Diff of the two buildlogs: -- --- b1/build.log 2024-05-21 13:11:13.524028081 +0000 +++ b2/build.log 2024-05-21 13:18:00.686710368 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jun 23 07:30:11 -12 2025 -I: pbuilder-time-stamp: 1750707011 +I: Current time: Wed May 22 03:11:16 +14 2024 +I: pbuilder-time-stamp: 1716297076 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying modify_testing.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/763265/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1196183/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 21 13:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1196183/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1196183/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='578812d233754678b0b60a713ccc8744' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='763265' - PS1='# ' - PS2='> ' + INVOCATION_ID=a525eae7031c40e2ba1d587b353c73e4 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1196183 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.exHUj6pR/pbuilderrc_KNSx --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.exHUj6pR/b1 --logfile b1/build.log icb-utils_2.0.1+git20161002.afee1d9-5.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.exHUj6pR/pbuilderrc_mPB8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.exHUj6pR/b2 --logfile b2/build.log icb-utils_2.0.1+git20161002.afee1d9-5.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 23 14:06 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/763265/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 21 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1196183/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -407,7 +439,7 @@ Get: 261 http://deb.debian.org/debian unstable/main amd64 maven all 3.8.7-2 [19.3 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 maven-repo-helper all 1.11 [142 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 maven-debian-helper all 2.6.4 [108 kB] -Fetched 248 MB in 5s (45.7 MB/s) +Fetched 248 MB in 11s (23.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19718 files and directories currently installed.) @@ -1268,8 +1300,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Jun 23 19:33:05 UTC 2025. -Universal Time is now: Mon Jun 23 19:33:05 UTC 2025. +Local time is now: Tue May 21 13:15:50 UTC 2024. +Universal Time is now: Tue May 21 13:15:50 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1676,7 +1708,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../icb-utils_2.0.1+git20161002.afee1d9-5_source.changes +I: user script /srv/workspace/pbuilder/1196183/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1196183/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../icb-utils_2.0.1+git20161002.afee1d9-5_source.changes dpkg-buildpackage: info: source package icb-utils dpkg-buildpackage: info: source version 2.0.1+git20161002.afee1d9-5 dpkg-buildpackage: info: source distribution unstable @@ -1767,16 +1803,16 @@ [INFO] Adding the --ignore-source-errors option [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings -[WARNING] Loading source files for package edu.cornell.med.icb.util... -[WARNING] Loading source files for package edu.cornell.med.icb.cli... +[WARNING] Loading source files for package org.apache.unicode... +[WARNING] Loading source files for package edu.cornell.med.icb.identifier... +[WARNING] Loading source files for package edu.cornell.med.icb.net... [WARNING] Loading source files for package edu.cornell.med.icb.stat... +[WARNING] Loading source files for package edu.cornell.med.icb.io... +[WARNING] Loading source files for package edu.cornell.med.icb.util... +[WARNING] Loading source files for package edu.cornell.med.icb.maps... [WARNING] Loading source files for package edu.cornell.med.icb.ip... -[WARNING] Loading source files for package edu.cornell.med.icb.net... -[WARNING] Loading source files for package edu.cornell.med.icb.identifier... [WARNING] Loading source files for package edu.cornell.med.icb.iterators... -[WARNING] Loading source files for package edu.cornell.med.icb.maps... -[WARNING] Loading source files for package edu.cornell.med.icb.io... -[WARNING] Loading source files for package org.apache.unicode... +[WARNING] Loading source files for package edu.cornell.med.icb.cli... [WARNING] Constructing Javadoc information... [WARNING] Building index for all the packages and classes... [WARNING] Standard Doclet version 17.0.11+9-Debian-1 @@ -1852,50 +1888,50 @@ [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/package-summary.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/package-tree.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/serialized-form.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ProcessEstimator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/VersionUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/RandomAdapter.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/BoundedPriorityQueue.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/SimpleChecksum.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBFilenameUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringNormalizer.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/cli/class-use/UseModality.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/LinearRegression.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SensitivityCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/class-use/UnicodeCharUtil.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/IndexedIdentifier.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/PropertyMappable.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/DoubleIndexedIdentifier.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/SyncPipe.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/CommandExecutor.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AccuracyCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/RootMeanSquaredErrorCalculator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MinMaxCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SensitivityCalculator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MatthewsCorrelationCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AccuracyCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/PredictionStatisticCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/LinearRegression.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/ZScoreCalculator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AreaUnderTheRocCurveCalculator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SpecificityCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/PredictionStatisticCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/RootMeanSquaredErrorCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpAddress.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/CommandExecutor.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/SyncPipe.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/IndexedIdentifier.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/PropertyMappable.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/DoubleIndexedIdentifier.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TsvLineIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/IteratorIterable.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/FlatteningIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TextFileLineIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/PreSortedMergeTextFilesLineIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/RecursiveFileListIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/maps/class-use/LinkedHashToMultiTypeMap.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TsvToFromMap.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.SearchInClasspath.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectOutputStream.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionsParsingException.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionField.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionField.FieldType.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionsParsingException.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectInputStream.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectOutputStream.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TSVReader.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectInputStream.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TsvToFromMap.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionsParser.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/class-use/UnicodeCharUtil.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringUtils.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringNormalizer.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/SimpleChecksum.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBFilenameUtils.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/VersionUtils.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/BoundedPriorityQueue.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/RandomAdapter.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ProcessEstimator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/maps/class-use/LinkedHashToMultiTypeMap.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpAddress.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpUtils.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/RecursiveFileListIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TextFileLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/FlatteningIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TsvLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/IteratorIterable.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/PreSortedMergeTextFilesLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/cli/class-use/UseModality.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/cli/package-use.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/package-use.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/package-use.html... @@ -1919,8 +1955,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 8.218 s -[INFO] Finished at: 2025-06-23T07:33:45-12:00 +[INFO] Total time: 20.628 s +[INFO] Finished at: 2024-05-22T03:17:23+14:00 [INFO] ------------------------------------------------------------------------ jh_build -O--buildsystem=maven dh_auto_test -O--buildsystem=maven @@ -1961,23 +1997,370 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running edu.cornell.med.icb.util.TestSimpleChecksum -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.037 s - in edu.cornell.med.icb.util.TestSimpleChecksum -[INFO] Running edu.cornell.med.icb.util.TestVersionUtils -07:33:47.277 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN -07:33:47.280 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN -07:33:47.282 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: 2.6 -[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.055 s - in edu.cornell.med.icb.util.TestVersionUtils +[INFO] Running edu.cornell.med.icb.identifier.TestIndexedIdentifier +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.18 s - in edu.cornell.med.icb.identifier.TestIndexedIdentifier +[INFO] Running edu.cornell.med.icb.io.TestConditionsParser +03:17:30.365 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false +03:17:30.371 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' +03:17:30.371 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean +03:17:30.373 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 +03:17:30.373 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' +03:17:30.373 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' +03:17:30.374 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: +03:17:30.374 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' +03:17:30.374 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character +03:17:30.374 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 +03:17:30.375 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' +03:17:30.375 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' +03:17:30.376 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 +03:17:30.377 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' +03:17:30.378 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' +03:17:30.380 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 +03:17:30.380 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' +03:17:30.380 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer +03:17:30.381 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 +03:17:30.381 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' +03:17:30.382 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' +03:17:30.382 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 +03:17:30.383 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' +03:17:30.383 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' +03:17:30.385 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Setting default value: 0.0 +03:17:30.386 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Converting 'BigDecimal' value '0.0' to type 'BigDecimal' +03:17:30.387 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - No conversion required, value is already a BigDecimal +03:17:30.390 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Setting default value: 0 +03:17:30.391 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Converting 'BigInteger' value '0' to type 'BigInteger' +03:17:30.391 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - No conversion required, value is already a BigInteger +03:17:30.391 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false +03:17:30.391 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' +03:17:30.391 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean +03:17:30.392 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 +03:17:30.392 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' +03:17:30.392 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' +03:17:30.392 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: +03:17:30.393 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' +03:17:30.393 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character +03:17:30.393 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 +03:17:30.394 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' +03:17:30.398 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' +03:17:30.398 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 +03:17:30.398 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' +03:17:30.402 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' +03:17:30.402 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 +03:17:30.402 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' +03:17:30.402 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer +03:17:30.402 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 +03:17:30.402 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' +03:17:30.403 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' +03:17:30.403 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 +03:17:30.403 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' +03:17:30.403 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' +03:17:30.404 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Setting default value: +03:17:30.404 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '' to type 'String' +03:17:30.409 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Z@1efee8e7 +03:17:30.409 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'boolean[]' value '[Z@1efee8e7' to type 'boolean[]' +03:17:30.409 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a boolean[] +03:17:30.409 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [B@1ee807c6 +03:17:30.409 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'byte[]' value '[B@1ee807c6' to type 'byte[]' +03:17:30.410 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a byte[] +03:17:30.410 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [C@76a4d6c +03:17:30.410 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'char[]' value '[C@76a4d6c' to type 'char[]' +03:17:30.414 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a char[] +03:17:30.414 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [D@517cd4b +03:17:30.414 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'double[]' value '[D@517cd4b' to type 'double[]' +03:17:30.414 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a double[] +03:17:30.414 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [F@6cc7b4de +03:17:30.414 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'float[]' value '[F@6cc7b4de' to type 'float[]' +03:17:30.414 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a float[] +03:17:30.414 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [I@32cf48b7 +03:17:30.414 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'int[]' value '[I@32cf48b7' to type 'int[]' +03:17:30.414 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a int[] +03:17:30.415 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [J@679b62af +03:17:30.415 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'long[]' value '[J@679b62af' to type 'long[]' +03:17:30.415 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a long[] +03:17:30.415 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [S@5cdd8682 +03:17:30.415 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'short[]' value '[S@5cdd8682' to type 'short[]' +03:17:30.415 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a short[] +03:17:30.416 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigDecimal;@d6da883 +03:17:30.416 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigDecimal[]' value '[Ljava.math.BigDecimal;@d6da883' to type 'BigDecimal[]' +03:17:30.416 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigDecimal[] +03:17:30.416 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigInteger;@799d4f69 +03:17:30.416 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigInteger[]' value '[Ljava.math.BigInteger;@799d4f69' to type 'BigInteger[]' +03:17:30.416 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigInteger[] +03:17:30.417 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Boolean;@290dbf45 +03:17:30.417 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Boolean[]' value '[Ljava.lang.Boolean;@290dbf45' to type 'Boolean[]' +03:17:30.417 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Boolean[] +03:17:30.417 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Byte;@17776a8 +03:17:30.417 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Byte[]' value '[Ljava.lang.Byte;@17776a8' to type 'Byte[]' +03:17:30.417 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Byte[] +03:17:30.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Character;@69a10787 +03:17:30.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Character[]' value '[Ljava.lang.Character;@69a10787' to type 'Character[]' +03:17:30.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Character[] +03:17:30.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Double;@2d127a61 +03:17:30.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Double[]' value '[Ljava.lang.Double;@2d127a61' to type 'Double[]' +03:17:30.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Double[] +03:17:30.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Float;@11c20519 +03:17:30.418 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Float[]' value '[Ljava.lang.Float;@11c20519' to type 'Float[]' +03:17:30.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Float[] +03:17:30.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Integer;@4e41089d +03:17:30.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Integer[]' value '[Ljava.lang.Integer;@4e41089d' to type 'Integer[]' +03:17:30.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Integer[] +03:17:30.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Long;@32a068d1 +03:17:30.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Long[]' value '[Ljava.lang.Long;@32a068d1' to type 'Long[]' +03:17:30.419 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Long[] +03:17:30.420 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Short;@33cb5951 +03:17:30.420 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Short[]' value '[Ljava.lang.Short;@33cb5951' to type 'Short[]' +03:17:30.420 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Short[] +03:17:30.420 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.String;@365c30cc +03:17:30.420 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'String[]' value '[Ljava.lang.String;@365c30cc' to type 'String[]' +03:17:30.420 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a String[] +03:17:30.421 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Class;@701fc37a +03:17:30.421 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Class[]' value '[Ljava.lang.Class;@701fc37a' to type 'Class[]' +03:17:30.421 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Class[] +03:17:30.421 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Date;@4148db48 +03:17:30.421 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Date[]' value '[Ljava.util.Date;@4148db48' to type 'Date[]' +03:17:30.421 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Date[] +03:17:30.423 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Calendar;@7fad8c79 +03:17:30.423 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Calendar[]' value '[Ljava.util.Calendar;@7fad8c79' to type 'Calendar[]' +03:17:30.424 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Calendar[] +03:17:30.424 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.io.File;@76329302 +03:17:30.424 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.io.File[]' value '[Ljava.io.File;@76329302' to type 'java.io.File[]' +03:17:30.424 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.io.File[] +03:17:30.424 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Date;@4df828d7 +03:17:30.424 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Date[]' value '[Ljava.sql.Date;@4df828d7' to type 'java.sql.Date[]' +03:17:30.424 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Date[] +03:17:30.425 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Time;@62fdb4a6 +03:17:30.425 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Time[]' value '[Ljava.sql.Time;@62fdb4a6' to type 'java.sql.Time[]' +03:17:30.425 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Time[] +03:17:30.425 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Timestamp;@1dd02175 +03:17:30.425 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Timestamp[]' value '[Ljava.sql.Timestamp;@1dd02175' to type 'java.sql.Timestamp[]' +03:17:30.425 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Timestamp[] +03:17:30.425 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.net.URL;@3e77a1ed +03:17:30.426 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.net.URL[]' value '[Ljava.net.URL;@3e77a1ed' to type 'java.net.URL[]' +03:17:30.426 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.net.URL[] +03:17:30.472 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' +03:17:30.475 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' +03:17:30.475 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.475 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' +03:17:30.477 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' +03:17:30.477 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' +03:17:30.478 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' +03:17:30.478 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' +03:17:30.478 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.478 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' +03:17:30.480 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' +03:17:30.482 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' +03:17:30.482 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.482 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' +03:17:30.482 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' +03:17:30.482 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' +03:17:30.483 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' +03:17:30.483 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' +03:17:30.483 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.483 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' +03:17:30.483 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '8.367' to class 'double' +03:17:30.483 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '8.367' to type 'Double' +03:17:30.483 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.484 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '8.367' +03:17:30.484 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3bf' to class 'java.lang.String' +03:17:30.484 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '3bf' to type 'String' +03:17:30.493 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '567' to class 'int' +03:17:30.494 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '567' to type 'Integer' +03:17:30.494 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.494 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '567' +03:17:30.502 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean +03:17:30.505 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +03:17:30.505 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +03:17:30.505 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.505 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +03:17:30.506 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +03:17:30.506 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +03:17:30.506 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.506 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +03:17:30.506 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean +03:17:30.507 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +03:17:30.507 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +03:17:30.507 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.508 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +03:17:30.510 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +03:17:30.510 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +03:17:30.510 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.510 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +03:17:30.510 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +03:17:30.511 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +03:17:30.511 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.511 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +03:17:30.514 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'int[]' +03:17:30.515 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +03:17:30.516 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.516 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +03:17:30.516 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +03:17:30.517 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.518 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +03:17:30.518 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '30' to type 'Integer' +03:17:30.518 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.518 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '30' +03:17:30.518 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'double[]' +03:17:30.518 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' +03:17:30.518 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.518 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' +03:17:30.519 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 2.5' to type 'Double' +03:17:30.519 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.519 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.5' +03:17:30.519 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 1.5' to type 'Double' +03:17:30.519 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.519 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '1.5' +03:17:30.519 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'java.lang.String[]' +03:17:30.519 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' +03:17:30.519 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field3b' to type 'String' +03:17:30.519 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field 3c' to type 'String' +03:17:30.520 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'int[]' +03:17:30.521 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +03:17:30.522 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.522 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +03:17:30.523 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'double[]' +03:17:30.523 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' +03:17:30.523 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.523 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' +03:17:30.523 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'java.lang.String[]' +03:17:30.523 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' +03:17:30.526 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +03:17:30.527 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +03:17:30.527 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.527 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +03:17:30.527 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +03:17:30.527 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +03:17:30.528 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.528 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +03:17:30.529 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +03:17:30.530 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +03:17:30.530 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.530 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +03:17:30.530 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +03:17:30.530 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +03:17:30.530 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.531 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +03:17:30.531 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +03:17:30.531 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +03:17:30.531 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.531 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +03:17:30.532 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +03:17:30.532 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +03:17:30.532 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.532 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +03:17:30.532 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3.5' to class 'double' +03:17:30.532 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' +03:17:30.532 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.533 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' +03:17:30.533 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'field3' to class 'java.lang.String' +03:17:30.533 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' +03:17:30.533 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +03:17:30.533 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +03:17:30.533 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.533 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +03:17:30.535 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '2.2' to class 'double' +03:17:30.536 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' +03:17:30.536 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.536 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' +03:17:30.536 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'threedefault' to class 'java.lang.String' +03:17:30.536 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' +03:17:30.539 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +03:17:30.539 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +03:17:30.539 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.540 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +03:17:30.540 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +03:17:30.540 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +03:17:30.540 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.540 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +03:17:30.540 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '10' to class 'int' +03:17:30.540 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '10' to type 'Integer' +03:17:30.540 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.540 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '10' +03:17:30.541 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +03:17:30.541 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +03:17:30.541 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.541 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +03:17:30.544 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +03:17:30.545 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +03:17:30.545 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.545 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +03:17:30.545 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '20' to class 'int' +03:17:30.545 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '20' to type 'Integer' +03:17:30.545 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.545 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '20' +03:17:30.547 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +03:17:30.547 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +03:17:30.547 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.547 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +03:17:30.547 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +03:17:30.547 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +03:17:30.547 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.547 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +03:17:30.548 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +03:17:30.548 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +03:17:30.548 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.548 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +03:17:30.548 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +03:17:30.548 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +03:17:30.548 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +03:17:30.548 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +03:17:30.548 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +03:17:30.548 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +03:17:30.549 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +03:17:30.549 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.407 s - in edu.cornell.med.icb.io.TestConditionsParser +[INFO] Running edu.cornell.med.icb.io.TestTSVReader +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.io.TestTSVReader +[INFO] Running edu.cornell.med.icb.io.TestResourceFinder +03:17:30.601 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.614 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.614 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader +03:17:30.615 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.616 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.617 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using system class loader +03:17:30.617 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] as file in filesystem +03:17:30.617 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - ... fo`und url is [file:/tmp/temp-file.txt] +03:17:30.619 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.619 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.619 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader +03:17:30.619 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.621 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.622 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using system class loader +03:17:30.622 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] as file in filesystem +03:17:30.624 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.624 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.624 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using system class loader +03:17:30.625 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.625 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +03:17:30.626 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using system class loader +03:17:30.626 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] as file in filesystem +[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.021 s - in edu.cornell.med.icb.io.TestResourceFinder +[INFO] Running edu.cornell.med.icb.util.TestICBStringNormalizer +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in edu.cornell.med.icb.util.TestICBStringNormalizer +[INFO] Running edu.cornell.med.icb.util.TestICBStringUtils +[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 s - in edu.cornell.med.icb.util.TestICBStringUtils [INFO] Running edu.cornell.med.icb.util.TestICBFilenameUtils [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.util.TestICBFilenameUtils -[INFO] Running edu.cornell.med.icb.util.TestBoundedPriorityQueue -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in edu.cornell.med.icb.util.TestBoundedPriorityQueue -[INFO] Running edu.cornell.med.icb.util.TestICBStringNormalizer -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.util.TestICBStringNormalizer +[INFO] Running edu.cornell.med.icb.util.TestVersionUtils +03:17:30.711 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN +03:17:30.712 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN +03:17:30.715 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: 2.6 +[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.004 s - in edu.cornell.med.icb.util.TestVersionUtils [INFO] Running edu.cornell.med.icb.util.TestRandomAdapter -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in edu.cornell.med.icb.util.TestRandomAdapter -[INFO] Running edu.cornell.med.icb.util.TestICBStringUtils -[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 s - in edu.cornell.med.icb.util.TestICBStringUtils +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 s - in edu.cornell.med.icb.util.TestRandomAdapter +[INFO] Running edu.cornell.med.icb.util.TestBoundedPriorityQueue +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in edu.cornell.med.icb.util.TestBoundedPriorityQueue +[INFO] Running edu.cornell.med.icb.util.TestSimpleChecksum +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.022 s - in edu.cornell.med.icb.util.TestSimpleChecksum +[INFO] Running edu.cornell.med.icb.ip.TestIpAddress +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in edu.cornell.med.icb.ip.TestIpAddress +[INFO] Running edu.cornell.med.icb.ip.TestIpUtils +[WARNING] Tests run: 13, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 0.001 s - in edu.cornell.med.icb.ip.TestIpUtils +[INFO] Running edu.cornell.med.icb.iterators.TestTextFileLineIterator +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.iterators.TestTextFileLineIterator +[INFO] Running edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.059 s - in edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator +[INFO] Running edu.cornell.med.icb.iterators.TestTsvLineIterator +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.iterators.TestTsvLineIterator [INFO] Running edu.cornell.med.icb.cli.TestUseModality (-m|--mode) Mode of execution, one of: mode1 @@ -1985,354 +2368,7 @@ [-h|--help] This message. -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in edu.cornell.med.icb.cli.TestUseModality -[INFO] Running edu.cornell.med.icb.ip.TestIpAddress -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in edu.cornell.med.icb.ip.TestIpAddress -[INFO] Running edu.cornell.med.icb.ip.TestIpUtils -[WARNING] Tests run: 13, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 0.003 s - in edu.cornell.med.icb.ip.TestIpUtils -[INFO] Running edu.cornell.med.icb.identifier.TestIndexedIdentifier -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in edu.cornell.med.icb.identifier.TestIndexedIdentifier -[INFO] Running edu.cornell.med.icb.iterators.TestTsvLineIterator -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in edu.cornell.med.icb.iterators.TestTsvLineIterator -[INFO] Running edu.cornell.med.icb.iterators.TestTextFileLineIterator -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.iterators.TestTextFileLineIterator -[INFO] Running edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.022 s - in edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator -[INFO] Running edu.cornell.med.icb.io.TestResourceFinder -07:33:47.426 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.427 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.427 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader -07:33:47.427 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.428 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.428 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using system class loader -07:33:47.428 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] as file in filesystem -07:33:47.428 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - ... fo`und url is [file:/tmp/temp-file.txt] -07:33:47.429 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.429 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.429 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader -07:33:47.429 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.430 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.430 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using system class loader -07:33:47.430 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] as file in filesystem -07:33:47.430 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.431 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.431 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using system class loader -07:33:47.431 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.431 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -07:33:47.432 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using system class loader -07:33:47.432 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] as file in filesystem -[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.007 s - in edu.cornell.med.icb.io.TestResourceFinder -[INFO] Running edu.cornell.med.icb.io.TestTSVReader -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.io.TestTSVReader -[INFO] Running edu.cornell.med.icb.io.TestConditionsParser -07:33:47.446 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false -07:33:47.447 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' -07:33:47.447 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean -07:33:47.448 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 -07:33:47.448 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' -07:33:47.448 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' -07:33:47.448 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: -07:33:47.449 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' -07:33:47.449 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character -07:33:47.449 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 -07:33:47.449 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' -07:33:47.449 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' -07:33:47.450 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 -07:33:47.450 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' -07:33:47.450 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' -07:33:47.451 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 -07:33:47.451 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' -07:33:47.451 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer -07:33:47.451 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 -07:33:47.451 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' -07:33:47.451 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' -07:33:47.452 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 -07:33:47.452 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' -07:33:47.452 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' -07:33:47.453 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Setting default value: 0.0 -07:33:47.453 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Converting 'BigDecimal' value '0.0' to type 'BigDecimal' -07:33:47.453 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - No conversion required, value is already a BigDecimal -07:33:47.454 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Setting default value: 0 -07:33:47.454 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Converting 'BigInteger' value '0' to type 'BigInteger' -07:33:47.454 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - No conversion required, value is already a BigInteger -07:33:47.454 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false -07:33:47.454 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' -07:33:47.454 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean -07:33:47.454 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 -07:33:47.454 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' -07:33:47.454 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' -07:33:47.454 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer -07:33:47.455 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 -07:33:47.456 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' -07:33:47.456 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' -07:33:47.456 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 -07:33:47.456 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' -07:33:47.456 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' -07:33:47.456 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Setting default value: -07:33:47.456 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '' to type 'String' -07:33:47.460 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Z@161479c6 -07:33:47.460 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'boolean[]' value '[Z@161479c6' to type 'boolean[]' -07:33:47.460 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a boolean[] -07:33:47.460 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [B@4313f5bc -07:33:47.460 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'byte[]' value '[B@4313f5bc' to type 'byte[]' -07:33:47.460 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a byte[] -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [C@7f010382 -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'char[]' value '[C@7f010382' to type 'char[]' -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a char[] -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [D@1e802ef9 -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'double[]' value '[D@1e802ef9' to type 'double[]' -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a double[] -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [F@2b6faea6 -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'float[]' value '[F@2b6faea6' to type 'float[]' -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a float[] -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [I@778d1062 -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'int[]' value '[I@778d1062' to type 'int[]' -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a int[] -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [J@670002 -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'long[]' value '[J@670002' to type 'long[]' -07:33:47.461 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a long[] -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [S@1f0f1111 -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'short[]' value '[S@1f0f1111' to type 'short[]' -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a short[] -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigDecimal;@49c386c8 -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigDecimal[]' value '[Ljava.math.BigDecimal;@49c386c8' to type 'BigDecimal[]' -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigDecimal[] -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigInteger;@6e0dec4a -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigInteger[]' value '[Ljava.math.BigInteger;@6e0dec4a' to type 'BigInteger[]' -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigInteger[] -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Boolean;@5ccddd20 -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Boolean[]' value '[Ljava.lang.Boolean;@5ccddd20' to type 'Boolean[]' -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Boolean[] -07:33:47.462 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Byte;@1f3f4916 -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Byte[]' value '[Ljava.lang.Byte;@1f3f4916' to type 'Byte[]' -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Byte[] -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Character;@794cb805 -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Character[]' value '[Ljava.lang.Character;@794cb805' to type 'Character[]' -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Character[] -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Double;@4b5a5ed1 -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Double[]' value '[Ljava.lang.Double;@4b5a5ed1' to type 'Double[]' -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Double[] -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Float;@3cc2931c -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Float[]' value '[Ljava.lang.Float;@3cc2931c' to type 'Float[]' -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Float[] -07:33:47.463 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Integer;@3967e60c -07:33:47.464 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Integer[]' value '[Ljava.lang.Integer;@3967e60c' to type 'Integer[]' -07:33:47.464 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Integer[] -07:33:47.464 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Long;@60d8c9b7 -07:33:47.464 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Long[]' value '[Ljava.lang.Long;@60d8c9b7' to type 'Long[]' -07:33:47.464 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Long[] -07:33:47.464 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Short;@48aaecc3 -07:33:47.464 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Short[]' value '[Ljava.lang.Short;@48aaecc3' to type 'Short[]' -07:33:47.464 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Short[] -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.String;@7c0c77c7 -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'String[]' value '[Ljava.lang.String;@7c0c77c7' to type 'String[]' -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a String[] -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Class;@7adda9cc -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Class[]' value '[Ljava.lang.Class;@7adda9cc' to type 'Class[]' -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Class[] -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Date;@5cee5251 -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Date[]' value '[Ljava.util.Date;@5cee5251' to type 'Date[]' -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Date[] -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Calendar;@5c909414 -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Calendar[]' value '[Ljava.util.Calendar;@5c909414' to type 'Calendar[]' -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Calendar[] -07:33:47.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.io.File;@65466a6a -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.io.File[]' value '[Ljava.io.File;@65466a6a' to type 'java.io.File[]' -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.io.File[] -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Date;@1534f01b -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Date[]' value '[Ljava.sql.Date;@1534f01b' to type 'java.sql.Date[]' -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Date[] -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Time;@2ea227af -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Time[]' value '[Ljava.sql.Time;@2ea227af' to type 'java.sql.Time[]' -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Time[] -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Timestamp;@363ee3a2 -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Timestamp[]' value '[Ljava.sql.Timestamp;@363ee3a2' to type 'java.sql.Timestamp[]' -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Timestamp[] -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.net.URL;@79b06cab -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.net.URL[]' value '[Ljava.net.URL;@79b06cab' to type 'java.net.URL[]' -07:33:47.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.net.URL[] -07:33:47.482 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' -07:33:47.482 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' -07:33:47.482 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.482 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' -07:33:47.483 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' -07:33:47.483 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' -07:33:47.483 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' -07:33:47.483 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' -07:33:47.483 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.483 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' -07:33:47.484 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' -07:33:47.484 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' -07:33:47.484 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.484 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '8.367' to class 'double' -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '8.367' to type 'Double' -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '8.367' -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3bf' to class 'java.lang.String' -07:33:47.485 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '3bf' to type 'String' -07:33:47.487 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '567' to class 'int' -07:33:47.487 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '567' to type 'Integer' -07:33:47.487 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.487 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '567' -07:33:47.488 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean -07:33:47.489 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -07:33:47.489 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:33:47.489 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.489 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:33:47.489 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -07:33:47.489 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -07:33:47.489 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.489 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -07:33:47.490 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean -07:33:47.490 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -07:33:47.490 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:33:47.490 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.490 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:33:47.490 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -07:33:47.490 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -07:33:47.490 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.491 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -07:33:47.491 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -07:33:47.491 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -07:33:47.491 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.491 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -07:33:47.492 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'int[]' -07:33:47.492 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:33:47.492 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '30' to type 'Integer' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '30' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'double[]' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 2.5' to type 'Double' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.5' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 1.5' to type 'Double' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '1.5' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'java.lang.String[]' -07:33:47.493 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field3b' to type 'String' -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field 3c' to type 'String' -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'int[]' -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'double[]' -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'java.lang.String[]' -07:33:47.494 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' -07:33:47.496 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -07:33:47.497 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:33:47.497 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.497 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:33:47.497 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -07:33:47.497 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -07:33:47.497 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.498 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -07:33:47.498 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -07:33:47.498 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:33:47.498 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.498 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:33:47.499 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -07:33:47.499 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -07:33:47.499 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.499 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -07:33:47.499 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -07:33:47.499 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -07:33:47.499 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.499 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -07:33:47.499 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3.5' to class 'double' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'field3' to class 'java.lang.String' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:33:47.500 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '2.2' to class 'double' -07:33:47.501 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' -07:33:47.501 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.501 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' -07:33:47.501 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'threedefault' to class 'java.lang.String' -07:33:47.501 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '10' to class 'int' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '10' to type 'Integer' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '10' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.502 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:33:47.503 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -07:33:47.503 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -07:33:47.503 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.504 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -07:33:47.504 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '20' to class 'int' -07:33:47.504 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '20' to type 'Integer' -07:33:47.504 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.504 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '20' -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -07:33:47.505 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.506 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -07:33:47.506 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -07:33:47.506 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -07:33:47.506 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -07:33:47.506 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -07:33:47.506 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -07:33:47.506 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -07:33:47.506 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -07:33:47.506 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.067 s - in edu.cornell.med.icb.io.TestConditionsParser +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.037 s - in edu.cornell.med.icb.cli.TestUseModality [INFO] [INFO] Results: [INFO] @@ -2341,8 +2377,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 10.825 s -[INFO] Finished at: 2025-06-23T07:33:56-12:00 +[INFO] Total time: 12.431 s +[INFO] Finished at: 2024-05-22T03:17:38+14:00 [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=maven @@ -2374,15 +2410,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 0.399 s -[INFO] Finished at: 2025-06-23T07:33:58-12:00 +[INFO] Total time: 1.578 s +[INFO] Finished at: 2024-05-22T03:17:42+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibicb-utils-java --base-directory=/build/reproducible-path/icb-utils-2.0.1\+git20161002.afee1d9 --non-explore Analysing pom.xml... > dpkg --search /usr/share/maven-repo/colt/colt/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/colt/colt -Jun 23, 2025 7:34:04 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +May 22, 2024 3:17:50 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/pom.xml: Dependency not found colt:colt:jar:debian ERROR: pom.xml: dependency is not packaged in the Maven repository for Debian: colt:colt:debian @@ -2418,12 +2454,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1196183/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1196183/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/763265 and its subdirectories -I: Current time: Mon Jun 23 07:34:09 -12 2025 -I: pbuilder-time-stamp: 1750707249 +I: removing directory /srv/workspace/pbuilder/1196183 and its subdirectories +I: Current time: Wed May 22 03:17:59 +14 2024 +I: pbuilder-time-stamp: 1716297479