Diff of the two buildlogs: -- --- b1/build.log 2024-05-20 19:19:17.405578258 +0000 +++ b2/build.log 2024-05-20 19:22:28.761437961 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 20 07:14:40 -12 2024 -I: pbuilder-time-stamp: 1716232480 +I: Current time: Mon Jun 23 15:42:18 +14 2025 +I: pbuilder-time-stamp: 1750642938 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying fix-gcc13-ftbfs.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/969827/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/415666/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 23 01:42 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/415666/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/415666/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='74260016357f418bafaf9326a3eb15e2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='969827' - PS1='# ' - PS2='> ' + INVOCATION_ID=3a7a8eccb0284de08ea2256139771264 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=415666 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ed0Bndfy/pbuilderrc_Nnkg --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ed0Bndfy/b1 --logfile b1/build.log megahit_1.2.9-5.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ed0Bndfy/pbuilderrc_GE6l --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ed0Bndfy/b2 --logfile b2/build.log megahit_1.2.9-5.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 19 07:43 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/969827/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 21 14:05 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/415666/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -201,7 +233,7 @@ Get: 80 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.3-1 [659 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.11.8-1 [1056 B] Get: 82 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] -Fetched 49.0 MB in 1s (57.0 MB/s) +Fetched 49.0 MB in 1s (63.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19718 files and directories currently installed.) @@ -485,8 +517,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon May 20 19:15:30 UTC 2024. -Universal Time is now: Mon May 20 19:15:30 UTC 2024. +Local time is now: Mon Jun 23 01:43:06 UTC 2025. +Universal Time is now: Mon Jun 23 01:43:06 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -557,7 +589,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/megahit-1.2.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../megahit_1.2.9-5_source.changes +I: user script /srv/workspace/pbuilder/415666/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/415666/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/megahit-1.2.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../megahit_1.2.9-5_source.changes dpkg-buildpackage: info: source package megahit dpkg-buildpackage: info: source version 1.2.9-5 dpkg-buildpackage: info: source distribution unstable @@ -598,7 +634,7 @@ -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Build type: None: -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' --- Configuring done (3.0s) +-- Configuring done (4.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -614,7 +650,7 @@ -- Build files have been written to: /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu dh_auto_build - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/megahit-1.2.9 -B/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -625,120 +661,121 @@ make -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/depend make -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/depend make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' +cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_core.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_toolkit.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_core_popcnt.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' -cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_core.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_core_no_hw_accel.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' make -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/build +make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' +make -f CMakeFiles/megahit_core_popcnt.dir/build.make CMakeFiles/megahit_core_popcnt.dir/build make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' /usr/bin/cmake -E create_symlink megahit_core_no_hw_accel megahit_toolkit +make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' -make -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/build -make -f CMakeFiles/megahit_core_popcnt.dir/build.make CMakeFiles/megahit_core_popcnt.dir/build -make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' make -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/build make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' +[ 6%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o +[ 4%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o +[ 7%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o +[ 12%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o +[ 12%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/contig_output.cpp +[ 15%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o +[ 15%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main.cpp make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' -[ 0%] Building CXX object CMakeFiles/megahit_core.dir/src/main.cpp.o -[ 1%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -[ 2%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main.cpp -[ 4%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c 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-fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/read_stat.cpp +[ 39%] Building CXX object CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_sdbg_build.cpp +In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22, + from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20, + from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/deque:67, - from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14: + from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ @@ -790,15 +827,14 @@ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22, - from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20, - from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9: +In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, + from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/bits/refwrap.h:39, - from /usr/include/c++/13/deque:67, - from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13: +In file included from /usr/include/c++/13/string:49, + from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25, + from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ @@ -969,27 +1005,49 @@ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -[ 40%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT 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/build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15, - from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9: +[ 49%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_iterate.cpp +[ 50%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o +[ 51%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_sdbg_build.cpp +[ 51%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/weak_link_remover.cpp +[ 51%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_local_assemble.cpp +[ 52%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp +[ 53%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp +[ 54%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/utils/options_description.cpp +In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22, + from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20, + from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, - from /usr/include/c++/13/vector:68, - from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13: + from /usr/include/c++/13/deque:67, + from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ @@ -1041,23 +1099,14 @@ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -[ 45%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp -[ 46%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/sequence.cpp -[ 47%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp -[ 48%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp -In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22, - from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20, - from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9: +In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, + from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/deque:67, - from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13: + from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ @@ -1109,30 +1158,15 @@ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -[ 48%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/weak_link_remover.cpp -[ 49%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp -[ 50%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp -[ 51%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp -[ 52%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp -[ 53%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp -[ 54%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp -[ 55%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, - from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10: + from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15, + from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/string:49, - from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25, - from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1: +In file included from /usr/include/c++/13/bits/refwrap.h:39, + from /usr/include/c++/13/vector:68, + from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ @@ -1184,30 +1218,40 @@ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -[ 56%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp -[ 57%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp -[ 58%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp -[ 59%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp -[ 59%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp -[ 60%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmer_counter.cpp -[ 61%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmsort_selector.cpp -[ 62%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp +[ 56%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o +[ 56%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops 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/build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp +[ 58%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o +[ 58%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp +[ 59%] Building CXX object CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp +[ 60%] Building CXX object CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp +[ 61%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp +[ 62%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/bubble_remover.cpp +[ 63%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp +[ 64%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/contig_output.cpp +[ 65%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/sdbg_pruning.cpp +[ 66%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/low_depth_remover.cpp +[ 67%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, - from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9: + from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/bits/refwrap.h:39, - from /usr/include/c++/13/deque:67, - from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14: +In file included from /usr/include/c++/13/string:49, + from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25, + from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ @@ -1259,20 +1303,43 @@ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/tip_remover.cpp +[ 70%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o +[ 70%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o +[ 71%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -MF 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Building CXX object CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat 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CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp +[ 75%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o +[ 76%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmsort_selector.cpp +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp +[ 77%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/sequence.cpp +[ 78%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp +[ 79%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o +[ 79%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function 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CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, - from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10: + from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15, + from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/string:49, - from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25, - from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1: +In file included from /usr/include/c++/13/bits/refwrap.h:39, + from /usr/include/c++/13/vector:68, + from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ @@ -1324,17 +1391,14 @@ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -[ 66%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp -In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22, - from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20, - from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9: +In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, + from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/deque:67, - from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13: + from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ @@ -1386,17 +1450,19 @@ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -[ 67%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp -In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22, - from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15, - from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9: +[ 80%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o +[ 81%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/contigs_to_fastg.cpp +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp +In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22, + from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20, + from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9: /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, - from /usr/include/c++/13/vector:68, - from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13: + from /usr/include/c++/13/deque:67, + from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ @@ -1448,56 +1514,34 @@ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ -[ 68%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o +[ 82%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT 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CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -o megahit_core_no_hw_accel -lz +make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' +[100%] Built target megahit_core_no_hw_accel make -f CMakeFiles/megahit.dir/build.make CMakeFiles/megahit.dir/depend make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit.dir/DependInfo.cmake "--color=" @@ -1602,7 +1638,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/megahit/ - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/megahit-1.2.9/debian/megahit AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/megahit-1.2.9/debian/megahit AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/megahit-1.2.9 -B/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1618,15 +1654,15 @@ -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/bin/megahit -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/bin/megahit_toolkit -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data --- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/loop.fa --- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r4.fa -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r2.il.fa.bz2 --- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/generate_random_fasta.py --- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r3_1.fa --- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r3_2.fa --- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/ref.fa -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/empty.fa +-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r4.fa -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r1.il.fa.gz +-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/generate_random_fasta.py +-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/ref.fa +-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r3_2.fa +-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/loop.fa +-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r3_1.fa make[1]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/megahit-1.2.9' @@ -1660,12 +1696,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/415666/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/415666/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/969827 and its subdirectories -I: Current time: Mon May 20 07:19:16 -12 2024 -I: pbuilder-time-stamp: 1716232756 +I: removing directory /srv/workspace/pbuilder/415666 and its subdirectories +I: Current time: Mon Jun 23 15:45:25 +14 2025 +I: pbuilder-time-stamp: 1750643125