Diff of the two buildlogs: -- --- b1/build.log 2024-06-02 10:27:45.756236828 +0000 +++ b2/build.log 2024-06-02 10:29:33.071667600 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jul 5 04:48:20 -12 2025 -I: pbuilder-time-stamp: 1751734100 +I: Current time: Mon Jun 3 00:27:48 +14 2024 +I: pbuilder-time-stamp: 1717324068 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,51 +28,83 @@ dpkg-source: info: applying build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/696468/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2993978/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 2 10:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2993978/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2993978/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='b6c86715cf7842f2b3cf7ebe61fca34c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='696468' - PS1='# ' - PS2='> ' + INVOCATION_ID=351d1bb4364245d0a7a35c437f290221 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2993978 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tL7AMKYl/pbuilderrc_bY2z --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tL7AMKYl/b1 --logfile b1/build.log libvamsas-client-java_0.2+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tL7AMKYl/pbuilderrc_LgFQ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tL7AMKYl/b2 --logfile b2/build.log libvamsas-client-java_0.2+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jul 5 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/696468/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 2 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2993978/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -344,7 +376,7 @@ Get: 222 http://deb.debian.org/debian unstable/main amd64 libcastor-core-java all 1.3.2-7 [54.0 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libcastor-xml-java all 1.3.2-7 [736 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] -Fetched 216 MB in 2s (117 MB/s) +Fetched 216 MB in 2s (100.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19719 files and directories currently installed.) @@ -1083,8 +1115,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Jul 5 16:49:54 UTC 2025. -Universal Time is now: Sat Jul 5 16:49:54 UTC 2025. +Local time is now: Sun Jun 2 10:28:51 UTC 2024. +Universal Time is now: Sun Jun 2 10:28:51 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasound2-data (1.2.11-1) ... @@ -1461,7 +1493,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libvamsas-client-java-0.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libvamsas-client-java_0.2+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/2993978/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2993978/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libvamsas-client-java-0.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libvamsas-client-java_0.2+dfsg-2_source.changes dpkg-buildpackage: info: source package libvamsas-client-java dpkg-buildpackage: info: source version 0.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1723,9 +1759,12 @@ warning: [options] source value 7 is obsolete and will be removed in a future release warning: [options] target value 7 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. -./src/uk/ac/vamsas/client/VorbaXmlBinder.java:301: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal - return new Object[] { obj, objrefs, new Boolean(sync), updatedObj }; - ^ +./src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:367: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + entries.put(entry, new Integer(entries.size())); + ^ +./src/uk/ac/vamsas/test/simpleclient/CommandProcessor.java:52: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + cv.add(new Integer(argneed)); + ^ ./src/uk/ac/vamsas/objects/core/AnnotationElement.java:140: warning: [removal] Float(float) in Float has been deprecated and marked for removal this._valueList.addElement(new java.lang.Float(vValue)); ^ @@ -1741,36 +1780,21 @@ ./src/uk/ac/vamsas/objects/core/AnnotationElement.java:798: warning: [removal] Float(float) in Float has been deprecated and marked for removal this._valueList.add(new java.lang.Float(vValueArray[i])); ^ -./src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java:367: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - entries.put(entry, new Integer(entries.size())); - ^ -./src/uk/ac/vamsas/objects/utils/Properties.java:100: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal - Boolean bool = new Boolean(p.getContent()); - ^ -./src/uk/ac/vamsas/objects/utils/Properties.java:107: warning: [removal] Float(String) in Float has been deprecated and marked for removal - Float fv = new Float(p.getContent()); - ^ -./src/uk/ac/vamsas/objects/utils/Properties.java:115: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal - Integer fv = new Integer(p.getContent()); - ^ +./src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasDatastore.java:275: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + posList.add(new Integer(p)); + ^ +./src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasDatastore.java:283: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + posList.add(new Integer(pos)); + ^ +./src/uk/ac/vamsas/client/VorbaXmlBinder.java:301: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal + return new Object[] { obj, objrefs, new Boolean(sync), updatedObj }; + ^ ./src/uk/ac/vamsas/objects/utils/document/VersionEntries.java:39: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal versions.put(ALPHA_VERSION, new Integer(0)); ^ ./src/uk/ac/vamsas/objects/utils/document/VersionEntries.java:40: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal versions.put(BETA_VERSION, new Integer(1)); ^ -./src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:397: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal - bootstrap = (new Integer(nbootstrap.group(1))).intValue(); - ^ -./src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:411: warning: [removal] Float(String) in Float has been deprecated and marked for removal - distance = (new Float(ndist.group(1))).floatValue(); - ^ -./src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:891: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - nindx = new Integer(1); - ^ -./src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:910: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal - occurence = new Integer(oval).intValue(); - ^ ./src/uk/ac/vamsas/objects/utils/Range.java:136: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal posList.add(new Integer(p)); ^ @@ -1789,20 +1813,41 @@ ./src/uk/ac/vamsas/objects/utils/Range.java:179: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal posList.add(new Integer(pos)); ^ +./src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:397: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal + bootstrap = (new Integer(nbootstrap.group(1))).intValue(); + ^ +./src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:411: warning: [removal] Float(String) in Float has been deprecated and marked for removal + distance = (new Float(ndist.group(1))).floatValue(); + ^ +./src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:891: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + nindx = new Integer(1); + ^ +./src/uk/ac/vamsas/objects/utils/trees/NewickFile.java:910: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal + occurence = new Integer(oval).intValue(); + ^ +./src/uk/ac/vamsas/objects/utils/Properties.java:100: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal + Boolean bool = new Boolean(p.getContent()); + ^ +./src/uk/ac/vamsas/objects/utils/Properties.java:107: warning: [removal] Float(String) in Float has been deprecated and marked for removal + Float fv = new Float(p.getContent()); + ^ +./src/uk/ac/vamsas/objects/utils/Properties.java:115: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal + Integer fv = new Integer(p.getContent()); + ^ ./src/uk/ac/vamsas/objects/core/descriptors/MapRangeTypeDescriptor.java:88: warning: [removal] Long(long) in Long has been deprecated and marked for removal return new java.lang.Long(target.getUnit()); ^ +./src/uk/ac/vamsas/objects/core/descriptors/AnnotationElementDescriptor.java:90: warning: [removal] Long(long) in Long has been deprecated and marked for removal + return new java.lang.Long(target.getPosition()); + ^ ./src/uk/ac/vamsas/objects/core/descriptors/SequenceTypeDescriptor.java:90: warning: [removal] Long(long) in Long has been deprecated and marked for removal return new java.lang.Long(target.getStart()); ^ ./src/uk/ac/vamsas/objects/core/descriptors/SequenceTypeDescriptor.java:137: warning: [removal] Long(long) in Long has been deprecated and marked for removal return new java.lang.Long(target.getEnd()); ^ -./src/uk/ac/vamsas/objects/core/descriptors/SegDescriptor.java:87: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - return new java.lang.Integer(target.getStart()); - ^ -./src/uk/ac/vamsas/objects/core/descriptors/SegDescriptor.java:136: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - return new java.lang.Integer(target.getEnd()); +./src/uk/ac/vamsas/objects/core/descriptors/ScoreDescriptor.java:85: warning: [removal] Float(float) in Float has been deprecated and marked for removal + return new java.lang.Float(target.getContent()); ^ ./src/uk/ac/vamsas/objects/core/descriptors/PosDescriptor.java:87: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal return new java.lang.Integer(target.getI()); @@ -1819,8 +1864,11 @@ ./src/uk/ac/vamsas/objects/core/descriptors/MapListDescriptor.java:229: warning: [removal] Long(long) in Long has been deprecated and marked for removal return new java.lang.Long(target.getEnd()); ^ -./src/uk/ac/vamsas/objects/core/descriptors/ScoreDescriptor.java:85: warning: [removal] Float(float) in Float has been deprecated and marked for removal - return new java.lang.Float(target.getContent()); +./src/uk/ac/vamsas/objects/core/descriptors/SegDescriptor.java:87: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + return new java.lang.Integer(target.getStart()); + ^ +./src/uk/ac/vamsas/objects/core/descriptors/SegDescriptor.java:136: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + return new java.lang.Integer(target.getEnd()); ^ ./src/uk/ac/vamsas/objects/core/descriptors/RangeDescriptor.java:92: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal return new java.lang.Integer(target.getSeqAStart()); @@ -1834,18 +1882,6 @@ ./src/uk/ac/vamsas/objects/core/descriptors/RangeDescriptor.java:233: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal return new java.lang.Integer(target.getSeqBEnd()); ^ -./src/uk/ac/vamsas/objects/core/descriptors/AnnotationElementDescriptor.java:90: warning: [removal] Long(long) in Long has been deprecated and marked for removal - return new java.lang.Long(target.getPosition()); - ^ -./src/uk/ac/vamsas/test/simpleclient/CommandProcessor.java:52: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - cv.add(new Integer(argneed)); - ^ -./src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasDatastore.java:275: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - posList.add(new Integer(p)); - ^ -./src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasDatastore.java:283: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - posList.add(new Integer(pos)); - ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. @@ -2025,12 +2061,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2993978/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2993978/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/696468 and its subdirectories -I: Current time: Sat Jul 5 04:50:44 -12 2025 -I: pbuilder-time-stamp: 1751734244 +I: removing directory /srv/workspace/pbuilder/2993978 and its subdirectories +I: Current time: Mon Jun 3 00:29:32 +14 2024 +I: pbuilder-time-stamp: 1717324172