Diff of the two buildlogs: -- --- b1/build.log 2021-07-27 13:18:33.715109441 +0000 +++ b2/build.log 2021-07-27 13:27:35.598689553 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 27 01:10:32 -12 2021 -I: pbuilder-time-stamp: 1627391432 +I: Current time: Wed Jul 28 03:18:46 +14 2021 +I: pbuilder-time-stamp: 1627391926 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./python-csb_1.2.5+dfsg-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.UMwxMDGL/trustedkeys.kbx': General error -gpgv: Signature made Thu Oct 3 00:07:20 2019 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.wiXnl17R/trustedkeys.kbx': General error +gpgv: Signature made Fri Oct 4 02:07:20 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,135 +31,169 @@ dpkg-source: info: applying fix_setup.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3056/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/22066/tmp/hooks/D01_modify_environment starting +debug: Running on virt32b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/22066/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/22066/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='f4c9be3005944c088ba85d0e776b96d7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3056' - PS1='# ' - PS2='> ' + INVOCATION_ID=f6c9e9e79b8c450d96c2f00f6eed67da + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=22066 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.AYc2PfnXq6/pbuilderrc_1haN --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.AYc2PfnXq6/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-5.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.AYc2PfnXq6/pbuilderrc_EEDn --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.AYc2PfnXq6/b2 --logfile b2/build.log --extrapackages usrmerge python-csb_1.2.5+dfsg-5.dsc' + SUDO_GID=112 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux virt64b 5.10.0-8-arm64 #1 SMP Debian 5.10.46-2 (2021-07-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-2 (2021-07-20) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 24 21:25 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/3056/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 28 03:19 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 25 23:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/22066/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -294,7 +328,7 @@ Get: 85 http://deb.debian.org/debian bullseye/main armhf python3-matplotlib armhf 3.3.4-1 [4111 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf python3-scipy armhf 1.6.0-2 [11.3 MB] Get: 87 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] -Fetched 52.0 MB in 6s (8726 kB/s) +Fetched 52.0 MB in 12s (4235 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -665,9 +699,42 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (637 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25433 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-5_source.changes +hostname: Name or service not known +I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-5_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-5 dpkg-buildpackage: info: source distribution unstable @@ -713,145 +780,145 @@ creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb copying csb/build.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb copying csb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test -copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test -copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio copying csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core copying csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech -copying csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech -copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech -copying csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -copying csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps +copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps copying csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io -copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io -copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io -copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech +copying csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech +copying csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech +copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test +copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test +copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric copying csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics -copying csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr +copying csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm +copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm +copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils +copying csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments +copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments +copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence +copying csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence +copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure +copying csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf +copying csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf +copying csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers +copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io +copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech +copying csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech -copying csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io -copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence -copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure -copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm -copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments -copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm +copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment -copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe -copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb -copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck -copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments +copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence +copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure +copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb +copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck +copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans +copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe +copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans -copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans +creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment +copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence -copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence -copying csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr -copying csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure -copying csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm -copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm -copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments -copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments -copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils -copying csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf -copying csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf -copying csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers -copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO @@ -967,136 +1034,10 @@ re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence \S re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? - self.assertFalse(self.enum.C is 66) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence \w "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] -testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> - self.a3m = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> - ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testHMMSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> - ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testInsertionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok -testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok -testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwqy_buyz' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp72lhcqyf' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok -testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxqg3l_zs' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2w829l2d' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok -testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpqg2slxhn' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp36pt4a2b' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok -testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok -testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0nhohazc' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf47olr7x' mode='r' encoding='UTF-8'> - self.assertEqual(open(tmp.name).read().strip(), self.data) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testGaps (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testIdenticals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testIdentity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testIsEmpty (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testQend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testQstart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testQuery (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testSubject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok -testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok -testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok -testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix) ... ok -testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok -testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok -testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? + self.assertFalse(self.enum.C is 66) testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConnectedAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok @@ -1154,149 +1095,25 @@ testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSimpleSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok -testAppendAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) -@see: [CSB 0000122] ... ok -testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) -@see: [CSB 0000030] ... ok -testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) -@see: [CSB 0000029] ... ok -testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) -Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' -testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> - return csb.io.Pickle.load(open(file, 'rb')) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok -testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok -testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok -testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok -testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok -testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) -@todo: more checks are needed here (e.g. append an atom to different residues) ... ok -testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) -@bug: check for overlapping SNs in a Chain ... ok -testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok -testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok -testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testComputeTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testSecStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testTMScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok -testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok -testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok -testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok -testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok -testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) -@todo: more checks are needed here (e.g. append an atom to different residues) ... ok -testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) -@bug: check for overlapping SNs in a Chain ... ok -testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok -testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok -testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok -testFirstModel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok -testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok -testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testHasStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testInsertionCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testIsModified (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testSequenceNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok -testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok -testFirstChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok -testFromChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok -testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok -testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok -testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok -testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpk0m07i3l' mode='r' encoding='UTF-8'> - self.assertEqual(pdbraw, open(tmp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvebkulz3' mode='r' encoding='UTF-8'> - self.assertEqual(pdbraw, open(tmp.name).read()) +testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> + content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok -testConversion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok -testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok -testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok -testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok -testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok -testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok -testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok +testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) +@see: [CSB 0000056] ... ok +testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> + for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok -testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok -testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpo4b2vu_3' mode='r' encoding='UTF-8'> + break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok +testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok +testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) +@see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6ay_y2gp' mode='r' encoding='UTF-8'> + generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCommaSplitting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions) @@ -1376,28 +1193,6 @@ for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok -testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> - content = open(filename).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok -testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) -@see: [CSB 0000056] ... ok -testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> - for line in open(structure_file): -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1fw9657b' mode='r' encoding='UTF-8'> - break -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok -testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok -testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) -@see: [CSB 0000068], [CSB 0000128] ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpj4891u9f' mode='r' encoding='UTF-8'> - generated = open(tmp.name).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok @@ -1419,28 +1214,71 @@ testReadRawHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReconstructHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testWriteDensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok +testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok +testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) +Test creating an empty L{Clans} instance. ... ok +testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok +testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok +testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py:375: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> + data_blocks = open(os.path.expanduser( +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok +testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok +testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok +testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) +Test parsing of a small dummy file with known values ... ok +testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) +Test whether the premature (before parsing) access to clans_instance is ... ok +testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok +testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok +testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser) ... ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp76gvo89s' mode='r' encoding='UTF-8'> +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphci5r2q6' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpud30wpga' mode='r' encoding='UTF-8'> +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6vcfk_sx' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0ys0ejt_' mode='r' encoding='UTF-8'> +testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcq1o66g0' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpjcb4w4ol' mode='r' encoding='UTF-8'> +testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpav_618s0' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpaxi03hy4' mode='r' encoding='UTF-8'> +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp733nvwn3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkw90zltj' mode='r' encoding='UTF-8'> +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplxjlj9iw' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1452,11 +1290,11 @@ testReadJunk (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadNucleicSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadProteinSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok -testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptdfww4sa' mode='r' encoding='UTF-8'> +testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4ydx2153' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8620ks2a' mode='r' encoding='UTF-8'> +testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpytdncfte' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1470,33 +1308,64 @@ testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testMakeAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok testMakeEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok -testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) -Test creating an empty L{Clans} instance. ... ok -testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok -testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok -testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py:375: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> - data_blocks = open(os.path.expanduser( -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok -testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok -testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok -testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) -Test parsing of a small dummy file with known values ... ok -testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansParser) -Test whether the premature (before parsing) access to clans_instance is ... ok -testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok -testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok +testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok +testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok +testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok +testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok +testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/hmm.TestState) ... ok +testRmsdMirrorImage (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) ... ok +testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) +@see: [CSB 0000058] ... ok +testCenterOfMass (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testDeg (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testDistance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testDistanceMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testFindPairs (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testFitWellordered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testInertiaTensor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testRad (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testRadiusOfGyration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testRmsdCur (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testScaleAndFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testSecondMoments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testTmScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testTmSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testTorsionRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testWFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok +testWrmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testAnchoredAround (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackbone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackboneAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok @@ -1529,7 +1398,7 @@ testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testComplement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplr6buezo' mode='r' encoding='UTF-8'> +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmngsts4n' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1573,159 +1442,240 @@ testGetAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testTarget (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testThreshold (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok -testRmsdMirrorImage (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) ... ok -testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.Regressions) -@see: [CSB 0000058] ... ok -testCenterOfMass (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testDeg (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testDistance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testDistanceMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testFindPairs (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testFitWellordered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testInertiaTensor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testRad (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testRadiusOfGyration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testRmsdCur (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testScaleAndFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testSecondMoments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testTmScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testTmSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testTorsionRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testWFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testWrmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDeepCopy) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. - self.assertNotEquals(id(obj), id(copy)) +testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> + self.a3m = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> + ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok -testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestIterable) ... ok -runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestOrderedDict) ... ok -testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok -testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok -testBoltzmann (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok -testComposite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok -testTsallis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0m5d2pgo' mode='r' encoding='UTF-8'> - content = open(self.temp.name).read() +testHMMSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> + ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok -testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok -testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7evpw2lg' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D') +testInsertionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok +testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok +testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmped7jf9_n' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_x0szlpq' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmwc6sdod' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'A/B/C/') +testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok +testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp510_cdux' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmppu5i2rk2' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph_cz7f75' mode='r' encoding='UTF-8'> - self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) +testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok +testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphcsaflp2' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_ffubne9' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok -testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok -testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok -testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok -testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) +testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok +testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok +testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6oorouy0' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpoeqgt8ov' mode='r' encoding='UTF-8'> - self.assertEqual(open(self.tsv).read(), open(dump.name).read()) +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2c3_dnic' mode='r' encoding='UTF-8'> + self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok -testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok -testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_bcasb5p' mode='r' encoding='UTF-8'> - self.assertEqual(data, open(temp.name).read()) +testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testGaps (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testIdenticals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testIdentity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testIsEmpty (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testQend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testQstart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testQuery (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testSubject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok +testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok +testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok +testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix) ... ok +testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok +testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok +testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok +testAppendAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) +@see: [CSB 0000122] ... ok +testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) +@see: [CSB 0000030] ... ok +testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) +@see: [CSB 0000029] ... ok +testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.ChainRegressions) +Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' +testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> + return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok -testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok -testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok -testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok -testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok -testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok -testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok -testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok -testCaching (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... ok -testDiagonalTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' -testUnityMultipleTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' -testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.MathRegressions) -r526 ... ok -testDegree2Radian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok -testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok -testExp (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok -testFromPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok -testLog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok -testPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok -testRadian2Degree (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok -testRotationMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok -testLogTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok -testLogTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok -testSimpson2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok -testTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok -testTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok +testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok +testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok +testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok +testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok +testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok +testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) +@todo: more checks are needed here (e.g. append an atom to different residues) ... ok +testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) +@bug: check for overlapping SNs in a Chain ... ok +testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok +testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok +testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testComputeTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testSecStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testTMScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestChain) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok +testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok +testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok +testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok +testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok +testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) +@todo: more checks are needed here (e.g. append an atom to different residues) ... ok +testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) +@bug: check for overlapping SNs in a Chain ... ok +testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok +testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok +testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok +testFirstModel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok +testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok +testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testHasStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testInsertionCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testIsModified (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testSequenceNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok +testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok +testFirstChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok +testFromChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok +testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok +testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok +testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok +testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmq7z3rlf' mode='r' encoding='UTF-8'> + self.assertEqual(pdbraw, open(tmp.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe7y3bslk' mode='r' encoding='UTF-8'> + self.assertEqual(pdbraw, open(tmp.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok +testConversion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok +testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/ars.TestARS) ... ok +testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok +testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok +testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok +testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' +testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok +testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok +testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testEnsemble (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) The posterior of a gaussian scale mixture with gamma prior ... ok testGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) @@ -1738,19 +1688,6 @@ The posterior of a gaussian scale mixture with gamma prior ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok -testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok -testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok -testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok -testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok -testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok -testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok -testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok @@ -1849,9 +1786,139 @@ testFiveReplicasOffset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testFourReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testTwoReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpae4avchv' mode='r' encoding='UTF-8'> + content = open(self.temp.name).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestDumpLoad) ... ok +testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryReader) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... ok +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_6w0o18e' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp08qpcmjy' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'A/B/C/') +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpc7po1za2' mode='r' encoding='UTF-8'> + self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestMemoryStream) ... ok +testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok +testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok +testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestShell) ... ok +testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpc6ewd9cn' mode='r' encoding='UTF-8'> + self.assertEqual(open(self.tsv).read(), open(dump.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTable) ... ok +testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... ok +testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpeo1lu_6o' mode='r' encoding='UTF-8'> + self.assertEqual(data, open(temp.name).read()) +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok +testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok +testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/io.TestTempFolder) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDeepCopy) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. + self.assertNotEquals(id(obj), id(copy)) +ok +testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok +testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestEnum) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestIterable) ... ok +runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/core.TestOrderedDict) ... ok +testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok +testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok +testBoltzmann (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok +testComposite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok +testTsallis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok +testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok +testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok +testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok +testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok +testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok +testCaching (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... ok +testDiagonalTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' +testUnityMultipleTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' +testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.MathRegressions) +r526 ... ok +testDegree2Radian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok +testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok +testExp (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok +testFromPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok +testLog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok +testPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok +testRadian2Degree (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok +testRotationMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestMath) ... ok +testLogTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok +testLogTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok +testSimpson2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok +testTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok +testTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-9_csb/build/csb/test/cases/numeric.TestNumeric) ... ok ---------------------------------------------------------------------- -Ran 697 tests in 367.257s +Ran 697 tests in 380.595s OK (skipped=6) make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' @@ -1884,411 +1951,411 @@ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9 creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/fasta.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/dssp.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/cs.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/mrc.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/whatif.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/clans.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/procheck.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/noe.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/hhpred.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/ars.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/tsv.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/data creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__pycache__ +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io +creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/app.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/resources -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/structure/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/noe.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/clans.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/whatif.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/dssp.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/fasta.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/cs.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/procheck.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/hhpred.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/__pycache__/mrc.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/bio/utils/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/core/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/wham.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statmech/__pycache__/ensembles.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/io/__pycache__/tsv.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__pycache__ +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__pycache__/integrators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__pycache__ -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/rand.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/__init__.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/maxent.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/ars.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/mixtures.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/__pycache__/scalemixture.cpython-39.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__pycache__ -copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-39.pyc -/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/app.py to app.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-39.pyc +copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.9_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/procheck.py to procheck.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/fasta.py to fasta.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/dssp.py to dssp.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/clans.py to clans.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/cs.py to cs.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/whatif.py to whatif.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/svg.py to svg.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/procheck.py to procheck.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/psipred.py to psipred.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/psipred.py to psipred.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/clans.py to clans.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/svg.py to svg.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/noe.py to noe.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/mrc.py to mrc.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/vasco.py to vasco.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/fasta.py to fasta.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/mrc.py to mrc.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/io/cs.py to cs.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/ars.py to ars.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/maxent.py to maxent.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/rand.py to rand.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/build.py to build.cpython-39.pyc /usr/lib/python3.9/dist-packages/csb/build.py:291: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/dist-packages/csb/build.py:345: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/dist-packages/csb/build.py:477: SyntaxWarning: "is" with a literal. Did you mean "=="? +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/plots.py to plots.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/tsv.py to tsv.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/core/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/wham.py to wham.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/precision.py to precision.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/csfrag.py to csfrag.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/helloworld.py to helloworld.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfit.py to bfit.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/embd.py to embd.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/precision.py to precision.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfite.py to bfite.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/csfrag.py to csfrag.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/embd.py to embd.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/bfit.py to bfit.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/apps/promix.py to promix.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/tsv.py to tsv.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/plots.py to plots.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/io/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/wham.py to wham.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-39.pyc +/usr/lib/python3.9/dist-packages/csb/test/cases/core/__init__.py:73: SyntaxWarning: "is" with a literal. Did you mean "=="? +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/app.py to app.cpython-39.pyc +byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/integrators.py to integrators.cpython-39.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/numeric/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/ars.py to ars.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/rand.py to rand.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb/statistics/maxent.py to maxent.cpython-39.pyc running install_egg_info Copying csb.egg-info to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.9/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt @@ -2334,12 +2401,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/22066/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/22066/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3056 and its subdirectories -I: Current time: Tue Jul 27 01:18:29 -12 2021 -I: pbuilder-time-stamp: 1627391909 +I: removing directory /srv/workspace/pbuilder/22066 and its subdirectories +I: Current time: Wed Jul 28 03:27:31 +14 2021 +I: pbuilder-time-stamp: 1627392451