Diff of the two buildlogs: -- --- b1/build.log 2024-05-19 19:52:00.622406754 +0000 +++ b2/build.log 2024-05-19 19:53:01.643811662 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun May 19 07:49:59 -12 2024 -I: pbuilder-time-stamp: 1716148199 +I: Current time: Sun Jun 22 16:15:03 +14 2025 +I: pbuilder-time-stamp: 1750558503 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,51 +29,83 @@ dpkg-source: info: applying missing-use-carp.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/964029/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3274114/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 22 02:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3274114/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3274114/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='64ee8d1c33ad48399f32e12712f9b7e6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='964029' - PS1='# ' - PS2='> ' + INVOCATION_ID=27570e11453a4dd88b486545b2d52f00 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3274114 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jpCnVmHj/pbuilderrc_PiTJ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jpCnVmHj/b1 --logfile b1/build.log libfreecontact-perl_0.08-9.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jpCnVmHj/pbuilderrc_xjJE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jpCnVmHj/b2 --logfile b2/build.log libfreecontact-perl_0.08-9.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 18 07:42 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/964029/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 20 14:05 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3274114/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -156,7 +188,7 @@ Get: 39 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libfreecontact0t64 amd64 1.0.21-13.1+b1 [80.3 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libfreecontact-dev amd64 1.0.21-13.1+b1 [89.0 kB] -Fetched 22.9 MB in 1s (24.6 MB/s) +Fetched 22.9 MB in 0s (71.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19718 files and directories currently installed.) @@ -337,7 +369,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libfreecontact-perl-0.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfreecontact-perl_0.08-9_source.changes +I: user script /srv/workspace/pbuilder/3274114/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3274114/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libfreecontact-perl-0.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libfreecontact-perl_0.08-9_source.changes dpkg-buildpackage: info: source package libfreecontact-perl dpkg-buildpackage: info: source version 0.08-9 dpkg-buildpackage: info: source distribution unstable @@ -369,12 +405,12 @@ dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libfreecontact-perl-0.08' -cp lib/FreeContact.pm blib/lib/FreeContact.pm -AutoSplitting blib/lib/FreeContact.pm (blib/lib/auto/FreeContact) Running Mkbootstrap for FreeContact () "/usr/bin/perl" "/usr/share/perl/5.38/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.38/ExtUtils/typemap' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/perlobject.map' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/typemap' -typemap '/build/reproducible-path/libfreecontact-perl-0.08/typemap' FreeContact.xs > FreeContact.xsc chmod 644 "FreeContact.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 +cp lib/FreeContact.pm blib/lib/FreeContact.pm +AutoSplitting blib/lib/FreeContact.pm (blib/lib/auto/FreeContact) mv FreeContact.xsc FreeContact.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DVERSION=\"0.08\" -DXS_VERSION=\"0.08\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.38/CORE" FreeContact.c cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -400,27 +436,27 @@ SSE2 veczweight, wchunk = 64 total weight (variation) of alignment = 620.777515304633 -seq weight loop for 1000 seqs took 0.002055 secs +seq weight loop for 1000 seqs took 0.002284 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.173816 secs +calculated pair frequency table in 0.022145 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 8.84408 secs, inverted matrix (incl LUf) in 22.1417 secs +LU factorization took 1.99104 secs, inverted matrix (incl LUf) in 5.99635 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 -all done in 22.7147 secs +all done in 6.09262 secs will use 1 OMP threads SSE2 veczweight, wchunk = 64 total weight (variation) of alignment = 561.595172234625 -seq weight loop for 1000 seqs took 0.002126 secs +seq weight loop for 1000 seqs took 0.002235 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.04316 secs +calculated pair frequency table in 0.023028 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) @@ -438,14 +474,14 @@ cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... -shrank covariance matrix in 5.36657 secs +shrank covariance matrix in 2.78476 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5 iteration = 6 iteration = 7 -7 iterations of glassofast took 1.65369 secs +7 iterations of glassofast took 1.48278 secs density = 0.00840588, target sp = 0.03, |density-target sp|/target sp = 0.719804 will try rho 0.00160258, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5 iteration = 6 iteration = 7 -7 iterations of glassofast took 2.11915 secs +7 iterations of glassofast took 1.83862 secs density = 0.0103365, target sp = 0.03, |density-target sp|/target sp = 0.655449 will try rho 0.000931119, exact solution  iteration = 1 iteration = 2will use 1 OMP threads @@ -453,11 +489,11 @@ total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.046099 secs +calculated pair frequency table in 0.024638 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 2.09903 secs, inverted matrix (incl LUf) in 6.89626 secs +LU factorization took 2.02954 secs, inverted matrix (incl LUf) in 5.97375 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 @@ -476,7 +512,7 @@ ok 10 - wtot precision test ok All tests successful. -Files=2, Tests=13, 43 wallclock secs ( 0.02 usr 0.00 sys + 21.37 cusr 0.12 csys = 21.51 CPU) +Files=2, Tests=13, 21 wallclock secs ( 0.02 usr 0.01 sys + 20.45 cusr 0.09 csys = 20.57 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libfreecontact-perl-0.08' create-stamp debian/debhelper-build-stamp @@ -522,12 +558,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3274114/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3274114/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/964029 and its subdirectories -I: Current time: Sun May 19 07:51:59 -12 2024 -I: pbuilder-time-stamp: 1716148319 +I: removing directory /srv/workspace/pbuilder/3274114 and its subdirectories +I: Current time: Sun Jun 22 16:16:00 +14 2025 +I: pbuilder-time-stamp: 1750558560