Diff of the two buildlogs: -- --- b1/build.log 2024-06-06 09:58:11.464582493 +0000 +++ b2/build.log 2024-06-06 09:59:35.449021736 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jul 9 04:20:37 -12 2025 -I: pbuilder-time-stamp: 1752078037 +I: Current time: Thu Jun 6 23:58:14 +14 2024 +I: pbuilder-time-stamp: 1717667894 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -35,52 +35,84 @@ dpkg-source: info: applying fix-numerous-format-warnings I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3622675/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1449978/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 6 09:58 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1449978/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1449978/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='0cfee399157e4df1b74c01d20c819642' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3622675' - PS1='# ' - PS2='> ' + INVOCATION_ID=747acfbe58b04ac48470f97501f24c3a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1449978 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cXDx3ZVO/pbuilderrc_xik5 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cXDx3ZVO/b1 --logfile b1/build.log lutefisk_1.0.7+dfsg-7.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cXDx3ZVO/pbuilderrc_qMAu --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cXDx3ZVO/b2 --logfile b2/build.log lutefisk_1.0.7+dfsg-7.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jul 8 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3622675/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 5 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1449978/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -145,7 +177,7 @@ Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] -Fetched 19.0 MB in 0s (131 MB/s) +Fetched 19.0 MB in 0s (41.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19705 files and directories currently installed.) @@ -281,7 +313,11 @@ fakeroot is already the newest version (1.35-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lutefisk-1.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lutefisk_1.0.7+dfsg-7_source.changes +I: user script /srv/workspace/pbuilder/1449978/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1449978/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lutefisk-1.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lutefisk_1.0.7+dfsg-7_source.changes dpkg-buildpackage: info: source package lutefisk dpkg-buildpackage: info: source version 1.0.7+dfsg-7 dpkg-buildpackage: info: source distribution unstable @@ -320,7 +356,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/lutefisk-1.0.7+dfsg' dh_auto_build --builddirectory=/build/reproducible-path/lutefisk-1.0.7+dfsg/debian/build -- all - cd debian/build && make -j42 "INSTALL=install --strip-program=true" all + cd debian/build && make -j20 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/reproducible-path/lutefisk-1.0.7+dfsg/debian/build' gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -D__LINUX -c LutefiskGlobalDeclarations.c gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -D__LINUX -c LutefiskMain.c @@ -334,6 +370,10 @@ gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -D__LINUX -c LutefiskFourier.c gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -D__LINUX -c LutefiskGetAutoTag.c gcc -O -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lutefisk-1.0.7+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -D__LINUX -c ListRoutines.c +LutefiskMain.c: In function 'ChangeOutputName': +LutefiskMain.c:865:71: warning: embedded '\0' in format [-Wformat-contains-nul] + 865 | sprintf(gParam.outputFile + strlen(gParam.outputFile), "%d\0", fileCount++); + | ^~ LutefiskGetAutoTag.c: In function 'ComposePeptideString': LutefiskGetAutoTag.c:2021:25: warning: embedded '\0' in format [-Wformat-contains-nul] 2021 | p+= sprintf(p, "\0"); /* NULL terminate the string */ @@ -346,10 +386,6 @@ LutefiskScore.c:417:25: warning: embedded '\0' in format [-Wformat-contains-nul] 417 | p+= sprintf(p, "\0"); /* NULL terminate the string */ | ^~ -LutefiskMain.c: In function 'ChangeOutputName': -LutefiskMain.c:865:71: warning: embedded '\0' in format [-Wformat-contains-nul] - 865 | sprintf(gParam.outputFile + strlen(gParam.outputFile), "%d\0", fileCount++); - | ^~ LutefiskFourier.c: In function 'CrossCorrelate': LutefiskFourier.c:363:17: warning: 'twofft' accessing 4 bytes in a region of size 0 [-Wstringop-overflow=] 363 | twofft(array1, array2, workSpace, result, n); @@ -407,16 +443,16 @@ cp --reflink=auto -a ./Qtof_ELVISLIVESK.dta debian/lutefisk/usr/share/doc/lutefisk/examples cp --reflink=auto -a ./Qtof_ELVISLIVESK.lut debian/lutefisk/usr/share/doc/lutefisk/examples dh_installman - install -m0755 -d debian/lutefisk-doc/usr/share/man/man7/ - install -p -m0644 ./debian/lutefisk-doc.7 debian/lutefisk-doc/usr/share/man/man7/lutefisk-doc.7 install -m0755 -d debian/lutefisk/usr/share/man/man1/ install -p -m0644 ./debian/lutefisk.1 debian/lutefisk/usr/share/man/man1/lutefisk.1 + install -m0755 -d debian/lutefisk-doc/usr/share/man/man7/ + install -p -m0644 ./debian/lutefisk-doc.7 debian/lutefisk-doc/usr/share/man/man7/lutefisk-doc.7 man-recode --to-code UTF-8 --suffix .dh-new debian/lutefisk/usr/share/man/man1/lutefisk.1 man-recode --to-code UTF-8 --suffix .dh-new debian/lutefisk-doc/usr/share/man/man7/lutefisk-doc.7 - mv debian/lutefisk/usr/share/man/man1/lutefisk.1.dh-new debian/lutefisk/usr/share/man/man1/lutefisk.1 - chmod 0644 -- debian/lutefisk/usr/share/man/man1/lutefisk.1 mv debian/lutefisk-doc/usr/share/man/man7/lutefisk-doc.7.dh-new debian/lutefisk-doc/usr/share/man/man7/lutefisk-doc.7 chmod 0644 -- debian/lutefisk-doc/usr/share/man/man7/lutefisk-doc.7 + mv debian/lutefisk/usr/share/man/man1/lutefisk.1.dh-new debian/lutefisk/usr/share/man/man1/lutefisk.1 + chmod 0644 -- debian/lutefisk/usr/share/man/man1/lutefisk.1 dh_perl dh_link dh_strip_nondeterminism @@ -475,23 +511,23 @@ echo misc:Pre-Depends= >> debian/lutefisk-doc.substvars dpkg-gencontrol -plutefisk-doc -ldebian/changelog -Tdebian/lutefisk-doc.substvars -cdebian/control -Pdebian/lutefisk-doc dpkg-gencontrol: warning: Depends field of package lutefisk-doc: substitution variable ${shlibs:Depends} used, but is not defined - chmod 0644 -- debian/lutefisk-doc/DEBIAN/control - chown 0:0 -- debian/lutefisk-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/lutefisk/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/lutefisk/dbgsym-root/DEBIAN/control dpkg-gencontrol -plutefisk -ldebian/changelog -Tdebian/lutefisk.substvars -cdebian/control -Pdebian/lutefisk + chmod 0644 -- debian/lutefisk-doc/DEBIAN/control + chown 0:0 -- debian/lutefisk-doc/DEBIAN/control chmod 0644 -- debian/lutefisk/DEBIAN/control chown 0:0 -- debian/lutefisk/DEBIAN/control dh_md5sums install -m0755 -d debian/lutefisk/DEBIAN install -m0755 -d debian/lutefisk-doc/DEBIAN - cd debian/lutefisk >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/lutefisk-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/lutefisk-doc/DEBIAN/md5sums - chown 0:0 -- debian/lutefisk-doc/DEBIAN/md5sums + cd debian/lutefisk >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/lutefisk/DEBIAN/md5sums chown 0:0 -- debian/lutefisk/DEBIAN/md5sums install -m0755 -d debian/.debhelper/lutefisk/dbgsym-root/DEBIAN + chmod 0644 -- debian/lutefisk-doc/DEBIAN/md5sums + chown 0:0 -- debian/lutefisk-doc/DEBIAN/md5sums cd debian/.debhelper/lutefisk/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/lutefisk/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/lutefisk/dbgsym-root/DEBIAN/md5sums @@ -509,12 +545,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1449978/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1449978/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3622675 and its subdirectories -I: Current time: Wed Jul 9 04:21:10 -12 2025 -I: pbuilder-time-stamp: 1752078070 +I: removing directory /srv/workspace/pbuilder/1449978 and its subdirectories +I: Current time: Thu Jun 6 23:59:34 +14 2024 +I: pbuilder-time-stamp: 1717667974