Diff of the two buildlogs: -- --- b1/build.log 2021-08-16 21:25:27.896584361 +0000 +++ b2/build.log 2021-08-16 21:43:50.839211681 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Aug 16 08:01:43 -12 2021 -I: pbuilder-time-stamp: 1629144103 +I: Current time: Tue Aug 17 11:26:02 +14 2021 +I: pbuilder-time-stamp: 1629149162 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./libpwizlite_3.0.3-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.Tg_1bReS/trustedkeys.kbx': General error -gpgv: Signature made Tue Oct 20 21:21:24 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.7ZKk5cpa/trustedkeys.kbx': General error +gpgv: Signature made Wed Oct 21 23:21:24 2020 +14 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libpwizlite_3.0.3-1.dsc @@ -26,135 +26,169 @@ dpkg-source: info: unpacking libpwizlite_3.0.3-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13266/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/12016/tmp/hooks/D01_modify_environment starting +debug: Running on virt64c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/12016/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/12016/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='f0d8e5e1999545f59b395223289e81dc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13266' - PS1='# ' - PS2='> ' + INVOCATION_ID=e604933ae5f84538bf1c546ed6bcc119 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=12016 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.TBsZ9iiYFk/pbuilderrc_aMMl --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.TBsZ9iiYFk/b1 --logfile b1/build.log libpwizlite_3.0.3-1.dsc' - SUDO_GID='116' - SUDO_UID='112' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.TBsZ9iiYFk/pbuilderrc_uSyS --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.TBsZ9iiYFk/b2 --logfile b2/build.log --extrapackages usrmerge libpwizlite_3.0.3-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux cbxi4b 5.10.0-8-armmp #1 SMP Debian 5.10.46-4 (2021-08-03) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-arm64 #1 SMP Debian 5.10.46-4 (2021-08-03) aarch64 GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more - -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 14 21:30 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/13266/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Jul 29 09:09 more + -rwsr-xr-x 1 root root 34400 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 9824 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 17 11:26 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 14 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Jul 29 09:09 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/12016/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -301,7 +335,7 @@ Get: 91 http://deb.debian.org/debian bullseye/main armhf python3-roman all 2.0.0-5 [9064 B] Get: 92 http://deb.debian.org/debian bullseye/main armhf python3-docutils all 0.16+dfsg-4 [384 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] -Fetched 55.4 MB in 8s (6655 kB/s) +Fetched 55.4 MB in 5s (10.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -709,9 +743,42 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1011 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41471 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/libpwizlite-3.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpwizlite_3.0.3-1_source.changes +hostname: Name or service not known +I: Running cd /build/libpwizlite-3.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpwizlite_3.0.3-1_source.changes dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.3-1 dpkg-buildpackage: info: source distribution unstable @@ -794,480 +861,480 @@ rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 debian/libpwizlite.3.rst:20: (WARNING/2) Inline emphasis start-string without end-string. sh debian/make-included-headers-hierarchy.sh -baseName: enum.hpp -dirName: boost -'boost/enum.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum.hpp' -baseName: arbitrary_positional_facade.hpp -dirName: boost/iostreams -'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' -baseName: base64.hpp -dirName: boost/iostreams/filter -'boost/iostreams/filter/base64.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' -baseName: base.hpp -dirName: boost/enum -'boost/enum/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/base.hpp' baseName: iterator.hpp dirName: boost/enum 'boost/enum/iterator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/iterator.hpp' -baseName: macros.hpp -dirName: boost/enum -'boost/enum/macros.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/macros.hpp' baseName: bitfield.hpp dirName: boost/enum 'boost/enum/bitfield.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/bitfield.hpp' -baseName: mutexed_singleton.hpp -dirName: boost/utility -'boost/utility/mutexed_singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' +baseName: base.hpp +dirName: boost/enum +'boost/enum/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/base.hpp' +baseName: macros.hpp +dirName: boost/enum +'boost/enum/macros.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum/macros.hpp' +baseName: foreach_field.hpp +dirName: boost +'boost/foreach_field.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/foreach_field.hpp' baseName: thread_specific_singleton.hpp dirName: boost/utility 'boost/utility/thread_specific_singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' +baseName: mutexed_singleton.hpp +dirName: boost/utility +'boost/utility/mutexed_singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' baseName: singleton.hpp dirName: boost/utility 'boost/utility/singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/singleton.hpp' -baseName: restricted.hpp -dirName: boost/utility/detail -'boost/utility/detail/restricted.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' baseName: member_dereference.hpp dirName: boost/utility/detail 'boost/utility/detail/member_dereference.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' +baseName: restricted.hpp +dirName: boost/utility/detail +'boost/utility/detail/restricted.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' baseName: singleton_manager.hpp dirName: boost/utility/detail 'boost/utility/detail/singleton_manager.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' -baseName: cstdio.hpp +baseName: cstdlib.hpp dirName: boost/nowide -'boost/nowide/cstdio.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/cstdio.hpp' +'boost/nowide/cstdlib.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' baseName: windows.hpp dirName: boost/nowide 'boost/nowide/windows.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/windows.hpp' -baseName: cenv.hpp -dirName: boost/nowide -'boost/nowide/cenv.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/cenv.hpp' -baseName: config.hpp -dirName: boost/nowide -'boost/nowide/config.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/config.hpp' baseName: convert.hpp dirName: boost/nowide 'boost/nowide/convert.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/convert.hpp' -baseName: fstream.hpp +baseName: args.hpp dirName: boost/nowide -'boost/nowide/fstream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/fstream.hpp' +'boost/nowide/args.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/args.hpp' baseName: system.hpp dirName: boost/nowide 'boost/nowide/system.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/system.hpp' -baseName: iostream.hpp -dirName: boost/nowide -'boost/nowide/iostream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/iostream.hpp' baseName: stackstring.hpp dirName: boost/nowide 'boost/nowide/stackstring.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/stackstring.hpp' -baseName: args.hpp +baseName: config.hpp dirName: boost/nowide -'boost/nowide/args.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/args.hpp' -baseName: cstdlib.hpp +'boost/nowide/config.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/config.hpp' +baseName: cenv.hpp dirName: boost/nowide -'boost/nowide/cstdlib.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' +'boost/nowide/cenv.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/cenv.hpp' +baseName: fstream.hpp +dirName: boost/nowide +'boost/nowide/fstream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/fstream.hpp' +baseName: iostream.hpp +dirName: boost/nowide +'boost/nowide/iostream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/iostream.hpp' +baseName: cstdio.hpp +dirName: boost/nowide +'boost/nowide/cstdio.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/cstdio.hpp' baseName: filebuf.hpp dirName: boost/nowide 'boost/nowide/filebuf.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/nowide/filebuf.hpp' -baseName: foreach_field.hpp +baseName: enum.hpp dirName: boost -'boost/foreach_field.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/foreach_field.hpp' -baseName: Version.hpp -dirName: pwiz -'pwiz/Version.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/Version.hpp' +'boost/enum.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/enum.hpp' +baseName: arbitrary_positional_facade.hpp +dirName: boost/iostreams +'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' +baseName: base64.hpp +dirName: boost/iostreams/filter +'boost/iostreams/filter/base64.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' baseName: SpectrumList_Demux.hpp dirName: pwiz/analysis/spectrum_processing 'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' baseName: DemuxDataProcessingStrings.hpp dirName: pwiz/analysis/demux 'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -baseName: ChemistryData.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' -baseName: IsotopeEnvelopeEstimator.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -baseName: IsotopeCalculator.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' -baseName: IsotopeTable.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' -baseName: MZTolerance.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' -baseName: Ion.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/Ion.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' -baseName: Chemistry.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' -baseName: MzMobilityWindow.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' -baseName: gaussfilter.hpp -dirName: pwiz/utility/findmf/base/filter -'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' -baseName: gauss.hpp -dirName: pwiz/utility/findmf/base/filter/utilities -'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -baseName: preparedata.hpp -dirName: pwiz/utility/findmf/base/filter/utilities -'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -baseName: filter.hpp -dirName: pwiz/utility/findmf/base/filter -'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' -baseName: constants.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' -baseName: copyif.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' -baseName: base.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' -baseName: base.hpp -dirName: pwiz/utility/findmf/base/base/utilities -'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' -baseName: interpolation.hpp -dirName: pwiz/utility/findmf/base/base/utilities -'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -baseName: diff.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' -baseName: scale.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' -baseName: interpolate.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' -baseName: determinebinwidth.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -baseName: bin1d.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' -baseName: masscomparefunctors.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -baseName: determinebinwidth.hpp -dirName: pwiz/utility/findmf/base/resample/utilities -'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -baseName: breakspec.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' -baseName: Parabola.hpp +baseName: HouseholderQR.hpp dirName: pwiz/utility/math -'pwiz/utility/math/Parabola.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' +'pwiz/utility/math/HouseholderQR.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' +baseName: Types.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Types.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' baseName: LinearLeastSquares.hpp dirName: pwiz/utility/math 'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' +baseName: round.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/round.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/round.hpp' baseName: MatrixInverse.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatrixInverse.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' -baseName: LinearSolver.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/LinearSolver.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' -baseName: erf.hpp +baseName: MatchedFilter.hpp dirName: pwiz/utility/math -'pwiz/utility/math/erf.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' -baseName: Stats.hpp +'pwiz/utility/math/MatchedFilter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' +baseName: Parabola.hpp dirName: pwiz/utility/math -'pwiz/utility/math/Stats.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' +'pwiz/utility/math/Parabola.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' baseName: OrderedPair.hpp dirName: pwiz/utility/math 'pwiz/utility/math/OrderedPair.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' -baseName: HouseholderQR.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/HouseholderQR.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' -baseName: round.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/round.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/round.hpp' baseName: qr.hpp dirName: pwiz/utility/math 'pwiz/utility/math/qr.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' -baseName: Types.hpp +baseName: Stats.hpp dirName: pwiz/utility/math -'pwiz/utility/math/Types.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' -baseName: MatchedFilter.hpp +'pwiz/utility/math/Stats.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' +baseName: LinearSolver.hpp dirName: pwiz/utility/math -'pwiz/utility/math/MatchedFilter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' -baseName: Exception.hpp +'pwiz/utility/math/LinearSolver.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' +baseName: erf.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/erf.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' +baseName: masscomparefunctors.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' +baseName: breakspec.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' +baseName: determinebinwidth.hpp +dirName: pwiz/utility/findmf/base/resample/utilities +'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' +baseName: bin1d.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' +baseName: determinebinwidth.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' +baseName: base.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' +baseName: base.hpp +dirName: pwiz/utility/findmf/base/base/utilities +'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' +baseName: interpolation.hpp +dirName: pwiz/utility/findmf/base/base/utilities +'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' +baseName: diff.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' +baseName: interpolate.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' +baseName: copyif.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' +baseName: constants.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' +baseName: scale.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' +baseName: preparedata.hpp +dirName: pwiz/utility/findmf/base/filter/utilities +'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' +baseName: gauss.hpp +dirName: pwiz/utility/findmf/base/filter/utilities +'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' +baseName: gaussfilter.hpp +dirName: pwiz/utility/findmf/base/filter +'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' +baseName: filter.hpp +dirName: pwiz/utility/findmf/base/filter +'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' +baseName: String.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Exception.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' -baseName: TabReader.hpp +'pwiz/utility/misc/String.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' +baseName: IntegerSet.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/TabReader.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' -baseName: random_access_compressed_ifstream.hpp +'pwiz/utility/misc/IntegerSet.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' +baseName: MSIHandler.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' -baseName: Std.hpp +'pwiz/utility/misc/MSIHandler.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' +baseName: Container.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Std.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' -baseName: Once.hpp +'pwiz/utility/misc/Container.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' +baseName: IterationListener.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Once.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' -baseName: Timer.hpp +'pwiz/utility/misc/IterationListener.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' +baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Timer.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' -baseName: BinaryData.hpp +'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' +baseName: unit.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/BinaryData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' +'pwiz/utility/misc/unit.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' baseName: SHA1Calculator.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' baseName: Stream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Stream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' -baseName: Base64.hpp +baseName: Image.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Base64.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' -baseName: virtual_map.hpp +'pwiz/utility/misc/Image.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' +baseName: Filesystem.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/virtual_map.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' +'pwiz/utility/misc/Filesystem.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' +baseName: Timer.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/Timer.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' +baseName: VendorReaderTestHarness.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' +baseName: Once.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/Once.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' +baseName: almost_equal.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/almost_equal.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' baseName: optimized_lexical_cast.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' -baseName: shared_map.hpp +baseName: BinaryData.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/shared_map.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' -baseName: Export.hpp +'pwiz/utility/misc/BinaryData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' +baseName: Base64.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Export.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' -baseName: Environment.hpp +'pwiz/utility/misc/Base64.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' +baseName: endian.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Environment.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' -baseName: ClickwrapPrompter.hpp +'pwiz/utility/misc/endian.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' +baseName: DateTime.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' -baseName: MSIHandler.hpp +'pwiz/utility/misc/DateTime.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' +baseName: Exception.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/MSIHandler.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' +'pwiz/utility/misc/Exception.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' +baseName: random_access_compressed_ifstream.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' baseName: COMInitializer.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/COMInitializer.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' -baseName: Filesystem.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Filesystem.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' baseName: cpp_cli_utilities.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' -baseName: VendorReaderTestHarness.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' -baseName: automation_vector.h -dirName: pwiz/utility/misc -'pwiz/utility/misc/automation_vector.h' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' -baseName: String.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/String.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' -baseName: IterationListener.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/IterationListener.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' -baseName: Container.hpp +baseName: Singleton.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Container.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' -baseName: IntegerSet.hpp +'pwiz/utility/misc/Singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' +baseName: mru_list.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/IntegerSet.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' -baseName: SHA1_ostream.hpp +'pwiz/utility/misc/mru_list.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' +baseName: Environment.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' -baseName: almost_equal.hpp +'pwiz/utility/misc/Environment.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' +baseName: virtual_map.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/almost_equal.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' -baseName: DateTime.hpp +'pwiz/utility/misc/virtual_map.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' +baseName: automation_vector.h dirName: pwiz/utility/misc -'pwiz/utility/misc/DateTime.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' -baseName: unit.hpp +'pwiz/utility/misc/automation_vector.h' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' +baseName: Export.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/unit.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' -baseName: Image.hpp +'pwiz/utility/misc/Export.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' +baseName: Std.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Image.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' +'pwiz/utility/misc/Std.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' baseName: SHA1.h dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1.h' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' -baseName: Singleton.hpp +baseName: SHA1_ostream.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Singleton.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' -baseName: mru_list.hpp +'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' +baseName: shared_map.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/mru_list.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' +'pwiz/utility/misc/shared_map.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' +baseName: TabReader.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/TabReader.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' -baseName: endian.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/endian.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' baseName: SAXParser.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' baseName: XMLWriter.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' -baseName: CVTranslator.hpp -dirName: pwiz/data/common -'pwiz/data/common/CVTranslator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' -baseName: obo.hpp -dirName: pwiz/data/common -'pwiz/data/common/obo.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/obo.hpp' +baseName: MzMobilityWindow.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' +baseName: IsotopeCalculator.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' +baseName: Ion.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/Ion.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' +baseName: IsotopeEnvelopeEstimator.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' +baseName: Chemistry.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' +baseName: IsotopeTable.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' +baseName: MZTolerance.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' +baseName: ChemistryData.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' +baseName: Version.hpp +dirName: pwiz +'pwiz/Version.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/Version.hpp' baseName: Unimod.hpp dirName: pwiz/data/common 'pwiz/data/common/Unimod.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' -baseName: Index.hpp +baseName: ParamTypes.hpp dirName: pwiz/data/common -'pwiz/data/common/Index.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/Index.hpp' +'pwiz/data/common/ParamTypes.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' baseName: diff_std.hpp dirName: pwiz/data/common 'pwiz/data/common/diff_std.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' -baseName: cv.hpp +baseName: Index.hpp dirName: pwiz/data/common -'pwiz/data/common/cv.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/cv.hpp' -baseName: ParamTypes.hpp +'pwiz/data/common/Index.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/Index.hpp' +baseName: BinaryIndexStream.hpp dirName: pwiz/data/common -'pwiz/data/common/ParamTypes.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' +'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' baseName: MemoryIndex.hpp dirName: pwiz/data/common 'pwiz/data/common/MemoryIndex.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' -baseName: BinaryIndexStream.hpp +baseName: cv.hpp dirName: pwiz/data/common -'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' -baseName: BinaryDataEncoder.hpp +'pwiz/data/common/cv.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/cv.hpp' +baseName: obo.hpp +dirName: pwiz/data/common +'pwiz/data/common/obo.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/obo.hpp' +baseName: CVTranslator.hpp +dirName: pwiz/data/common +'pwiz/data/common/CVTranslator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' +baseName: TextWriter.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' -baseName: SpectrumListCache.hpp +'pwiz/data/msdata/TextWriter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' +baseName: Serializer_MGF.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' -baseName: References.hpp +'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' +baseName: SpectrumListWrapper.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/References.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' -baseName: Serializer_mzML.hpp +'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' +baseName: Index_mzML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' -baseName: Serializer_mzXML.hpp +'pwiz/data/msdata/Index_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' +baseName: RAMPAdapter.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' -baseName: Serializer_MSn.hpp +'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' +baseName: SpectrumList_mz5.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' +'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' +baseName: SpectrumList_mzML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' baseName: MSDataMerger.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' -baseName: Diff.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Diff.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' -baseName: SpectrumListWrapper.hpp +baseName: Serializer_mz5.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' -baseName: SpectrumWorkerThreads.hpp +'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' +baseName: MSDataFile.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' -baseName: examples.hpp +'pwiz/data/msdata/MSDataFile.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' +baseName: IO.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/examples.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' -baseName: Version.hpp +'pwiz/data/msdata/IO.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' +baseName: ChromatogramListBase.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Version.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' -baseName: Serializer_MGF.hpp +'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' +baseName: ChromatogramList_mzML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' -baseName: SpectrumList_mz5.hpp +'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' +baseName: LegacyAdapter.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' -baseName: TextWriter.hpp +'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' +baseName: SpectrumList_mzXML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/TextWriter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' +'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' baseName: SpectrumList_MSn.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' -baseName: SHA1OutputObserver.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' -baseName: MSData.hpp +baseName: SpectrumIterator.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MSData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' -baseName: LegacyAdapter.hpp +'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' +baseName: BinaryDataEncoder.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' -baseName: ChromatogramList_mzML.hpp +'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' +baseName: References.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' -baseName: SpectrumListBase.hpp +'pwiz/data/msdata/References.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' +baseName: Diff.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' -baseName: DefaultReaderList.hpp +'pwiz/data/msdata/Diff.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' +baseName: ChromatogramList_mz5.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' -baseName: RAMPAdapter.hpp +'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' +baseName: SpectrumWorkerThreads.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' -baseName: MSNumpress.hpp +'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' +baseName: Serializer_MSn.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MSNumpress.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' -baseName: SpectrumInfo.hpp +'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' +baseName: DefaultReaderList.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' -baseName: SpectrumIterator.hpp +'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' +baseName: SpectrumList_BTDX.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' +'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' baseName: MemoryMRUCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' -baseName: IO.hpp +baseName: Serializer_mzML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/IO.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' -baseName: Serializer_mz5.hpp +'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' +baseName: SpectrumList_MGF.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' -baseName: MSDataFile.hpp +'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' +baseName: Version.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MSDataFile.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' -baseName: ChromatogramList_mz5.hpp +'pwiz/data/msdata/Version.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' +baseName: SpectrumInfo.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' -baseName: SpectrumList_mzML.hpp +'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' +baseName: Serializer_mzXML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' -baseName: SpectrumList_MGF.hpp +'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' +baseName: SpectrumListCache.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' -baseName: SpectrumList_mzXML.hpp +'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' +baseName: SpectrumListBase.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' -baseName: ChromatogramListBase.hpp +'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' +baseName: SHA1OutputObserver.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' -baseName: Index_mzML.hpp +'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' +baseName: MSData.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Index_mzML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' +'pwiz/data/msdata/MSData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' baseName: Reader.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Reader.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' -baseName: SpectrumList_BTDX.hpp +baseName: MSNumpress.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' -baseName: CalibrationParameters.hpp +'pwiz/data/msdata/MSNumpress.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' +baseName: examples.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/examples.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' +baseName: SampleDatum.hpp dirName: pwiz/data/misc -'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' +'pwiz/data/misc/SampleDatum.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' baseName: MinimumPepXML.hpp dirName: pwiz/data/misc 'pwiz/data/misc/MinimumPepXML.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' +baseName: FrequencyData.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/FrequencyData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' baseName: PeakData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/PeakData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' +baseName: CalibrationParameters.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' baseName: FrequencyDataTestData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' -baseName: FrequencyData.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/FrequencyData.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' -baseName: SampleDatum.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/SampleDatum.hpp' -> '/build/libpwizlite-3.0.3/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' make[1]: Leaving directory '/build/libpwizlite-3.0.3' dh_auto_build -O--build-system=cmake - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/libpwizlite-3.0.3 -B/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/CMakeFiles /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -1279,24 +1346,26 @@ cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.3 /build/libpwizlite-3.0.3/src /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf' cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libpwizlite-3.0.3 /build/libpwizlite-3.0.3/src /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake --color= -Dependee "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-shared.dir/depend.internal". -Dependee "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-shared.dir/depend.internal". Dependee "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-static.dir/DependInfo.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-static.dir/depend.internal". Dependee "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-static.dir/depend.internal". +Dependee "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-shared.dir/depend.internal". +Dependee "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src/CMakeFiles/pwizlite-shared.dir/depend.internal". +Scanning dependencies of target pwizlite-static +make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf' +make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build Scanning dependencies of target pwizlite-shared make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf' -Scanning dependencies of target pwizlite-static -make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf' -make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make[3]: Entering directory '/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf' -[ 1%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp +[ 1%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp [ 2%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp -[ 3%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp +[ 3%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o +[ 5%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -1339,61 +1408,6 @@ 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 5%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp -[ 6%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] - 549 | if (inCDATA) - | ^~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] @@ -1404,14 +1418,20 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 6%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:29: + from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/XMLWriter.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 7%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = double; pwiz::util::BinaryData::const_reference = const double&; pwiz::util::BinaryData::size_type = unsigned int]': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here @@ -1603,28 +1623,71 @@ /usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 960 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o +[ 7%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp +[ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp +[ 10%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 10%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp [ 11%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] - 549 | if (inCDATA) - | ^~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:82: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] + 549 | if (inCDATA) + | ^~ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { @@ -1639,6 +1702,8 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 12%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const string&, bool)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:261:24: warning: unused parameter 'filepath' [-Wunused-parameter] 261 | const std::string& filepath, @@ -1646,12 +1711,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:262:10: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] 262 | bool closeMemoryMappedSections) noexcept(true) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -[ 12%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp -[ 14%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp -[ 15%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -1662,242 +1721,44 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -[ 16%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +[ 14%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1.cpp +[ 15%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:27: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 17%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o +[ 16%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp -[ 19%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, pwiz::minimxml::SAXParser::Handler&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized in this function [-Wmaybe-uninitialized] + 549 | if (inCDATA) + | ^~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp:33: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = double; pwiz::util::BinaryData::const_reference = const double&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = double; pwiz::util::BinaryData::reference = double&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = float; pwiz::util::BinaryData::const_reference = const float&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = float; pwiz::util::BinaryData::reference = float&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = long long int; pwiz::util::BinaryData::const_reference = const long long int&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 256 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = long long int; pwiz::util::BinaryData::reference = long long int&; pwiz::util::BinaryData::size_type = unsigned int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] - 263 | if (index < 0 || index >= size()) - | ~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long long int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 57 | Impl(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long long int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] - 71 | Impl& operator=(void* cliNumericArray) - | ~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long long int]': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 285 | begin_ = iterator(binaryData, true); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] - 286 | end_ = iterator(binaryData, false); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' - 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 287 | cbegin_ = const_iterator(binaryData, true); - | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] - 288 | cend_ = const_iterator(binaryData, false); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' - 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} - | ^~~~~~~~~~~~~~ -[ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o +[ 17%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp +[ 19%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ -[ 21%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp +[ 20%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.hpp:29, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:25: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 509 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void pwiz::util::BinaryData::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = double]': -/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 960 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /usr/include/c++/10/vector:72, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 509 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void pwiz::util::BinaryData::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = long long int]': -/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 960 | _M_fill_insert(end(), __new_size - size(), __x); - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 23%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.hpp:28, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -1915,13 +1776,11 @@ 524 | bool useWorkerThreads) const | ~~~~~^~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp:26: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 24%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/functional:62, from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, @@ -1944,24 +1803,38 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp -[ 26%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o +In file included from /usr/include/c++/10/vector:72, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:27: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumInfo::PrecursorInfo&}; _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:27: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void pwiz::msdata::SpectrumInfo::update(const pwiz::msdata::Spectrum&, bool)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 21%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:82: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] - 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] - 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +[ 23%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp +[ 24%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp +[ 25%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2003,14 +1876,49 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:29: +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:29: +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); @@ -2071,18 +1979,6 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2132:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:27: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumInfo::PrecursorInfo&}; _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2405:47: warning: unused parameter 'position' [-Wunused-parameter] 2405 | stream_offset position) @@ -2098,63 +1994,19 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2754:47: warning: unused parameter 'position' [-Wunused-parameter] 2754 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:27: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void pwiz::msdata::SpectrumInfo::update(const pwiz::msdata::Spectrum&, bool)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 28%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp -[ 29%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.cpp:27: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 26%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] 121 | stream_offset position) @@ -2167,69 +2019,6 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] 356 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /usr/include/c++/10/vector:72, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentity&}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const string&, bool)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:261:24: warning: unused parameter 'filepath' [-Wunused-parameter] - 261 | const std::string& filepath, - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:262:10: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] - 262 | bool closeMemoryMappedSections) noexcept(true) { - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: -/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:26: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::ChromatogramList&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::SpectrumList&, const pwiz::msdata::MSData&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*, bool)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp -[ 32%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2272,31 +2061,219 @@ 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 33%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1.cpp -[ 34%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = double; pwiz::util::BinaryData::const_reference = const double&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = double; pwiz::util::BinaryData::reference = double&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:470:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = double]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = double]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = float; pwiz::util::BinaryData::const_reference = const float&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = float; pwiz::util::BinaryData::reference = float&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = float]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = float]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = float]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:471:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = float]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = float]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) const [with T = long long int; pwiz::util::BinaryData::const_reference = const long long int&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:256:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 256 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'T& pwiz::util::BinaryData::at(pwiz::util::BinaryData::size_type) [with T = long long int; pwiz::util::BinaryData::reference = long long int&; pwiz::util::BinaryData::size_type = unsigned int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:263:19: warning: comparison of unsigned expression in '< 0' is always false [-Wtype-limits] + 263 | if (index < 0 || index >= size()) + | ~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl::Impl(void*) [with T = long long int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:57:16: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 57 | Impl(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'pwiz::util::BinaryData::Impl& pwiz::util::BinaryData::Impl::operator=(void*) [with T = long long int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:71:27: warning: unused parameter 'cliNumericArray' [-Wunused-parameter] + 71 | Impl& operator=(void* cliNumericArray) + | ~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp: In instantiation of 'void pwiz::util::BinaryData::Impl::cacheIterators(pwiz::util::BinaryData&) [with T = long long int]': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:472:30: required from here +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:285:16: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 285 | begin_ = iterator(binaryData, true); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:286:14: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::iterator& pwiz::util::BinaryData::iterator::operator=(const pwiz::util::BinaryData::iterator&)' is deprecated [-Wdeprecated-copy] + 286 | end_ = iterator(binaryData, false); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:113:9: note: because 'pwiz::util::BinaryData::iterator' has user-provided 'pwiz::util::BinaryData::iterator::iterator(const pwiz::util::BinaryData::iterator&) [with T = long long int]' + 113 | iterator(const iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:287:17: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 287 | cbegin_ = const_iterator(binaryData, true); + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:288:15: warning: implicitly-declared 'constexpr pwiz::util::BinaryData::const_iterator& pwiz::util::BinaryData::const_iterator::operator=(const pwiz::util::BinaryData::const_iterator&)' is deprecated [-Wdeprecated-copy] + 288 | cend_ = const_iterator(binaryData, false); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:79:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long long int]' + 79 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} + | ^~~~~~~~~~~~~~ +[ 28%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp -[ 35%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp -[ 37%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp -[ 38%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp +In file included from /usr/include/c++/10/vector:72, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 509 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void pwiz::util::BinaryData::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = double]': +/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 960 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 509 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.cpp:24: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void pwiz::util::BinaryData::_resize(pwiz::util::BinaryData::size_type, const T&) [with T = long long int]': +/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 960 | _M_fill_insert(end(), __new_size - size(), __x); + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 29%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp +In file included from /usr/include/c++/10/vector:72, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentity&}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2338,6 +2315,19 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: +/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -2361,7 +2351,39 @@ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp:33: + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Base64.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 30%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp +[ 32%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp +[ 33%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp +In file included from /usr/include/c++/10/vector:72, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:26: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::ChromatogramList&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::SpectrumList&, const pwiz::msdata::MSData&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*, bool)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:82: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); @@ -2391,8 +2413,14 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] + 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::chunky_streambuf::my_seekg(boost::iostreams::stream_offset, std::ios_base::seekdir, std::ios_base::openmode)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] + 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:35: /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] @@ -2407,44 +2435,26 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:27: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 41%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o +[ 34%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.cpp -[ 42%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp -[ 43%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o +[ 35%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp +[ 37%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 114 | } else if (init == mask) { - | ~~~~~^~~~~~~ -[ 44%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o +[ 38%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp -[ 46%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:38: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2486,22 +2496,12 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] - 524 | bool useWorkerThreads) const - | ~~~~~^~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ @@ -2563,43 +2563,22 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:875:45: warning: unused parameter 'position' [-Wunused-parameter] 875 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.hpp:26, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:25: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'size_t pwiz::msdata::{anonymous}::getChargeStates(const pwiz::msdata::SelectedIon&, std::vector&, std::vector >&)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized in this function [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized in this function [-Wmaybe-uninitialized] -[ 47%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp -[ 48%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:29: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const string&, bool)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:261:24: warning: unused parameter 'filepath' [-Wunused-parameter] + 261 | const std::string& filepath, + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.cpp:262:10: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] + 262 | bool closeMemoryMappedSections) noexcept(true) { + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +[ 41%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -2618,6 +2597,21 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1262:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] 1262 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const | ~~~~~^~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const string&)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:575:13: warning: this statement may fall through [-Wimplicit-fallthrough=] + 575 | if (id.find("controllerType=0 controllerNumber=1") != 0) + | ^~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:580:9: note: here + 580 | case MS_Bruker_Agilent_YEP_nativeID_format: + | ^~~~ +[ 42%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp:31: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/functional:62, from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, @@ -2651,30 +2645,6 @@ from /usr/include/c++/10/algorithm:74, from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:27: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumInfo::PrecursorInfo&}; _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:27: -/usr/include/c++/10/bits/stl_vector.h: In member function 'void pwiz::msdata::SpectrumInfo::update(const pwiz::msdata::Spectrum&, bool)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: @@ -2686,145 +2656,20 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const string&)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:575:13: warning: this statement may fall through [-Wimplicit-fallthrough=] - 575 | if (id.find("controllerType=0 controllerNumber=1") != 0) - | ^~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:580:9: note: here - 580 | case MS_Bruker_Agilent_YEP_nativeID_format: - | ^~~~ -[ 50%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:29: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] - 81 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter 'position' [-Wunused-parameter] - 132 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter 'position' [-Wunused-parameter] - 191 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter 'position' [-Wunused-parameter] - 263 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 500 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter 'position' [-Wunused-parameter] - 501 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 693 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter 'position' [-Wunused-parameter] - 694 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter 'position' [-Wunused-parameter] - 966 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter 'position' [-Wunused-parameter] - 1079 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 1355 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter 'position' [-Wunused-parameter] - 1356 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) - | ^~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1660:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 1660 | bool zlib = false; // Handle numpress+zlib - | ^~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2132:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2405:47: warning: unused parameter 'position' [-Wunused-parameter] - 2405 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2506:47: warning: unused parameter 'position' [-Wunused-parameter] - 2506 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2836:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2836 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2754:47: warning: unused parameter 'position' [-Wunused-parameter] - 2754 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp:31: + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 52%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IntegerSet.cpp:307:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +[ 43%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp -[ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp +[ 44%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2851,12 +2696,16 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 46%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 47%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const string&, const string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:74:119: warning: unused parameter 'config' [-Wunused-parameter] 74 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const @@ -2867,28 +2716,18 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 55%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/SHA1Calculator.cpp:33: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 48%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp -In file included from /usr/include/c++/10/vector:72, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:26: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::ChromatogramList&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In function 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::SpectrumList&, const pwiz::msdata::MSData&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*, bool)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 50%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp +[ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -2943,39 +2782,6 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:202:47: warning: unused parameter 'position' [-Wunused-parameter] 202 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /usr/include/c++/10/vector:72, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 -/usr/include/c++/10/bits/vector.tcc: In member function 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::createIndexText()': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::parseSpectrumText(pwiz::msdata::Spectrum&, bool) const': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::createIndexBinary()': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp -[ 57%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp -[ 58%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:25: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -3046,49 +2852,14 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter 'position' [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:25: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MGF.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); @@ -3113,78 +2884,81 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] - 121 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] - 162 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] - 356 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 +[ 52%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp /usr/include/c++/10/bits/vector.tcc: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o +/usr/include/c++/10/bits/vector.tcc: In member function 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::createIndexText()': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::parseSpectrumText(pwiz::msdata::Spectrum&, bool) const': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 53%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp +/usr/include/c++/10/bits/vector.tcc: In member function 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::createIndexBinary()': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp:26: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /usr/include/c++/10/vector:72, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentity&}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 - 426 | vector<_Tp, _Alloc>:: - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/10/vector:67, - from /usr/include/c++/10/functional:62, - from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, - from /usr/include/c++/10/algorithm:74, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: -/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 1198 | _M_realloc_insert(end(), __x); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ -[ 61%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o +[ 55%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp -[ 62%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp -[ 64%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:26: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSNumpress.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp +[ 57%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 114 | } else if (init == mask) { + | ~~~~~^~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 58%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -3254,6 +3028,12 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } | ~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:25: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const string&, const string&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:122:68: warning: unused parameter 'filename' [-Wunused-parameter] 122 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const @@ -3345,13 +3125,190 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:480:51: warning: unused parameter 'config' [-Wunused-parameter] 480 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:524:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] + 524 | bool useWorkerThreads) const + | ~~~~~^~~~~~~~~~~~~~~~ +[ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp +In file included from /usr/include/c++/10/vector:72, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.hpp:26, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_MSn.cpp:25: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In function 'size_t pwiz::msdata::{anonymous}::getChargeStates(const pwiz::msdata::SelectedIon&, std::vector&, std::vector >&)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:72, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'void pwiz::msdata::{anonymous}::SpectrumList_MGFImpl::createIndex()': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 61%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] + 421 | const SpectrumListPtr spectrumListPtr, + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:975:47: warning: unused parameter 'position' [-Wunused-parameter] + 975 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1104:47: warning: unused parameter 'position' [-Wunused-parameter] + 1104 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1185:45: warning: unused parameter 'position' [-Wunused-parameter] + 1185 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1233:47: warning: unused parameter 'position' [-Wunused-parameter] + 1233 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1301:47: warning: unused parameter 'position' [-Wunused-parameter] + 1301 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 62%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp +[ 64%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /usr/include/c++/10/vector:72, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:27: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumInfo::PrecursorInfo&}; _Tp = pwiz::msdata::SpectrumInfo::PrecursorInfo; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumInfo.cpp:27: +/usr/include/c++/10/bits/stl_vector.h: In member function 'void pwiz::msdata::SpectrumInfo::update(const pwiz::msdata::Spectrum&, bool)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 65%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:34: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:24548: +/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] + 102 | for (int o=0;o(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:81:47: warning: unused parameter 'position' [-Wunused-parameter] + 81 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:132:47: warning: unused parameter 'position' [-Wunused-parameter] + 132 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:191:47: warning: unused parameter 'position' [-Wunused-parameter] + 191 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:263:47: warning: unused parameter 'position' [-Wunused-parameter] + 263 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:500:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 500 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:501:47: warning: unused parameter 'position' [-Wunused-parameter] + 501 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:693:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 693 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:694:47: warning: unused parameter 'position' [-Wunused-parameter] + 694 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:966:47: warning: unused parameter 'position' [-Wunused-parameter] + 966 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1079:47: warning: unused parameter 'position' [-Wunused-parameter] + 1079 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1355:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 1355 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1356:47: warning: unused parameter 'position' [-Wunused-parameter] + 1356 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In function 'void pwiz::msdata::IO::writeBinaryDataArray(pwiz::minimxml::XMLWriter&, const BinaryDataArrayType&, const pwiz::msdata::BinaryDataEncoder::Config&)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1657:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) + | ^~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:1660:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 1660 | bool zlib = false; // Handle numpress+zlib + | ^~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2132:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2405:47: warning: unused parameter 'position' [-Wunused-parameter] + 2405 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2506:47: warning: unused parameter 'position' [-Wunused-parameter] + 2506 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2836:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 2836 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:2754:47: warning: unused parameter 'position' [-Wunused-parameter] + 2754 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 66%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp +[ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp +[ 69%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: + from /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 65%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:133:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 133 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:135:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 135 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:136:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 136 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:34: warning: unused parameter 'key' [-Wunused-parameter] + 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:44: warning: unused parameter 'value' [-Wunused-parameter] + 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:56: warning: unused parameter 'cvid' [-Wunused-parameter] + 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:27: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const string&, const string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] + 40 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] + 88 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': +/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] + 124 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:29: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] + 121 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] + 162 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] + 356 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 70%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp +[ 71%] Linking CXX shared library libpwizlite.so +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.3 CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_thread.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libboost_atomic.so.1.74.0 -lpthread +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.3 libpwizlite.so.3 libpwizlite.so +make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf' +[ 71%] Built target pwizlite-shared +[ 73%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -3436,53 +3574,40 @@ 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:31: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, - from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, - from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, - from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, - from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.hpp:33, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: -/usr/include/boost/bind.hpp: At global scope: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/functional:62, from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, from /usr/include/c++/10/algorithm:74, from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: -/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': -/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.cpp:26: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -[ 66%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp -/usr/include/c++/10/bits/vector.tcc: In member function 'void pwiz::msdata::{anonymous}::SpectrumList_MGFImpl::createIndex()': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 +/usr/include/c++/10/bits/vector.tcc: In function 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::ChromatogramList&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: +/usr/include/c++/10/bits/vector.tcc: In function 'void pwiz::msdata::IO::write(pwiz::minimxml::XMLWriter&, const pwiz::msdata::SpectrumList&, const pwiz::msdata::MSData&, const pwiz::msdata::BinaryDataEncoder::Config&, std::vector >*, const pwiz::util::IterationListenerRegistry*, bool)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 74%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -3517,48 +3642,58 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -[ 67%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] - 421 | const SpectrumListPtr spectrumListPtr, - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:975:47: warning: unused parameter 'position' [-Wunused-parameter] - 975 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1104:47: warning: unused parameter 'position' [-Wunused-parameter] - 1104 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1185:45: warning: unused parameter 'position' [-Wunused-parameter] - 1185 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1233:47: warning: unused parameter 'position' [-Wunused-parameter] - 1233 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1301:47: warning: unused parameter 'position' [-Wunused-parameter] - 1301 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Version.cpp -[ 70%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o +[ 75%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp:28: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:30: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /usr/include/c++/10/vector:72, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: +/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const pwiz::msdata::SpectrumIdentity&}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': +/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 + 426 | vector<_Tp, _Alloc>:: + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, + from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, + from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, + from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, + from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.hpp:33, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: +/usr/include/boost/bind.hpp: At global scope: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/10/vector:67, + from /usr/include/c++/10/functional:62, + from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, + from /usr/include/c++/10/algorithm:74, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/BinaryData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: +/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 1198 | _M_realloc_insert(end(), __x); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ +[ 76%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.hpp:30, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSDataFile.cpp:26: @@ -3598,78 +3733,10 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 71%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp -[ 73%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -Dpwizlite_shared_EXPORTS -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:34: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:29: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:133:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 133 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:135:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 135 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:136:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 136 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:34: warning: unused parameter 'key' [-Wunused-parameter] - 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:44: warning: unused parameter 'value' [-Wunused-parameter] - 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp:141:56: warning: unused parameter 'cvid' [-Wunused-parameter] - 141 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:24548: -/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] - 102 | for (int o=0;o(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const string&, const string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] - 40 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] - 88 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] - 124 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -[ 76%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o +[ 78%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp -[ 78%] Linking CXX shared library libpwizlite.so -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwizlite-shared.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libpwizlite.so.3 -o libpwizlite.so.3.0.3 CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/XMLWriter.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/minimxml/SAXParser.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IterationListener.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Base64.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MGF.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_MSn.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/IO.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Version.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSDataFile.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSData.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Reader.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Index_mzML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/DefaultReaderList.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_filesystem.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_thread.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libboost_atomic.so.1.74.0 -lpthread [ 79%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libpwizlite.so.3.0.3 libpwizlite.so.3 libpwizlite.so -make[3]: Leaving directory '/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf' -[ 79%] Built target pwizlite-shared [ 80%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, @@ -3678,6 +3745,24 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1151:56: warning: unused parameter 'msg' [-Wunused-parameter] + 1151 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const + | ~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1195:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1195 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1262:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1262 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/IO.hpp:32, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': @@ -3720,29 +3805,18 @@ 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual void pwiz::msdata::SpectrumList::warn_once(const char*) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1151:56: warning: unused parameter 'msg' [-Wunused-parameter] - 1151 | PWIZ_API_DECL void SpectrumList::warn_once(const char *msg) const - | ~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1195:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1195 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:1262:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1262 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const string&)': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:575:13: warning: this statement may fall through [-Wimplicit-fallthrough=] + 575 | if (id.find("controllerType=0 controllerNumber=1") != 0) + | ^~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:580:9: note: here + 580 | case MS_Bruker_Agilent_YEP_nativeID_format: + | ^~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ @@ -3804,13 +3878,6 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:875:45: warning: unused parameter 'position' [-Wunused-parameter] 875 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const string&)': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:575:13: warning: this statement may fall through [-Wimplicit-fallthrough=] - 575 | if (id.find("controllerType=0 controllerNumber=1") != 0) - | ^~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/MSData.cpp:580:9: note: here - 580 | case MS_Bruker_Agilent_YEP_nativeID_format: - | ^~~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteCount' may be used uninitialized in this function [-Wmaybe-uninitialized] 302 | filterArray(byteBuffer, byteCount,compressed); @@ -3818,12 +3885,50 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/BinaryDataEncoder.cpp:302:37: warning: 'byteBuffer' may be used uninitialized in this function [-Wmaybe-uninitialized] [ 82%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp +[ 83%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/LegacyAdapter.cpp:31: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /usr/include/c++/10/bits/stl_algobase.h:64, + from /usr/include/c++/10/memory:63, + from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, + from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: +/usr/include/c++/10/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename std::__strip_reference_wrapper::type>::__type = double; typename std::__strip_reference_wrapper::type>::__type = double]': +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:157: required from here +/usr/include/c++/10/bits/stl_pair.h:567:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 + 567 | make_pair(_T1&& __x, _T2&& __y) + | ^~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:27: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const string&, const string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:74:119: warning: unused parameter 'config' [-Wunused-parameter] + 74 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/functional:62, from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, @@ -3868,60 +3973,26 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 83%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /usr/include/c++/10/bits/stl_algobase.h:64, - from /usr/include/c++/10/memory:63, - from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35, - from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:28, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: -/usr/include/c++/10/bits/stl_pair.h: In instantiation of 'constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double; typename std::__strip_reference_wrapper::type>::__type = double; typename std::__strip_reference_wrapper::type>::__type = double]': -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:34:157: required from here -/usr/include/c++/10/bits/stl_pair.h:567:5: note: parameter passing for argument of type 'std::pair' when C++17 is enabled changed to match C++14 in GCC 10.1 - 567 | make_pair(_T1&& __x, _T2&& __y) - | ^~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.hpp:29, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp [ 85%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:27: +[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const string&, const string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/libpwizlite-3.0.3/src/pwiz/data/msdata/Reader.cpp:74:119: warning: unused parameter 'config' [-Wunused-parameter] - 74 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ +[ 88%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': /build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MSn.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:32: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -3963,8 +4034,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzML.cpp:201:51: warning: unused parameter 'attributes' [-Wunused-parameter] 201 | const Attributes& attributes, @@ -3978,8 +4047,6 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 88%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -4044,6 +4111,14 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Index_mzML.cpp:197:47: warning: unused parameter 'position' [-Wunused-parameter] 197 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 89%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/functional:62, from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, @@ -4068,6 +4143,12 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/10/bits/vector.tcc: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 + 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 91%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/functional:62, from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, @@ -4081,14 +4162,10 @@ /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ -/usr/include/c++/10/bits/vector.tcc: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 - 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pwiz::msdata::SpectrumIdentity}; _Tp = pwiz::msdata::SpectrumIdentity; _Alloc = std::allocator]': /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); @@ -4097,8 +4174,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 89%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp /usr/include/c++/10/bits/vector.tcc: In member function 'void pwiz::msdata::{anonymous}::SpectrumList_MSnImpl::parseSpectrumText(pwiz::msdata::Spectrum&, bool) const': /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); @@ -4107,14 +4182,6 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 91%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/SpectrumList_MGF.cpp -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/References.cpp:26: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ [ 92%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, @@ -4123,14 +4190,57 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ +[ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp +[ 94%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:26: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ -[ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -4192,6 +4302,12 @@ /build/libpwizlite-3.0.3/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, + from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:29: /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const string&, const string&) const': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] @@ -4291,53 +4407,6 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/DefaultReaderList.cpp:480:51: warning: unused parameter 'config' [-Wunused-parameter] 480 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const pwiz::util::IterationListener::UpdateMessage&)': -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const string&, const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/libpwizlite-3.0.3/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Filesystem.hpp:34, - from /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:33: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:421:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] 421 | const SpectrumListPtr spectrumListPtr, @@ -4362,6 +4431,12 @@ /build/libpwizlite-3.0.3/src/pwiz/data/msdata/Serializer_mzXML.cpp:1301:47: warning: unused parameter 'position' [-Wunused-parameter] 1301 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, + from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp:28: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: +/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] + 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); + | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/c++/10/vector:72, from /usr/include/c++/10/functional:62, from /usr/include/c++/10/pstl/glue_algorithm_defs.h:13, @@ -4379,10 +4454,12 @@ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 94%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp [ 96%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/cv.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp +[ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/CVTranslator.cpp +[ 98%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o +cd /build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_THREAD_DYN_LINK -DWITHOUT_MZ5 -I/build/libpwizlite-3.0.3/obj-arm-linux-gnueabihf/src -I/build/libpwizlite-3.0.3/src -I/build/libpwizlite-3.0.3/src/boost -g -O2 -fdebug-prefix-map=/build/libpwizlite-3.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -std=gnu++17 -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/diff_std.cpp.o -c /build/libpwizlite-3.0.3/src/pwiz/data/common/diff_std.cpp In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:34: /build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: @@ -4390,19 +4467,6 @@ 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); | ~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /build/libpwizlite-3.0.3/src/pwiz/utility/misc/Std.hpp:31, - from /build/libpwizlite-3.0.3/src/pwiz/data/common/ParamTypes.cpp:28: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp: In lambda function: -/build/libpwizlite-3.0.3/src/pwiz/utility/misc/String.hpp:88:135: warning: comparison is always false due to limited range of data type [-Wtype-limits] - 88 | return std::find_if(str.begin(), str.end(), [](char ch) { return !isprint(static_cast(ch)) || static_cast(ch) < 0; }); - | ~~~~~~~~~~~~~~~~~~~~~^~~ -In file included from /build/libpwizlite-3.0.3/src/pwiz/data/common/cv.cpp:24548: -/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': -/build/libpwizlite-3.0.3/src/pwiz/data/common/cv.inl:102:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] - 102 | for (int o=0;o../libpwizlite_3.0.3-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4551,12 +4618,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/12016/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/12016/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13266 and its subdirectories -I: Current time: Mon Aug 16 09:25:23 -12 2021 -I: pbuilder-time-stamp: 1629149123 +I: removing directory /srv/workspace/pbuilder/12016 and its subdirectories +I: Current time: Tue Aug 17 11:43:46 +14 2021 +I: pbuilder-time-stamp: 1629150226