Diff of the two buildlogs: -- --- b1/build.log 2024-06-06 13:30:36.671014617 +0000 +++ b2/build.log 2024-06-06 14:35:10.270403275 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jul 9 07:20:36 -12 2025 -I: pbuilder-time-stamp: 1752088836 +I: Current time: Fri Jun 7 03:30:45 +14 2024 +I: pbuilder-time-stamp: 1717680645 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying do-not-install-potentials.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3013584/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3902800/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 6 13:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3902800/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3902800/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='5802d72826a646c4b8032958d6555ca5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3013584' - PS1='# ' - PS2='> ' + INVOCATION_ID=637e220e36314543a45e990b124a5a77 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3902800 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KsRPcP27/pbuilderrc_4Iay --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KsRPcP27/b1 --logfile b1/build.log lammps_20240207+dfsg-1.1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KsRPcP27/pbuilderrc_TBX9 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KsRPcP27/b2 --logfile b2/build.log lammps_20240207+dfsg-1.1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jul 9 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3013584/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 5 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3902800/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -919,7 +951,7 @@ Get: 726 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2024.20240401-2 [17.0 MB] Get: 727 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2024.20240401-2 [19.8 MB] Get: 728 http://deb.debian.org/debian unstable/main amd64 voro++-dev amd64 0.5+revert-to-0.4.6+dfsg1-1 [155 kB] -Fetched 742 MB in 18s (41.5 MB/s) +Fetched 742 MB in 28s (26.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19705 files and directories currently installed.) @@ -3226,8 +3258,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Jul 9 19:25:43 UTC 2025. -Universal Time is now: Wed Jul 9 19:25:43 UTC 2025. +Local time is now: Thu Jun 6 13:42:40 UTC 2024. +Universal Time is now: Thu Jun 6 13:42:40 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libcap2-bin (1:2.66-5) ... @@ -4099,7 +4131,11 @@ fakeroot is already the newest version (1.35-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lammps-20240207+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lammps_20240207+dfsg-1.1_source.changes +I: user script /srv/workspace/pbuilder/3902800/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3902800/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lammps-20240207+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lammps_20240207+dfsg-1.1_source.changes dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 20240207+dfsg-1.1 dpkg-buildpackage: info: source distribution unstable @@ -4365,12 +4401,12 @@ -- Using double precision FFTs -- Using threaded FFTs -- Using builtin distributed FFT algorithms --- Configuring done (38.2s) --- Generating done (1.0s) +-- Configuring done (97.2s) +-- Generating done (4.0s) -- Build files have been written to: /build/reproducible-path/lammps-20240207+dfsg/debian/build make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_build -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build - cd debian/build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd debian/build && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -P /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/lammps-20240207+dfsg/cmake -B/build/reproducible-path/lammps-20240207+dfsg/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 @@ -4378,323 +4414,290 @@ make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/fmt_format.h.dir/build.make CMakeFiles/fmt_format.h.dir/depend -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake 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'/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/info.h.dir/build.make CMakeFiles/info.h.dir/build -[ 3%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mixedjoint.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrixfun.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrixfun.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrixfun.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/matrixfun.cpp 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CMakeFiles/lammps.h.dir/build.make CMakeFiles/lammps.h.dir/build +[ 2%] Built target improper.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 3%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onbody.cpp.o +make -f CMakeFiles/kspace.h.dir/build.make CMakeFiles/kspace.h.dir/build +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/lattice.h.dir/build.make CMakeFiles/lattice.h.dir/build -[ 3%] Generating includes/lammps/input.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/input.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/input.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 3%] Built target fix.h +make -f 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includes/lammps/kspace.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/kspace.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/kspace.h make -f CMakeFiles/library.h.dir/build.make CMakeFiles/library.h.dir/build +[ 3%] Generating includes/lammps/lattice.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lattice.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lattice.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build 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includes/lammps/lammps.h +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lmptype.h.dir/DependInfo.cmake "--color=" make -f CMakeFiles/memory.h.dir/build.make CMakeFiles/memory.h.dir/depend -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lammps.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lammps.h -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/lmppython.h.dir/build.make CMakeFiles/lmppython.h.dir/build +/usr/bin/cmake -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/memory.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' @@ -4702,275 +4705,266 @@ make -f CMakeFiles/lmptype.h.dir/build.make CMakeFiles/lmptype.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 4%] Generating includes/lammps/library.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/library.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/library.h +make -f CMakeFiles/lmppython.h.dir/build.make CMakeFiles/lmppython.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 4%] Built target input.h -[ 4%] Generating includes/lammps/lmppython.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lmppython.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lmppython.h -[ 4%] Built target info.h -[ 4%] Built target lattice.h -make -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/depend +[ 3%] Generating includes/lammps/library.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/modify.h.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +/usr/bin/ar qc liblammps_h5md.a "CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o" +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/library.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/library.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/memory.h.dir/build.make CMakeFiles/memory.h.dir/build -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 4%] Built target kspace.h -[ 4%] Built target lammps.h -make -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/depend -[ 4%] Generating includes/lammps/lmptype.h -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/neighbor.h.dir/DependInfo.cmake "--color=" +[ 3%] Generating includes/lammps/lmptype.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lmptype.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lmptype.h +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +/usr/bin/ranlib liblammps_h5md.a +[ 3%] Built target lattice.h +make -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/depend make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/modify.h.dir/DependInfo.cmake "--color=" +[ 3%] Built target kspace.h +make -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/depend +[ 3%] Generating includes/lammps/lmppython.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/build -[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp +[ 3%] Generating includes/lammps/memory.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lmppython.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lmppython.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp -[ 5%] Built target library.h -[ 5%] Generating includes/lammps/modify.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/modify.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/modify.h -[ 5%] Generating includes/lammps/memory.h +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/neighbor.h.dir/DependInfo.cmake "--color=" /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/memory.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/memory.h -[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o +[ 3%] Built target lmptype.h make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/neigh_list.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/build -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp -[ 5%] Built target lmppython.h -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Generating includes/lammps/neighbor.h -[ 5%] Built target memory.h -[ 5%] Built target lmptype.h +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Built target h5md make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/depend -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neighbor.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neighbor.h -make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/depend +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Built target library.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/output.h.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/pair.h.dir/DependInfo.cmake "--color=" -[ 5%] Built target modify.h -[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/depend -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/platform.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Generating includes/lammps/modify.h make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/build +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/modify.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/modify.h +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Built target memory.h +make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Built target lmppython.h +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/pair.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/build +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/depend make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 3%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/platform.h.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/build -[ 6%] Generating includes/lammps/neigh_list.h +[ 4%] Generating includes/lammps/neigh_list.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neigh_list.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neigh_list.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/build +make -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neigh_list.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neigh_list.h -[ 6%] Built target neighbor.h -[ 6%] Generating includes/lammps/output.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/output.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/output.h -[ 6%] Generating includes/lammps/pair.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pair.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pair.h -[ 6%] Generating includes/lammps/platform.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/platform.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/platform.h -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 6%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 6%] Built target neigh_list.h +[ 4%] Generating includes/lammps/neighbor.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 6%] Built target pair.h -[ 6%] Built target output.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neighbor.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neighbor.h +[ 4%] Built target modify.h make -f CMakeFiles/pointers.h.dir/build.make CMakeFiles/pointers.h.dir/depend -[ 6%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/platform.h.dir/build.make CMakeFiles/platform.h.dir/build +[ 4%] Generating includes/lammps/pair.h cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/pointers.h.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp -[ 6%] Built target platform.h -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/pointers.h.dir/build.make CMakeFiles/pointers.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 6%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/onfunctions.cpp -[ 6%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 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-ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onsolver.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onsolver.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onsolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/onsolver.cpp -[ 6%] Linking C static library liblammps_h5md.a -/usr/bin/cmake -P CMakeFiles/h5md.dir/cmake_clean_target.cmake -/usr/bin/cmake -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1 -/usr/bin/ar qc liblammps_h5md.a "CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o" -[ 7%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/particle.cpp -/usr/bin/ranlib liblammps_h5md.a +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pair.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pair.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 7%] Built target h5md +[ 4%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o +[ 4%] Built target neigh_list.h +/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp +[ 4%] Generating includes/lammps/output.h make -f CMakeFiles/region.h.dir/build.make CMakeFiles/region.h.dir/depend +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/output.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/output.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/region.h.dir/DependInfo.cmake "--color=" +[ 4%] Generating includes/lammps/platform.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/platform.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/platform.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 4%] Built target neighbor.h +make -f CMakeFiles/pointers.h.dir/build.make CMakeFiles/pointers.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/region.h.dir/build.make CMakeFiles/region.h.dir/build -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/timer.h.dir/build.make CMakeFiles/timer.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/timer.h.dir/DependInfo.cmake "--color=" -[ 7%] Generating includes/lammps/region.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/region.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/region.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/timer.h.dir/build.make CMakeFiles/timer.h.dir/build +make -f CMakeFiles/timer.h.dir/build.make CMakeFiles/timer.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 7%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/poemsobject.cpp -[ 7%] Generating includes/lammps/timer.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/timer.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/timer.h -[ 7%] Built target region.h +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/timer.h.dir/DependInfo.cmake "--color=" +[ 4%] Built target pair.h make -f CMakeFiles/universe.h.dir/build.make CMakeFiles/universe.h.dir/depend +[ 4%] Built target output.h +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/universe.h.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/region.h.dir/build.make CMakeFiles/region.h.dir/build make -f CMakeFiles/update.h.dir/build.make CMakeFiles/update.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/update.h.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/universe.h.dir/build.make CMakeFiles/universe.h.dir/build +[ 4%] Generating includes/lammps/pointers.h +/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/pointers.h +[ 4%] Built target platform.h make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 7%] Built target timer.h +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/update.h.dir/DependInfo.cmake "--color=" make -f CMakeFiles/utils.h.dir/build.make CMakeFiles/utils.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/utils.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/update.h.dir/build.make CMakeFiles/update.h.dir/build +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/universe.h.dir/build.make CMakeFiles/universe.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/variable.h.dir/build.make 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem 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~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp:3: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o.d -o 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11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -c 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ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 11%] Built target poems -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT 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-I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp +[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp +[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp:3: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp:3: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 11%] 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ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o -MF 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp +[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, @@ -5158,31 +5193,55 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.h:9, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.h:4, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp +[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 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function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o @@ -5190,41 +5249,17 @@ [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.h:4, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp:1: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. 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-/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o -MF 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp:1: @@ -5232,8 +5267,6 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp:1: @@ -5241,12 +5274,6 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.h:5, @@ -5256,13 +5283,15 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.h:4, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); @@ -5277,8 +5306,25 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem 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-I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -c 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp:1: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, @@ -5290,20 +5336,29 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.h:11, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.h:4, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); @@ -5317,25 +5372,6 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.h:11, - from 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/usr/lib/x86_64-linux-gnu/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/fix_ipi.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/fix_ipi.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/fix_ipi.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MISC/fix_ipi.cpp /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)': /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:188:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 188 | fgets(line,sizeof(line),in); @@ -6828,13 +6856,21 @@ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:110:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 110 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/fix_srp.cpp.o /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:120:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:124:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 124 | fgets(line,sizeof(line),in); | 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CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP/pair_peri_lps_omp.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/OPENMP/pair_peri_lps_omp.cpp [ 99%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP/pair_peri_pmb_omp.cpp.o @@ -7843,7 +7879,7 @@ -e 's,@LAMMPS_SOURCE_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../src,g' \ -e 's,@LAMMPS_PYTHON_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../python,g' \ -e 's,@LAMMPS_DOC_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc,g' /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py.in > /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py -WARNING: The directory '/nonexistent/first-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. +WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. Obtaining file:///build/reproducible-path/lammps-20240207%2Bdfsg/doc/utils/converters Installing build dependencies: started Installing build dependencies: finished with status 'error' @@ -7852,12 +7888,12 @@ × pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> [8 lines of output] - WARNING: The directory '/nonexistent/first-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. - WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. + WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ ERROR: Could not find a version that satisfies the requirement setuptools>=40.8.0 (from versions: none) ERROR: No matching distribution found for setuptools>=40.8.0 [end of output] @@ -7880,7 +7916,11 @@ writing output... building [html]: targets for 987 source files that are out of date updating environment: [new config] 987 added, 0 changed, 0 removed -reading sources... [ 2%] Bibliography .. Classes_atom reading sources... [ 3%] Classes_input .. Commands_structure reading sources... [ 5%] Cplusplus .. Developer_parallel reading sources... [ 6%] Developer_platform .. Errors_warnings reading sources... [ 8%] Examples .. Howto_diffusion reading sources... [ 9%] Howto_dispersion .. Howto_nemd reading sources... [ 11%] Howto_output .. Howto_tip5p reading sources... [ 12%] Howto_triclinic .. Intro_authors reading sources... [ 14%] Intro_citing .. Library_objects reading sources... [ 15%] Library_properties .. Modify_gran_sub_mod reading sources... [ 17%] Modify_kspace .. Python_config reading sources... [ 18%] Python_create .. Python_run reading sources... [ 20%] Python_scatter .. Speed_omp reading sources... [ 21%] Speed_opt .. angle_cosine_shift_exp reading sources... [ 23%] angle_cosine_squared .. angle_style reading sources... [ 24%] angle_table .. atc_control_momentum reading sources... [ 26%] atc_control_thermal .. atc_hardy_on_the_fly reading sources... [ 27%] atc_hardy_rates .. atc_mesh_create_nodeset reading sources... [ 29%] atc_mesh_delete_elements .. atc_remove_molecule reading sources... [ 30%] atc_remove_source .. atc_write_atom_weights reading sources... [ 32%] atc_write_restart .. bond_harmonic_shift reading sources... [ 33%] bond_harmonic_shift_cut .. bond_zero reading sources... [ 35%] bonds .. compute_basal_atom reading sources... [ 36%] compute_body_local .. compute_coord_atom reading sources... [ 38%] compute_count_type .. compute_erotate_asphere reading sources... [ 39%] compute_erotate_rigid .. compute_hexorder_atom reading sources... [ 41%] compute_hma .. compute_msd_nongauss reading sources... [ 42%] compute_nbond_atom .. compute_property_grid reading sources... [ 44%] compute_property_local .. compute_smd_internal_energy reading sources... [ 45%] compute_smd_plastic_strain .. compute_smd_ulsph_strain_rate reading sources... [ 47%] compute_smd_ulsph_stress .. compute_temp_asphere reading sources... [ 48%] compute_temp_body .. compute_temp_sphere reading sources... [ 50%] compute_temp_uef .. dielectric reading sources... [ 52%] dihedral_charmm .. dihedral_spherical reading sources... [ 53%] dihedral_style .. dump_netcdf reading sources... [ 55%] dump_vtk .. fix_amoeba_pitorsion reading sources... [ 56%] fix_append_atoms .. fix_bocs reading sources... [ 58%] fix_bond_break .. fix_dpd_source reading sources... [ 59%] fix_drag .. fix_ffl reading sources... [ 61%] fix_filter_corotate .. fix_indent reading sources... [ 62%] fix_ipi .. fix_modify_atc_commands reading sources... [ 64%] fix_mol_swap .. fix_nphug reading sources... [ 65%] fix_npt_asphere .. fix_nve_eff reading sources... [ 67%] fix_nve_limit .. fix_oneway reading sources... [ 68%] fix_orient .. fix_print reading sources... [ 70%] fix_propel_self .. fix_rhok reading sources... [ 71%] fix_rigid .. fix_smd_wall_surface reading sources... [ 73%] fix_sph .. fix_tgnh_drude reading sources... [ 74%] fix_thermal_conductivity .. fix_wall_gran_region reading sources... [ 76%] fix_wall_piston .. improper_cossq reading sources... [ 77%] improper_cvff .. include reading sources... [ 79%] info .. min_style reading sources... [ 80%] minimize .. pair_atm reading sources... [ 82%] pair_awpmd .. pair_class2 reading sources... [ 83%] pair_coeff .. pair_dpd_fdt reading sources... [ 85%] pair_drip .. pair_gromacs reading sources... [ 86%] pair_gw .. pair_list reading sources... [ 88%] pair_lj .. pair_lubricate reading sources... [ 89%] pair_lubricateU .. pair_multi_lucy_rx reading sources... [ 91%] pair_nb3b .. pair_resquared reading sources... [ 92%] pair_saip_metal .. pair_sph_taitwater reading sources... [ 94%] pair_sph_taitwater_morris .. pair_tersoff_mod reading sources... [ 95%] pair_tersoff_zbl .. pairs reading sources... [ 97%] partition .. reset_timestep reading sources... [ 98%] restart .. third_order reading sources... [100%] timer .. write_restart +reading sources... [ 2%] Bibliography .. Commands_compute reading sources... [ 4%] Commands_dump .. Developer_par_part reading sources... [ 7%] Developer_parallel .. Howto_barostat reading sources... [ 9%] Howto_bioFF .. Howto_moltemplate reading sources... [ 11%] Howto_multiple .. Howto_walls reading sources... [ 13%] Howto_wsl .. Library_create reading sources... [ 16%] Library_execute .. Modify_pair reading sources... [ 18%] Modify_region .. Python_neighbor reading sources... [ 20%] Python_objects .. Speed_tips reading sources... [ 22%] Tools .. angle_mesocnt reading sources... [ 24%] angle_mm3 .. atc_decomposition reading sources... [ 27%] atc_electron_integration .. atc_material reading sources... [ 29%] atc_mesh_add_to_nodeset .. atc_remove_source reading sources... [ 31%] atc_remove_species .. bond_coeff reading sources... [ 33%] bond_fene .. bond_zero reading sources... [ 36%] bonds .. compute_chunk_spread_atom reading sources... [ 38%] compute_cluster_atom .. compute_entropy_atom reading sources... [ 40%] compute_erotate_asphere .. compute_ke_atom reading sources... [ 42%] compute_ke_atom_eff .. compute_property_atom reading sources... [ 44%] compute_property_chunk .. compute_smd_tlsph_dt reading sources... [ 47%] compute_smd_tlsph_num_neighs .. compute_tally reading sources... [ 49%] compute_tdpd_cc_atom .. compute_vacf reading sources... [ 51%] compute_vcm_chunk .. dihedral_nharmonic reading sources... [ 53%] dihedral_none .. dynamical_matrix reading sources... [ 56%] echo .. fix_ave_spatial reading sources... [ 58%] fix_ave_spatial_sphere .. fix_drude reading sources... [ 60%] fix_drude_transform .. fix_halt reading sources... [ 62%] fix_heat .. fix_mol_swap reading sources... [ 64%] fix_momentum .. fix_nve_asphere reading sources... [ 67%] fix_nve_asphere_noforce .. fix_oneway reading sources... [ 69%] fix_orient .. fix_qeq_comb reading sources... [ 71%] fix_qeq_reaxff .. fix_smd_setvel reading sources... [ 73%] fix_smd_wall_surface .. fix_vector reading sources... [ 76%] fix_viscosity .. improper_class2 reading sources... [ 78%] improper_coeff .. kspace_style reading sources... [ 80%] label .. pair_aip_water_2dm reading sources... [ 82%] pair_airebo .. pair_cosine_squared reading sources... [ 84%] pair_coul .. pair_gauss reading sources... [ 87%] pair_gayberne .. pair_lj_cubic reading sources... [ 89%] pair_lj_cut_coul .. pair_mliap reading sources... [ 91%] pair_modify .. pair_sdpd_taitwater_isothermal reading sources... [ 93%] pair_smatb .. pair_style reading sources... [ 96%] pair_sw .. partition reading sources... [ 98%] plugin .. tad reading sources... [100%] temper .. write_restart +WARNING: unknown directive or role name: f:func +/build/reproducible-path/lammps-20240207+dfsg/doc/src/Classes_lammps.rst:4: ERROR: Unknown interpreted text role "f:func". +WARNING: unknown directive or role name: f:func +:4: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:mod @@ -10740,10 +10780,6 @@ :o integer(c_int) status [optional]: 1 when all ranks had the error, 2 on a single-rank error. :to: :cpp:func:`lammps_get_last_error_message` -WARNING: unknown directive or role name: f:func -/build/reproducible-path/lammps-20240207+dfsg/doc/src/Classes_lammps.rst:4: ERROR: Unknown interpreted text role "f:func". -WARNING: unknown directive or role name: f:func -:4: ERROR: Unknown interpreted text role "f:func". looking for now-outdated files... none found pickling environment... done checking consistency... done @@ -10751,7 +10787,7 @@ copying assets... copying static files... done copying extra files... done done -writing output... [ 2%] Build .. Classes_input writing output... [ 3%] Classes_lammps .. Cplusplus writing output... [ 5%] Developer .. Developer_platform writing output... [ 6%] Developer_plugins .. Examples writing output... [ 8%] Fortran .. Howto_dispersion writing output... [ 9%] Howto_drude .. Howto_output writing output... [ 11%] Howto_peri .. Howto_triclinic writing output... [ 12%] Howto_type_labels .. Intro_citing writing output... [ 14%] Intro_features .. Library_properties writing output... [ 15%] Library_scatter .. Modify_kspace writing output... [ 17%] Modify_min .. Python_create writing output... [ 18%] Python_error .. Python_scatter writing output... [ 20%] Python_trouble .. Speed_opt writing output... [ 21%] Speed_packages .. angle_cosine_squared writing output... [ 23%] angle_cross .. angle_table writing output... [ 24%] angle_write .. atc_control_thermal writing output... [ 26%] atc_decomposition .. atc_hardy_rates writing output... [ 27%] atc_initial .. atc_mesh_delete_elements writing output... [ 29%] atc_mesh_nodeset_to_elementset .. atc_remove_source writing output... [ 30%] atc_remove_species .. atc_write_restart writing output... [ 32%] atom_modify .. bond_harmonic_shift_cut writing output... [ 33%] bond_hybrid .. bonds writing output... [ 35%] boundary .. compute_body_local writing output... [ 36%] compute_bond .. compute_count_type writing output... [ 38%] compute_damage_atom .. compute_erotate_rigid writing output... [ 39%] compute_erotate_sphere .. compute_hma writing output... [ 41%] compute_improper .. compute_nbond_atom writing output... [ 42%] compute_omega_chunk .. compute_property_local writing output... [ 44%] compute_ptm_atom .. compute_smd_plastic_strain writing output... [ 45%] compute_smd_plastic_strain_rate .. compute_smd_ulsph_stress writing output... [ 47%] compute_smd_vol .. compute_temp_body writing output... [ 48%] compute_temp_chunk .. compute_temp_uef writing output... [ 50%] compute_ti .. dihedral_charmm writing output... [ 52%] dihedral_class2 .. dihedral_style writing output... [ 53%] dihedral_table .. dump_vtk writing output... [ 55%] dumps .. fix_append_atoms writing output... [ 56%] fix_atc .. fix_bond_break writing output... [ 58%] fix_bond_create .. fix_drag writing output... [ 59%] fix_drude .. fix_filter_corotate writing output... [ 61%] fix_flow_gauss .. fix_ipi writing output... [ 62%] fix_langevin .. fix_mol_swap writing output... [ 64%] fix_momentum .. fix_npt_asphere writing output... [ 65%] fix_npt_body .. fix_nve_limit writing output... [ 67%] fix_nve_line .. fix_orient writing output... [ 68%] fix_orient_eco .. fix_propel_self writing output... [ 70%] fix_property_atom .. fix_rigid writing output... [ 71%] fix_rigid_meso .. fix_sph writing output... [ 73%] fix_sph_stationary .. fix_thermal_conductivity writing output... [ 74%] fix_ti_spring .. fix_wall_piston writing output... [ 76%] fix_wall_reflect .. improper_cvff writing output... [ 77%] improper_distance .. info writing output... [ 79%] jump .. minimize writing output... 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[ 13%] Install .. Library_execute writing output... [ 16%] Library_neighbor .. Modify_region writing output... [ 18%] Modify_requirements .. Python_objects writing output... [ 20%] Python_overview .. Tools writing output... [ 22%] accel_styles .. angle_mm3 writing output... [ 24%] angle_none .. atc_electron_integration writing output... [ 27%] atc_equilibrium_start .. atc_mesh_add_to_nodeset writing output... [ 29%] atc_mesh_create .. atc_remove_species writing output... [ 31%] atc_reset_atomic_reference .. bond_fene writing output... [ 33%] bond_fene_expand .. bonds writing output... [ 36%] boundary .. compute_cluster_atom writing output... [ 38%] compute_cna_atom .. compute_erotate_asphere writing output... [ 40%] compute_erotate_rigid .. compute_ke_atom_eff writing output... [ 42%] compute_ke_eff .. compute_property_chunk writing output... [ 44%] compute_property_grid .. compute_smd_tlsph_num_neighs writing output... 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[100%] JPG/WF_LJ.jpg @@ -13673,7 +13709,7 @@ 1 by 1 by 1 MPI processor grid Created 8141 atoms using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) - create_atoms CPU = 0.019 seconds + create_atoms CPU = 0.003 seconds 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary @@ -13734,20 +13770,20 @@ 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 -Loop time of 19.4171 on 1 procs for 5000 steps with 8141 atoms +Loop time of 11.7731 on 1 procs for 5000 steps with 8141 atoms -Performance: 66745.454 tau/day, 257.506 timesteps/s, 2.096 Matom-step/s -40.6% CPU use with 1 MPI tasks x 1 OpenMP threads +Performance: 110081.810 tau/day, 424.698 timesteps/s, 3.457 Matom-step/s +80.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 16.377 | 16.377 | 16.377 | 0.0 | 84.34 -Neigh | 1.1186 | 1.1186 | 1.1186 | 0.0 | 5.76 -Comm | 0.035286 | 0.035286 | 0.035286 | 0.0 | 0.18 -Output | 0.0020311 | 0.0020311 | 0.0020311 | 0.0 | 0.01 -Modify | 1.397 | 1.397 | 1.397 | 0.0 | 7.19 -Other | | 0.4873 | | | 2.51 +Pair | 9.8061 | 9.8061 | 9.8061 | 0.0 | 83.29 +Neigh | 0.50941 | 0.50941 | 0.50941 | 0.0 | 4.33 +Comm | 0.020165 | 0.020165 | 0.020165 | 0.0 | 0.17 +Output | 0.0024621 | 0.0024621 | 0.0024621 | 0.0 | 0.02 +Modify | 1.0714 | 1.0714 | 1.0714 | 0.0 | 9.10 +Other | | 0.3635 | | | 3.09 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -13760,7 +13796,7 @@ Ave neighs/atom = 8.7690701 Neighbor list builds = 100 Dangerous builds = 0 -Total wall time: 0:00:19 +Total wall time: 0:00:11 rm -rf test mkdir test; cp examples/crack/* test/ cd test; mpirun -np 2 --allow-run-as-root --oversubscribe /build/reproducible-path/lammps-20240207+dfsg/debian/build/lmp < in.crack @@ -13834,20 +13870,20 @@ 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 -Loop time of 20.754 on 2 procs for 5000 steps with 8141 atoms +Loop time of 10.3209 on 2 procs for 5000 steps with 8141 atoms -Performance: 62445.927 tau/day, 240.918 timesteps/s, 1.961 Matom-step/s -43.3% CPU use with 2 MPI tasks x 1 OpenMP threads +Performance: 125570.766 tau/day, 484.455 timesteps/s, 3.944 Matom-step/s +57.3% CPU use with 2 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 6.5061 | 7.5054 | 8.5046 | 36.5 | 36.16 -Neigh | 0.42945 | 0.51621 | 0.60297 | 12.1 | 2.49 -Comm | 9.5313 | 9.9014 | 10.272 | 11.8 | 47.71 -Output | 0.039657 | 0.067944 | 0.096231 | 10.9 | 0.33 -Modify | 0.70969 | 0.72543 | 0.74118 | 1.8 | 3.50 -Other | | 2.038 | | | 9.82 +Pair | 4.807 | 5.2594 | 5.7119 | 19.7 | 50.96 +Neigh | 0.31511 | 0.34511 | 0.3751 | 5.1 | 3.34 +Comm | 2.9362 | 3.2126 | 3.489 | 15.4 | 31.13 +Output | 0.002061 | 0.003022 | 0.0039831 | 1.7 | 0.03 +Modify | 0.7146 | 0.72045 | 0.7263 | 0.7 | 6.98 +Other | | 0.7803 | | | 7.56 Nlocal: 4070.5 ave 4085 max 4056 min Histogram: 1 0 0 0 0 0 0 0 0 1 @@ -13860,7 +13896,7 @@ Ave neighs/atom = 8.7704213 Neighbor list builds = 106 Dangerous builds = 0 -Total wall time: 0:00:20 +Total wall time: 0:00:10 rm -rf test make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_test -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps -Nliblammps-dev -Nliblammps0t64 -Npython3-lammps @@ -13870,7 +13906,7 @@ dh_testroot -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_prep -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_auto_install -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps-doc -Nlammps-data -Nlammps-examples - cd debian/build && make -j42 install DESTDIR=/build/reproducible-path/lammps-20240207\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd debian/build && make -j20 install DESTDIR=/build/reproducible-path/lammps-20240207\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -P /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/lammps-20240207+dfsg/cmake -B/build/reproducible-path/lammps-20240207+dfsg/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 @@ -13952,38 +13988,38 @@ creating build creating build/lib creating build/lib/lammps -copying lammps/data.py -> build/lib/lammps -copying lammps/core.py -> build/lib/lammps -copying lammps/pylammps.py -> build/lib/lammps copying lammps/__init__.py -> build/lib/lammps copying lammps/constants.py -> build/lib/lammps -copying lammps/numpy_wrapper.py -> build/lib/lammps +copying lammps/pylammps.py -> build/lib/lammps copying lammps/formats.py -> build/lib/lammps +copying lammps/numpy_wrapper.py -> build/lib/lammps +copying lammps/core.py -> build/lib/lammps +copying lammps/data.py -> build/lib/lammps creating build/lib/lammps/mliap -copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap -copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap copying lammps/mliap/__init__.py -> build/lib/lammps/mliap -copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap +copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap copying lammps/mliap/loader.py -> build/lib/lammps/mliap +copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap +copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/constants.py -> build/bdist.linux-x86_64/wheel/lammps creating build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/lammps/mliap copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-x86_64/wheel/lammps/mliap +copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/lammps/mliap copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/data.py -> build/bdist.linux-x86_64/wheel/lammps -copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-x86_64/wheel/lammps/mliap +copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-x86_64/wheel/lammps/mliap copying build/lib/lammps/pylammps.py -> build/bdist.linux-x86_64/wheel/lammps -copying build/lib/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/lammps -copying build/lib/lammps/constants.py -> build/bdist.linux-x86_64/wheel/lammps -copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-x86_64/wheel/lammps copying build/lib/lammps/formats.py -> build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/data.py -> build/bdist.linux-x86_64/wheel/lammps running install_egg_info running egg_info creating lammps.egg-info @@ -13996,7 +14032,7 @@ Copying lammps.egg-info to build/bdist.linux-x86_64/wheel/lammps-2024.2.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/lammps-2024.2.7.dist-info/WHEEL -creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/.tmp-1b5yiimp/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/.tmp-h_knqf0s/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'lammps/__init__.py' adding 'lammps/constants.py' adding 'lammps/core.py' @@ -14037,38 +14073,38 @@ creating build creating build/lib creating build/lib/lammps -copying lammps/data.py -> build/lib/lammps -copying lammps/core.py -> build/lib/lammps -copying lammps/pylammps.py -> build/lib/lammps copying lammps/__init__.py -> build/lib/lammps copying lammps/constants.py -> build/lib/lammps -copying lammps/numpy_wrapper.py -> build/lib/lammps +copying lammps/pylammps.py -> build/lib/lammps copying lammps/formats.py -> build/lib/lammps +copying lammps/numpy_wrapper.py -> build/lib/lammps +copying lammps/core.py -> build/lib/lammps +copying lammps/data.py -> build/lib/lammps creating build/lib/lammps/mliap -copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap -copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap copying lammps/mliap/__init__.py -> build/lib/lammps/mliap -copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap +copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap copying lammps/mliap/loader.py -> build/lib/lammps/mliap +copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap +copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/constants.py -> build/bdist.linux-x86_64/wheel/lammps creating build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/lammps/mliap copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-x86_64/wheel/lammps/mliap +copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/lammps/mliap copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/data.py -> build/bdist.linux-x86_64/wheel/lammps -copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-x86_64/wheel/lammps/mliap +copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-x86_64/wheel/lammps/mliap copying build/lib/lammps/pylammps.py -> build/bdist.linux-x86_64/wheel/lammps -copying build/lib/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/lammps -copying build/lib/lammps/constants.py -> build/bdist.linux-x86_64/wheel/lammps -copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-x86_64/wheel/lammps copying build/lib/lammps/formats.py -> build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/data.py -> build/bdist.linux-x86_64/wheel/lammps running install_egg_info running egg_info creating lammps.egg-info @@ -14081,7 +14117,7 @@ Copying lammps.egg-info to build/bdist.linux-x86_64/wheel/lammps-2024.2.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/lammps-2024.2.7.dist-info/WHEEL -creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.11_lammps/.tmp-55z1celm/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.11_lammps/.tmp-k2036165/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'lammps/__init__.py' adding 'lammps/constants.py' adding 'lammps/core.py' @@ -14156,7 +14192,7 @@ 1 by 1 by 1 MPI processor grid Created 4000 atoms using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) - create_atoms CPU = 0.010 seconds + create_atoms CPU = 0.002 seconds Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 20 steps, delay = 0 steps, check = no @@ -14178,20 +14214,20 @@ Step Temp E_pair E_mol TotEng Press 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 100 0.75715334 -5.7581426 0 -4.6226965 0.20850222 -Loop time of 1.01741 on 1 procs for 100 steps with 4000 atoms +Loop time of 0.459911 on 1 procs for 100 steps with 4000 atoms -Performance: 42460.714 tau/day, 98.289 timesteps/s, 393.155 katom-step/s -33.2% CPU use with 1 MPI tasks x 1 OpenMP threads +Performance: 93931.261 tau/day, 217.433 timesteps/s, 869.734 katom-step/s +93.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 0.81094 | 0.81094 | 0.81094 | 0.0 | 79.71 -Neigh | 0.15537 | 0.15537 | 0.15537 | 0.0 | 15.27 -Comm | 0.023357 | 0.023357 | 0.023357 | 0.0 | 2.30 -Output | 5.1145e-05 | 5.1145e-05 | 5.1145e-05 | 0.0 | 0.01 -Modify | 0.025794 | 0.025794 | 0.025794 | 0.0 | 2.54 -Other | | 0.0019 | | | 0.19 +Pair | 0.38614 | 0.38614 | 0.38614 | 0.0 | 83.96 +Neigh | 0.052363 | 0.052363 | 0.052363 | 0.0 | 11.39 +Comm | 0.0077938 | 0.0077938 | 0.0077938 | 0.0 | 1.69 +Output | 8.1352e-05 | 8.1352e-05 | 8.1352e-05 | 0.0 | 0.02 +Modify | 0.011342 | 0.011342 | 0.011342 | 0.0 | 2.47 +Other | | 0.002187 | | | 0.48 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -14204,7 +14240,7 @@ Ave neighs/atom = 37.5905 Neighbor list builds = 5 Dangerous builds not checked -Total wall time: 0:00:01 +Total wall time: 0:00:00 make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_python3 -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_installsystemduser -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build @@ -14220,3197 +14256,3197 @@ debian/rules execute_after_dh_fixperms-indep make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' find /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ -type f -a -not -name *.sh -print -exec chmod 644 {} \; -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/log.30Oct23.nb3b.screened.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/log.27Nov18.nb3b.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/log.27Nov18.nb3b.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/log.30Oct23.nb3b.screened.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/in.nb3b.screened -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/README.nb3b.screened -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/in.nb3b -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/Table_NP.dat -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/data.nb3b -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/MOH.nb3b.harmonic -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nb3b/data.NaPO3 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/log.13Sept18.icos.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/log.13Sept18.fcc.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/in.icos 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-/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/voronoi/log.27Nov18.voronoi.data.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/voronoi/log.27Nov18.voronoi.2d.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/voronoi/in.voronoi.2d -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/voronoi/log.27Nov18.voronoi.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/voronoi/log.27Nov18.voronoi.data.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/voronoi/log.27Nov18.voronoi.2d.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/voronoi/in.voronoi 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-/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/meam_spline/log.17Dec2022.meam-spline.Si.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/python/README.md -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/python/results/out.dynamt -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/python/results/dynmat.dat -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/python/dynmat.py -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/Silicon/ff-silicon.lmp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/Silicon/in.silicon -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/Silicon/README.md -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/Silicon/results/out.silicon -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/Silicon/results/dynmat.dat -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/Silicon/lmp_bank/amorphous_silicon.lmp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/PACKAGES/phonon/dynamical_matrix_command/Silicon/lmp_bank/silicon_8.lmp 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-/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/Makefile.serial -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/CMakeLists.txt -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/Makefile.macos -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/.clang-format -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/LAMMPSInterfaceCXX.cmake -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/bond_zero2.h -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/Makefile -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_morse2.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_morse2_omp.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/nve2plugin.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/improper_zero2.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/fix_nve2.h -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_morse2_omp.h -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/dihedral_zero2.h -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/fix_nve2.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/angle_zero2.h -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_zero2.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/bond_zero2.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/improper_zero2.h -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/pair_morse2.h -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/zero2plugin.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/angle_zero2.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/Makefile.common -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/morse2plugin.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/plugins/helloplugin.cpp +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/fire/in.neb.sivac.fire +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/fire/log.12Jan22.meam.fire.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/fire/log.10Jan22.neb.sivac.abcfire.g++.8 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/fire/initial.sivac +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/fire/log.10Jan22.abcfire_mod.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/fire/log.10Jan22.cg.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/fire/FeTiC.meam +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/msst/log.08Feb21.msst.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/msst/log.08Feb21.msst.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/msst/in.msst +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nemd/in.nemd +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nemd/log.27Nov18.nemd.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/nemd/log.27Nov18.nemd.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/h2o-co2.data +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.molecular-mix.g++.1 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+/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/co2.mol +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.tmpl-data-mix.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.tmpl-restart-mix.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.mol-restart-mix.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.tmpl-restart-mix.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/cyclohexane.mol +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.template-mix.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/in.tmpl-restart-mix +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/in.mol-restart-mix +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.mol-data-mix.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.tmpl-data-mix.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.mol-restart-mix.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.hybrid.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.mol-data-mix.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/template-mix.data +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/molecular-mix.data +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/template/log.22Oct20.molecular-mix.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peptide/data.peptide +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peptide/log.27Nov18.peptide.g++.4 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peptide/in.peptide +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/peptide/log.27Nov18.peptide.g++.1 make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_missing -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules override_dh_dwz @@ -17428,15 +17464,15 @@ dpkg-gencontrol: warning: package lammps-examples: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_builddeb -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -dpkg-deb: building package 'liblammps0t64' in '../liblammps0t64_20240207+dfsg-1.1_amd64.deb'. dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_20240207+dfsg-1.1_amd64.deb'. dpkg-deb: building package 'liblammps-dev' in '../liblammps-dev_20240207+dfsg-1.1_amd64.deb'. -dpkg-deb: building package 'liblammps0t64-dbgsym' in '../liblammps0t64-dbgsym_20240207+dfsg-1.1_amd64.deb'. -dpkg-deb: building package 'lammps-examples' in '../lammps-examples_20240207+dfsg-1.1_all.deb'. dpkg-deb: building package 'lammps-data' in '../lammps-data_20240207+dfsg-1.1_all.deb'. +dpkg-deb: building package 'lammps-examples' in '../lammps-examples_20240207+dfsg-1.1_all.deb'. +dpkg-deb: building package 'liblammps0t64-dbgsym' in '../liblammps0t64-dbgsym_20240207+dfsg-1.1_amd64.deb'. +dpkg-deb: building package 'liblammps0t64' in '../liblammps0t64_20240207+dfsg-1.1_amd64.deb'. dpkg-deb: building package 'lammps-doc' in '../lammps-doc_20240207+dfsg-1.1_all.deb'. -dpkg-deb: building package 'lammps' in '../lammps_20240207+dfsg-1.1_amd64.deb'. dpkg-deb: building package 'python3-lammps' in '../python3-lammps_20240207+dfsg-1.1_amd64.deb'. +dpkg-deb: building package 'lammps' in '../lammps_20240207+dfsg-1.1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../lammps_20240207+dfsg-1.1_amd64.buildinfo dpkg-genchanges --build=binary -O../lammps_20240207+dfsg-1.1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -17444,12 +17480,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3902800/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3902800/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3013584 and its subdirectories -I: Current time: Wed Jul 9 07:53:35 -12 2025 -I: pbuilder-time-stamp: 1752090815 +I: removing directory /srv/workspace/pbuilder/3902800 and its subdirectories +I: Current time: Fri Jun 7 04:35:09 +14 2024 +I: pbuilder-time-stamp: 1717684509