Diff of the two buildlogs: -- --- b1/build.log 2024-05-30 22:13:32.103103439 +0000 +++ b2/build.log 2024-05-30 23:09:21.888361673 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jul 2 16:06:37 -12 2025 -I: pbuilder-time-stamp: 1751515597 +I: Current time: Fri May 31 12:13:39 +14 2024 +I: pbuilder-time-stamp: 1717107219 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2749064/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3642565/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 30 22:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3642565/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3642565/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='fa7c101f65dc479c80ecf46543db12d2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2749064' - PS1='# ' - PS2='> ' + INVOCATION_ID=bd3a29fe7117435dbeb374874a965aa5 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3642565 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FcRqynMP/pbuilderrc_wyiE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FcRqynMP/b1 --logfile b1/build.log macs_3.0.1-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FcRqynMP/pbuilderrc_r73H --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FcRqynMP/b2 --logfile b2/build.log macs_3.0.1-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 30 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2749064/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 27 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3642565/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -241,7 +273,7 @@ Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-pip all 24.0+dfsg-2 [1517 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.2.1-2 [247 kB] -Fetched 94.7 MB in 10s (9852 kB/s) +Fetched 94.7 MB in 2s (50.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19716 files and directories currently installed.) @@ -571,8 +603,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Jul 3 04:08:09 UTC 2025. -Universal Time is now: Thu Jul 3 04:08:09 UTC 2025. +Local time is now: Thu May 30 22:15:31 UTC 2024. +Universal Time is now: Thu May 30 22:15:31 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -678,7 +710,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/macs-3.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../macs_3.0.1-2_source.changes +I: user script /srv/workspace/pbuilder/3642565/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3642565/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/macs-3.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../macs_3.0.1-2_source.changes dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 3.0.1-2 dpkg-buildpackage: info: source distribution unstable @@ -771,27 +807,27 @@ creating build/lib.linux-x86_64-cpython-312/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-x86_64-cpython-312/MACS3/Signal creating build/lib.linux-x86_64-cpython-312/MACS3/Commands -copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands -copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands -copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands -copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands -copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands -copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands -copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands -copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands +copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands +copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands +copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands -copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands +copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands +copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands -copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands +copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands +copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands +copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands +copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands +copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-x86_64-cpython-312/MACS3/Commands creating build/lib.linux-x86_64-cpython-312/MACS3/Utilities -copying MACS3/Utilities/Constants.py -> build/lib.linux-x86_64-cpython-312/MACS3/Utilities -copying MACS3/Utilities/Logger.py -> build/lib.linux-x86_64-cpython-312/MACS3/Utilities -copying MACS3/Utilities/OptValidator.py -> build/lib.linux-x86_64-cpython-312/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-x86_64-cpython-312/MACS3/Utilities +copying MACS3/Utilities/OptValidator.py -> build/lib.linux-x86_64-cpython-312/MACS3/Utilities +copying MACS3/Utilities/Logger.py -> build/lib.linux-x86_64-cpython-312/MACS3/Utilities +copying MACS3/Utilities/Constants.py -> build/lib.linux-x86_64-cpython-312/MACS3/Utilities running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.linux-x86_64-cpython-312 @@ -898,59 +934,59 @@ creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/MACS3 -creating build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +creating build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-312/MACS3/IO/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-312/MACS3/IO/PeakIO.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-312/MACS3/IO/BAM.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-312/MACS3/IO/OutputWriter.py -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-312/MACS3/IO/BedGraphIO.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-312/MACS3/IO/Parser.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-312/MACS3/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/Utilities -copying build/lib.linux-x86_64-cpython-312/MACS3/Utilities/Constants.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities -copying build/lib.linux-x86_64-cpython-312/MACS3/Utilities/Logger.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities -copying build/lib.linux-x86_64-cpython-312/MACS3/Utilities/OptValidator.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities copying build/lib.linux-x86_64-cpython-312/MACS3/Utilities/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities -copying build/lib.linux-x86_64-cpython-312/MACS3/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3 +copying build/lib.linux-x86_64-cpython-312/MACS3/Utilities/OptValidator.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities +copying build/lib.linux-x86_64-cpython-312/MACS3/Utilities/Logger.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities +copying build/lib.linux-x86_64-cpython-312/MACS3/Utilities/Constants.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities creating build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/PeakModel.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/SignalProcessing.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/VariantStat.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/Prob.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/BedGraph.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/RACollection.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/PeakVariants.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/Region.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/Pileup.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/PileupV2.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/BedGraph.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/PeakDetect.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/Region.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/VariantStat.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/PileupV2.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -creating build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-312/MACS3/IO/BedGraphIO.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-312/MACS3/IO/PeakIO.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-312/MACS3/IO/BAM.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-312/MACS3/IO/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-312/MACS3/IO/Parser.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-312/MACS3/IO/OutputWriter.py -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/PeakVariants.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/RACollection.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/Prob.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +creating build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-312/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands running install_egg_info running egg_info creating MACS3.egg-info @@ -1067,7 +1103,7 @@ copying build/scripts-3.12/macs3 -> build/bdist.linux-x86_64/wheel/MACS3-3.0.1.data/scripts changing mode of build/bdist.linux-x86_64/wheel/MACS3-3.0.1.data/scripts/macs3 to 755 creating build/bdist.linux-x86_64/wheel/MACS3-3.0.1.dist-info/WHEEL -creating '/build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.12_MACS3/.tmp-a1juntjj/MACS3-3.0.1-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.12_MACS3/.tmp-eima598t/MACS3-3.0.1-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' @@ -1141,27 +1177,27 @@ creating build/lib.linux-x86_64-cpython-311/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-x86_64-cpython-311/MACS3/Signal creating build/lib.linux-x86_64-cpython-311/MACS3/Commands -copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands -copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands -copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands -copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands -copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands -copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands -copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands -copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands +copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands +copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands +copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands -copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands +copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands +copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands -copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands +copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands +copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands +copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands +copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands +copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-x86_64-cpython-311/MACS3/Commands creating build/lib.linux-x86_64-cpython-311/MACS3/Utilities -copying MACS3/Utilities/Constants.py -> build/lib.linux-x86_64-cpython-311/MACS3/Utilities -copying MACS3/Utilities/Logger.py -> build/lib.linux-x86_64-cpython-311/MACS3/Utilities -copying MACS3/Utilities/OptValidator.py -> build/lib.linux-x86_64-cpython-311/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-x86_64-cpython-311/MACS3/Utilities +copying MACS3/Utilities/OptValidator.py -> build/lib.linux-x86_64-cpython-311/MACS3/Utilities +copying MACS3/Utilities/Logger.py -> build/lib.linux-x86_64-cpython-311/MACS3/Utilities +copying MACS3/Utilities/Constants.py -> build/lib.linux-x86_64-cpython-311/MACS3/Utilities running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.linux-x86_64-cpython-311 @@ -1267,59 +1303,59 @@ running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/MACS3 -creating build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands -copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +creating build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-311/MACS3/IO/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-311/MACS3/IO/BedGraphIO.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-311/MACS3/IO/BAM.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-311/MACS3/IO/OutputWriter.py -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-311/MACS3/IO/Parser.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-311/MACS3/IO/PeakIO.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-311/MACS3/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3 creating build/bdist.linux-x86_64/wheel/MACS3/Utilities -copying build/lib.linux-x86_64-cpython-311/MACS3/Utilities/Constants.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities -copying build/lib.linux-x86_64-cpython-311/MACS3/Utilities/Logger.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities -copying build/lib.linux-x86_64-cpython-311/MACS3/Utilities/OptValidator.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities copying build/lib.linux-x86_64-cpython-311/MACS3/Utilities/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities -copying build/lib.linux-x86_64-cpython-311/MACS3/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3 +copying build/lib.linux-x86_64-cpython-311/MACS3/Utilities/OptValidator.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities +copying build/lib.linux-x86_64-cpython-311/MACS3/Utilities/Logger.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities +copying build/lib.linux-x86_64-cpython-311/MACS3/Utilities/Constants.py -> build/bdist.linux-x86_64/wheel/MACS3/Utilities creating build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/ScoreTrack.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/UnitigRACollection.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/FixWidthTrack.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/Region.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/BedGraph.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/PosReadsInfo.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/HMMR_HMM.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/RACollection.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/VariantStat.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/PileupV2.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/HMMR_EM.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/PosReadsInfo.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/PairedEndTrack.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/PeakVariants.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/FixWidthTrack.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/CallPeakUnit.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/VariantStat.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/ReadAlignment.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/Pileup.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/ScoreTrack.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/HMMR_Signal_Processing.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/UnitigRACollection.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/PeakDetect.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/SignalProcessing.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/Region.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/Prob.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/RACollection.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/HMMR_EM.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/PeakModel.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/BedGraph.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal -creating build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-311/MACS3/IO/Parser.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-311/MACS3/IO/BAM.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-311/MACS3/IO/PeakIO.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-311/MACS3/IO/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-311/MACS3/IO/BedGraphIO.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/IO -copying build/lib.linux-x86_64-cpython-311/MACS3/IO/OutputWriter.py -> build/bdist.linux-x86_64/wheel/MACS3/IO +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/ReadAlignment.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/CallPeakUnit.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/Pileup.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/PairedEndTrack.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +copying build/lib.linux-x86_64-cpython-311/MACS3/Signal/Prob.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/MACS3/Signal +creating build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/__init__.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands +copying build/lib.linux-x86_64-cpython-311/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-x86_64/wheel/MACS3/Commands running install_egg_info running egg_info writing MACS3.egg-info/PKG-INFO @@ -1434,7 +1470,7 @@ copying build/scripts-3.11/macs3 -> build/bdist.linux-x86_64/wheel/MACS3-3.0.1.data/scripts changing mode of build/bdist.linux-x86_64/wheel/MACS3-3.0.1.data/scripts/macs3 to 755 creating build/bdist.linux-x86_64/wheel/MACS3-3.0.1.dist-info/WHEEL -creating '/build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.11_MACS3/.tmp-hk_6u0fg/MACS3-3.0.1-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.11_MACS3/.tmp-enq8fqkq/MACS3-3.0.1-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' @@ -1530,7 +1566,7 @@ test/test_SignalProcessing.py s. [ 98%] test/test_online.py . [100%] -======================== 63 passed, 1 skipped in 13.18s ======================== +======================== 63 passed, 1 skipped in 42.41s ======================== I: pybuild base:311: cd /build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.11_MACS3/build; python3.11 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.2.1, pluggy-1.5.0 @@ -1552,7 +1588,7 @@ test/test_SignalProcessing.py s. [ 98%] test/test_online.py . [100%] -======================== 63 passed, 1 skipped in 16.38s ======================== +======================== 63 passed, 1 skipped in 40.75s ======================== cd test && for PY3VER in 3.12 3.11; do \ export PATH=/build/reproducible-path/macs-3.0.1/.pybuild/cpython3_${PY3VER}_MACS3/scripts:$PATH \ && export PYTHONPATH=/build/reproducible-path/macs-3.0.1/.pybuild/cpython3_${PY3VER}_MACS3/build \ @@ -1953,8 +1989,8 @@ checking the files: ../temp/macs3.0.1-2-3.12_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak ... success! Results are the same! 18. brief speed test -CPU time (mm:ss): 00:01:05 -Max mem (KB): 238476 +CPU time (mm:ss): 00:02:17 +Max mem (KB): 298552 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad @@ -2351,8 +2387,8 @@ checking the files: ../temp/macs3.0.1-2-3.11_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak ... success! Results are the same! 18. brief speed test -CPU time (mm:ss): 00:01:07 -Max mem (KB): 268084 +CPU time (mm:ss): 00:02:06 +Max mem (KB): 300304 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -2395,12 +2431,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3642565/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3642565/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2749064 and its subdirectories -I: Current time: Wed Jul 2 16:36:31 -12 2025 -I: pbuilder-time-stamp: 1751517391 +I: removing directory /srv/workspace/pbuilder/3642565 and its subdirectories +I: Current time: Fri May 31 13:09:18 +14 2024 +I: pbuilder-time-stamp: 1717110558