Diff of the two buildlogs: -- --- b1/build.log 2024-05-29 08:21:22.683544973 +0000 +++ b2/build.log 2024-05-29 08:38:19.120221804 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 1 02:41:39 -12 2025 -I: pbuilder-time-stamp: 1751380899 +I: Current time: Wed May 29 22:21:25 +14 2024 +I: pbuilder-time-stamp: 1716970885 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying avoid_exception_specification.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1494286/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3850754/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 29 08:21 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3850754/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3850754/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='86653bbf090b428e9337d5f44abf78cd' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1494286' - PS1='# ' - PS2='> ' + INVOCATION_ID=a0c3488f6b274bf985855de4b84476aa + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3850754 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Pk1YrGMl/pbuilderrc_A4jz --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Pk1YrGMl/b1 --logfile b1/build.log freecontact_1.0.21-13.1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Pk1YrGMl/pbuilderrc_2tOh --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Pk1YrGMl/b2 --logfile b2/build.log freecontact_1.0.21-13.1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 29 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1494286/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 27 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3850754/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -207,7 +239,7 @@ Get: 72 http://deb.debian.org/debian unstable/main amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3 [886 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxerces-c-dev amd64 3.2.4+debian-1.3 [1696 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 xsdcxx amd64 4.0.0-9+b1 [1905 kB] -Fetched 121 MB in 5s (25.9 MB/s) +Fetched 121 MB in 2s (50.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19716 files and directories currently installed.) @@ -524,7 +556,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../freecontact_1.0.21-13.1_source.changes +I: user script /srv/workspace/pbuilder/3850754/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3850754/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../freecontact_1.0.21-13.1_source.changes dpkg-buildpackage: info: source package freecontact dpkg-buildpackage: info: source version 1.0.21-13.1 dpkg-buildpackage: info: source distribution unstable @@ -728,7 +764,7 @@ checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown -checking for x86 cpuid 0x00000001 output... 306c1:21020800:fffa3223:178bfbff +checking for x86 cpuid 0x00000001 output... 600f12:11000800:9eb82203:78bfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes @@ -911,7 +947,7 @@ checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown -checking for x86 cpuid 0x00000001 output... 306c1:f020800:fffa3223:178bfbff +checking for x86 cpuid 0x00000001 output... 600f12:11000800:9eb82203:78bfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes @@ -1109,16 +1145,16 @@ make[2]: Leaving directory '/build/reproducible-path/freecontact-1.0.21/lib' make[1]: Leaving directory '/build/reproducible-path/freecontact-1.0.21' dh_auto_build - make -j42 + make -j20 make[1]: Entering directory '/build/reproducible-path/freecontact-1.0.21' Making all in lib make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' make all-am make[3]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp -/bin/bash ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 -libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c glassofast-real.f90 -fPIC -o .libs/libfreecontact_la-glassofast-real.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp +/bin/sh ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c freecontact.cpp -fPIC -DPIC -o .libs/libfreecontact_la-freecontact.o +libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c glassofast-real.f90 -fPIC -o .libs/libfreecontact_la-glassofast-real.o f951: Warning: '-Werror=' argument '-funroll-completely-grow-size' is not valid for Fortran cc1plus: warning: '-Werror=' argument '-funroll-completely-grow-size' is not valid for C++ libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c glassofast-real.f90 -o libfreecontact_la-glassofast-real.o >/dev/null 2>&1 @@ -1156,7 +1192,7 @@ 995 | if(__timing) (*__timing)["all"] = t_diff.tv_sec+t_diff.tv_usec/1e6; if(dbg) fprintf(stderr, "all done in %g secs\n", t_diff.tv_sec+t_diff.tv_usec/1e6); } | ^~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c freecontact.cpp -o libfreecontact_la-freecontact.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/x86_64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/x86_64-linux-gnu/13 -L/usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/13/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/13/../../.. -lgfortran -lm -lquadmath -lblas -llapack +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -fomit-frame-pointer -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funroll-loops -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/x86_64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/x86_64-linux-gnu/13 -L/usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/13/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/13/../../.. -lgfortran -lm -lquadmath -lblas -llapack libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/13/crtbeginS.o .libs/libfreecontact_la-freecontact.o .libs/libfreecontact_la-glassofast-real.o -lrt -L/usr/lib/gcc/x86_64-linux-gnu/13 -L/usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/13/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/13/../../.. -lgfortran -lquadmath -lblas -llapack -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/13/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/crtn.o -fopenmp -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -pthread -Wl,-soname -Wl,libfreecontact.so.0 -o .libs/libfreecontact.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfreecontact.so.0" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so.0") libtool: link: (cd ".libs" && rm -f "libfreecontact.so" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so") @@ -1201,16 +1237,17 @@ --hxx-suffix _xsd.hxx --cxx-suffix _xsd.cxx \ freecontact_output.xsd g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o freecontact-BioXSD-1.1_xsd.o `test -f 'BioXSD-1.1_xsd.cxx' || echo './'`BioXSD-1.1_xsd.cxx -g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o freecontact-freecontact_output_xsd.o `test -f 'freecontact_output_xsd.cxx' || echo './'`freecontact_output_xsd.cxx -g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o freecontact-_write_bioxsd.o `test -f '_write_bioxsd.cpp' || echo './'`_write_bioxsd.cpp g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o freecontact-freecontact_input_xsd.o `test -f 'freecontact_input_xsd.cxx' || echo './'`freecontact_input_xsd.cxx -In file included from BioXSD-1.1_xsd.cxx:41: +g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o freecontact-_write_bioxsd.o `test -f '_write_bioxsd.cpp' || echo './'`_write_bioxsd.cpp +g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o freecontact-freecontact_output_xsd.o `test -f 'freecontact_output_xsd.cxx' || echo './'`freecontact_output_xsd.cxx +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1507 | sequence (::std::auto_ptr< sequence_type > p); | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/xsd/cxx/tree/elements.hxx:23, - from BioXSD-1.1_xsd.hxx:66: + from freecontact_output_xsd.hxx:66: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -1466,6 +1503,29 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1507 | sequence (::std::auto_ptr< sequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/13/memory:78, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1585 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1665 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7203 | frame (::std::auto_ptr< frame_type > p); | ^~~~~~~~ @@ -1484,18 +1544,48 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1741 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1817 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1893 | translationData (::std::auto_ptr< translationData_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7901 | predicted (::std::auto_ptr< predicted_type > p); | ^~~~~~~~ @@ -1508,6 +1598,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8130 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ @@ -1532,55 +1625,47 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1507 | sequence (::std::auto_ptr< sequence_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8602 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/13/memory:78, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66: +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8818 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8602 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1585 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1665 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1741 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8818 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1817 | note (::std::auto_ptr< note_type > p); +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2611 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -1591,24 +1676,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1893 | translationData (::std::auto_ptr< translationData_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9113 | verdict (::std::auto_ptr< verdict_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9189 | reliability (::std::auto_ptr< reliability_type > p); | ^~~~~~~~ @@ -1621,12 +1694,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9566 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ @@ -1639,30 +1706,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9718 | unit (::std::auto_ptr< unit_type > p); | ^~~~~~~~ @@ -1675,12 +1718,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2611 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9974 | position (::std::auto_ptr< position_type > p); | ^~~~~~~~ @@ -1708,12 +1745,12 @@ BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 10285 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3109 | len (::std::auto_ptr< len_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3109 | len (::std::auto_ptr< len_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -1729,20 +1766,32 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10679 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10755 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3287 | min (::std::auto_ptr< min_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3366 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10813 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10679 | pos (::std::auto_ptr< pos_type > p); +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3366 | max (::std::auto_ptr< max_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -1759,39 +1808,15 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10755 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10813 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3877 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11072 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3935 | bases (::std::auto_ptr< bases_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -1807,42 +1832,18 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11465 | min (::std::auto_ptr< min_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11544 | max (::std::auto_ptr< max_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11620 | strand (::std::auto_ptr< strand_type > p); | ^~~~~~~~ @@ -1861,80 +1862,15 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4414 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12003 | max (::std::auto_ptr< max_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4566 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12061 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1507 | sequence (::std::auto_ptr< sequence_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/c++/13/memory:78, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4796 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1585 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1665 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1741 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -1944,54 +1880,36 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1817 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1893 | translationData (::std::auto_ptr< translationData_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3877 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12669 | samePoint (::std::auto_ptr< samePoint_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3935 | bases (::std::auto_ptr< bases_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12745 | samePartition (::std::auto_ptr< samePartition_type > p); | ^~~~~~~~ @@ -2010,81 +1928,57 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13211 | insertion (::std::auto_ptr< insertion_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5589 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; +BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2611 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5798 | className (::std::auto_ptr< className_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13597 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5938 | properties (::std::auto_ptr< properties_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4414 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3051 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13597 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3109 | len (::std::auto_ptr< len_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2094,66 +1988,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13908 | phase (::std::auto_ptr< phase_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3287 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3366 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6385 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3442 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14226 | dbName (::std::auto_ptr< dbName_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14304 | dbUri (::std::auto_ptr< dbUri_type > p); | ^~~~~~~~ @@ -2163,30 +2015,12 @@ BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14511 | wsdl (::std::auto_ptr< wsdl_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6703 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2196,27 +2030,15 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3877 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4566 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2226,9 +2048,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3935 | bases (::std::auto_ptr< bases_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2238,45 +2060,21 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7203 | frame (::std::auto_ptr< frame_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7279 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4796 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2286,72 +2084,30 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4414 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7419 | alignment (::std::auto_ptr< alignment_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15151 | entryUri (::std::auto_ptr< entryUri_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4566 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15305 | date (::std::auto_ptr< date_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4796 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); | ^~~~~~~~ @@ -2364,12 +2120,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15870 | accession (::std::auto_ptr< accession_type > p); | ^~~~~~~~ @@ -2385,18 +2135,6 @@ BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16028 | term (::std::auto_ptr< term_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2406,21 +2144,15 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7901 | predicted (::std::auto_ptr< predicted_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7977 | experimental (::std::auto_ptr< experimental_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2442,24 +2174,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8130 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8217 | MethodResult (::std::auto_ptr< method_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); | ^~~~~~~~ @@ -2469,24 +2189,6 @@ BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16845 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8444 | Result (::std::auto_ptr< methodIdRef_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8602 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2496,12 +2198,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17206 | uri (::std::auto_ptr< uri_type > p); | ^~~~~~~~ @@ -2514,24 +2210,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8818 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17358 | date (::std::auto_ptr< date_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5589 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17434 | wsdl (::std::auto_ptr< wsdl_type > p); | ^~~~~~~~ @@ -2556,45 +2240,27 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8973 | dataReference (::std::auto_ptr< dataReference_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9113 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5798 | className (::std::auto_ptr< className_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9189 | reliability (::std::auto_ptr< reliability_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5589 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5798 | className (::std::auto_ptr< className_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2610,33 +2276,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9566 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 6385 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9642 | index (::std::auto_ptr< index_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9718 | unit (::std::auto_ptr< unit_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9794 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2670,39 +2312,21 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9974 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10032 | value (::std::auto_ptr< value_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7203 | frame (::std::auto_ptr< frame_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7279 | phase (::std::auto_ptr< phase_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10285 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2712,32 +2336,38 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10361 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10419 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23645 | missing (::std::auto_ptr< missing_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10679 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23787 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10755 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10813 | certainty (::std::auto_ptr< certainty_type > p); +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24042 | alignment (::std::auto_ptr< alignedSequence_type >); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -2748,68 +2378,92 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11072 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11148 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11206 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24428 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7901 | predicted (::std::auto_ptr< predicted_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11465 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24580 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7977 | experimental (::std::auto_ptr< experimental_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11544 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11620 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24810 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24970 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25133 | annotation (::std::auto_ptr< feature_type >); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7901 | predicted (::std::auto_ptr< predicted_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7977 | experimental (::std::auto_ptr< experimental_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -2826,15 +2480,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12003 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2850,14 +2498,20 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25932 | code (::std::auto_ptr< code_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8602 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12377 | insertion (::std::auto_ptr< insertion_type > p); +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -2868,81 +2522,151 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26253 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8818 | verdict (::std::auto_ptr< verdict_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26781 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26857 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26933 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12669 | samePoint (::std::auto_ptr< samePoint_type > p); +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27009 | scoreType (::std::auto_ptr< scoreType_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12745 | samePartition (::std::auto_ptr< samePartition_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8973 | dataReference (::std::auto_ptr< dataReference_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12821 | outside (::std::auto_ptr< outside_type > p); +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27164 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from BioXSD-1.1_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1507 | sequence (::std::auto_ptr< sequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/13/memory:78, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from BioXSD-1.1_xsd.hxx:66: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9113 | verdict (::std::auto_ptr< verdict_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1585 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27316 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9189 | reliability (::std::auto_ptr< reliability_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1665 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13071 | correspondance (::std::auto_ptr< correspondance_type > p); +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1741 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1817 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13211 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27468 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1893 | translationData (::std::auto_ptr< translationData_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27620 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27773 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -2952,69 +2676,75 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9642 | index (::std::auto_ptr< index_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9718 | unit (::std::auto_ptr< unit_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9794 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23645 | missing (::std::auto_ptr< missing_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2611 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23787 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9718 | unit (::std::auto_ptr< unit_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9794 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28088 | annotation1 (::std::auto_ptr< feature_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24042 | alignment (::std::auto_ptr< alignedSequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3051 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13597 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3109 | len (::std::auto_ptr< len_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3024,32 +2754,38 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10032 | value (::std::auto_ptr< value_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3287 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10032 | value (::std::auto_ptr< value_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3366 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3442 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); +BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -3060,168 +2796,186 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13908 | phase (::std::auto_ptr< phase_type > p); +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3877 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10285 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3935 | bases (::std::auto_ptr< bases_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24428 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28471 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10361 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24580 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10419 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28623 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10285 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28775 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10361 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24810 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14226 | dbName (::std::auto_ptr< dbName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28927 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10419 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14304 | dbUri (::std::auto_ptr< dbUri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24970 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4414 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14511 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10679 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4566 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10755 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10813 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4796 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25133 | annotation (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10679 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10755 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15075 | accession (::std::auto_ptr< accession_type > p); +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10813 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11072 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ @@ -3234,39 +2988,39 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15151 | entryUri (::std::auto_ptr< entryUri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5589 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11206 | certainty (::std::auto_ptr< certainty_type > p); +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5798 | className (::std::auto_ptr< className_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5938 | properties (::std::auto_ptr< properties_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15305 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11206 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11465 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11465 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3276,15 +3030,33 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11620 | strand (::std::auto_ptr< strand_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6385 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6703 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3294,15 +3066,27 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3312,99 +3096,153 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15870 | accession (::std::auto_ptr< accession_type > p); +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); - | ^~~~~~~~ +freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16028 | term (::std::auto_ptr< term_type > p); - | ^~~~~~~~ +freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16207 | speciesName (::std::auto_ptr< speciesName_type > p); - | ^~~~~~~~ +freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12377 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ +freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); - | ^~~~~~~~ +freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7203 | frame (::std::auto_ptr< frame_type > p); + | ^~~~~~~~ +freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); +freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7279 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7419 | alignment (::std::auto_ptr< alignment_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16538 | supersequence (::std::auto_ptr< supersequence_type > p); +BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12669 | samePoint (::std::auto_ptr< samePoint_type > p); +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12377 | insertion (::std::auto_ptr< insertion_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7901 | predicted (::std::auto_ptr< predicted_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25932 | code (::std::auto_ptr< code_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7977 | experimental (::std::auto_ptr< experimental_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12669 | samePoint (::std::auto_ptr< samePoint_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3414,50 +3252,62 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12821 | outside (::std::auto_ptr< outside_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8130 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16845 | variantNote (::std::auto_ptr< variantNote_type > p); +BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8217 | MethodResult (::std::auto_ptr< method_type >); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12821 | outside (::std::auto_ptr< outside_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8444 | Result (::std::auto_ptr< methodIdRef_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26253 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8602 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17130 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17206 | uri (::std::auto_ptr< uri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8818 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17282 | version (::std::auto_ptr< version_type > p); +BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8973 | dataReference (::std::auto_ptr< dataReference_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9113 | verdict (::std::auto_ptr< verdict_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -3465,126 +3315,186 @@ BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13071 | correspondance (::std::auto_ptr< correspondance_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17358 | date (::std::auto_ptr< date_type > p); +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9189 | reliability (::std::auto_ptr< reliability_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13211 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9566 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9642 | index (::std::auto_ptr< index_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26781 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17434 | wsdl (::std::auto_ptr< wsdl_type > p); +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9718 | unit (::std::auto_ptr< unit_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26857 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9794 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); +BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9974 | position (::std::auto_ptr< position_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13211 | insertion (::std::auto_ptr< insertion_type > p); +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10032 | value (::std::auto_ptr< value_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10285 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10361 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10419 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26933 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10679 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10755 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27009 | scoreType (::std::auto_ptr< scoreType_type > p); +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10813 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13597 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11072 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11148 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11206 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27164 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11465 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27316 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11544 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27468 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11620 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13597 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27620 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12003 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27773 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12377 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3597,18 +3507,36 @@ BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12669 | samePoint (::std::auto_ptr< samePoint_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12745 | samePartition (::std::auto_ptr< samePartition_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12821 | outside (::std::auto_ptr< outside_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3618,9 +3546,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28088 | annotation1 (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13071 | correspondance (::std::auto_ptr< correspondance_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3648,75 +3576,105 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13211 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28471 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28623 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13597 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); +BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13908 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28775 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14226 | dbName (::std::auto_ptr< dbName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14304 | dbUri (::std::auto_ptr< dbUri_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28927 | scoreType (::std::auto_ptr< scoreType_type > p); +BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); +BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14511 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3726,21 +3684,27 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15151 | entryUri (::std::auto_ptr< entryUri_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3750,12 +3714,30 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); +BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15075 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15151 | entryUri (::std::auto_ptr< entryUri_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15305 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); | ^~~~~~~~ @@ -3774,12 +3756,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15870 | accession (::std::auto_ptr< accession_type > p); | ^~~~~~~~ @@ -3798,18 +3774,36 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16207 | speciesName (::std::auto_ptr< speciesName_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); | ^~~~~~~~ @@ -3834,21 +3828,45 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15870 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16845 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16028 | term (::std::auto_ptr< term_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16207 | speciesName (::std::auto_ptr< speciesName_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3864,18 +3882,36 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17282 | version (::std::auto_ptr< version_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17358 | date (::std::auto_ptr< date_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16538 | supersequence (::std::auto_ptr< supersequence_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17434 | wsdl (::std::auto_ptr< wsdl_type > p); | ^~~~~~~~ @@ -3897,12 +3933,84 @@ BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16845 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17130 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17206 | uri (::std::auto_ptr< uri_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17282 | version (::std::auto_ptr< version_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17358 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17434 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -3915,12 +4023,24 @@ BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23645 | missing (::std::auto_ptr< missing_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23645 | missing (::std::auto_ptr< missing_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -4002,108 +4122,42 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:110:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 110 | sequence (::std::auto_ptr< sequence_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 24970 | feature (::std::auto_ptr< feature_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:140:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 140 | species (::std::auto_ptr< species_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:170:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 170 | reference (::std::auto_ptr< reference_type > x) - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 25133 | annotation (::std::auto_ptr< feature_type >); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx:68:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 68 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:200:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 200 | name (::std::auto_ptr< name_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:230:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 230 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:260:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 260 | translationData (::std::auto_ptr< translationData_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:290:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 290 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:376:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 376 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 25778 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 25932 | code (::std::auto_ptr< code_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:420:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 420 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:444:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 444 | len (::std::auto_ptr< len_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:478:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 478 | min (::std::auto_ptr< min_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:508:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 508 | max (::std::auto_ptr< max_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); | ^~~~~~~~ @@ -4116,15 +4170,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:538:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 538 | strand (::std::auto_ptr< strand_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const std::string&, xml_schema::flags, const xml_schema::properties&)': +freecontact_output_xsd.cxx:85:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 85 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:562:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 562 | minCertainty (::std::auto_ptr< minCertainty_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:90:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 90 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const std::string&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_output_xsd.cxx:107:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 107 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -4134,9 +4197,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:592:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 592 | maxCertainty (::std::auto_ptr< maxCertainty_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:112:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 112 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -4146,39 +4210,41 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:634:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 634 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26933 | database (::std::auto_ptr< database_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const std::string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_output_xsd.cxx:125:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 125 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 27009 | scoreType (::std::auto_ptr< scoreType_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:658:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 658 | bases (::std::auto_ptr< bases_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:130:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 130 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +freecontact_output_xsd.cxx:143:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 143 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:692:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 692 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx:157:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -4188,15 +4254,27 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.cxx:167:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 167 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 27316 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:722:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 722 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx:181:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 181 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.cxx:196:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 196 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -4206,9 +4284,16 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:752:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 752 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx:207:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 207 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::flags, const xml_schema::properties&)': +freecontact_output_xsd.cxx:220:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 220 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -4218,27 +4303,37 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:782:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 782 | sequenceName (::std::auto_ptr< sequenceName_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:225:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 225 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 27773 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_output_xsd.cxx:238:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 238 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:812:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 812 | species (::std::auto_ptr< species_type > x) - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:243:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 243 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_output_xsd.cxx:256:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 256 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -4248,63 +4343,35 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:842:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 842 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:261:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 261 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23645 | missing (::std::auto_ptr< missing_type > p); +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const xercesc_3_2::DOMDocument&, xml_schema::flags, const xml_schema::properties&)': +freecontact_output_xsd.cxx:271:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 271 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23787 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:872:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 872 | chromosome (::std::auto_ptr< chromosome_type > x) - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28088 | annotation1 (::std::auto_ptr< feature_type >); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:902:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 902 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24042 | alignment (::std::auto_ptr< alignedSequence_type >); - | ^~~~~~~~ +freecontact_output_xsd.cxx:280:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 280 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -4314,69 +4381,33 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:932:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 932 | variantAccession (::std::auto_ptr< variantAccession_type > x) - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28623 | ontology (::std::auto_ptr< ontology_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28775 | database (::std::auto_ptr< database_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:962:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 962 | variantNote (::std::auto_ptr< variantNote_type > x) - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24428 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -4386,441 +4417,449 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24580 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24810 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:110:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 110 | sequence (::std::auto_ptr< sequence_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1046:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1046 | reversedDirection (::std::auto_ptr< reversedDirection_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:140:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 140 | species (::std::auto_ptr< species_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24970 | feature (::std::auto_ptr< feature_type > p); +BioXSD-1.1_xsd.cxx:170:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 170 | reference (::std::auto_ptr< reference_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:200:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 200 | name (::std::auto_ptr< name_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:230:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 230 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1114:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1114 | name (::std::auto_ptr< name_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:260:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 260 | translationData (::std::auto_ptr< translationData_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25133 | annotation (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +freecontact_output_xsd.cxx:289:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 289 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:290:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 290 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1180:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1180 | className (::std::auto_ptr< className_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:376:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 376 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1228:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1228 | properties (::std::auto_ptr< properties_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: At global scope: +freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 307 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1262 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:420:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 420 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1346:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1346 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const xml_schema::properties&)': +freecontact_output_xsd.cxx:329:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 329 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:444:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 444 | len (::std::auto_ptr< len_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1398:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1398 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > x) - | ^~~~~~~~ +freecontact_output_xsd.cxx:339:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 339 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25932 | code (::std::auto_ptr< code_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:478:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 478 | min (::std::auto_ptr< min_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1428:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1428 | position (::std::auto_ptr< position_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:508:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 508 | max (::std::auto_ptr< max_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26253 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23645 | missing (::std::auto_ptr< missing_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1476:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1476 | occurrenceName (::std::auto_ptr< occurrenceName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:538:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 538 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1506:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1506 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:562:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 562 | minCertainty (::std::auto_ptr< minCertainty_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1536:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1536 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:592:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 592 | maxCertainty (::std::auto_ptr< maxCertainty_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26781 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:634:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 634 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:658:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 658 | bases (::std::auto_ptr< bases_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26857 | ontology (::std::auto_ptr< ontology_type > p); +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23787 | position (::std::auto_ptr< position_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26933 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:692:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 692 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:722:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 722 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27009 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24042 | alignment (::std::auto_ptr< alignedSequence_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:752:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 752 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:782:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 782 | sequenceName (::std::auto_ptr< sequenceName_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:812:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 812 | species (::std::auto_ptr< species_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1602:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1602 | frame (::std::auto_ptr< frame_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:842:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 842 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:872:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 872 | chromosome (::std::auto_ptr< chromosome_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:902:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 902 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27164 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:932:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 932 | variantAccession (::std::auto_ptr< variantAccession_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24428 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27316 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:962:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 962 | variantNote (::std::auto_ptr< variantNote_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1046:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1046 | reversedDirection (::std::auto_ptr< reversedDirection_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1632:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1632 | phase (::std::auto_ptr< phase_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1114:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1114 | name (::std::auto_ptr< name_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27468 | localId (::std::auto_ptr< localId_type > p); +BioXSD-1.1_xsd.cxx:1180:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1180 | className (::std::auto_ptr< className_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27620 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1228:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1228 | properties (::std::auto_ptr< properties_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27773 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1262 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1680:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1680 | alignment (::std::auto_ptr< alignment_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24580 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); +BioXSD-1.1_xsd.cxx:1346:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1346 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1708:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1708 | referenceSequence (::std::auto_ptr< referenceSequence_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28088 | annotation1 (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1398:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1398 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1778 | predicted (::std::auto_ptr< predicted_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24810 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28471 | method (::std::auto_ptr< method_type > p); +BioXSD-1.1_xsd.cxx:1428:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1428 | position (::std::auto_ptr< position_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24970 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28623 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1476:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1476 | occurrenceName (::std::auto_ptr< occurrenceName_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1808:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1808 | experimental (::std::auto_ptr< experimental_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1506:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1506 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1536:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1536 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28775 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1602:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1602 | frame (::std::auto_ptr< frame_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1632:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1632 | phase (::std::auto_ptr< phase_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28927 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1680:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1680 | alignment (::std::auto_ptr< alignment_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1708:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1708 | referenceSequence (::std::auto_ptr< referenceSequence_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1836:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1836 | method (::std::auto_ptr< method_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25133 | annotation (::std::auto_ptr< feature_type >); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); +BioXSD-1.1_xsd.cxx:1778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1778 | predicted (::std::auto_ptr< predicted_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1882 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1808:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1808 | experimental (::std::auto_ptr< experimental_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1836:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1836 | method (::std::auto_ptr< method_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1934:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1934 | method (::std::auto_ptr< method_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1882 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1934:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1934 | method (::std::auto_ptr< method_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -4890,129 +4929,33 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 723 | flat (::std::auto_ptr< flat_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2384:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2384 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) | ^~~~~~~~ -freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 746 | FcAlignment (::std::auto_ptr< flat_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2418:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2418 | pos (::std::auto_ptr< pos_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2448:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2448 | strand (::std::auto_ptr< strand_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 881 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 931 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 973 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 996 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1013 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2472:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2472 | certainty (::std::auto_ptr< certainty_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1029 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1047 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1061 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:2516:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2516 | pos (::std::auto_ptr< pos_type > x) | ^~~~~~~~ -freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -5094,6 +5037,30 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25932 | code (::std::auto_ptr< code_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26253 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3004:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3004 | nextPoint (::std::auto_ptr< nextPoint_type > x) | ^~~~~~~~ @@ -5130,12 +5097,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:67:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 67 | flat (::std::auto_ptr< flat_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3210:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3210 | insertion (::std::auto_ptr< insertion_type > x) | ^~~~~~~~ @@ -5154,12 +5115,36 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26781 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26857 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26933 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3348:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3348 | geneticCode (::std::auto_ptr< geneticCode_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27009 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3378:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3378 | phase (::std::auto_ptr< phase_type > x) | ^~~~~~~~ @@ -5208,6 +5193,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27164 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3650:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3650 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) | ^~~~~~~~ @@ -5220,6 +5211,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27316 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27468 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27620 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3710:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3710 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) | ^~~~~~~~ @@ -5250,6 +5259,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27773 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:3868:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3868 | ontologyName (::std::auto_ptr< ontologyName_type > x) | ^~~~~~~~ @@ -5274,12 +5289,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:4016:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4016 | conceptUri (::std::auto_ptr< conceptUri_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4046 | term (::std::auto_ptr< term_type > x) | ^~~~~~~~ @@ -5292,6 +5319,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28088 | annotation1 (::std::auto_ptr< feature_type >); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4110 | speciesNote (::std::auto_ptr< speciesNote_type > x) | ^~~~~~~~ @@ -5358,12 +5391,42 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28471 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28623 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4478 | wsdl (::std::auto_ptr< wsdl_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28775 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4508 | wsdlService (::std::auto_ptr< wsdlService_type > x) | ^~~~~~~~ @@ -5394,87 +5457,63 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:68:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 68 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5311 | relationName (::std::auto_ptr< relationName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const std::string&, xml_schema::flags, const xml_schema::properties&)': -freecontact_output_xsd.cxx:85:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 85 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28927 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:90:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 90 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5439:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5439 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5487:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5487 | missing (::std::auto_ptr< missing_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const std::string&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_output_xsd.cxx:107:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 107 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:112:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 112 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5311 | relationName (::std::auto_ptr< relationName_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5535:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5535 | position (::std::auto_ptr< position_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; +BioXSD-1.1_xsd.cxx:5439:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5439 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > x) | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const std::string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_output_xsd.cxx:125:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 125 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:130:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 130 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:143:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 143 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5487:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5487 | missing (::std::auto_ptr< missing_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:157:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5535:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5535 | position (::std::auto_ptr< position_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -5484,46 +5523,15 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:167:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 167 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx:181:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 181 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5593 | alignedSequence (::std::auto_ptr< alignedSequence_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:196:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 196 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5627:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5627 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) | ^~~~~~~~ -freecontact_output_xsd.cxx:207:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 207 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::flags, const xml_schema::properties&)': -freecontact_output_xsd.cxx:220:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 220 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -5533,66 +5541,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:225:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 225 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_output_xsd.cxx:238:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 238 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5687:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5687 | sequenceName (::std::auto_ptr< sequenceName_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:243:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 243 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5717:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5717 | species (::std::auto_ptr< species_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_output_xsd.cxx:256:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 256 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5747:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5747 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:261:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 261 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const xercesc_3_2::DOMDocument&, xml_schema::flags, const xml_schema::properties&)': -freecontact_output_xsd.cxx:271:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 271 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5777:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5777 | chromosome (::std::auto_ptr< chromosome_type > x) | ^~~~~~~~ @@ -5605,12 +5571,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:280:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 280 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:5837:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5837 | variantAccession (::std::auto_ptr< variantAccession_type > x) | ^~~~~~~~ @@ -5665,19 +5625,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:97:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 97 | FcAlignment (::std::auto_ptr< flat_type > flat) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: In member function 'void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -freecontact_input_xsd.cxx:139:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 139 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6389:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 6389 | ontology (::std::auto_ptr< ontology_type > x) | ^~~~~~~~ @@ -5696,12 +5643,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:289:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 289 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6477:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 6477 | localId (::std::auto_ptr< localId_type > x) | ^~~~~~~~ @@ -5714,16 +5655,21 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: At global scope: -freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 307 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6533:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6533 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 723 | flat (::std::auto_ptr< flat_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 746 | FcAlignment (::std::auto_ptr< flat_type >); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6533:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6533 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -5733,25 +5679,18 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const xml_schema::properties&)': -freecontact_output_xsd.cxx:329:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 329 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.cxx:339:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 339 | ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6589:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 6589 | localId (::std::auto_ptr< localId_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx:6617:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 6617 | feature (::std::auto_ptr< feature_type > x) | ^~~~~~~~ @@ -5764,241 +5703,153 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6707:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6707 | method (::std::auto_ptr< method_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6737:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6737 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6767:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6767 | ontology (::std::auto_ptr< ontology_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6797:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6797 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6827:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6827 | database (::std::auto_ptr< database_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6857:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6857 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6887:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6887 | scoreType (::std::auto_ptr< scoreType_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6917:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6917 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6969:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6969 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7003:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7003 | relationName (::std::auto_ptr< relationName_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7103:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7103 | localIdRef (::std::auto_ptr< localIdRef_type > x) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx:150:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 150 | ::std::auto_ptr< flat_type > r ( - | ^~~~~~~~ +freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:212:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 212 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +BioXSD-1.1_xsd.cxx:6707:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6707 | method (::std::auto_ptr< method_type > x) + | ^~~~~~~~ +freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 881 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:229:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 229 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:234:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 234 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:251:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 251 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:256:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 256 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:269:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 269 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 931 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:274:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 274 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:287:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 287 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 973 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:301:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 301 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 996 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:311:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 311 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6737:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6737 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:325:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 325 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1013 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:340:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 340 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1029 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:351:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 351 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1047 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:364:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1061 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:369:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 369 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:382:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 382 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6767:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6767 | ontology (::std::auto_ptr< ontology_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:387:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 387 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6797:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6797 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:400:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 400 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6827:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6827 | database (::std::auto_ptr< database_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 405 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6857:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6857 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_2::DOMDocument&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:415:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 415 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( +BioXSD-1.1_xsd.cxx:6887:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6887 | scoreType (::std::auto_ptr< scoreType_type > x) | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:424:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 424 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6917:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6917 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:433:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 433 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6969:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6969 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:451:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 451 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7003:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7003 | relationName (::std::auto_ptr< relationName_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:473:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 473 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7103:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7103 | localIdRef (::std::auto_ptr< localIdRef_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:483:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 483 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( - | ^~~~~~~~ +freecontact_input_xsd.cxx:67:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 67 | flat (::std::auto_ptr< flat_type > x) + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -6155,6 +6006,19 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:97:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 97 | FcAlignment (::std::auto_ptr< flat_type > flat) + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In member function 'void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +freecontact_input_xsd.cxx:139:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 139 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::AlignedBiosequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:8924:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8924 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -6174,6 +6038,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx:150:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 150 | ::std::auto_ptr< flat_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:8963:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8963 | ::std::auto_ptr< sequenceRecord_type > r ( | ^~~~~~~~ @@ -6252,6 +6122,13 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:212:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 212 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9148:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9148 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -6324,18 +6201,177 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:229:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 229 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9307:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9307 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:234:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 234 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:9316:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9316 | ::std::auto_ptr< sequenceScore_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:251:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 251 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:256:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 256 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:269:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 269 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:274:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 274 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:287:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 287 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:301:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 301 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:311:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 311 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:325:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 325 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:340:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 340 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:351:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 351 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:364:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:369:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 369 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:382:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 382 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:387:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 387 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:400:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 400 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 405 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_2::DOMDocument&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:415:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 415 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:424:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 424 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:433:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 433 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:451:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 451 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:473:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 473 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:483:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 483 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:9610:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9610 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -6409,134 +6445,532 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from _write_bioxsd.cpp:20: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1507 | sequence (::std::auto_ptr< sequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/13/memory:78, - from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, - from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/boost/format/alt_sstream.hpp:22, - from /usr/include/boost/format/internals.hpp:24, - from /usr/include/boost/format.hpp:38, - from _write_bioxsd.cpp:17: +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureTypeDetails::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:9866:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9866 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1585 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9877:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9877 | ::std::auto_ptr< specificFeatureName_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1665 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9894:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9894 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1741 | name (::std::auto_ptr< name_type > p); +BioXSD-1.1_xsd.cxx:9903:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9903 | ::std::auto_ptr< specificFeatureConcept_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureTypeDetails::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:9866:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9866 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:9919:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9919 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1817 | note (::std::auto_ptr< note_type > p); +BioXSD-1.1_xsd.cxx:9928:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9928 | ::std::auto_ptr< specificFeatureAlias_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9877:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9877 | ::std::auto_ptr< specificFeatureName_type > r ( +BioXSD-1.1_xsd.cxx:9944:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9944 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9953:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9953 | ::std::auto_ptr< databaseEntry_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9969:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9969 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9980:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9980 | ::std::auto_ptr< note_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9894:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9894 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:9998:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9998 | ::std::auto_ptr< association_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1893 | translationData (::std::auto_ptr< translationData_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9903:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9903 | ::std::auto_ptr< specificFeatureConcept_type > r ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureOccurrenceData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10123:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10123 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10134:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10134 | ::std::auto_ptr< appliesToWholeSequence_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10151:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10151 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10162:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10162 | ::std::auto_ptr< position_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10179:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10179 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10188:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10188 | ::std::auto_ptr< occurrenceEntryReference_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10204:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10204 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10215:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10215 | ::std::auto_ptr< occurrenceName_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9919:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9919 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:10232:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10232 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10243:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10243 | ::std::auto_ptr< occurrenceNote_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9928:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9928 | ::std::auto_ptr< specificFeatureAlias_type > r ( +BioXSD-1.1_xsd.cxx:10260:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10260 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10271:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10271 | ::std::auto_ptr< featureTypeDetails_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10288:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10288 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10297:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10297 | ::std::auto_ptr< score_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9944:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9944 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:10313:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10313 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9953:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9953 | ::std::auto_ptr< databaseEntry_type > r ( +BioXSD-1.1_xsd.cxx:10322:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10322 | ::std::auto_ptr< evidence_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9969:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9969 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:10339:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10339 | ::std::auto_ptr< frame_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9980:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9980 | ::std::auto_ptr< note_type > r ( +BioXSD-1.1_xsd.cxx:10352:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10352 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10363:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10363 | ::std::auto_ptr< phase_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10381:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10381 | ::std::auto_ptr< variation_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10392:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10392 | ::std::auto_ptr< alignment_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:10460:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10460 | FeatureRecord (::std::auto_ptr< referenceSequence_type > referenceSequence) + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10509:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10509 | ::std::auto_ptr< referenceSequence_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10523:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10523 | ::std::auto_ptr< annotation_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10534:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10534 | ::std::auto_ptr< blockWithOccurrenceReferences_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Evidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10633:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10633 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10644:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10644 | ::std::auto_ptr< predicted_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10661:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10661 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10672:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10672 | ::std::auto_ptr< experimental_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:10733:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10733 | MethodResult (::std::auto_ptr< method_type > method) + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::MethodResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10779:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10779 | ::std::auto_ptr< method_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10792:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10792 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10801:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10801 | ::std::auto_ptr< score_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:10868:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10868 | Result (::std::auto_ptr< methodIdRef_type > methodIdRef) + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Result::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10913:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10913 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10924:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10924 | ::std::auto_ptr< methodIdRef_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10941:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10941 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10950:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10950 | ::std::auto_ptr< score_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::PredictionResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11060:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11060 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11071:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11071 | ::std::auto_ptr< method_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11088:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11088 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11099:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11099 | ::std::auto_ptr< methodIdRef_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11116:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11116 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11125:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11125 | ::std::auto_ptr< score_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11141:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11141 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11152:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11152 | ::std::auto_ptr< verdict_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:11217:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11217 | ExperimentalEvidence (::std::auto_ptr< dataReference_type > dataReference) + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ExperimentalEvidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11268:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11268 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11279:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11279 | ::std::auto_ptr< dataReference_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11296:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11296 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11305 | ::std::auto_ptr< citation_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11321:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11321 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11332:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11332 | ::std::auto_ptr< verdict_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11349:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11349 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11360:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11360 | ::std::auto_ptr< reliability_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ScoreType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11482:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11482 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11491:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11491 | ::std::auto_ptr< concept_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11507:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11507 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11516:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11516 | ::std::auto_ptr< method_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11532:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11532 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11541:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11541 | ::std::auto_ptr< methodIdRef_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Score::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11679:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11679 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11690:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11690 | ::std::auto_ptr< position_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from _write_bioxsd.cpp:20: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1507 | sequence (::std::auto_ptr< sequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/13/memory:78, + from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, + from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:18, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/boost/format/alt_sstream.hpp:22, + from /usr/include/boost/format/internals.hpp:24, + from /usr/include/boost/format.hpp:38, + from _write_bioxsd.cpp:17: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1585 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1665 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1741 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1817 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1893 | translationData (::std::auto_ptr< translationData_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9998:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9998 | ::std::auto_ptr< association_type > r ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:12613:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12613 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -6547,6 +6981,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12622:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12622 | ::std::auto_ptr< point_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ @@ -6559,142 +6999,147 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2611 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12638:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12638 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3051 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12649:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12649 | ::std::auto_ptr< insertion_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3109 | len (::std::auto_ptr< len_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12666:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12666 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureOccurrenceData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10123:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10123 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:12675:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12675 | ::std::auto_ptr< segment_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12691:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12691 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10134:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10134 | ::std::auto_ptr< appliesToWholeSequence_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2611 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3287 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12702:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12702 | ::std::auto_ptr< nextPoint_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10151:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10151 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:12719:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12719 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3366 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12730:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12730 | ::std::auto_ptr< nextPartition_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10162:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10162 | ::std::auto_ptr< position_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12747:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12747 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3442 | strand (::std::auto_ptr< strand_type > p); +BioXSD-1.1_xsd.cxx:12758:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12758 | ::std::auto_ptr< samePoint_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3051 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10179:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10179 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:12775:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12775 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3109 | len (::std::auto_ptr< len_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10188:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10188 | ::std::auto_ptr< occurrenceEntryReference_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12786:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12786 | ::std::auto_ptr< samePartition_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10204:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10204 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:12803:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12803 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10215:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10215 | ::std::auto_ptr< occurrenceName_type > r ( +BioXSD-1.1_xsd.cxx:12814:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12814 | ::std::auto_ptr< outside_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10232:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10232 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3287 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10243:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10243 | ::std::auto_ptr< occurrenceNote_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3366 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3877 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3442 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10260:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10260 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3935 | bases (::std::auto_ptr< bases_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10271:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10271 | ::std::auto_ptr< featureTypeDetails_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3877 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10288:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10288 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3935 | bases (::std::auto_ptr< bases_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -6704,12 +7149,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10297:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10297 | ::std::auto_ptr< score_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); | ^~~~~~~~ @@ -6728,24 +7167,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10313:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10313 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4414 | species (::std::auto_ptr< species_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10322:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10322 | ::std::auto_ptr< evidence_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); | ^~~~~~~~ @@ -6770,38 +7197,51 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10339:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10339 | ::std::auto_ptr< frame_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4796 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10352:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10352 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralOutsideSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:12970:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12970 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10363:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10363 | ::std::auto_ptr< phase_type > r ( +BioXSD-1.1_xsd.cxx:12981:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12981 | ::std::auto_ptr< correspondance_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10381:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10381 | ::std::auto_ptr< variation_type > r ( +BioXSD-1.1_xsd.cxx:12998:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12998 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10392:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10392 | ::std::auto_ptr< alignment_type > r ( +BioXSD-1.1_xsd.cxx:13007:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13007 | ::std::auto_ptr< point_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13023:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13023 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13034:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13034 | ::std::auto_ptr< insertion_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13051:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13051 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -6812,28 +7252,33 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:10460:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10460 | FeatureRecord (::std::auto_ptr< referenceSequence_type > referenceSequence) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13060:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13060 | ::std::auto_ptr< segment_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10509:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10509 | ::std::auto_ptr< referenceSequence_type > r ( +BioXSD-1.1_xsd.cxx:13076:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13076 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13087:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13087 | ::std::auto_ptr< explicitSequenceReference_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5589 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10523:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10523 | ::std::auto_ptr< annotation_type > r ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneticCode::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:13231:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13231 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -6844,14 +7289,20 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13242:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13242 | ::std::auto_ptr< reference_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5938 | properties (::std::auto_ptr< properties_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10534:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10534 | ::std::auto_ptr< blockWithOccurrenceReferences_type > r ( +BioXSD-1.1_xsd.cxx:13260:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13260 | ::std::auto_ptr< codon_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -6868,9 +7319,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Evidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10633:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10633 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::TranslationData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:13354:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13354 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -6881,8 +7332,8 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10644:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10644 | ::std::auto_ptr< predicted_type > r ( +BioXSD-1.1_xsd.cxx:13365:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13365 | ::std::auto_ptr< geneticCode_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -6893,21 +7344,15 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10661:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10661 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:13382:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13382 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10672:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10672 | ::std::auto_ptr< experimental_type > r ( - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -6917,23 +7362,27 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13393:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13393 | ::std::auto_ptr< phase_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:10733:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10733 | MethodResult (::std::auto_ptr< method_type > method) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13410:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::MethodResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10779:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10779 | ::std::auto_ptr< method_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13421:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13421 | ::std::auto_ptr< reversedTranslationDirection_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -6949,18 +7398,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10792:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10792 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10801:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10801 | ::std::auto_ptr< score_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7419 | alignment (::std::auto_ptr< alignment_type > p); | ^~~~~~~~ @@ -6973,13 +7410,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:10868:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10868 | Result (::std::auto_ptr< methodIdRef_type > methodIdRef) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); | ^~~~~~~~ @@ -6998,19 +7428,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Result::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10913:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10913 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10924:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10924 | ::std::auto_ptr< methodIdRef_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8130 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ @@ -7029,24 +7446,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10941:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10941 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8444 | Result (::std::auto_ptr< methodIdRef_type >); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10950:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10950 | ::std::auto_ptr< score_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8602 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ @@ -7086,55 +7491,6 @@ BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::PredictionResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11060:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11060 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11071:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11071 | ::std::auto_ptr< method_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11088:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11088 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11099:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11099 | ::std::auto_ptr< methodIdRef_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11116:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11116 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11125:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11125 | ::std::auto_ptr< score_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11141:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11141 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11152:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11152 | ::std::auto_ptr< verdict_type > r ( - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -7150,13 +7506,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:11217:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11217 | ExperimentalEvidence (::std::auto_ptr< dataReference_type > dataReference) - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9718 | unit (::std::auto_ptr< unit_type > p); | ^~~~~~~~ @@ -7181,79 +7530,30 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ExperimentalEvidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11268:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11268 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11279:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11279 | ::std::auto_ptr< dataReference_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11296:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11296 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11305 | ::std::auto_ptr< citation_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 10285 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11321:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11321 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 10361 | strand (::std::auto_ptr< strand_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11332:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11332 | ::std::auto_ptr< verdict_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 10419 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11349:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11349 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11360:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11360 | ::std::auto_ptr< reliability_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 10679 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ @@ -7320,64 +7620,64 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ScoreType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11482:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11482 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12003 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11491:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11491 | ::std::auto_ptr< concept_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11507:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11507 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:14184:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14184 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12003 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11516:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11516 | ::std::auto_ptr< method_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14195:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14195 | ::std::auto_ptr< subsequencePosition_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12377 | insertion (::std::auto_ptr< insertion_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11532:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11532 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:14212:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14212 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11541:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11541 | ::std::auto_ptr< methodIdRef_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14223:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14223 | ::std::auto_ptr< supersequence_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12377 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14240:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14240 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14251:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14251 | ::std::auto_ptr< supersequenceName_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -7411,16 +7711,28 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Score::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11679:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11679 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Method::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:14410:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11690:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11690 | ::std::auto_ptr< position_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14419:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14419 | ::std::auto_ptr< categoryConcept_type > r ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14435:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14435 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14444:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14444 | ::std::auto_ptr< citation_type > r ( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -7652,25 +7964,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:12613:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12613 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12622:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12622 | ::std::auto_ptr< point_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12638:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12638 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); | ^~~~~~~~ @@ -7683,24 +7976,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12649:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12649 | ::std::auto_ptr< insertion_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12666:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12666 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); | ^~~~~~~~ @@ -7713,213 +7994,30 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12675:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12675 | ::std::auto_ptr< segment_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12691:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12691 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12702:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12702 | ::std::auto_ptr< nextPoint_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12719:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12719 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12730:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12730 | ::std::auto_ptr< nextPartition_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12747:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12747 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12758:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12758 | ::std::auto_ptr< samePoint_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12775:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12775 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12786:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12786 | ::std::auto_ptr< samePartition_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12803:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12803 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12814:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12814 | ::std::auto_ptr< outside_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralOutsideSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:12970:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12970 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12981:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12981 | ::std::auto_ptr< correspondance_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12998:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12998 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13007:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13007 | ::std::auto_ptr< point_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13023:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13023 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13034:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13034 | ::std::auto_ptr< insertion_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13051:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13051 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13060:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13060 | ::std::auto_ptr< segment_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13076:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13076 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13087:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13087 | ::std::auto_ptr< explicitSequenceReference_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneticCode::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:13231:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13231 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13242:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13242 | ::std::auto_ptr< reference_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13260:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13260 | ::std::auto_ptr< codon_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 22916 | relationName (::std::auto_ptr< relationName_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::TranslationData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:13354:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13354 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13365:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13365 | ::std::auto_ptr< geneticCode_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13382:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13382 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23645 | missing (::std::auto_ptr< missing_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13393:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13393 | ::std::auto_ptr< phase_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23787 | position (::std::auto_ptr< position_type > p); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13410:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13421:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13421 | ::std::auto_ptr< reversedTranslationDirection_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); | ^~~~~~~~ @@ -8064,357 +8162,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27316 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27468 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27620 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27773 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28088 | annotation1 (::std::auto_ptr< feature_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28471 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28623 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28775 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28927 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:14184:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14184 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14195:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14195 | ::std::auto_ptr< subsequencePosition_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14212:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14212 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14223:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14223 | ::std::auto_ptr< supersequence_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14240:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14240 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14251:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14251 | ::std::auto_ptr< supersequenceName_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Method::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:14410:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14419:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14419 | ::std::auto_ptr< categoryConcept_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14435:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14435 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14444:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14444 | ::std::auto_ptr< citation_type > r ( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 723 | flat (::std::auto_ptr< flat_type > p); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 746 | FcAlignment (::std::auto_ptr< flat_type >); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 881 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 931 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 973 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 996 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1013 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1029 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1047 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1061 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:21: -freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:17632:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17632 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -8422,6 +8169,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27316 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:17643:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17643 | ::std::auto_ptr< relationName_type > r ( | ^~~~~~~~ @@ -8488,6 +8241,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27468 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27620 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27773 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::variation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:17927:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17927 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -8501,12 +8272,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:17955:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17955 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:17964:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17964 | ::std::auto_ptr< variant_type > r ( | ^~~~~~~~ @@ -8556,6 +8339,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28088 | annotation1 (::std::auto_ptr< feature_type >); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:18148:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18148 | ::std::auto_ptr< alignmentOfReference_type > r ( @@ -8600,24 +8389,72 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28471 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18348:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18348 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28623 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18359:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18359 | ::std::auto_ptr< sequenceName_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28775 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18376:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18376 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28927 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18387:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18387 | ::std::auto_ptr< species_type > r ( | ^~~~~~~~ @@ -8654,6 +8491,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18471 | ::std::auto_ptr< subsequencePosition_type > r ( | ^~~~~~~~ @@ -8684,6 +8527,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:18590:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18590 | annotation (::std::auto_ptr< feature_type > feature) @@ -8691,6 +8540,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::annotation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:18638:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18638 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -8735,21 +8590,117 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 723 | flat (::std::auto_ptr< flat_type > p); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 746 | FcAlignment (::std::auto_ptr< flat_type >); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18823:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18823 | ::std::auto_ptr< semanticConcept_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18834:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18834 | ::std::auto_ptr< method_type > r ( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 881 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 931 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 973 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 996 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1013 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1029 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:18845:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18845 | ::std::auto_ptr< scoreType_type > r ( | ^~~~~~~~ +freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1047 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:1061:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1061 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -8759,6 +8710,91 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from _write_bioxsd.cpp:21: +freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignmentOfReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:19177:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 19177 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -9049,6 +9085,37 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from freecontact.cpp:25: +../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] + 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> + | ^ +../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': +../lib/freecontact.h:80:79: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] + 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) + | ^ +freecontact.cpp: In function 'int main(int, char**)': +freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 165 | auto_ptr ali_ifs_p; + | ^~~~~~~~ +In file included from /usr/include/c++/13/memory:78, + from /usr/include/boost/function/function_base.hpp:33, + from /usr/include/boost/function/detail/prologue.hpp:18, + from /usr/include/boost/function/function_template.hpp:13, + from /usr/include/boost/function/detail/maybe_include.hpp:22, + from /usr/include/boost/function/function1.hpp:11, + from /usr/include/boost/program_options/value_semantic.hpp:13, + from /usr/include/boost/program_options/options_description.hpp:13, + from /usr/include/boost/program_options.hpp:15, + from freecontact.cpp:17: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 169 | ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from _write_bioxsd.cpp:22: ../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> @@ -9242,38 +9309,7 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h:69:54: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] - 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> - | ^ -../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': -../lib/freecontact.h:80:79: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] - 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) - | ^ -freecontact.cpp: In function 'int main(int, char**)': -freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 165 | auto_ptr ali_ifs_p; - | ^~~~~~~~ -In file included from /usr/include/c++/13/memory:78, - from /usr/include/boost/function/function_base.hpp:33, - from /usr/include/boost/function/detail/prologue.hpp:18, - from /usr/include/boost/function/function_template.hpp:13, - from /usr/include/boost/function/detail/maybe_include.hpp:22, - from /usr/include/boost/function/function1.hpp:11, - from /usr/include/boost/program_options/value_semantic.hpp:13, - from /usr/include/boost/program_options/options_description.hpp:13, - from /usr/include/boost/program_options.hpp:15, - from freecontact.cpp:17: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 169 | ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la libtool: link: g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -L/usr/lib -lboost_program_options -lxerces-c ../lib/.libs/libfreecontact.so -pthread -fopenmp make[2]: Leaving directory '/build/reproducible-path/freecontact-1.0.21/src' make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21' @@ -9281,7 +9317,7 @@ make[2]: Leaving directory '/build/reproducible-path/freecontact-1.0.21' make[1]: Leaving directory '/build/reproducible-path/freecontact-1.0.21' dh_auto_test - make -j42 check "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1 + make -j20 check "TESTSUITEFLAGS=-j20 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/freecontact-1.0.21' Making check in lib make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' @@ -9323,7 +9359,7 @@ make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' make[3]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' /usr/bin/mkdir -p '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfreecontact.so.0.0.0 /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.so.0.0.0 libtool: install: (cd /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so.0 || { rm -f libfreecontact.so.0 && ln -s libfreecontact.so.0.0.0 libfreecontact.so.0; }; }) libtool: install: (cd /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so || { rm -f libfreecontact.so && ln -s libfreecontact.so.0.0.0 libfreecontact.so; }; }) @@ -9340,7 +9376,7 @@ make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/src' make[3]: Entering directory '/build/reproducible-path/freecontact-1.0.21/src' /usr/bin/mkdir -p '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c freecontact '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c freecontact '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin' libtool: warning: '../lib/libfreecontact.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/freecontact /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin/freecontact /usr/bin/mkdir -p '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/share/doc/freecontact/examples' @@ -9424,12 +9460,12 @@ make[1]: Leaving directory '/build/reproducible-path/freecontact-1.0.21' dh_md5sums dh_builddeb +dpkg-deb: building package 'libfreecontact0t64' in '../libfreecontact0t64_1.0.21-13.1_amd64.deb'. dpkg-deb: building package 'freecontact' in '../freecontact_1.0.21-13.1_amd64.deb'. dpkg-deb: building package 'freecontact-dbgsym' in '../freecontact-dbgsym_1.0.21-13.1_amd64.deb'. -dpkg-deb: building package 'libfreecontact0t64' in '../libfreecontact0t64_1.0.21-13.1_amd64.deb'. -dpkg-deb: building package 'libfreecontact0t64-dbgsym' in '../libfreecontact0t64-dbgsym_1.0.21-13.1_amd64.deb'. -dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-13.1_amd64.deb'. dpkg-deb: building package 'libfreecontact-doc' in '../libfreecontact-doc_1.0.21-13.1_all.deb'. +dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-13.1_amd64.deb'. +dpkg-deb: building package 'libfreecontact0t64-dbgsym' in '../libfreecontact0t64-dbgsym_1.0.21-13.1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../freecontact_1.0.21-13.1_amd64.buildinfo dpkg-genchanges --build=binary -O../freecontact_1.0.21-13.1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -9437,12 +9473,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3850754/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3850754/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1494286 and its subdirectories -I: Current time: Tue Jul 1 02:44:18 -12 2025 -I: pbuilder-time-stamp: 1751381058 +I: removing directory /srv/workspace/pbuilder/3850754 and its subdirectories +I: Current time: Wed May 29 22:38:18 +14 2024 +I: pbuilder-time-stamp: 1716971898