registration worker thread +442: Inside registration worker thread +442: Doing registration stage +442: [1] xf_in->m_type = 0, xf_out->m_type = 0 +442: RESAMPLE 1 1: (1 1 1), (1 1 1) +442: RESAMPLE 1 1: (1 1 1), (1 1 1) +442: volume_calc_grad complete. +442: RESAMPLE 1 1: (1 1 1), (1 1 1) +442: volume_calc_grad complete. +442: bspline_xform_initialize +442: Warning: vox_per_rgn was less than 4. +442: Warning: vox_per_rgn was less than 4. +442: Warning: vox_per_rgn was less than 4. +442: rdims = (10,10,10) +442: vox_per_rgn = (4,4,4) +442: cdims = (13 13 13) +442: Algorithm flavor = g +442: Threading = 0 +442: >> Checking JH allocation +442: BSPLINE PARMS +442: max_its = 5 +442: max_feval = 5 +442: BSPLINE XFORM HEADER +442: vox_per_rgn = 4 4 4 +442: roi_offset = 0 0 0 +442: roi_dim = 38 38 38 +442: img_dc = 1 0 0 0 1 0 0 0 1 +442: BST METRICS +442: MET 110100 MSE 1.000000 +442: MET 010100 PDM 30.000000 +442: Setting nmax, mmax = 6591 83 +442: >>> START +442: This problem is unconstrained. +442: [ 0, 0] SCORE 5752.552 NV 54872 GM 5.543 GN 45.1 [ 0.028 s ] +442: MSE 5540.166 PDM 7.0795197 CMIN 0.00 CAVG 0.00 CMAX 0.00 +442: LSD 0.00 +442: [ 0, 1] SCORE 5663.708 NV 54872 GM 0.170 GN 43.8 [ 0.028 s ] +442: MSE 5452.803 PDM 7.0301509 CMIN -0.20 CAVG -0.00 CMAX 0.16 +442: LSD 1.00 +442: [ 0, 2] SCORE 5319.446 NV 54872 GM -0.447 GN 42 [ 0.017 s ] +442: MSE 5114.376 PDM 6.8356566 CMIN -1.00 CAVG -0.00 CMAX 0.78 +442: LSD 5.00 +442: [ 0, 3] SCORE 4111.230 NV 54872 GM -2.786 GN 35.2 [ 0.014 s ] +442: MSE 3928.063 PDM 6.1055741 CMIN -4.21 CAVG -0.00 CMAX 3.26 +442: LSD 21.00 +442: [ 1, 4] SCORE 1404.270 NV 54872 GM 1.576 GN 10.3 [ 0.029 s ] +442: MSE 1228.705 PDM 5.8521819 CMIN -19.53 CAVG 0.01 CMAX 16.23 +442: LSD 76.08 +442: [ 2, 5] SCORE 1282.464 NV 54872 GM 13.580 GN 4.68 [ 0.027 s ] +442: MSE 1058.280 PDM 7.4727950 CMIN -25.04 CAVG 0.01 CMAX 19.49 +442: LSD 32.00 +442: [2] xf_out->m_type = 9, xf_in->m_type = 0 +442: ** Registration worker thread finished. +442: Warping... +442: Running: plm_warp_native +442: Converting input image... +442: Converting xform... +442: bspline_xform_initialize +442: rdims = (10,10,10) +442: vox_per_rgn = (4,4,4) +442: cdims = (13 13 13) +442: Creating output vf... +442: Creating output volume... +442: Running native warper... +442: bspline_warp complete. +442: Back convert to original type... +442: > Convert vf to itk +442: > Conversion complete. +442: plm_warp_native is complete. +442: Saving image... +442: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-img.nrrd +442: Saving vf... +442: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-vf.nrrd +442: Load: 0.062351 +442: Run: 0.152809 +442: Save: 0.0735519 +442: Total: 0.288712 +442: Finished! +442: +442: STDERR: +442: Not an error +568/578 Test #442: plm-reg-point-dmap-a .................. Passed 0.59 sec +575: RETVAL: 0 +575: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 216000 +575: +575: STDERR: +575: Not an error +569/578 Test #575: proton-dose-8d-stats .................. Passed 0.26 sec 418: RETVAL: 0 418: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-10.mha 418: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-11.mha @@ -22489,22 +23094,22 @@ 418: Setting nmax, mmax = 6591 83 418: >>> START 418: This problem is unconstrained. -418: [ 0, 0] MI -0.0060547 NV 729 GM 0.008 GN 0.0011 [ 0.157 s ] +418: [ 0, 0] MI -0.0060547 NV 729 GM 0.008 GN 0.0011 [ 0.046 s ] 418: CMIN 0.01 CAVG 0.01 CMAX 0.01 418: LSD 0.00 -418: [ 0, 1] MI -0.0496013 NV 569 GM -0.020 GN 0.00349 [ 0.103 s ] +418: [ 0, 1] MI -0.0496013 NV 569 GM -0.020 GN 0.00349 [ 0.029 s ] 418: CMIN -0.30 CAVG 0.01 CMAX 0.04 418: LSD 1.00 -418: [ 1, 2] MI -0.0061482 NV 729 GM 0.000 GN 0.00024 [ 0.086 s ] +418: [ 1, 2] MI -0.0061482 NV 729 GM 0.000 GN 0.00024 [ 0.024 s ] 418: CMIN -0.30 CAVG 0.01 CMAX 0.05 418: LSD 0.25 -418: [ 1, 3] MI -0.0496042 NV 569 GM -0.020 GN 0.00349 [ 0.088 s ] +418: [ 1, 3] MI -0.0496042 NV 569 GM -0.020 GN 0.00349 [ 0.019 s ] 418: CMIN -0.30 CAVG 0.01 CMAX 0.04 418: LSD 0.00 -418: [ 1, 4] MI -0.0496071 NV 569 GM -0.020 GN 0.00349 [ 0.100 s ] +418: [ 1, 4] MI -0.0496071 NV 569 GM -0.020 GN 0.00349 [ 0.026 s ] 418: CMIN -0.30 CAVG 0.01 CMAX 0.04 418: LSD 0.00 -418: [ 1, 5] MI -0.0020808 NV 629 GM -0.002 GN 0.000318 [ 0.112 s ] +418: [ 1, 5] MI -0.0020808 NV 629 GM -0.002 GN 0.000318 [ 0.018 s ] 418: CMIN -0.30 CAVG 0.01 CMAX 0.05 418: LSD 0.12 418: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -22530,54 +23135,15 @@ 418: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-img.mha 418: Saving vf... 418: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-a-vf.mha -418: Load: 0.147215 -418: Run: 0.690923 -418: Save: 0.1492 -418: Total: 0.987338 +418: Load: 0.08864 +418: Run: 0.174512 +418: Save: 0.028317 +418: Total: 0.291469 418: Finished! 418: 418: STDERR: 418: Not an error -564: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-4d-stats.stdout.txt -564: -- REGEX is AVE *([-0-9.]*) -564: -- LOWER_THRESH is 0.38 -564: -- UPPER_THRESH is 0.39 -564: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| -564: -- PARSED_VALUE=|0.386816| -564: Not an error -556/578 Test #453: plm-compose-c-warp .................... Passed 1.21 sec -557/578 Test #567: proton-dose-5a-check .................. Passed 0.15 sec -558/578 Test #418: plm-reg-roi-a ......................... Passed 1.42 sec -559/578 Test #564: proton-dose-4d-check .................. Passed 0.20 sec -499: RETVAL: 0 -499: STDOUT: bspline_xform_initialize -499: rdims = (5,5,5) -499: vox_per_rgn = (8,8,8) -499: cdims = (8 8 8) -499: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-pointset-b.txt -499: -499: STDERR: -499: Not an error -573: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-6a-stats.stdout.txt -573: -- REGEX is AVE *([-0-9.]*) -573: -- LOWER_THRESH is 0.26 -573: -- UPPER_THRESH is 0.27 -573: -- PARSED VALUE=|MIN 0.000000 AVE 0.266122 MAX 100.000000 NONZERO 932 NUMVOX 216000| -573: -- PARSED_VALUE=|0.266122| -573: Not an error -570: -- INFILE is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-5d-stats.stdout.txt -570: -- REGEX is AVE *([-0-9.]*) -570: -- LOWER_THRESH is 0.38 -570: -- UPPER_THRESH is 0.39 -570: -- PARSED VALUE=|MIN 0.000000 AVE 0.386816 MAX 100.000000 NONZERO 3614 NUMVOX 216000| -570: -- PARSED_VALUE=|0.386816| -570: Not an error -560/578 Test #499: plm-warp-pointset-b ................... Passed 1.05 sec -561/578 Test #573: proton-dose-6a-check .................. Passed 0.12 sec -562/578 Test #570: proton-dose-5d-check .................. Passed 0.17 sec -575: PLM_TEST_COMMAND is /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/plastimatch -575: PARMS is stats;/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/proton-dose-8d.mha -575: EXPECTED_ERRNO is +570/578 Test #418: plm-reg-roi-a ......................... Passed 0.66 sec 421: RETVAL: 0 421: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha 421: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha @@ -22611,48 +23177,48 @@ 421: Setting nmax, mmax = 864 31 421: >>> START 421: This problem is unconstrained. -421: [ 0, 0] SCORE 66568.047 NV 1690 GM 14792.900 GN 3.94e+03 [ 0.117 s ] -421: MSE 66568.047 RM 0.000 [ 0.073 | 0.044 ] +421: [ 0, 0] SCORE 66568.047 NV 1690 GM 14792.900 GN 3.94e+03 [ 0.037 s ] +421: MSE 66568.047 RM 0.000 [ 0.025 | 0.012 ] 421: CMIN 0.00 CAVG 0.00 CMAX 0.00 421: LSD 0.00 -421: [ 0, 1] SCORE 60779.625 NV 1690 GM 13427.228 GN 3.59e+03 [ 0.084 s ] -421: MSE 60779.609 RM 0.015 [ 0.036 | 0.048 ] +421: [ 0, 1] SCORE 60779.625 NV 1690 GM 13427.228 GN 3.59e+03 [ 0.052 s ] +421: MSE 60779.609 RM 0.015 [ 0.016 | 0.036 ] 421: CMIN -0.46 CAVG -0.00 CMAX 0.10 421: LSD 1.00 -421: [ 0, 2] SCORE 43202.340 NV 1690 GM 16992.866 GN 4.39e+03 [ 0.108 s ] -421: MSE 43201.965 RM 0.376 [ 0.022 | 0.086 ] +421: [ 0, 2] SCORE 43202.340 NV 1690 GM 16992.866 GN 4.39e+03 [ 0.037 s ] +421: MSE 43201.965 RM 0.376 [ 0.009 | 0.029 ] 421: CMIN -2.30 CAVG -0.02 CMAX 0.50 421: LSD 5.00 -421: [ 0, 3] SCORE 11325.080 NV 1619 GM -932.100 GN 1.45e+03 [ 0.061 s ] -421: MSE 11318.452 RM 6.628 [ 0.040 | 0.021 ] +421: [ 0, 3] SCORE 11325.080 NV 1619 GM -932.100 GN 1.45e+03 [ 0.035 s ] +421: MSE 11318.452 RM 6.628 [ 0.014 | 0.021 ] 421: CMIN -9.66 CAVG -0.09 CMAX 2.11 421: LSD 21.00 -421: [ 1, 4] SCORE 5165.491 NV 1647 GM 1195.560 GN 605 [ 0.103 s ] -421: MSE 5160.030 RM 5.461 [ 0.068 | 0.035 ] +421: [ 1, 4] SCORE 5165.491 NV 1647 GM 1195.560 GN 605 [ 0.036 s ] +421: MSE 5160.030 RM 5.461 [ 0.011 | 0.025 ] 421: CMIN -7.99 CAVG -0.09 CMAX 1.46 421: LSD 4.95 -421: [ 2, 5] SCORE 5370.420 NV 1649 GM -3582.381 GN 910 [ 0.096 s ] -421: MSE 5363.509 RM 6.911 [ 0.048 | 0.048 ] +421: [ 2, 5] SCORE 5370.420 NV 1649 GM -3582.381 GN 910 [ 0.033 s ] +421: MSE 5363.509 RM 6.911 [ 0.015 | 0.018 ] 421: CMIN -8.90 CAVG -0.10 CMAX 1.42 421: LSD 5.04 -421: [ 2, 6] SCORE 4305.869 NV 1649 GM -1305.969 GN 395 [ 0.108 s ] -421: MSE 4299.880 RM 5.989 [ 0.032 | 0.076 ] +421: [ 2, 6] SCORE 4305.869 NV 1649 GM -1305.969 GN 395 [ 0.014 s ] +421: MSE 4299.880 RM 5.989 [ 0.009 | 0.005 ] 421: CMIN -7.75 CAVG -0.10 CMAX 1.44 421: LSD 2.37 -421: [ 3, 7] SCORE 4280.987 NV 1653 GM 1734.354 GN 474 [ 0.080 s ] -421: MSE 4275.453 RM 5.534 [ 0.032 | 0.048 ] +421: [ 3, 7] SCORE 4280.987 NV 1653 GM 1734.354 GN 474 [ 0.014 s ] +421: MSE 4275.453 RM 5.534 [ 0.007 | 0.007 ] 421: CMIN -7.64 CAVG -0.09 CMAX 1.40 421: LSD 1.62 -421: [ 4, 8] SCORE 4194.305 NV 1651 GM 205.505 GN 129 [ 0.077 s ] -421: MSE 4188.512 RM 5.794 [ 0.032 | 0.045 ] +421: [ 4, 8] SCORE 4194.305 NV 1651 GM 205.505 GN 129 [ 0.028 s ] +421: MSE 4188.512 RM 5.794 [ 0.018 | 0.010 ] 421: CMIN -7.74 CAVG -0.10 CMAX 1.43 421: LSD 0.60 -421: [ 5, 9] SCORE 4196.242 NV 1645 GM 115.154 GN 112 [ 0.099 s ] -421: MSE 4190.442 RM 5.800 [ 0.046 | 0.052 ] +421: [ 5, 9] SCORE 4196.242 NV 1645 GM 115.154 GN 112 [ 0.019 s ] +421: MSE 4190.442 RM 5.800 [ 0.008 | 0.011 ] 421: CMIN -7.66 CAVG -0.10 CMAX 1.43 421: LSD 0.26 -421: [ 5, 10] SCORE 4195.648 NV 1649 GM 201.989 GN 124 [ 0.068 s ] -421: MSE 4189.854 RM 5.795 [ 0.036 | 0.032 ] +421: [ 5, 10] SCORE 4195.648 NV 1649 GM 201.989 GN 124 [ 0.012 s ] +421: MSE 4189.854 RM 5.795 [ 0.006 | 0.007 ] 421: CMIN -7.72 CAVG -0.10 CMAX 1.43 421: LSD 0.06 421: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -22683,141 +23249,15 @@ 421: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-img.mha 421: Saving vf... 421: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-d-vf.mha -421: Load: 0.073813 -421: Run: 1.03788 -421: Save: 0.104918 -421: Total: 1.21661 +421: Load: 0.167698 +421: Run: 0.331463 +421: Save: 0.0199392 +421: Total: 0.5191 421: Finished! 421: 421: STDERR: 421: Not an error -563/578 Test #421: plm-reg-roi-d ......................... Passed 1.59 sec -529: RETVAL: 0 -529: STDOUT: bspline_xform_initialize -529: rdims = (1,1,1) -529: vox_per_rgn = (4,4,4) -529: cdims = (4 4 4) -529: about to xform_convert -529: Converting to (itk) vector field -529: did xform_convert -529: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-c-vf.mha -529: -529: STDERR: -529: Not an error -500: RETVAL: 0 -500: STDOUT: Trying to save: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-warp-landmark-c.fcsv -500: -500: STDERR: -500: Not an error -564/578 Test #529: plm-xf-convert-c ...................... Passed 0.97 sec -565/578 Test #500: plm-warp-pointset-c ................... Passed 1.26 sec -442: RETVAL: 0 -442: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-2.mha -442: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-3.mha -442: Loading fixed pointset [1]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-convert-prefix-fcsv/sphere-7.fcsv -442: Loading moving image [1]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-dmap-b.mha -442: Launching registration worker thread -442: Inside registration worker thread -442: Doing registration stage -442: [1] xf_in->m_type = 0, xf_out->m_type = 0 -442: RESAMPLE 1 1: (1 1 1), (1 1 1) -442: RESAMPLE 1 1: (1 1 1), (1 1 1) -442: volume_calc_grad complete. -442: RESAMPLE 1 1: (1 1 1), (1 1 1) -442: volume_calc_grad complete. -442: bspline_xform_initialize -442: Warning: vox_per_rgn was less than 4. -442: Warning: vox_per_rgn was less than 4. -442: Warning: vox_per_rgn was less than 4. -442: rdims = (10,10,10) -442: vox_per_rgn = (4,4,4) -442: cdims = (13 13 13) -442: Algorithm flavor = g -442: Threading = 0 -442: >> Checking JH allocation -442: BSPLINE PARMS -442: max_its = 5 -442: max_feval = 5 -442: BSPLINE XFORM HEADER -442: vox_per_rgn = 4 4 4 -442: roi_offset = 0 0 0 -442: roi_dim = 38 38 38 -442: img_dc = 1 0 0 0 1 0 0 0 1 -442: BST METRICS -442: MET 110100 MSE 1.000000 -442: MET 010100 PDM 30.000000 -442: Setting nmax, mmax = 6591 83 -442: >>> START -442: This problem is unconstrained. -442: [ 0, 0] SCORE 5752.552 NV 54872 GM 5.543 GN 45.1 [ 0.133 s ] -442: MSE 5540.166 PDM 7.0795197 CMIN 0.00 CAVG 0.00 CMAX 0.00 -442: LSD 0.00 -442: [ 0, 1] SCORE 5663.708 NV 54872 GM 0.170 GN 43.8 [ 0.062 s ] -442: MSE 5452.803 PDM 7.0301509 CMIN -0.20 CAVG -0.00 CMAX 0.16 -442: LSD 1.00 -442: [ 0, 2] SCORE 5319.446 NV 54872 GM -0.447 GN 42 [ 0.056 s ] -442: MSE 5114.376 PDM 6.8356566 CMIN -1.00 CAVG -0.00 CMAX 0.78 -442: LSD 5.00 -442: [ 0, 3] SCORE 4111.230 NV 54872 GM -2.786 GN 35.2 [ 0.030 s ] -442: MSE 3928.063 PDM 6.1055741 CMIN -4.21 CAVG -0.00 CMAX 3.26 -442: LSD 21.00 -442: [ 1, 4] SCORE 1404.270 NV 54872 GM 1.576 GN 10.3 [ 0.046 s ] -442: MSE 1228.705 PDM 5.8521819 CMIN -19.53 CAVG 0.01 CMAX 16.23 -442: LSD 76.08 -442: [ 2, 5] SCORE 1282.464 NV 54872 GM 13.580 GN 4.68 [ 0.069 s ] -442: MSE 1058.280 PDM 7.4727950 CMIN -25.04 CAVG 0.01 CMAX 19.49 -442: LSD 32.00 -442: [2] xf_out->m_type = 9, xf_in->m_type = 0 -442: ** Registration worker thread finished. -442: Warping... -442: Running: plm_warp_native -442: Converting input image... -442: Converting xform... -442: bspline_xform_initialize -442: rdims = (10,10,10) -442: vox_per_rgn = (4,4,4) -442: cdims = (13 13 13) -442: Creating output vf... -442: Creating output volume... -442: Running native warper... -442: bspline_warp complete. -442: Back convert to original type... -442: > Convert vf to itk -442: > Conversion complete. -442: plm_warp_native is complete. -442: Saving image... -442: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-img.nrrd -442: Saving vf... -442: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-point-dmap-a-vf.nrrd -442: Load: 0.329576 -442: Run: 0.455638 -442: Save: 0.26085 -442: Total: 1.04606 -442: Finished! -442: -442: STDERR: -442: Not an error -566/578 Test #442: plm-reg-point-dmap-a .................. Passed 1.56 sec -538: RETVAL: 0 -538: STDOUT: Loading fixed... -538: Loading moving... -538: Saving sro -538: ITK_AFF_OFF -538: 20.000000 0.000000 0.000000 -538: SRO -538: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0 -538: Trying to save SRO: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-f/sro.dcm -538: Done saving sro -538: -538: STDERR: -538: Not an error -567/578 Test #538: plm-xf-convert-f ...................... Passed 1.02 sec -575: RETVAL: 0 -575: STDOUT: MIN 0.000000 AVE 0.000000 MAX 0.000000 NONZERO 0 NUMVOX 216000 -575: -575: STDERR: -575: Not an error -568/578 Test #575: proton-dose-8d-stats .................. Passed 0.48 sec +571/578 Test #421: plm-reg-roi-d ......................... Passed 0.67 sec 423: RETVAL: 0 423: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rect-19.mha 423: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/sphere-4.mha @@ -22854,28 +23294,28 @@ 423: Setting nmax, mmax = 1536 41 423: >>> START 423: This problem is unconstrained. -423: [ 0, 0] SCORE 74227.273 NV 6859 GM 0.000 GN 188 [ 0.199 s ] -423: MSE 74227.273 RM 0.000 [ 0.074 | 0.124 ] +423: [ 0, 0] SCORE 74227.273 NV 6859 GM 0.000 GN 188 [ 0.081 s ] +423: MSE 74227.273 RM 0.000 [ 0.039 | 0.042 ] 423: CMIN 0.00 CAVG 0.00 CMAX 0.00 423: LSD 0.00 -423: [ 0, 1] SCORE 73948.398 NV 6859 GM 0.045 GN 187 [ 0.258 s ] -423: MSE 73948.391 RM 0.010 [ 0.018 | 0.240 ] +423: [ 0, 1] SCORE 73948.398 NV 6859 GM 0.045 GN 187 [ 0.051 s ] +423: MSE 73948.391 RM 0.010 [ 0.009 | 0.042 ] 423: CMIN -0.14 CAVG -0.00 CMAX 0.15 423: LSD 1.00 -423: [ 0, 2] SCORE 72846.922 NV 6859 GM 0.264 GN 183 [ 0.258 s ] -423: MSE 72846.680 RM 0.242 [ 0.030 | 0.227 ] +423: [ 0, 2] SCORE 72846.922 NV 6859 GM 0.264 GN 183 [ 0.036 s ] +423: MSE 72846.680 RM 0.242 [ 0.006 | 0.031 ] 423: CMIN -0.69 CAVG -0.00 CMAX 0.76 423: LSD 5.00 -423: [ 0, 3] SCORE 68660.922 NV 6859 GM 1.168 GN 166 [ 0.250 s ] -423: MSE 68656.656 RM 4.268 [ 0.056 | 0.193 ] +423: [ 0, 3] SCORE 68660.922 NV 6859 GM 1.168 GN 166 [ 0.029 s ] +423: MSE 68656.656 RM 4.268 [ 0.004 | 0.024 ] 423: CMIN -2.91 CAVG -0.00 CMAX 3.18 423: LSD 21.00 -423: [ 1, 4] SCORE 42095.320 NV 6859 GM -11.876 GN 58.8 [ 0.164 s ] -423: MSE 41780.070 RM 315.248 [ 0.017 | 0.147 ] +423: [ 1, 4] SCORE 42095.320 NV 6859 GM -11.876 GN 58.8 [ 0.027 s ] +423: MSE 41780.070 RM 315.248 [ 0.002 | 0.024 ] 423: CMIN -25.44 CAVG -0.01 CMAX 25.37 423: LSD 160.09 -423: [ 2, 5] SCORE 33075.488 NV 6859 GM 41.190 GN 77.9 [ 0.140 s ] -423: MSE 32300.393 RM 775.097 [ 0.031 | 0.109 ] +423: [ 2, 5] SCORE 33075.488 NV 6859 GM 41.190 GN 77.9 [ 0.027 s ] +423: MSE 32300.393 RM 775.097 [ 0.002 | 0.024 ] 423: CMIN -39.12 CAVG 0.00 CMAX 38.06 423: LSD 114.34 423: [2] xf_out->m_type = 9, xf_in->m_type = 0 @@ -22906,419 +23346,15 @@ 423: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a-img.mha 423: Saving vf... 423: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-stiffness-a-vf.mha -423: Load: 0.0921731 -423: Run: 1.34698 -423: Save: 0.100891 -423: Total: 1.54004 +423: Load: 0.130421 +423: Run: 0.262933 +423: Save: 0.012228 +423: Total: 0.405582 423: Finished! 423: 423: STDERR: 423: Not an error -569/578 Test #423: plm-reg-stiffness-a ................... Passed 1.88 sec -422: RETVAL: 0 -422: STDOUT: Loading fixed image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-01.mha -422: Loading moving image [0]: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/rectarr-02.mha -422: Launching registration worker thread -422: Inside registration worker thread -422: Doing registration stage -422: [1] xf_in->m_type = 0, xf_out->m_type = 0 -422: Fixed image for this stage: -422: Dim = 15 25 15 -422: Origin = -14 -24 -14 -422: Spacing = 2 2 2 -422: Direction Cosines = -422: 1 0 0 -422: 0 1 0 -422: 0 0 1 -422: Moving image for this stage: -422: Dim = 15 25 15 -422: Origin = -14 -24 -14 -422: Spacing = 2 2 2 -422: Direction Cosines = -422: 1 0 0 -422: 0 1 0 -422: 0 0 1 -422: Initial Parameters = [0, 0, 0] -422: Starting ITK registration -422: StartEvent: [0, 0, 0] -422: MSE [ 0, 0, 1.00] 20000.000 [-0.9999999727511648, 0.00023344735891123153, 0] -422: :: [0, 0, 0] -422: * -422: MSE [ 1, 1, 1.00] 16666.407 [-1.9999999583532024, 0.00006375373999511431, -8.14734184032526e-17] -3333.59 -422: :: [-0.9999999727511648, 0.00023344735891123153, 0] -422: * -422: MSE [ 2, 2, 1.00] 21428.450 [-2.999999953945063, 0.0001576487826736816, 1.006210680358186e-16] 4762.04 -422: MSE [ 3, 3, 0.50] 17856.955 [-2.499999978937018, -4.3965600472683163e-7, 1.093078281828519e-16] -3571.49 -422: MSE [ 4, 4, 0.50] 18749.999 [-1.999999979024236, -0.000009778710908826775, 8.695921872043329e-17] 893.04 -422: MSE [ 5, 5, 0.25] 21428.553 [-2.249999944663833, 0.00012129455271898212, 9.346259258675507e-17] 2678.55 -422: MSE [ 6, 6, 0.12] 19865.879 [-2.1250000509246822, -0.000041693793540373056, 1.3705287885551183e-16] -1562.67 -422: MSE [ 7, 7, 0.06] 20591.445 [-2.187499942399231, 0.00007477796101175464, 1.111228743924062e-16] 725.57 -422: MSE [ 8, 8, 0.03] 20214.720 [-2.1562503690872257, -0.00008852487918595851, 4.664733937652436e-16] -376.73 -422: MSE [ 9, 9, 0.02] 20399.540 [-2.1718751050913467, 0.0000023035388793795497, 4.664733937652436e-16] 184.82 -422: EndEvent: [-2.1718751050913467, 0.0000023035388793795497, 4.664733937652436e-16] -422: RegularStepGradientDescentOptimizer: Maximum number of iterations (10) exceeded. -422: ITK registration complete -422: [2] xf_out->m_type = 1, xf_in->m_type = 0 -422: Doing registration stage -422: [1] xf_in->m_type = 1, xf_out->m_type = 0 -422: RESAMPLE 1 1: (2 2 2), (2 2 2) -422: RESAMPLE 1 1: (2 2 2), (2 2 2) -422: volume_calc_grad complete. -422: bspline_xform_initialize -422: rdims = (3,5,3) -422: vox_per_rgn = (5,5,5) -422: cdims = (6 8 6) -422: Algorithm flavor = g -422: Threading = 0 -422: Regularization: flavor = c lambda = 0.100000 -422: Regularizer initialized -422: >> Checking JH allocation -422: BSPLINE PARMS -422: max_its = 5 -422: max_feval = 5 -422: BSPLINE XFORM HEADER -422: vox_per_rgn = 5 5 5 -422: roi_offset = 0 0 0 -422: roi_dim = 15 25 15 -422: img_dc = 1 0 0 0 1 0 0 0 1 -422: BST METRICS -422: MET 110100 MSE 1.000000 -422: Setting nmax, mmax = 864 31 -422: >>> START -422: This problem is unconstrained. -422: [ 0, 0] SCORE 17856.865 NV 5250 GM 596.305 GN 997 [ 0.167 s ] -422: MSE 17856.865 RM 0.000 [ 0.132 | 0.035 ] -422: CMIN -1.00 CAVG -0.33 CMAX 0.00 -422: LSD 0.00 -422: [ 0, 1] SCORE 15761.621 NV 5415 GM 4002.270 GN 1.58e+03 [ 0.092 s ] -422: MSE 15761.603 RM 0.019 [ 0.032 | 0.060 ] -422: CMIN -1.35 CAVG -0.33 CMAX 0.11 -422: LSD 1.00 -422: [ 0, 2] SCORE 11419.833 NV 5415 GM 3904.956 GN 1.2e+03 [ 0.092 s ] -422: MSE 11419.360 RM 0.473 [ 0.052 | 0.040 ] -422: CMIN -2.76 CAVG -0.34 CMAX 0.57 -422: LSD 5.00 -422: [ 0, 3] SCORE 11865.492 NV 5349 GM 4432.436 GN 1.31e+03 [ 0.085 s ] -422: MSE 11857.157 RM 8.335 [ 0.040 | 0.046 ] -422: CMIN -8.39 CAVG -0.35 CMAX 4.37 -422: LSD 21.00 -422: [ 1, 4] SCORE 2624.840 NV 5330 GM 1520.288 GN 405 [ 0.099 s ] -422: MSE 2620.351 RM 4.489 [ 0.058 | 0.040 ] -422: CMIN -7.51 CAVG -0.37 CMAX 1.81 -422: LSD 7.90 -422: [ 2, 5] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.091 s ] -422: MSE 2064.967 RM 5.786 [ 0.039 | 0.052 ] -422: CMIN -8.62 CAVG -0.39 CMAX 1.40 -422: LSD 4.35 -422: [2] xf_out->m_type = 9, xf_in->m_type = 1 -422: Doing registration stage -422: [1] xf_in->m_type = 9, xf_out->m_type = 0 -422: RESAMPLE 1 1: (2 2 2), (2 2 2) -422: RESAMPLE 1 1: (2 2 2), (2 2 2) -422: volume_calc_grad complete. -422: bspline_xform_initialize -422: rdims = (3,5,3) -422: vox_per_rgn = (5,5,5) -422: cdims = (6 8 6) -422: Algorithm flavor = g -422: Threading = 0 -422: Regularization: flavor = c lambda = 0.100000 -422: Regularizer initialized -422: >> Checking JH allocation -422: BSPLINE PARMS -422: max_its = 5 -422: max_feval = 5 -422: BSPLINE XFORM HEADER -422: vox_per_rgn = 5 5 5 -422: roi_offset = 0 0 0 -422: roi_dim = 15 25 15 -422: img_dc = 1 0 0 0 1 0 0 0 1 -422: BST METRICS -422: MET 110100 MSE 1.000000 -422: Setting nmax, mmax = 864 31 -422: >>> START -422: This problem is unconstrained. -422: [ 0, 0] SCORE 2070.753 NV 5316 GM -1231.525 GN 432 [ 0.074 s ] -422: MSE 2064.967 RM 5.786 [ 0.038 | 0.036 ] -422: CMIN -8.62 CAVG -0.39 CMAX 1.40 -422: LSD 0.00 -422: [ 0, 1] SCORE 1741.366 NV 5318 GM -709.336 GN 291 [ 0.049 s ] -422: MSE 1736.001 RM 5.365 [ 0.032 | 0.018 ] -422: CMIN -8.13 CAVG -0.39 CMAX 1.38 -422: LSD 1.00 -422: [ 1, 2] SCORE 1448.726 NV 5351 GM 553.138 GN 184 [ 0.106 s ] -422: MSE 1444.063 RM 4.664 [ 0.074 | 0.032 ] -422: CMIN -7.05 CAVG -0.38 CMAX 1.33 -422: LSD 2.47 -422: [ 2, 3] SCORE 1411.069 NV 5344 GM 258.307 GN 92.3 [ 0.049 s ] -422: MSE 1406.122 RM 4.946 [ 0.032 | 0.017 ] -422: CMIN -7.20 CAVG -0.39 CMAX 1.33 -422: LSD 0.62 -422: [ 3, 4] SCORE 1391.029 NV 5340 GM -132.885 GN 63.2 [ 0.071 s ] -422: MSE 1385.782 RM 5.247 [ 0.028 | 0.042 ] -422: CMIN -7.41 CAVG -0.39 CMAX 1.30 -422: LSD 0.81 -422: [ 4, 5] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.046 s ] -422: MSE 1375.316 RM 5.240 [ 0.020 | 0.027 ] -422: CMIN -7.42 CAVG -0.39 CMAX 1.30 -422: LSD 0.36 -422: [2] xf_out->m_type = 9, xf_in->m_type = 9 -422: Doing registration stage -422: [1] xf_in->m_type = 9, xf_out->m_type = 0 -422: RESAMPLE 1 1: (2 2 2), (2 2 2) -422: RESAMPLE 1 1: (2 2 2), (2 2 2) -422: volume_calc_grad complete. -422: bspline_xform_initialize -422: rdims = (3,5,3) -422: vox_per_rgn = (5,5,5) -422: cdims = (6 8 6) -422: Algorithm flavor = g -422: Threading = 0 -422: Regularization: flavor = c lambda = 0.100000 -422: Regularizer initialized -422: >> Checking JH allocation -422: BSPLINE PARMS -422: max_its = 5 -422: max_feval = 5 -422: BSPLINE XFORM HEADER -422: vox_per_rgn = 5 5 5 -422: roi_offset = 0 0 0 -422: roi_dim = 15 25 15 -422: img_dc = 1 0 0 0 1 0 0 0 1 -422: BST METRICS -422: MET 110100 MSE 1.000000 -422: Setting nmax, mmax = 864 31 -422: >>> START -422: This problem is unconstrained. -422: [ 0, 0] SCORE 1380.556 NV 5338 GM 21.541 GN 39.1 [ 0.034 s ] -422: MSE 1375.316 RM 5.240 [ 0.013 | 0.020 ] -422: CMIN -7.42 CAVG -0.39 CMAX 1.30 -422: LSD 0.00 -422: [ 0, 1] SCORE 1360.810 NV 5336 GM 259.462 GN 115 [ 0.029 s ] -422: MSE 1355.755 RM 5.056 [ 0.016 | 0.014 ] -422: CMIN -7.23 CAVG -0.39 CMAX 1.32 -422: LSD 1.00 -422: [ 0, 2] SCORE 1363.081 NV 5336 GM 215.275 GN 64.4 [ 0.026 s ] -422: MSE 1357.933 RM 5.148 [ 0.010 | 0.016 ] -422: CMIN -7.33 CAVG -0.39 CMAX 1.31 -422: LSD 0.47 -422: [ 1, 3] SCORE 1355.968 NV 5336 GM 93.286 GN 47.5 [ 0.029 s ] -422: MSE 1350.760 RM 5.209 [ 0.012 | 0.017 ] -422: CMIN -7.36 CAVG -0.39 CMAX 1.31 -422: LSD 0.24 -422: [ 2, 4] SCORE 1327.456 NV 5313 GM -133.711 GN 39.2 [ 0.042 s ] -422: MSE 1321.881 RM 5.575 [ 0.014 | 0.028 ] -422: CMIN -7.53 CAVG -0.39 CMAX 1.33 -422: LSD 1.49 -422: [ 3, 5] SCORE 1315.612 NV 5295 GM -129.321 GN 46.1 [ 0.036 s ] -422: MSE 1309.647 RM 5.965 [ 0.012 | 0.024 ] -422: CMIN -7.65 CAVG -0.40 CMAX 1.39 -422: LSD 1.60 -422: [2] xf_out->m_type = 9, xf_in->m_type = 9 -422: RESTORE NATIVE RESOLUTION: (2 2 2), (1 1 1) -422: bspline_xform_initialize -422: rdims = (3,5,3) -422: vox_per_rgn = (10,10,10) -422: cdims = (6 8 6) -422: ** Registration worker thread finished. -422: Writing transformation ... -422: Warping... -422: Running: plm_warp_native -422: Converting input image... -422: Converting xform... -422: bspline_xform_initialize -422: rdims = (3,5,3) -422: vox_per_rgn = (10,10,10) -422: cdims = (6 8 6) -422: Creating output vf... -422: Creating output volume... -422: Running native warper... -422: bspline_warp complete. -422: Back convert to original type... -422: > Convert vf to itk -422: > Conversion complete. -422: plm_warp_native is complete. -422: Saving image... -422: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-img.mha -422: Saving vf... -422: Trying to write image to /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-reg-roi-e-vf.mha -422: Load: 0.0777709 -422: Run: 1.46029 -422: Save: 0.0411041 -422: Total: 1.57917 -422: Finished! -422: -422: STDERR: -422: Not an error -570/578 Test #422: plm-reg-roi-e ......................... Passed 1.93 sec -539: RETVAL: 0 -539: STDOUT: Loading fixed... -539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4288RTDOSE -539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4289RTSTRUCT -539: Found DCM_ReferencedFrameOfReferenceSequence! -539: Found DCM_RTReferencedStudySequence! -539: Trying to load rt dose. -539: Load: DoseGridScaling = 0.000000 -539: RTDOSE: dim = 38 38 38 -539: ipp = -243.421005 -243.421005 -243.421005 -539: spc = 13.157900 13.157900 13.157900 -539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -539: Bits_alloc: 32 -539: Bits_stored: 32 -539: High_bit: 31 -539: Pixel_rep: 0 -539: rc = 1, length = 109744, npix = 54872 -539: Trying to load rt structure set. -539: Adding structure (1), Foreground -539: Structure 1 has color 255\0\0 -539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4288RTDOSE -539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4289RTSTRUCT -539: Found DCM_ReferencedFrameOfReferenceSequence! -539: Found DCM_RTReferencedStudySequence! -539: Trying to load rt dose. -539: Load: DoseGridScaling = 0.000000 -539: RTDOSE: dim = 38 38 38 -539: ipp = -243.421005 -243.421005 -243.421005 -539: spc = 13.157900 13.157900 13.157900 -539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -539: Bits_alloc: 32 -539: Bits_stored: 32 -539: High_bit: 31 -539: Pixel_rep: 0 -539: rc = 1, length = 109744, npix = 54872 -539: Trying to load rt structure set. -539: Adding structure (1), Foreground -539: Structure 1 has color 255\0\0 -539: Loading moving... -539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648598.1717448213.87261RTDOSE -539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648598.1717448213.87262RTSTRUCT -539: Found DCM_ReferencedFrameOfReferenceSequence! -539: Found DCM_RTReferencedStudySequence! -539: Trying to load rt dose. -539: Load: DoseGridScaling = 0.000000 -539: RTDOSE: dim = 38 38 38 -539: ipp = -243.421005 -243.421005 -243.421005 -539: spc = 13.157900 13.157900 13.157900 -539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -539: Bits_alloc: 32 -539: Bits_stored: 32 -539: High_bit: 31 -539: Pixel_rep: 0 -539: rc = 1, length = 109744, npix = 54872 -539: Trying to load rt structure set. -539: Adding structure (1), Foreground -539: Structure 1 has color 255\0\0 -539: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648598.1717448213.87261RTDOSE -539: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648598.1717448213.87262RTSTRUCT -539: Found DCM_ReferencedFrameOfReferenceSequence! -539: Found DCM_RTReferencedStudySequence! -539: Trying to load rt dose. -539: Load: DoseGridScaling = 0.000000 -539: RTDOSE: dim = 38 38 38 -539: ipp = -243.421005 -243.421005 -243.421005 -539: spc = 13.157900 13.157900 13.157900 -539: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -539: Bits_alloc: 32 -539: Bits_stored: 32 -539: High_bit: 31 -539: Pixel_rep: 0 -539: rc = 1, length = 109744, npix = 54872 -539: Trying to load rt structure set. -539: Adding structure (1), Foreground -539: Structure 1 has color 255\0\0 -539: Saving sro -539: Trying to save SRO: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-g/dro.dcm -539: Done saving sro -539: -539: STDERR: -539: Not an error -571/578 Test #539: plm-xf-convert-g ...................... Passed 1.16 sec -537: RETVAL: 0 -537: STDOUT: Loading fixed... -537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648598.1717448213.87261RTDOSE -537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648598.1717448213.87262RTSTRUCT -537: Found DCM_ReferencedFrameOfReferenceSequence! -537: Found DCM_RTReferencedStudySequence! -537: Trying to load rt dose. -537: Load: DoseGridScaling = 0.000000 -537: RTDOSE: dim = 38 38 38 -537: ipp = -243.421005 -243.421005 -243.421005 -537: spc = 13.157900 13.157900 13.157900 -537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -537: Bits_alloc: 32 -537: Bits_stored: 32 -537: High_bit: 31 -537: Pixel_rep: 0 -537: rc = 1, length = 109744, npix = 54872 -537: Trying to load rt structure set. -537: Adding structure (1), Foreground -537: Structure 1 has color 255\0\0 -537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648598.1717448213.87261RTDOSE -537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648598.1717448213.87262RTSTRUCT -537: Found DCM_ReferencedFrameOfReferenceSequence! -537: Found DCM_RTReferencedStudySequence! -537: Trying to load rt dose. -537: Load: DoseGridScaling = 0.000000 -537: RTDOSE: dim = 38 38 38 -537: ipp = -243.421005 -243.421005 -243.421005 -537: spc = 13.157900 13.157900 13.157900 -537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -537: Bits_alloc: 32 -537: Bits_stored: 32 -537: High_bit: 31 -537: Pixel_rep: 0 -537: rc = 1, length = 109744, npix = 54872 -537: Trying to load rt structure set. -537: Adding structure (1), Foreground -537: Structure 1 has color 255\0\0 -537: Loading moving... -537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4288RTDOSE -537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4289RTSTRUCT -537: Found DCM_ReferencedFrameOfReferenceSequence! -537: Found DCM_RTReferencedStudySequence! -537: Trying to load rt dose. -537: Load: DoseGridScaling = 0.000000 -537: RTDOSE: dim = 38 38 38 -537: ipp = -243.421005 -243.421005 -243.421005 -537: spc = 13.157900 13.157900 13.157900 -537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -537: Bits_alloc: 32 -537: Bits_stored: 32 -537: High_bit: 31 -537: Pixel_rep: 0 -537: rc = 1, length = 109744, npix = 54872 -537: Trying to load rt structure set. -537: Adding structure (1), Foreground -537: Structure 1 has color 255\0\0 -537: Found RTDOSE, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4288RTDOSE -537: Found RTSTUCT, UID=1.2.826.0.1.3680043.8.274.1.1.8323329.1648586.1717448213.4289RTSTRUCT -537: Found DCM_ReferencedFrameOfReferenceSequence! -537: Found DCM_RTReferencedStudySequence! -537: Trying to load rt dose. -537: Load: DoseGridScaling = 0.000000 -537: RTDOSE: dim = 38 38 38 -537: ipp = -243.421005 -243.421005 -243.421005 -537: spc = 13.157900 13.157900 13.157900 -537: dc = 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -537: Bits_alloc: 32 -537: Bits_stored: 32 -537: High_bit: 31 -537: Pixel_rep: 0 -537: rc = 1, length = 109744, npix = 54872 -537: Trying to load rt structure set. -537: Adding structure (1), Foreground -537: Structure 1 has color 255\0\0 -537: Saving sro -537: ITK_AFF_OFF -537: 20.000000 0.000000 0.000000 -537: SRO -537: 1.000000\0.000000\0.000000\-20.000000\0.000000\1.000000\0.000000\-0.000000\0.000000\0.000000\1.000000\-0.000000\0.0\0.0\0.0\1.0 -537: Trying to save SRO: /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/plm-xf-convert-e/sro.dcm -537: Done saving sro -537: -537: STDERR: -537: Not an error -572/578 Test #537: plm-xf-convert-e ...................... Passed 1.24 sec +572/578 Test #423: plm-reg-stiffness-a ................... Passed 0.89 sec 576: RETVAL: 0 576: STDOUT: Skin file defined. Modifying input ct... 576: FPD = 320.500029, BPD = 821.195355 @@ -23332,7 +23368,7 @@ 576: 576: STDERR: 576: Not an error -573/578 Test #576: wed-a ................................. Passed 4.46 sec +573/578 Test #576: wed-a ................................. Passed 2.37 sec test 577 Start 577: wed-b @@ -23364,7 +23400,7 @@ 578: 578: STDERR: 578: Not an error -574/578 Test #578: wed-c ................................. Passed 1.05 sec +574/578 Test #578: wed-c ................................. Passed 0.60 sec 577: RETVAL: 0 577: STDOUT: Loading rpl 577: -> /build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu/Testing/wed-a-proj-wed.rpl @@ -23383,7 +23419,7 @@ 577: 577: STDERR: 577: Not an error -575/578 Test #577: wed-b ................................. Passed 2.26 sec +575/578 Test #577: wed-b ................................. Passed 1.25 sec 471: RETVAL: 0 471: STDOUT: Contrast threshold = 0.030000 471: Curvature threshold = 172.302505 @@ -23600,7 +23636,7 @@ 471: 471: STDERR: 471: Not an error -576/578 Test #471: plm-sift-a ............................ Passed 11.76 sec +576/578 Test #471: plm-sift-a ............................ Passed 4.69 sec test 472 Start 472: plm-sift-a-check-1 @@ -23629,12 +23665,12 @@ 473: -- LENGTH=20 473: -- |-7.500,7.500,-22.500|-7.500,7.500,-22.500| 473: Not an error -577/578 Test #472: plm-sift-a-check-1 .................... Passed 0.03 sec -578/578 Test #473: plm-sift-a-check-2 .................... Passed 0.03 sec +577/578 Test #472: plm-sift-a-check-1 .................... Passed 0.01 sec +578/578 Test #473: plm-sift-a-check-2 .................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 578 -Total Test time (real) = 29.79 sec +Total Test time (real) = 9.45 sec make[2]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1' create-stamp debian/debhelper-build-stamp @@ -23642,7 +23678,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1' dh_auto_install - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/plastimatch-1.9.4\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/plastimatch-1.9.4\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/plastimatch-1.9.4+dfsg.1 -B/build/reproducible-path/plastimatch-1.9.4+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -23870,197 +23906,197 @@ removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libnkidecompress.a' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/libspecfun.a' rm -rfv /build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake' removed directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch' removed directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/lib/cmake' rm -rfv /build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/zcrop.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_stats.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/beam_geometry.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xf_invert.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_intersect.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/beam_geometry.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_stats.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_intersect.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_header.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xf_invert.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_fill.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_union.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h' -removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/zcrop.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h' removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_header.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h' +removed '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h' removed directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include/plastimatch' removed directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1/debian/plastimatch/usr/include' make[1]: Leaving directory '/build/reproducible-path/plastimatch-1.9.4+dfsg.1' @@ -24094,12 +24130,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3145059/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3145059/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1521056 and its subdirectories -I: Current time: Mon Jun 3 08:59:09 -12 2024 -I: pbuilder-time-stamp: 1717448349 +I: removing directory /srv/workspace/pbuilder/3145059 and its subdirectories +I: Current time: Mon Jul 7 17:30:08 +14 2025 +I: pbuilder-time-stamp: 1751859008