Diff of the two buildlogs: -- --- b1/build.log 2024-05-20 18:28:07.876170577 +0000 +++ b2/build.log 2024-05-20 19:00:02.398719127 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 22 12:41:02 -12 2025 -I: pbuilder-time-stamp: 1750639262 +I: Current time: Tue May 21 08:28:13 +14 2024 +I: pbuilder-time-stamp: 1716229693 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3919119/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/530769/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 20 18:28 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/530769/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/530769/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='6b28f16e138c48b8a9f9034817eba202' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3919119' - PS1='# ' - PS2='> ' + INVOCATION_ID=005fdba5739740569f1df95ff142de2b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=530769 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6B3iwRNg/pbuilderrc_iRz3 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6B3iwRNg/b1 --logfile b1/build.log mmseqs2_15-6f452+ds-2.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6B3iwRNg/pbuilderrc_IwIG --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6B3iwRNg/b2 --logfile b2/build.log mmseqs2_15-6f452+ds-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 21 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3919119/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 19 07:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/530769/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -190,7 +222,7 @@ Get: 64 http://deb.debian.org/debian unstable/main amd64 libxxhash-dev amd64 0.8.2-2+b1 [79.3 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.5+dfsg2-2 [358 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] -Fetched 37.7 MB in 4s (10.4 MB/s) +Fetched 37.7 MB in 4s (9990 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19718 files and directories currently installed.) @@ -469,7 +501,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mmseqs2-15-6f452+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_15-6f452+ds-2_source.changes +I: user script /srv/workspace/pbuilder/530769/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/530769/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mmseqs2-15-6f452+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmseqs2_15-6f452+ds-2_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 15-6f452+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -547,8 +583,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (4.8s) --- Generating done (0.1s) +-- Configuring done (7.7s) +-- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: @@ -616,7 +652,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (5.4s) +-- Configuring done (9.4s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -685,8 +721,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (3.7s) --- Generating done (0.2s) +-- Configuring done (8.3s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -754,7 +790,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (5.6s) +-- Configuring done (16.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -823,8 +859,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (2.8s) --- Generating done (0.1s) +-- Configuring done (12.4s) +-- Generating done (0.5s) CMake Warning: Manually-specified variables were not used by the project: @@ -894,8 +930,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (2.9s) --- Generating done (0.1s) +-- Configuring done (13.6s) +-- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: @@ -914,7 +950,7 @@ make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/debian/mmseqs2/usr/bin dh_auto_build --builddirectory build_avx2 && dh_auto_build --builddirectory build_avx && dh_auto_build --builddirectory build_sse4.1 && dh_auto_build --builddirectory build_ssse3 && dh_auto_build --builddirectory build_sse3 && true - cd build_avx2 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx2 && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/CMakeFiles /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2//CMakeFiles/progress.marks @@ -926,422 +962,428 @@ make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend +make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake "--color=" +make -f src/version/CMakeFiles/version.dir/build.make 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+cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h +[ 8%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp -[ 12%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h +[ 11%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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/build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h +/usr/bin/ranlib libversion.a +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +[ 11%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp +[ 12%] Built target version +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h +[ 12%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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/build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h [ 13%] Generating ../generated/Library255_may17.lib.h -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 13%] Generating ../generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 13%] Generating ../generated/libPolished_8.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 14%] Generating ../generated/cs219.lib.h +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h +/usr/bin/ranlib libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 13%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -[ 13%] Generating ../generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 373 | ret->bound = s->bound; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:372:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 93 | ret->type = type; + | ~~~~~~~~~~^~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h.tmp +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 367 | ret->value = s->value; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 446 | ret->value = NAN; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:444:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 15%] Generating ../generated/easyrbh.sh.h -[ 17%] Generating ../generated/easytaxonomy.sh.h -[ 16%] Generating ../generated/easycluster.sh.h -[ 18%] Generating ../generated/krona_prelude.html.h -[ 18%] Generating ../generated/blastp.sh.h -[ 16%] Generating ../generated/libPolished_8.lib.h -[ 16%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 18%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 16%] Generating ../generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h +[ 14%] Built target microtar +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h +[ 15%] Generating ../generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 16%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h +[ 16%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h +[ 16%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h +[ 16%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp +[ 17%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp +[ 18%] Generating ../generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h [ 18%] Generating ../generated/blastpgp.sh.h -[ 19%] Linking CXX static library libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h -[ 19%] Generating ../generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h +[ 18%] Generating ../generated/map.sh.h +[ 19%] Generating ../generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh -[ 19%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 20%] Generating ../generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh -[ 20%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -[ 23%] Generating ../generated/searchtargetprofile.sh.h -[ 23%] Generating ../generated/cascaded_clustering.sh.h -[ 23%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +[ 20%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp +[ 20%] Generating ../generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 21%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh +[ 21%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h.tmp +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +[ 22%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh +/usr/bin/ranlib libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h -[ 24%] Generating ../generated/createindex.sh.h -[ 24%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h.tmp -/usr/bin/ranlib libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h.tmp +[ 22%] Built target tinyexpr cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +[ 23%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 24%] Generating ../generated/translated_search.sh.h +[ 24%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 25%] Generating ../generated/createindex.sh.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +[ 25%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +[ 25%] Built target cacode +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp +[ 26%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated [ 26%] Generating ../generated/taxpercontig.sh.h -[ 26%] Generating ../generated/multihitdb.sh.h -[ 26%] Built target version -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h +[ 27%] Generating ../generated/enrich.sh.h +[ 27%] Generating ../generated/multihitdb.sh.h +[ 27%] Generating ../generated/blastn.sh.h +[ 27%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh -[ 26%] Generating ../generated/multihitsearch.sh.h -[ 26%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -[ 26%] Generating ../generated/enrich.sh.h -/usr/bin/ranlib libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 373 | ret->bound = s->bound; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:372:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 93 | ret->type = type; - | ~~~~~~~~~~^~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 367 | ret->value = s->value; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 446 | ret->value = NAN; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:444:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -[ 26%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h +[ 27%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h -[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 26%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h.tmp -[ 26%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h -[ 26%] Generating ../generated/linsearch.sh.h +[ 27%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 26%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h.tmp +[ 28%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h -[ 27%] Generating ../generated/databases.sh.h -[ 27%] Generating ../generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h -[ 27%] Built target microtar +[ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h +[ 28%] Generating ../generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h +[ 28%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h -[ 28%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -[ 28%] Built target tinyexpr -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -[ 28%] Built target cacode +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h.tmp [ 28%] Built target ksw2 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' +[ 28%] Built target generated make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' [ 28%] Built target alp -[ 28%] Built target generated make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src 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src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated 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CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp @@ -1349,73 +1391,67 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 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src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o @@ -1428,18 +1464,31 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +In file included from /usr/include/string.h:548, + from /usr/include/c++/13/cstring:42, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o @@ -1448,31 +1497,18 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp -In file included from /usr/include/string.h:548, - from /usr/include/c++/13/cstring:42, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o @@ -1483,24 +1519,24 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated 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CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o @@ -1521,9 +1557,9 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp @@ -1537,28 +1573,51 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp +In file included from /usr/include/c++/13/algorithm:60, + from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o @@ -1584,14 +1643,11 @@ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o @@ -1599,8 +1655,8 @@ [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp @@ -1622,10 +1678,10 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o @@ -1657,9 +1713,9 @@ [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o @@ -1686,26 +1742,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp -In file included from /usr/include/c++/13/algorithm:60, - from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ [ 99%] Linking CXX static library libmmseqs-framework.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/cmake -P CMakeFiles/mmseqs-framework.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-framework.dir/link.txt --verbose=1 @@ -1729,7 +1765,7 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' - cd build_avx && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/CMakeFiles /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx//CMakeFiles/progress.marks @@ -1740,213 +1776,153 @@ make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake "--color=" +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/ksw2 /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/data /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/data /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src/version /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/version /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/version/CMakeFiles/version.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/data /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/data /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build -make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build +make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +[ 0%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/cacode && /usr/bin/c++ 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/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -MF CMakeFiles/cacode.dir/lubksb.cpp.o.d -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/lubksb.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -[ 16%] Generating ../generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -[ 17%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -[ 18%] Generating ../generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h +[ 9%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp +[ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h -[ 19%] Linking CXX static library libversion.a -[ 19%] Generating ../generated/map.sh.h -[ 19%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -[ 19%] Generating ../generated/rbh.sh.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp +[ 11%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o /usr/bin/ranlib libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp +[ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 12%] Built target version +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp +[ 13%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib +[ 13%] Linking C static library libmicrotar.a +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 14%] Generating ../generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -1982,155 +1958,215 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 20%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +[ 14%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h +/usr/bin/ranlib libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h.tmp +[ 15%] Generating ../generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html +[ 15%] Built target microtar +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h +[ 16%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h +[ 16%] Generating ../generated/K4000.crf.h +[ 16%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h +[ 16%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +[ 17%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +[ 18%] Generating ../generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h +[ 18%] Generating ../generated/blastpgp.sh.h +[ 19%] Generating ../generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +[ 19%] Generating ../generated/map.sh.h +[ 20%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +[ 20%] Generating ../generated/rbh.sh.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh -[ 20%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +[ 21%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +[ 21%] Generating ../generated/clustering.sh.h +[ 21%] Built target tinyexpr cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h.tmp -[ 21%] Built target version -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp -[ 21%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h.tmp +[ 22%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h.tmp -[ 22%] Generating ../generated/update_clustering.sh.h -[ 23%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp +[ 23%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h +[ 23%] Built target cacode cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh -[ 23%] Generating ../generated/createtaxdb.sh.h -[ 23%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h [ 24%] Generating ../generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h -[ 24%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +[ 25%] Generating ../generated/createindex.sh.h +[ 25%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h -[ 25%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh +[ 25%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h -[ 26%] Generating ../generated/multihitdb.sh.h -[ 26%] Generating ../generated/enrich.sh.h -[ 26%] Generating ../generated/blastn.sh.h -[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h -[ 26%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 26%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h +[ 27%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h.tmp +[ 27%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h +[ 27%] Generating ../generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h +[ 27%] Generating ../generated/taxonomy.sh.h +[ 27%] Generating ../generated/blastn.sh.h +[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp +[ 27%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h -/usr/bin/ranlib libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h.tmp +[ 28%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h -[ 26%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -[ 27%] Generating ../generated/iterativepp.sh.h -[ 27%] Generating ../generated/linsearch.sh.h -[ 27%] Generating ../generated/tsv2exprofiledb.sh.h -[ 27%] Generating ../generated/databases.sh.h -[ 27%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h +[ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +[ 28%] Generating ../generated/tsv2exprofiledb.sh.h +[ 28%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp -[ 28%] Linking C static library libtinyexpr.a -[ 28%] Built target microtar -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -[ 28%] Built target tinyexpr -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -[ 28%] Built target cacode +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' [ 28%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h.tmp @@ -2145,91 +2181,91 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o [ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp @@ -2245,18 +2281,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp In file included from /usr/include/string.h:548, from /usr/include/c++/13/cstring:42, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, @@ -2270,6 +2294,18 @@ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o @@ -2278,12 +2314,12 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o @@ -2309,9 +2345,9 @@ [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o @@ -2324,9 +2360,9 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp @@ -2370,20 +2406,23 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o @@ -2392,23 +2431,40 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp +In file included from /usr/include/c++/13/algorithm:60, + from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o @@ -2437,9 +2493,9 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp @@ -2447,13 +2503,13 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp @@ -2501,26 +2557,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp -In file included from /usr/include/c++/13/algorithm:60, - from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ [ 99%] Linking CXX static library libmmseqs-framework.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/cmake -P CMakeFiles/mmseqs-framework.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-framework.dir/link.txt --verbose=1 @@ -2544,7 +2580,7 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' - cd build_sse4.1 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse4.1 && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/CMakeFiles /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1//CMakeFiles/progress.marks @@ -2555,17 +2591,17 @@ make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/ksw2 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o -MF CMakeFiles/cacode.dir/ludcmp.cpp.o.d -o CMakeFiles/cacode.dir/ludcmp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/ludcmp.cpp -[ 6%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -[ 7%] Generating ../generated/Library255_may17.lib.h -[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -[ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -[ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -[ 7%] Building CXX object 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../generated/libPolished_8.lib.h -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -[ 10%] Generating ../generated/cs219.lib.h +[ 1%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -MF CMakeFiles/cacode.dir/lubksb.cpp.o.d -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/lubksb.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ 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CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp -[ 13%] Generating ../generated/easytaxonomy.sh.h -[ 13%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection 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/build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h +[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 9%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp +[ 11%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 11%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 12%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 15%] Generating ../generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libversion.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 373 | ret->bound = s->bound; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:372:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 93 | ret->type = type; + | ~~~~~~~~~~^~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 367 | ret->value = s->value; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 446 | ret->value = NAN; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:444:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/usr/bin/ranlib libmicrotar.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +[ 13%] Generating ../generated/libPolished_8.lib.h +[ 13%] Built target version +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +[ 14%] Built target microtar +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h +[ 14%] Generating ../generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +[ 15%] Generating ../generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h +[ 15%] Generating ../generated/K4000.crf.h +[ 16%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +[ 17%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h +[ 17%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh +[ 17%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h +[ 18%] Generating ../generated/easytaxonomy.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +/usr/bin/ranlib libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h +[ 18%] Built target tinyexpr +[ 19%] Generating ../generated/easyrbh.sh.h +[ 19%] Built target cacode +[ 19%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh +[ 19%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +[ 20%] Generating ../generated/blastp.sh.h +[ 20%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h +[ 20%] Generating ../generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp -[ 17%] Linking CXX static library libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h +[ 21%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h -[ 17%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h -[ 19%] Generating ../generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp -[ 20%] Generating ../generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h +[ 21%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated [ 22%] Generating ../generated/cascaded_clustering.sh.h -[ 22%] Generating ../generated/searchtargetprofile.sh.h -[ 22%] Generating ../generated/createtaxdb.sh.h -[ 23%] Generating ../generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -[ 23%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h +[ 23%] Generating ../generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h +[ 24%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh -[ 24%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp +[ 25%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh -[ 24%] Generating ../generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 24%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 24%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h +[ 25%] Generating ../generated/createtaxdb.sh.h +[ 25%] Generating ../generated/translated_search.sh.h +[ 26%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +[ 26%] Generating ../generated/multihitsearch.sh.h +[ 27%] Generating ../generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -[ 25%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h -[ 26%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h -/usr/bin/ranlib libversion.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h -[ 26%] Generating ../generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h +[ 27%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h +[ 27%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h -[ 26%] Generating ../generated/taxonomy.sh.h -[ 26%] Built target version cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h -[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h -[ 26%] Generating ../generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 27%] Generating ../generated/databases.sh.h -[ 27%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h +[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +[ 27%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp +[ 28%] Generating ../generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +[ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h +[ 28%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h +[ 28%] Generating ../generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp -[ 27%] Generating ../generated/iterativepp.sh.h -[ 27%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp +[ 28%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h -[ 27%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -[ 27%] Built target microtar -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 373 | ret->bound = s->bound; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:372:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 93 | ret->type = type; - | ~~~~~~~~~~^~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 367 | ret->value = s->value; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 446 | ret->value = NAN; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:444:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -[ 28%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -[ 28%] Built target tinyexpr -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -[ 28%] Built target cacode -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -[ 28%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' @@ -2960,104 +2996,117 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 30%] Building CXX object 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp +In file included from /usr/include/string.h:548, + from /usr/include/c++/13/cstring:42, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o @@ -3068,19 +3117,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp -In file included from /usr/include/string.h:548, - from /usr/include/c++/13/cstring:42, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o @@ -3108,9 +3144,9 @@ [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o @@ -3122,8 +3158,8 @@ [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp @@ -3139,10 +3175,10 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o @@ -3152,8 +3188,8 @@ [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp @@ -3176,8 +3212,8 @@ [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp @@ -3187,21 +3223,41 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp +In file included from /usr/include/c++/13/algorithm:60, + from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o @@ -3230,10 +3286,10 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o @@ -3316,26 +3372,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp [ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp -In file included from /usr/include/c++/13/algorithm:60, - from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ [ 99%] Linking CXX static library libmmseqs-framework.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/mmseqs-framework.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-framework.dir/link.txt --verbose=1 @@ -3359,410 +3395,410 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' - cd build_ssse3 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_ssse3 && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/CMakeFiles /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake "--color=" -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/ksw2 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/ksw2/CMakeFiles/ksw2.dir/DependInfo.cmake "--color=" +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/data /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/data /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" +make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/data /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/data /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src/version /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version/CMakeFiles/version.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src/version /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version/CMakeFiles/version.dir/DependInfo.cmake "--color=" +make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build +make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +[ 1%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -MF CMakeFiles/cacode.dir/lubksb.cpp.o.d -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/lubksb.cpp make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build -make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build +[ 2%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cc -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -MD -MT lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -MF CMakeFiles/microtar.dir/microtar.c.o.d -o CMakeFiles/microtar.dir/microtar.c.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar/microtar.c +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +[ 2%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/ludcmp.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 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CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_random.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/c++ -DGIT_SHA1=15-6f452+ds-2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/cacode && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -MF CMakeFiles/cacode.dir/lubksb.cpp.o.d -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/lubksb.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 14%] Generating ../generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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/build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -[ 15%] Generating ../generated/easycluster.sh.h -[ 16%] Generating ../generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh -[ 18%] Generating ../generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 18%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h +[ 8%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h +[ 9%] Generating ../generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp +[ 11%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +[ 11%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h +[ 11%] Built target version +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp +[ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h +[ 13%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h +[ 13%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +[ 13%] Generating ../generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h +[ 14%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 15%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +[ 16%] Generating ../generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h.tmp +/usr/bin/ranlib libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp +[ 16%] Built target microtar +[ 16%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h +[ 16%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh +[ 16%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h -[ 19%] Linking CXX static library libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 373 | ret->bound = s->bound; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:372:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 93 | ret->type = type; + | ~~~~~~~~~~^~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 367 | ret->value = s->value; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 446 | ret->value = NAN; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:444:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp +[ 17%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h +[ 18%] Generating ../generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +[ 19%] Generating ../generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 19%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h -[ 19%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h.tmp [ 19%] Generating ../generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh [ 19%] Generating ../generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h [ 20%] Generating ../generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp -[ 21%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh -[ 21%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 22%] Generating ../generated/cascaded_clustering.sh.h -[ 22%] Generating ../generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -[ 23%] Generating ../generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h -[ 23%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -[ 23%] Generating ../generated/blastn.sh.h -[ 23%] Generating ../generated/multihitsearch.sh.h -[ 24%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh -[ 24%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp +[ 20%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +[ 21%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -/usr/bin/ranlib libversion.a -[ 25%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h +[ 22%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp +[ 23%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh -[ 26%] Generating ../generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp +[ 24%] Generating ../generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h +[ 24%] Generating ../generated/translated_search.sh.h +[ 24%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h +[ 24%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h +[ 24%] Built target cacode +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp +[ 25%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h.tmp +[ 27%] Linking C static library libtinyexpr.a +[ 27%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h +[ 27%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +[ 27%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh +/usr/bin/ranlib libtinyexpr.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h.tmp -[ 26%] Built target version -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp +[ 27%] Built target tinyexpr +[ 27%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh [ 27%] Generating ../generated/searchslicedtargetprofile.sh.h -[ 27%] Generating ../generated/taxonomy.sh.h -[ 27%] Generating ../generated/databases.sh.h -[ 27%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h +[ 27%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +[ 27%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp +[ 28%] Generating ../generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 27%] Generating ../generated/iterativepp.sh.h -[ 27%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 27%] Generating ../generated/tsv2exprofiledb.sh.h +[ 28%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h.tmp +[ 28%] Generating ../generated/iterativepp.sh.h +[ 28%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h cd 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-/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 373 | ret->bound = s->bound; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:372:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 93 | ret->type = type; - | ~~~~~~~~~~^~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 367 | ret->value = s->value; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 446 | ret->value = NAN; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:444:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -[ 27%] Built target microtar -[ 28%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' @@ -3775,102 +3811,115 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated 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src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp +In file included from /usr/include/string.h:548, + from /usr/include/c++/13/cstring:42, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o @@ -3886,19 +3935,6 @@ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -In file included from /usr/include/string.h:548, - from /usr/include/c++/13/cstring:42, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp @@ -3913,17 +3949,17 @@ [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp +[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o @@ -3931,8 +3967,8 @@ [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp @@ -3953,9 +3989,9 @@ [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o @@ -4000,6 +4036,9 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o @@ -4023,18 +4062,35 @@ [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp +In file included from /usr/include/c++/13/algorithm:60, + from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o @@ -4086,9 +4142,9 @@ [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o @@ -4108,9 +4164,9 @@ [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o @@ -4131,26 +4187,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp [ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp -In file included from /usr/include/c++/13/algorithm:60, - from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ [ 99%] Linking CXX static library libmmseqs-framework.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/mmseqs-framework.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-framework.dir/link.txt --verbose=1 @@ -4174,7 +4210,7 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' - cd build_sse3 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse3 && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/CMakeFiles /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3//CMakeFiles/progress.marks @@ -4182,391 +4218,395 @@ make[3]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' make -f 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o -MF CMakeFiles/cacode.dir/lambda_calculator.cpp.o.d -o CMakeFiles/cacode.dir/lambda_calculator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/lambda_calculator.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -[ 13%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh -[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blosum62.out +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -[ 15%] Generating ../generated/easysearch.sh.h -[ 16%] Generating ../generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp -[ 17%] Generating ../generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h +[ 8%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp +[ 9%] Generating ../generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +/usr/bin/ranlib libversion.a +[ 10%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 18%] Generating ../generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h +[ 11%] Built target version +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp +[ 11%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h +[ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h +[ 12%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +[ 13%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp +[ 13%] Generating ../generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h +[ 14%] Generating ../generated/krona_prelude.html.h +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h +[ 15%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 16%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp +/usr/bin/ranlib libmicrotar.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h +[ 16%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf +[ 16%] Built target microtar +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +[ 16%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h +[ 16%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h +[ 17%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h +[ 18%] Generating ../generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h +[ 19%] Generating ../generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h -[ 19%] Linking CXX static library libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 373 | ret->bound = s->bound; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:372:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 93 | ret->type = type; + | ~~~~~~~~~~^~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 367 | ret->value = s->value; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] + 446 | ret->value = NAN; + | ^~ +In function ‘new_expr’, + inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:444:19: +/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ + 88 | te_expr *ret = malloc(size); + | ^~~~~~~~~~~~ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp +[ 19%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h [ 19%] Generating ../generated/map.sh.h -[ 19%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h +[ 19%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh -[ 19%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h -[ 20%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h +[ 19%] Generating ../generated/clustering.sh.h +[ 20%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h +[ 21%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -[ 22%] Generating ../generated/createindex.sh.h -[ 22%] Generating ../generated/searchtargetprofile.sh.h -[ 23%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h +[ 22%] Generating ../generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +[ 23%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h -[ 23%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h -[ 24%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h -[ 24%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h +[ 24%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h -[ 24%] Generating ../generated/translated_search.sh.h +[ 24%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh +[ 24%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -[ 25%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h.tmp -/usr/bin/ranlib libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h +[ 25%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h [ 26%] Generating ../generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 26%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +[ 26%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h -[ 26%] Generating ../generated/enrich.sh.h -[ 26%] Built target version +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h -[ 26%] Generating ../generated/linsearch.sh.h -[ 26%] Generating ../generated/blastn.sh.h -[ 26%] Generating ../generated/taxonomy.sh.h -[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h +[ 26%] Generating ../generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -[ 27%] Generating ../generated/databases.sh.h -[ 27%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +[ 26%] Generating ../generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -[ 27%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh -[ 27%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h +[ 26%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h +[ 27%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +[ 27%] Generating ../generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh +[ 27%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +[ 27%] Generating ../generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp +[ 27%] Built target cacode cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h -[ 27%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 373 | ret->bound = s->bound; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:372:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 93 | ret->type = type; - | ~~~~~~~~~~^~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/usr/bin/ranlib libmicrotar.a -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 367 | ret->value = s->value; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:366:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] - 446 | ret->value = NAN; - | ^~ -In function ‘new_expr’, - inlined from ‘base’ at /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:444:19: -/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ - 88 | te_expr *ret = malloc(size); - | ^~~~~~~~~~~~ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -[ 27%] Built target microtar +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h +[ 27%] Built target ksw2 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h [ 28%] Linking C static library libtinyexpr.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 @@ -4574,10 +4614,6 @@ /usr/bin/ranlib libtinyexpr.a make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' [ 28%] Built target tinyexpr -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -[ 28%] Built target cacode -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -[ 28%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' @@ -4590,85 +4626,85 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp +[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp +[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp +[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp @@ -4676,24 +4712,16 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp In file included from /usr/include/string.h:548, from /usr/include/c++/13/cstring:42, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, @@ -4707,6 +4735,14 @@ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o @@ -4726,9 +4762,9 @@ [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o @@ -4753,28 +4789,28 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o @@ -4815,21 +4851,41 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp +In file included from /usr/include/c++/13/algorithm:60, + from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ +In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, + inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, + inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, + inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, + inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: +/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 931 | *__first = __tmp; + | ~~~~~~~~~^~~~~~~ [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o @@ -4865,8 +4921,8 @@ [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd 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src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated 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CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp @@ -4879,8 +4935,8 @@ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp @@ -4946,26 +5002,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp [ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp -In file included from /usr/include/c++/13/algorithm:60, - from /build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd/simd.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 2]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeProfileCs(int, float*, float*, float, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:350:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ -In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’, - inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21, - inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = float*; _Tp = double]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20, - inlined from ‘float* CSProfile::computeProfile(unsigned char*, int, float*, float*, float, float, float) [with int type = 0]’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:383:14, - inlined from ‘float* CSProfile::computeSequenceCs(unsigned char*, int, float)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:354:58: -/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 931 | *__first = __tmp; - | ~~~~~~~~~^~~~~~~ [ 99%] Linking CXX static library libmmseqs-framework.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/cmake -P CMakeFiles/mmseqs-framework.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmseqs-framework.dir/link.txt --verbose=1 @@ -4996,7 +5032,7 @@ make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_install -pmmseqs2 debian/bin/simd-dispatch /usr/lib/mmseqs2/ dh_auto_install --builddirectory build_avx2 && dh_auto_install --builddirectory build_avx && dh_auto_install --builddirectory build_sse4.1 && dh_auto_install --builddirectory build_ssse3 && dh_auto_install --builddirectory build_sse3 && true - cd build_avx2 && make -j42 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_avx2 && make -j20 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5008,7 +5044,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-15-6f452+ds/debian/tmp/usr/bin/mmseqs-avx2 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' - cd build_avx && make -j42 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_avx && make -j20 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5020,7 +5056,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-15-6f452+ds/debian/tmp/usr/bin/mmseqs-avx make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' - cd build_sse4.1 && make -j42 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse4.1 && make -j20 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5032,7 +5068,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-15-6f452+ds/debian/tmp/usr/bin/mmseqs-sse4.1 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' - cd build_ssse3 && make -j42 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_ssse3 && make -j20 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5044,7 +5080,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-15-6f452+ds/debian/tmp/usr/bin/mmseqs-ssse3 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' - cd build_sse3 && make -j42 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse3 && make -j20 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5102,9 +5138,9 @@ make[1]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_md5sums dh_builddeb +dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_15-6f452+ds-2_amd64.deb'. dpkg-deb: building package 'mmseqs2' in '../mmseqs2_15-6f452+ds-2_amd64.deb'. dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_15-6f452+ds-2_all.deb'. -dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_15-6f452+ds-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mmseqs2_15-6f452+ds-2_amd64.buildinfo dpkg-genchanges --build=binary -O../mmseqs2_15-6f452+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -5112,12 +5148,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/530769/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/530769/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3919119 and its subdirectories -I: Current time: Sun Jun 22 12:51:04 -12 2025 -I: pbuilder-time-stamp: 1750639864 +I: removing directory /srv/workspace/pbuilder/530769 and its subdirectories +I: Current time: Tue May 21 09:00:01 +14 2024 +I: pbuilder-time-stamp: 1716231601