Diff of the two buildlogs: -- --- b1/build.log 2021-07-12 23:05:36.956772517 +0000 +++ b2/build.log 2021-07-12 23:24:30.662181369 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jul 12 10:46:14 -12 2021 -I: pbuilder-time-stamp: 1626129974 +I: Current time: Tue Jul 13 13:06:56 +14 2021 +I: pbuilder-time-stamp: 1626131216 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./molmodel_3.0~svn842-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.CcPB6ki4/trustedkeys.kbx': General error -gpgv: Signature made Wed Jun 17 16:27:13 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.tdnsL_GI/trustedkeys.kbx': General error +gpgv: Signature made Thu Jun 18 18:27:13 2020 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key @@ -29,135 +29,169 @@ dpkg-source: info: applying remove-failing-tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3804/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/13185/tmp/hooks/D01_modify_environment starting +debug: Running on jtx1b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/13185/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/13185/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='7100c26f5c5d48f9bff06fe12d9a5b6d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3804' - PS1='# ' - PS2='> ' + INVOCATION_ID=38529586405d4311af1f26b9ed01503e + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=13185 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/pbuilderrc_6NEO --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/b1 --logfile b1/build.log molmodel_3.0~svn842-2.dsc' - SUDO_GID='112' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/pbuilderrc_1U0u --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.dTBFf4iJnp/b2 --logfile b2/build.log --extrapackages usrmerge molmodel_3.0~svn842-2.dsc' + SUDO_GID=114 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux virt32b 5.10.0-7-armmp-lpae #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 8 21:26 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/3804/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 13 13:07 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 10 23:28 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/13185/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -338,7 +372,7 @@ Get: 137 http://deb.debian.org/debian bullseye/main armhf libxmu-dev armhf 2:1.1.2-2+b3 [59.3 kB] Get: 138 http://deb.debian.org/debian bullseye/main armhf libsimbody3.6 armhf 3.6.1+dfsg-7 [2738 kB] Get: 139 http://deb.debian.org/debian bullseye/main armhf libsimbody-dev armhf 3.6.1+dfsg-7 [2725 kB] -Fetched 70.4 MB in 10s (7111 kB/s) +Fetched 70.4 MB in 21s (3404 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -915,8 +949,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 1s (69.4 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26500 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/molmodel-3.0~svn842/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../molmodel_3.0~svn842-2_source.changes +hostname: Name or service not known +I: Running cd /build/molmodel-3.0~svn842/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../molmodel_3.0~svn842-2_source.changes dpkg-buildpackage: info: source package molmodel dpkg-buildpackage: info: source version 3.0~svn842-2 dpkg-buildpackage: info: source distribution unstable @@ -961,7 +1032,7 @@ -- Build files have been written to: /build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf dh_auto_build - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' /usr/bin/cmake -S"/build/molmodel-3.0~svn842" -B"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/CMakeFiles" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks" @@ -976,16 +1047,18 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f sharedTarget/CMakeFiles/SimTKmolmodel.dir/build.make sharedTarget/CMakeFiles/SimTKmolmodel.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o -[ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o [ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o +[ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o +[ 2%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o +[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o -c "/build/molmodel-3.0~svn842/src/About.cpp" cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o -c "/build/molmodel-3.0~svn842/src/AtomSubsystem.cpp" cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o -c "/build/molmodel-3.0~svn842/src/Biotype.cpp" -[ 3%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o -c "/build/molmodel-3.0~svn842/src/BondGeometry.cpp" [ 4%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o -c "/build/molmodel-3.0~svn842/src/Compound.cpp" +[ 4%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o -c "/build/molmodel-3.0~svn842/src/CompoundSystem.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, @@ -1009,10 +1082,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 4%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o -c "/build/molmodel-3.0~svn842/src/CompoundSystem.cpp" -[ 5%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o -c "/build/molmodel-3.0~svn842/src/DuMMForceFieldSubsystem.cpp" In file included from /usr/include/c++/10/set:60, from /usr/include/simbody/simmath/internal/Contact.h:30, from /usr/include/simbody/SimTKmath.h:46, @@ -1131,6 +1200,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ +[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o +[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -c "/build/molmodel-3.0~svn842/src/DuMMForceFieldSubsystemRep.cpp" +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o -c "/build/molmodel-3.0~svn842/src/DuMMForceFieldSubsystem.cpp" +[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -c "/build/molmodel-3.0~svn842/src/Element.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, @@ -1141,8 +1216,6 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o -c "/build/molmodel-3.0~svn842/src/DuMMForceFieldSubsystemRep.cpp" /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SimTK::Vec<3, double, 1>&}; _Tp = SimTK::Vec<3>; _Alloc = std::allocator >]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SimTK::BondCenter}; _Tp = SimTK::BondCenter; _Alloc = std::allocator]': @@ -1187,6 +1260,8 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 7%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o -c "/build/molmodel-3.0~svn842/src/MolecularMechanicsSystem.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, @@ -1235,14 +1310,6 @@ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 6%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o -c "/build/molmodel-3.0~svn842/src/Element.cpp" -/usr/include/c++/10/bits/stl_vector.h: In member function 'void SimTK::Protein::loadFromPdbChain(const SimTK::PdbChain&, SimTK::Real)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 7%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o -c "/build/molmodel-3.0~svn842/src/MolecularMechanicsSystem.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, @@ -1267,8 +1334,10 @@ cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o -c "/build/molmodel-3.0~svn842/src/PDBReader.cpp" [ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o -c "/build/molmodel-3.0~svn842/src/Pdb.cpp" -[ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o -c "/build/molmodel-3.0~svn842/src/PeriodicVmdReporter.cpp" +/usr/include/c++/10/bits/stl_vector.h: In member function 'void SimTK::Protein::loadFromPdbChain(const SimTK::PdbChain&, SimTK::Real)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, @@ -1284,8 +1353,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 10%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o -c "/build/molmodel-3.0~svn842/src/RiboseMobilizer.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, @@ -1302,6 +1369,10 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o -c "/build/molmodel-3.0~svn842/src/PeriodicVmdReporter.cpp" +[ 10%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o -c "/build/molmodel-3.0~svn842/src/RiboseMobilizer.cpp" [ 11%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o -c "/build/molmodel-3.0~svn842/src/TinkerAmber99.cpp" [ 11%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o @@ -1330,8 +1401,6 @@ cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o -c "/build/molmodel-3.0~svn842/src/imd.cpp" [ 20%] Building CXX object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o -c "/build/molmodel-3.0~svn842/src/mol.cpp" -[ 21%] Building C object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/cc -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o -c "/build/molmodel-3.0~svn842/src/vmdsock.c" /build/molmodel-3.0~svn842/src/mol.cpp: In function 'void mol_DbGromacsRead(MolModel*, FILE*)': /build/molmodel-3.0~svn842/src/mol.cpp:1326:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 1326 | sprintf (atom_name, " %s", s); @@ -1345,6 +1414,8 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 21%] Building C object sharedTarget/CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/cc -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -DSimTKmolmodel_EXPORTS -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o -c "/build/molmodel-3.0~svn842/src/vmdsock.c" [ 21%] Linking CXX shared library ../libSimTKmolmodel.so cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/sharedTarget" && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimTKmolmodel.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -shared -Wl,-soname,libSimTKmolmodel.so.3.0 -o ../libSimTKmolmodel.so.3.0 CMakeFiles/SimTKmolmodel.dir/__/src/About.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/AtomSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Biotype.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/BondGeometry.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Compound.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/CompoundSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/DuMMForceFieldSubsystemRep.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Element.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/MolecularMechanicsSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PDBReader.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/Pdb.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/PeriodicVmdReporter.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/RiboseMobilizer.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/TinkerAmber99.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VanderWallSphere.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VelocityRescalingThermostat.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/VmdConnection.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuImplicitSolvent.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/CpuObc.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ImplicitSolventParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/ObcParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMCommon.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMLog.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/SimTKOpenMMUtilities.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/gbsa/cpuObcInterface.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/imd.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/mol.cpp.o CMakeFiles/SimTKmolmodel.dir/__/src/vmdsock.c.o /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 -lmmdb2 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm @@ -1354,121 +1425,119 @@ make -f examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend make -f examples/CMakeFiles/ExampleFoldPolyalanine.dir/build.make examples/CMakeFiles/ExampleFoldPolyalanine.dir/depend make -f examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend +make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make examples/CMakeFiles/ExampleCreatePropane.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/DependInfo.cmake" --color= -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/DependInfo.cmake" --color= -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/depend.internal". -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend.internal". +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/DependInfo.cmake" --color= +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleFoldPolyalanine.dir/depend.internal". -Scanning dependencies of target ExampleAdenylateMobilitiesViz +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". +Scanning dependencies of target ExampleCreatePropane +Scanning dependencies of target ExampleFoldPolyalanine +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -make -f examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build Scanning dependencies of target ExampleAdenylateMobilitiesVMD -Scanning dependencies of target ExampleFoldPolyalanine +Scanning dependencies of target ExampleAdenylateMobilitiesViz make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make examples/CMakeFiles/ExampleCreatePropane.dir/build make -f examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/build make -f examples/CMakeFiles/ExampleFoldPolyalanine.dir/build.make examples/CMakeFiles/ExampleFoldPolyalanine.dir/build +make -f examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build.make examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 22%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +[ 22%] Building CXX object examples/CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleCreatePropane.cpp" +[ 23%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleAdenylateMobilitiesViz.cpp" [ 23%] Building CXX object examples/CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -[ 23%] Building CXX object examples/CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleFoldPolyalanine.cpp" cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleAdenylateMobilitiesVMD.cpp" -[ 23%] Linking CXX executable ../ExampleAdenylateMobilitiesViz -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesViz.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -o ../ExampleAdenylateMobilitiesViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 24%] Linking CXX executable ../ExampleAdenylateMobilitiesVMD +[ 24%] Building CXX object examples/CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleFoldPolyalanine.cpp" +[ 26%] Linking CXX executable ../ExampleCreatePropane +[ 26%] Linking CXX executable ../ExampleAdenylateMobilitiesVMD cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/link.txt --verbose=1 +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleCreatePropane.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesVMD.dir/ExampleAdenylateMobilitiesVMD.cpp.o -o ../ExampleAdenylateMobilitiesVMD -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 24%] Built target ExampleAdenylateMobilitiesViz -make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make examples/CMakeFiles/ExampleCreatePropane.dir/depend -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/DependInfo.cmake" --color= -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleCreatePropane.dir/depend.internal". -Scanning dependencies of target ExampleCreatePropane -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -make -f examples/CMakeFiles/ExampleCreatePropane.dir/build.make examples/CMakeFiles/ExampleCreatePropane.dir/build -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 25%] Building CXX object examples/CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleCreatePropane.cpp" -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 25%] Built target ExampleAdenylateMobilitiesVMD -make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/depend -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" --color= -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/depend.internal". -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/depend.internal". -Scanning dependencies of target MolmodelInstallTest -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/build -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 26%] Building CXX object examples/CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -c "/build/molmodel-3.0~svn842/examples/MolmodelInstallTest.cpp" +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -o ../ExampleCreatePropane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 26%] Linking CXX executable ../ExampleAdenylateMobilitiesViz +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleAdenylateMobilitiesViz.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleAdenylateMobilitiesViz.dir/ExampleAdenylateMobilitiesViz.cpp.o -o ../ExampleAdenylateMobilitiesViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 26%] Linking CXX executable ../ExampleFoldPolyalanine cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleFoldPolyalanine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleFoldPolyalanine.dir/ExampleFoldPolyalanine.cpp.o -o ../ExampleFoldPolyalanine -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 26%] Built target ExampleFoldPolyalanine -make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/depend -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/DependInfo.cmake" --color= -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/depend.internal". -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/depend.internal". -Scanning dependencies of target ExampleLoadPdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/build -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 26%] Building CXX object examples/CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleLoadPdb2.cpp" -[ 27%] Linking CXX executable ../ExampleCreatePropane -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleCreatePropane.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleCreatePropane.dir/ExampleCreatePropane.cpp.o -o ../ExampleCreatePropane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 28%] Linking CXX executable ../ExampleLoadPdb2 -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -o ../ExampleLoadPdb2 -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 26%] Built target ExampleAdenylateMobilitiesVMD make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 28%] Built target ExampleCreatePropane +[ 26%] Built target ExampleCreatePropane +make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/depend +make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/depend +[ 26%] Built target ExampleAdenylateMobilitiesViz make -f examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build.make examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/DependInfo.cmake" --color= cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/DependInfo.cmake" --color= +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoArgonAtoms.dir/depend.internal". -Scanning dependencies of target ExampleTwoArgonAtoms -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -make -f examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build.make examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 29%] Building CXX object examples/CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleTwoArgonAtoms.cpp" +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb2.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTest.dir/depend.internal". make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 29%] Built target ExampleLoadPdb2 +[ 26%] Built target ExampleFoldPolyalanine make -f examples/CMakeFiles/ExampleRigidProtein.dir/build.make examples/CMakeFiles/ExampleRigidProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleRigidProtein.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleRigidProtein.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleRigidProtein.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleRigidProtein.dir/depend.internal". +Scanning dependencies of target ExampleLoadPdb2 Scanning dependencies of target ExampleRigidProtein +Scanning dependencies of target MolmodelInstallTest +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +make -f examples/CMakeFiles/ExampleLoadPdb2.dir/build.make examples/CMakeFiles/ExampleLoadPdb2.dir/build make -f examples/CMakeFiles/ExampleRigidProtein.dir/build.make examples/CMakeFiles/ExampleRigidProtein.dir/build +Scanning dependencies of target ExampleTwoArgonAtoms +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +make -f examples/CMakeFiles/MolmodelInstallTest.dir/build.make examples/CMakeFiles/MolmodelInstallTest.dir/build +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +make -f examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build.make examples/CMakeFiles/ExampleTwoArgonAtoms.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 30%] Building CXX object examples/CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +[ 27%] Building CXX object examples/CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o +[ 27%] Building CXX object examples/CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o +[ 28%] Building CXX object examples/CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -c "/build/molmodel-3.0~svn842/examples/MolmodelInstallTest.cpp" +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleLoadPdb2.cpp" +[ 29%] Building CXX object examples/CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleTwoArgonAtoms.cpp" cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleRigidProtein.cpp" -[ 31%] Linking CXX executable ../MolmodelInstallTest -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -o ../MolmodelInstallTest -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 30%] Linking CXX executable ../ExampleTwoArgonAtoms +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoArgonAtoms.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -o ../ExampleTwoArgonAtoms -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 31%] Linking CXX executable ../ExampleLoadPdb2 +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb2.dir/ExampleLoadPdb2.cpp.o -o ../ExampleLoadPdb2 -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 31%] Built target MolmodelInstallTest +[ 31%] Built target ExampleTwoArgonAtoms make -f examples/CMakeFiles/ExampleSimpleProtein.dir/build.make examples/CMakeFiles/ExampleSimpleProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleProtein.dir/DependInfo.cmake" --color= @@ -1480,11 +1549,8 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 31%] Building CXX object examples/CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleSimpleProtein.cpp" -[ 32%] Linking CXX executable ../ExampleTwoArgonAtoms -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoArgonAtoms.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoArgonAtoms.dir/ExampleTwoArgonAtoms.cpp.o -o ../ExampleTwoArgonAtoms -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 32%] Built target ExampleTwoArgonAtoms +[ 31%] Built target ExampleLoadPdb2 make -f examples/CMakeFiles/ExampleSimpleRNA.dir/build.make examples/CMakeFiles/ExampleSimpleRNA.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleSimpleRNA.dir/DependInfo.cmake" --color= @@ -1494,13 +1560,16 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleSimpleRNA.dir/build.make examples/CMakeFiles/ExampleSimpleRNA.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 33%] Building CXX object examples/CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o +[ 32%] Building CXX object examples/CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleSimpleRNA.cpp" +[ 33%] Linking CXX executable ../MolmodelInstallTest +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTest.dir/MolmodelInstallTest.cpp.o -o ../MolmodelInstallTest -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 34%] Linking CXX executable ../ExampleRigidProtein cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleRigidProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleRigidProtein.dir/ExampleRigidProtein.cpp.o -o ../ExampleRigidProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 34%] Built target ExampleRigidProtein +[ 34%] Built target MolmodelInstallTest make -f examples/CMakeFiles/ExampleTwoEthanes.dir/build.make examples/CMakeFiles/ExampleTwoEthanes.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleTwoEthanes.dir/DependInfo.cmake" --color= @@ -1509,15 +1578,12 @@ Scanning dependencies of target ExampleTwoEthanes make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleTwoEthanes.dir/build.make examples/CMakeFiles/ExampleTwoEthanes.dir/build +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +[ 34%] Built target ExampleRigidProtein +make -f examples/CMakeFiles/ExampleLoadPdb.dir/build.make examples/CMakeFiles/ExampleLoadPdb.dir/depend [ 35%] Building CXX object examples/CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleTwoEthanes.cpp" -[ 36%] Linking CXX executable ../ExampleSimpleProtein -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleProtein.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -o ../ExampleSimpleProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 36%] Built target ExampleSimpleProtein -make -f examples/CMakeFiles/ExampleLoadPdb.dir/build.make examples/CMakeFiles/ExampleLoadPdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/ExampleLoadPdb.dir/depend.internal". @@ -1526,14 +1592,20 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/ExampleLoadPdb.dir/build.make examples/CMakeFiles/ExampleLoadPdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 37%] Building CXX object examples/CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o +[ 36%] Building CXX object examples/CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -c "/build/molmodel-3.0~svn842/examples/ExampleLoadPdb.cpp" +[ 37%] Linking CXX executable ../ExampleLoadPdb +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -o ../ExampleLoadPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 37%] Linking CXX executable ../ExampleSimpleRNA cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleRNA.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleRNA.dir/ExampleSimpleRNA.cpp.o -o ../ExampleSimpleRNA -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 37%] Built target ExampleSimpleRNA +[ 38%] Linking CXX executable ../ExampleSimpleProtein +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleSimpleProtein.dir/link.txt --verbose=1 +[ 38%] Built target ExampleLoadPdb make -f examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build.make examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleSimpleProtein.dir/ExampleSimpleProtein.cpp.o -o ../ExampleSimpleProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples/CMakeFiles/MolmodelInstallTestNoViz.dir/depend.internal". @@ -1542,13 +1614,10 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build.make examples/CMakeFiles/MolmodelInstallTestNoViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 37%] Building CXX object examples/CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o +[ 38%] Building CXX object examples/CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -c "/build/molmodel-3.0~svn842/examples/MolmodelInstallTestNoViz.cpp" -[ 37%] Linking CXX executable ../ExampleTwoEthanes -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoEthanes.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -o ../ExampleTwoEthanes -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 37%] Built target ExampleTwoEthanes +[ 38%] Built target ExampleSimpleRNA make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteSimtimePdb.dir/DependInfo.cmake" --color= @@ -1558,29 +1627,26 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestWriteSimtimePdb.dir/build.make tests/CMakeFiles/TestWriteSimtimePdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 38%] Building CXX object tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o +[ 39%] Building CXX object tests/CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestWriteSimtimePdb.cpp" -[ 39%] Linking CXX executable ../ExampleLoadPdb -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleLoadPdb.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleLoadPdb.dir/ExampleLoadPdb.cpp.o -o ../ExampleLoadPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 39%] Built target ExampleLoadPdb +[ 39%] Built target ExampleSimpleProtein make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTorsionPartitioner.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTorsionPartitioner.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTorsionPartitioner.dir/depend.internal". +[ 39%] Linking CXX executable ../ExampleTwoEthanes +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExampleTwoEthanes.dir/link.txt --verbose=1 Scanning dependencies of target TestTorsionPartitioner make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestTorsionPartitioner.dir/build.make tests/CMakeFiles/TestTorsionPartitioner.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 40%] Building CXX object tests/CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestTorsionPartitioner.cpp" -[ 41%] Linking CXX executable ../MolmodelInstallTestNoViz -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTestNoViz.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -o ../MolmodelInstallTestNoViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/ExampleTwoEthanes.dir/ExampleTwoEthanes.cpp.o -o ../ExampleTwoEthanes -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 41%] Built target MolmodelInstallTestNoViz +[ 40%] Built target ExampleTwoEthanes make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestTinkerAmber.dir/DependInfo.cmake" --color= @@ -1590,13 +1656,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestTinkerAmber.dir/build.make tests/CMakeFiles/TestTinkerAmber.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 42%] Building CXX object tests/CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o +[ 41%] Building CXX object tests/CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestTinkerAmber.cpp" -[ 43%] Linking CXX executable ../TestWriteSimtimePdb -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteSimtimePdb.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -o ../TestWriteSimtimePdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 41%] Linking CXX executable ../TestTinkerAmber +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTinkerAmber.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -o ../TestTinkerAmber -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 43%] Built target TestWriteSimtimePdb +[ 41%] Built target TestTinkerAmber make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestVelocityRescalingThermostat.dir/DependInfo.cmake" --color= @@ -1606,13 +1672,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build.make tests/CMakeFiles/TestVelocityRescalingThermostat.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 44%] Building CXX object tests/CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o +[ 42%] Building CXX object tests/CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestVelocityRescalingThermostat.cpp" -[ 45%] Linking CXX executable ../TestTorsionPartitioner -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTorsionPartitioner.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -o ../TestTorsionPartitioner -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 43%] Linking CXX executable ../MolmodelInstallTestNoViz +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/examples" && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolmodelInstallTestNoViz.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/MolmodelInstallTestNoViz.dir/MolmodelInstallTestNoViz.cpp.o -o ../MolmodelInstallTestNoViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf:" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 45%] Built target TestTorsionPartitioner +[ 43%] Built target MolmodelInstallTestNoViz make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestShortPdbLines.dir/DependInfo.cmake" --color= @@ -1622,13 +1688,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestShortPdbLines.dir/build.make tests/CMakeFiles/TestShortPdbLines.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 45%] Building CXX object tests/CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o +[ 43%] Building CXX object tests/CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestShortPdbLines.cpp" -[ 45%] Linking CXX executable ../TestTinkerAmber -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTinkerAmber.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTinkerAmber.dir/TestTinkerAmber.cpp.o -o ../TestTinkerAmber -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 44%] Linking CXX executable ../TestWriteSimtimePdb +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteSimtimePdb.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteSimtimePdb.dir/TestWriteSimtimePdb.cpp.o -o ../TestWriteSimtimePdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 45%] Built target TestTinkerAmber +[ 44%] Built target TestWriteSimtimePdb make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGbsa.dir/DependInfo.cmake" --color= @@ -1638,13 +1704,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestGbsa.dir/build.make tests/CMakeFiles/TestGbsa.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 45%] Building CXX object tests/CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o +[ 44%] Building CXX object tests/CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestGbsa.cpp" -[ 45%] Linking CXX executable ../TestVelocityRescalingThermostat -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVelocityRescalingThermostat.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -o ../TestVelocityRescalingThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 45%] Linking CXX executable ../TestTorsionPartitioner +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestTorsionPartitioner.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestTorsionPartitioner.dir/TestTorsionPartitioner.cpp.o -o ../TestTorsionPartitioner -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 45%] Built target TestVelocityRescalingThermostat +[ 45%] Built target TestTorsionPartitioner make -f tests/CMakeFiles/TestGetAtomName.dir/build.make tests/CMakeFiles/TestGetAtomName.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestGetAtomName.dir/DependInfo.cmake" --color= @@ -1656,11 +1722,11 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 46%] Building CXX object tests/CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestGetAtomName.cpp" -[ 47%] Linking CXX executable ../TestShortPdbLines -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestShortPdbLines.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -o ../TestShortPdbLines -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 46%] Linking CXX executable ../TestVelocityRescalingThermostat +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestVelocityRescalingThermostat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestVelocityRescalingThermostat.dir/TestVelocityRescalingThermostat.cpp.o -o ../TestVelocityRescalingThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 47%] Built target TestShortPdbLines +[ 46%] Built target TestVelocityRescalingThermostat make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProteinDihedrals.dir/DependInfo.cmake" --color= @@ -1670,13 +1736,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestProteinDihedrals.dir/build.make tests/CMakeFiles/TestProteinDihedrals.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 47%] Building CXX object tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o +[ 46%] Building CXX object tests/CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestProteinDihedrals.cpp" -[ 48%] Linking CXX executable ../TestGbsa -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGbsa.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -o ../TestGbsa -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 47%] Linking CXX executable ../TestShortPdbLines +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestShortPdbLines.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestShortPdbLines.dir/TestShortPdbLines.cpp.o -o ../TestShortPdbLines -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 48%] Built target TestGbsa +[ 47%] Built target TestShortPdbLines make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestDuMMForces.dir/DependInfo.cmake" --color= @@ -1686,45 +1752,45 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestDuMMForces.dir/build.make tests/CMakeFiles/TestDuMMForces.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 48%] Building CXX object tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o +[ 47%] Building CXX object tests/CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestDuMMForces.cpp" -[ 49%] Linking CXX executable ../TestProteinDihedrals -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProteinDihedrals.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -o ../TestProteinDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 50%] Linking CXX executable ../TestGetAtomName -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGetAtomName.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -o ../TestGetAtomName -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +[ 48%] Linking CXX executable ../TestGbsa +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGbsa.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGbsa.dir/TestGbsa.cpp.o -o ../TestGbsa -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 50%] Built target TestGetAtomName +[ 48%] Built target TestGbsa make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestForeignBodyIds.dir/DependInfo.cmake" --color= -[ 50%] Built target TestProteinDihedrals -make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/depend -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestForeignBodyIds.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestForeignBodyIds.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestForeignBodyIds.dir/depend.internal". -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/depend.internal". -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/depend.internal". Scanning dependencies of target TestForeignBodyIds make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestForeignBodyIds.dir/build.make tests/CMakeFiles/TestForeignBodyIds.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +[ 49%] Building CXX object tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestForeignBodyIds.cpp" +[ 50%] Linking CXX executable ../TestGetAtomName +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGetAtomName.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestGetAtomName.dir/TestGetAtomName.cpp.o -o ../TestGetAtomName -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +[ 50%] Built target TestGetAtomName +make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/depend +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/DependInfo.cmake" --color= +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRna.dir/depend.internal". Scanning dependencies of target TestRna make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestRna.dir/build.make tests/CMakeFiles/TestRna.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 51%] Building CXX object tests/CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestForeignBodyIds.cpp" -[ 51%] Building CXX object tests/CMakeFiles/TestRna.dir/TestRna.cpp.o +[ 50%] Building CXX object tests/CMakeFiles/TestRna.dir/TestRna.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestRna.dir/TestRna.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestRna.cpp" -[ 52%] Linking CXX executable ../TestDuMMForces -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestDuMMForces.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -o ../TestDuMMForces -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 51%] Linking CXX executable ../TestProteinDihedrals +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProteinDihedrals.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProteinDihedrals.dir/TestProteinDihedrals.cpp.o -o ../TestProteinDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 52%] Built target TestDuMMForces +[ 51%] Built target TestProteinDihedrals make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoneAtomCoordinates.dir/DependInfo.cmake" --color= @@ -1734,13 +1800,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestLoneAtomCoordinates.dir/build.make tests/CMakeFiles/TestLoneAtomCoordinates.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 53%] Building CXX object tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o +[ 52%] Building CXX object tests/CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestLoneAtomCoordinates.cpp" -[ 54%] Linking CXX executable ../TestForeignBodyIds -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestForeignBodyIds.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -o ../TestForeignBodyIds -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 53%] Linking CXX executable ../TestDuMMForces +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestDuMMForces.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestDuMMForces.dir/TestDuMMForces.cpp.o -o ../TestDuMMForces -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 54%] Built target TestForeignBodyIds +[ 53%] Built target TestDuMMForces make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestCompoundTransforms.dir/DependInfo.cmake" --color= @@ -1750,13 +1816,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestCompoundTransforms.dir/build.make tests/CMakeFiles/TestCompoundTransforms.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 55%] Building CXX object tests/CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o +[ 54%] Building CXX object tests/CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestCompoundTransforms.cpp" -[ 56%] Linking CXX executable ../TestRna -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRna.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRna.dir/TestRna.cpp.o -o ../TestRna -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 55%] Linking CXX executable ../TestForeignBodyIds +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestForeignBodyIds.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestForeignBodyIds.dir/TestForeignBodyIds.cpp.o -o ../TestForeignBodyIds -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 56%] Built target TestRna +[ 55%] Built target TestForeignBodyIds make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestProtein.dir/DependInfo.cmake" --color= @@ -1766,13 +1832,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestProtein.dir/build.make tests/CMakeFiles/TestProtein.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 57%] Building CXX object tests/CMakeFiles/TestProtein.dir/TestProtein.cpp.o +[ 56%] Building CXX object tests/CMakeFiles/TestProtein.dir/TestProtein.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestProtein.dir/TestProtein.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestProtein.cpp" -[ 57%] Linking CXX executable ../TestLoneAtomCoordinates +[ 56%] Linking CXX executable ../TestLoneAtomCoordinates cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoneAtomCoordinates.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoneAtomCoordinates.dir/TestLoneAtomCoordinates.cpp.o -o ../TestLoneAtomCoordinates -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 57%] Built target TestLoneAtomCoordinates +[ 56%] Built target TestLoneAtomCoordinates make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiotypeSelfCode.dir/DependInfo.cmake" --color= @@ -1782,13 +1848,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestBiotypeSelfCode.dir/build.make tests/CMakeFiles/TestBiotypeSelfCode.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 58%] Building CXX object tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o +[ 57%] Building CXX object tests/CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBiotypeSelfCode.cpp" -[ 59%] Linking CXX executable ../TestCompoundTransforms -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCompoundTransforms.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -o ../TestCompoundTransforms -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 58%] Linking CXX executable ../TestRna +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRna.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRna.dir/TestRna.cpp.o -o ../TestRna -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 59%] Built target TestCompoundTransforms +[ 58%] Built target TestRna make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestWriteDefaultPdb.dir/DependInfo.cmake" --color= @@ -1798,13 +1864,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestWriteDefaultPdb.dir/build.make tests/CMakeFiles/TestWriteDefaultPdb.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 60%] Building CXX object tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o +[ 59%] Building CXX object tests/CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestWriteDefaultPdb.cpp" -[ 61%] Linking CXX executable ../TestProtein -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProtein.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProtein.dir/TestProtein.cpp.o -o ../TestProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 60%] Linking CXX executable ../TestCompoundTransforms +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestCompoundTransforms.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestCompoundTransforms.dir/TestCompoundTransforms.cpp.o -o ../TestCompoundTransforms -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 61%] Built target TestProtein +[ 60%] Built target TestCompoundTransforms make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestEthane.dir/DependInfo.cmake" --color= @@ -1814,13 +1880,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestEthane.dir/build.make tests/CMakeFiles/TestEthane.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 62%] Building CXX object tests/CMakeFiles/TestEthane.dir/TestEthane.cpp.o +[ 61%] Building CXX object tests/CMakeFiles/TestEthane.dir/TestEthane.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestEthane.dir/TestEthane.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestEthane.cpp" -[ 63%] Linking CXX executable ../TestBiotypeSelfCode +[ 62%] Linking CXX executable ../TestBiotypeSelfCode cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiotypeSelfCode.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiotypeSelfCode.dir/TestBiotypeSelfCode.cpp.o -o ../TestBiotypeSelfCode -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 63%] Built target TestBiotypeSelfCode +[ 62%] Built target TestBiotypeSelfCode make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/DependInfo.cmake" --color= @@ -1830,13 +1896,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build.make tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 63%] Building CXX object tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o +[ 62%] Building CXX object tests/CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestLoadVariantRnaAtomNames.cpp" -[ 64%] Linking CXX executable ../TestWriteDefaultPdb -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteDefaultPdb.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -o ../TestWriteDefaultPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 63%] Linking CXX executable ../TestProtein +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestProtein.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestProtein.dir/TestProtein.cpp.o -o ../TestProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 64%] Built target TestWriteDefaultPdb +[ 63%] Built target TestProtein make -f tests/CMakeFiles/TestBiopolymer.dir/build.make tests/CMakeFiles/TestBiopolymer.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBiopolymer.dir/DependInfo.cmake" --color= @@ -1846,27 +1912,27 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestBiopolymer.dir/build.make tests/CMakeFiles/TestBiopolymer.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 65%] Building CXX object tests/CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o +[ 64%] Building CXX object tests/CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBiopolymer.cpp" -[ 65%] Linking CXX executable ../TestEthane -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthane.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthane.dir/TestEthane.cpp.o -o ../TestEthane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 65%] Linking CXX executable ../TestWriteDefaultPdb +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteDefaultPdb.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteDefaultPdb.dir/TestWriteDefaultPdb.cpp.o -o ../TestWriteDefaultPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 66%] Linking CXX executable ../TestLoadVariantRnaAtomNames -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadVariantRnaAtomNames.dir/link.txt --verbose=1 -[ 66%] Built target TestEthane +[ 65%] Built target TestWriteDefaultPdb make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBodyIds.dir/DependInfo.cmake" --color= -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -o ../TestLoadVariantRnaAtomNames -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBodyIds.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBodyIds.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestBodyIds.dir/depend.internal". Scanning dependencies of target TestBodyIds make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestBodyIds.dir/build.make tests/CMakeFiles/TestBodyIds.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 66%] Building CXX object tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o +[ 65%] Building CXX object tests/CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestBodyIds.cpp" +[ 66%] Linking CXX executable ../TestLoadVariantRnaAtomNames +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestLoadVariantRnaAtomNames.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestLoadVariantRnaAtomNames.dir/TestLoadVariantRnaAtomNames.cpp.o -o ../TestLoadVariantRnaAtomNames -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 66%] Built target TestLoadVariantRnaAtomNames make -f tests/CMakeFiles/TestAtomTargetLocations.dir/build.make tests/CMakeFiles/TestAtomTargetLocations.dir/depend @@ -1880,27 +1946,27 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 67%] Building CXX object tests/CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestAtomTargetLocations.cpp" -[ 67%] Linking CXX executable ../TestBiopolymer -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiopolymer.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -o ../TestBiopolymer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 67%] Linking CXX executable ../TestEthane +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestEthane.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestEthane.dir/TestEthane.cpp.o -o ../TestEthane -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 67%] Built target TestBiopolymer +[ 67%] Built target TestEthane make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethaneCartesian.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethaneCartesian.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethaneCartesian.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethaneCartesian.dir/depend.internal". +[ 67%] Linking CXX executable ../TestBiopolymer +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBiopolymer.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBiopolymer.dir/TestBiopolymer.cpp.o -o ../TestBiopolymer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 Scanning dependencies of target TestMethaneCartesian make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestMethaneCartesian.dir/build.make tests/CMakeFiles/TestMethaneCartesian.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 68%] Building CXX object tests/CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestMethaneCartesian.cpp" -[ 69%] Linking CXX executable ../TestBodyIds -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBodyIds.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -o ../TestBodyIds -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 69%] Built target TestBodyIds +[ 68%] Built target TestBiopolymer make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitionerDihedrals.dir/DependInfo.cmake" --color= @@ -1910,13 +1976,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestPartitionerDihedrals.dir/build.make tests/CMakeFiles/TestPartitionerDihedrals.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 70%] Building CXX object tests/CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o +[ 69%] Building CXX object tests/CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPartitionerDihedrals.cpp" -[ 71%] Linking CXX executable ../TestAtomTargetLocations -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestAtomTargetLocations.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -o ../TestAtomTargetLocations -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 70%] Linking CXX executable ../TestBodyIds +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestBodyIds.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestBodyIds.dir/TestBodyIds.cpp.o -o ../TestBodyIds -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 71%] Built target TestAtomTargetLocations +[ 70%] Built target TestBodyIds make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSetTorsion.dir/DependInfo.cmake" --color= @@ -1926,13 +1992,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestSetTorsion.dir/build.make tests/CMakeFiles/TestSetTorsion.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 72%] Building CXX object tests/CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o +[ 71%] Building CXX object tests/CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestSetTorsion.cpp" -[ 73%] Linking CXX executable ../TestMethaneCartesian +[ 72%] Linking CXX executable ../TestMethaneCartesian cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethaneCartesian.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethaneCartesian.dir/TestMethaneCartesian.cpp.o -o ../TestMethaneCartesian -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 73%] Built target TestMethaneCartesian +[ 72%] Built target TestMethaneCartesian make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNoseHooverThermostat.dir/DependInfo.cmake" --color= @@ -1942,13 +2008,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestNoseHooverThermostat.dir/build.make tests/CMakeFiles/TestNoseHooverThermostat.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 73%] Building CXX object tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o +[ 72%] Building CXX object tests/CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestNoseHooverThermostat.cpp" -[ 74%] Linking CXX executable ../TestPartitionerDihedrals +[ 73%] Linking CXX executable ../TestPartitionerDihedrals cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitionerDihedrals.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitionerDihedrals.dir/TestPartitionerDihedrals.cpp.o -o ../TestPartitionerDihedrals -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 74%] Built target TestPartitionerDihedrals +[ 73%] Built target TestPartitionerDihedrals make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestNucleotide2.dir/DependInfo.cmake" --color= @@ -1958,13 +2024,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestNucleotide2.dir/build.make tests/CMakeFiles/TestNucleotide2.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 75%] Building CXX object tests/CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o +[ 74%] Building CXX object tests/CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestNucleotide2.cpp" -[ 76%] Linking CXX executable ../TestSetTorsion -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSetTorsion.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -o ../TestSetTorsion -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 75%] Linking CXX executable ../TestAtomTargetLocations +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestAtomTargetLocations.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestAtomTargetLocations.dir/TestAtomTargetLocations.cpp.o -o ../TestAtomTargetLocations -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 76%] Built target TestSetTorsion +[ 75%] Built target TestAtomTargetLocations make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestRiboseMobilizer.dir/DependInfo.cmake" --color= @@ -1974,13 +2040,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestRiboseMobilizer.dir/build.make tests/CMakeFiles/TestRiboseMobilizer.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 77%] Building CXX object tests/CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o +[ 76%] Building CXX object tests/CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestRiboseMobilizer.cpp" -[ 78%] Linking CXX executable ../TestNoseHooverThermostat -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNoseHooverThermostat.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -o ../TestNoseHooverThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 77%] Linking CXX executable ../TestSetTorsion +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSetTorsion.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSetTorsion.dir/TestSetTorsion.cpp.o -o ../TestSetTorsion -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 78%] Built target TestNoseHooverThermostat +[ 77%] Built target TestSetTorsion make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMethanol.dir/DependInfo.cmake" --color= @@ -1990,24 +2056,8 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestMethanol.dir/build.make tests/CMakeFiles/TestMethanol.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 79%] Building CXX object tests/CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o +[ 78%] Building CXX object tests/CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestMethanol.cpp" -[ 80%] Linking CXX executable ../TestNucleotide2 -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNucleotide2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -o ../TestNucleotide2 -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 80%] Built target TestNucleotide2 -make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/depend -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake" --color= -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/depend.internal". -Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/depend.internal". -Scanning dependencies of target TestOxygenMolecule -make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/build -make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 80%] Building CXX object tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestOxygenMolecule.cpp" In file included from /usr/include/c++/10/vector:72, from /usr/include/simbody/SimTKcommon/internal/Array.h:39, from /usr/include/simbody/SimTKcommon/basics.h:53, @@ -2023,27 +2073,43 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 81%] Linking CXX executable ../TestRiboseMobilizer +[ 79%] Linking CXX executable ../TestRiboseMobilizer cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestRiboseMobilizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestRiboseMobilizer.dir/TestRiboseMobilizer.cpp.o -o ../TestRiboseMobilizer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 80%] Linking CXX executable ../TestNoseHooverThermostat +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNoseHooverThermostat.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNoseHooverThermostat.dir/TestNoseHooverThermostat.cpp.o -o ../TestNoseHooverThermostat -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +[ 80%] Built target TestRiboseMobilizer +make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/depend +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake" --color= +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/depend.internal". +Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestOxygenMolecule.dir/depend.internal". +Scanning dependencies of target TestOxygenMolecule +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 81%] Built target TestRiboseMobilizer +make -f tests/CMakeFiles/TestOxygenMolecule.dir/build.make tests/CMakeFiles/TestOxygenMolecule.dir/build +make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +[ 80%] Built target TestNoseHooverThermostat make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/depend +[ 80%] Building CXX object tests/CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestOxygenMolecule.cpp" make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitioner.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitioner.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitioner.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPartitioner.dir/depend.internal". +[ 81%] Linking CXX executable ../TestNucleotide2 +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestNucleotide2.dir/link.txt --verbose=1 Scanning dependencies of target TestPartitioner make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestPartitioner.dir/build.make tests/CMakeFiles/TestPartitioner.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 82%] Building CXX object tests/CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPartitioner.cpp" -[ 82%] Linking CXX executable ../TestMethanol -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethanol.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -o ../TestMethanol -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestNucleotide2.dir/TestNucleotide2.cpp.o -o ../TestNucleotide2 -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 82%] Built target TestMethanol +[ 82%] Built target TestNucleotide2 make -f tests/CMakeFiles/TestFitMagnesiums.dir/build.make tests/CMakeFiles/TestFitMagnesiums.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestFitMagnesiums.dir/DependInfo.cmake" --color= @@ -2055,11 +2121,11 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 83%] Building CXX object tests/CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestFitMagnesiums.cpp" -[ 84%] Linking CXX executable ../TestOxygenMolecule -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestOxygenMolecule.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -o ../TestOxygenMolecule -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 83%] Linking CXX executable ../TestMethanol +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMethanol.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMethanol.dir/TestMethanol.cpp.o -o ../TestMethanol -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 84%] Built target TestOxygenMolecule +[ 83%] Built target TestMethanol make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestPositiveControl.dir/DependInfo.cmake" --color= @@ -2069,13 +2135,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestPositiveControl.dir/build.make tests/CMakeFiles/TestPositiveControl.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 85%] Building CXX object tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o +[ 84%] Building CXX object tests/CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestPositiveControl.cpp" -[ 85%] Linking CXX executable ../TestPositiveControl +[ 84%] Linking CXX executable ../TestPositiveControl cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPositiveControl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPositiveControl.dir/TestPositiveControl.cpp.o -o ../TestPositiveControl -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 85%] Built target TestPositiveControl +[ 84%] Built target TestPositiveControl make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestMgSolvationEnergy.dir/DependInfo.cmake" --color= @@ -2085,16 +2151,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestMgSolvationEnergy.dir/build.make tests/CMakeFiles/TestMgSolvationEnergy.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 86%] Building CXX object tests/CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o +[ 85%] Building CXX object tests/CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestMgSolvationEnergy.cpp" -[ 86%] Linking CXX executable ../TestPartitioner -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitioner.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -o ../TestPartitioner -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 -[ 86%] Linking CXX executable ../TestFitMagnesiums -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFitMagnesiums.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -o ../TestFitMagnesiums -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 86%] Linking CXX executable ../TestOxygenMolecule +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestOxygenMolecule.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestOxygenMolecule.dir/TestOxygenMolecule.cpp.o -o ../TestOxygenMolecule -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 86%] Built target TestPartitioner +[ 86%] Built target TestOxygenMolecule make -f tests/CMakeFiles/TestSanityDuMM.dir/build.make tests/CMakeFiles/TestSanityDuMM.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSanityDuMM.dir/DependInfo.cmake" --color= @@ -2106,6 +2169,9 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 87%] Building CXX object tests/CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestSanityDuMM.cpp" +[ 87%] Linking CXX executable ../TestFitMagnesiums +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestFitMagnesiums.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestFitMagnesiums.dir/TestFitMagnesiums.cpp.o -o ../TestFitMagnesiums -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 87%] Built target TestFitMagnesiums make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/depend @@ -2113,17 +2179,17 @@ cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSerine.dir/DependInfo.cmake" --color= Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSerine.dir/DependInfo.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSerine.dir/depend.internal". Dependee "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/CMakeFiles/TestSerine.dir/depend.internal". +[ 87%] Linking CXX executable ../TestPartitioner +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestPartitioner.dir/link.txt --verbose=1 Scanning dependencies of target TestSerine make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/CMakeFiles/TestSerine.dir/build.make tests/CMakeFiles/TestSerine.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 88%] Building CXX object tests/CMakeFiles/TestSerine.dir/TestSerine.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSerine.dir/TestSerine.cpp.o -c "/build/molmodel-3.0~svn842/tests/TestSerine.cpp" -[ 89%] Linking CXX executable ../TestMgSolvationEnergy -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMgSolvationEnergy.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -o ../TestMgSolvationEnergy -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestPartitioner.dir/TestPartitioner.cpp.o -o ../TestPartitioner -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 89%] Built target TestMgSolvationEnergy +[ 88%] Built target TestPartitioner make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/DependInfo.cmake" --color= @@ -2133,13 +2199,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 90%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o +[ 89%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/RemoveMassCenterDrift.cpp" -[ 90%] Linking CXX executable ../TestSanityDuMM -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSanityDuMM.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -o ../TestSanityDuMM -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 90%] Linking CXX executable ../TestMgSolvationEnergy +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestMgSolvationEnergy.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestMgSolvationEnergy.dir/TestMgSolvationEnergy.cpp.o -o ../TestMgSolvationEnergy -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 90%] Built target TestSanityDuMM +[ 90%] Built target TestMgSolvationEnergy make -f tests/adhoc/CMakeFiles/TestSimpleProtein.dir/build.make tests/adhoc/CMakeFiles/TestSimpleProtein.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSimpleProtein.dir/DependInfo.cmake" --color= @@ -2151,11 +2217,11 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 91%] Building CXX object tests/adhoc/CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestSimpleProtein.cpp" -[ 92%] Linking CXX executable ../TestSerine -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerine.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerine.dir/TestSerine.cpp.o -o ../TestSerine -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 91%] Linking CXX executable ../TestSanityDuMM +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSanityDuMM.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSanityDuMM.dir/TestSanityDuMM.cpp.o -o ../TestSanityDuMM -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 92%] Built target TestSerine +[ 91%] Built target TestSanityDuMM make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/DependInfo.cmake" --color= @@ -2165,13 +2231,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build.make tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 92%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o +[ 91%] Building CXX object tests/adhoc/CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/RemoveMassCenterDriftWithOptimizer.cpp" -[ 93%] Linking CXX executable ../../RemoveMassCenterDrift -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDrift.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -o ../../RemoveMassCenterDrift -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 92%] Linking CXX executable ../TestSerine +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerine.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerine.dir/TestSerine.cpp.o -o ../TestSerine -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 93%] Built target RemoveMassCenterDrift +[ 92%] Built target TestSerine make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSerineWithViz.dir/DependInfo.cmake" --color= @@ -2181,13 +2247,16 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSerineWithViz.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 94%] Building CXX object tests/adhoc/CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o +[ 93%] Building CXX object tests/adhoc/CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestSerineWithViz.cpp" +[ 94%] Linking CXX executable ../../RemoveMassCenterDrift +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDrift.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDrift.dir/RemoveMassCenterDrift.cpp.o -o ../../RemoveMassCenterDrift -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 [ 95%] Linking CXX executable ../../TestSimpleProtein cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSimpleProtein.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSimpleProtein.dir/TestSimpleProtein.cpp.o -o ../../TestSimpleProtein -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 95%] Built target TestSimpleProtein +[ 95%] Built target RemoveMassCenterDrift make -f tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/build.make tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/DependInfo.cmake" --color= @@ -2199,11 +2268,8 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 95%] Building CXX object tests/adhoc/CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestWriteLargerPdb.cpp" -[ 96%] Linking CXX executable ../../RemoveMassCenterDriftWithOptimizer -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -o ../../RemoveMassCenterDriftWithOptimizer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 96%] Built target RemoveMassCenterDriftWithOptimizer +[ 95%] Built target TestSimpleProtein make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/DependInfo.cmake" --color= @@ -2213,13 +2279,13 @@ make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' make -f tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build.make tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/build make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 97%] Building CXX object tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o +[ 96%] Building CXX object tests/adhoc/CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestEthaneFromSimbody.dir/TestEthaneFromSimbody.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestEthaneFromSimbody.cpp" -[ 97%] Linking CXX executable ../../TestSerineWithViz -cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerineWithViz.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -o ../../TestSerineWithViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +[ 97%] Linking CXX executable ../../RemoveMassCenterDriftWithOptimizer +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/RemoveMassCenterDriftWithOptimizer.dir/RemoveMassCenterDriftWithOptimizer.cpp.o -o ../../RemoveMassCenterDriftWithOptimizer -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' -[ 97%] Built target TestSerineWithViz +[ 97%] Built target RemoveMassCenterDriftWithOptimizer make -f tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/build.make tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/depend make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/molmodel-3.0~svn842" "/build/molmodel-3.0~svn842/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/DependInfo.cmake" --color= @@ -2231,6 +2297,11 @@ make[3]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' [ 97%] Building CXX object tests/adhoc/CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/c++ -DMMDB2_LIB_USAGE -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=0 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"unknown\" -I"/build/molmodel-3.0~svn842/src" -I"/build/molmodel-3.0~svn842/./include" -isystem /usr/include/simbody -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/TestSodiumWithViz.dir/TestSodiumWithViz.cpp.o -c "/build/molmodel-3.0~svn842/tests/adhoc/TestSodiumWithViz.cpp" +[ 97%] Linking CXX executable ../../TestSerineWithViz +cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestSerineWithViz.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestSerineWithViz.dir/TestSerineWithViz.cpp.o -o ../../TestSerineWithViz -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 +make[3]: Leaving directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' +[ 97%] Built target TestSerineWithViz [ 98%] Linking CXX executable ../../TestWriteLargerPdb cd "/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf/tests/adhoc" && /usr/bin/cmake -E cmake_link_script CMakeFiles/TestWriteLargerPdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/molmodel-3.0~svn842=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -rdynamic CMakeFiles/TestWriteLargerPdb.dir/TestWriteLargerPdb.cpp.o -o ../../TestWriteLargerPdb -Wl,-rpath,"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" ../../libSimTKmolmodel.so.3.0 /usr/lib/arm-linux-gnueabihf/libSimTKsimbody.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKmath.so.3.6 /usr/lib/arm-linux-gnueabihf/libSimTKcommon.so.3.6 -lblas -llapack -lblas -llapack -lpthread -lrt -ldl -lm -lmmdb2 @@ -2252,7 +2323,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/molmodel-3.0\~svn842/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/molmodel-3.0\~svn842/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf' /usr/bin/cmake -S"/build/molmodel-3.0~svn842" -B"/build/molmodel-3.0~svn842/obj-arm-linux-gnueabihf" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2380,9 +2451,9 @@ dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'libsimtkmolmodel3.0-dbgsym' in '../libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_armhf.deb'. dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.0~svn842-2_armhf.deb'. dpkg-deb: building package 'libsimtkmolmodel3.0' in '../libsimtkmolmodel3.0_3.0~svn842-2_armhf.deb'. -dpkg-deb: building package 'libsimtkmolmodel3.0-dbgsym' in '../libsimtkmolmodel3.0-dbgsym_3.0~svn842-2_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../molmodel_3.0~svn842-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2390,12 +2461,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/13185/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/13185/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3804 and its subdirectories -I: Current time: Mon Jul 12 11:05:28 -12 2021 -I: pbuilder-time-stamp: 1626131128 +I: removing directory /srv/workspace/pbuilder/13185 and its subdirectories +I: Current time: Tue Jul 13 13:24:25 +14 2021 +I: pbuilder-time-stamp: 1626132265