Diff of the two buildlogs: -- --- b1/build.log 2021-09-25 23:01:39.400048322 +0000 +++ b2/build.log 2021-09-25 23:07:42.430987760 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Sep 25 10:59:16 -12 2021 -I: pbuilder-time-stamp: 1632610756 +I: Current time: Sun Sep 26 13:01:48 +14 2021 +I: pbuilder-time-stamp: 1632610908 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./golang-github-shenwei356-bio_0.0~git20201213.18e3e64-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.41oM2Z2I/trustedkeys.kbx': General error -gpgv: Signature made Mon Dec 14 08:47:36 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.MJfuFj70/trustedkeys.kbx': General error +gpgv: Signature made Tue Dec 15 10:47:36 2020 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key @@ -27,135 +27,169 @@ dpkg-source: info: unpacking golang-github-shenwei356-bio_0.0~git20201213.18e3e64-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/27521/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1777/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1777/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1777/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='82bdce4678f9463ab4c90da8d1cee919' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='27521' - PS1='# ' - PS2='> ' + INVOCATION_ID=63c56e6340c84c568e7445fb235d52a0 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1777 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.OWLWLpQRp0/pbuilderrc_E1tf --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.OWLWLpQRp0/b1 --logfile b1/build.log golang-github-shenwei356-bio_0.0~git20201213.18e3e64-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.OWLWLpQRp0/pbuilderrc_t6cX --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.OWLWLpQRp0/b2 --logfile b2/build.log golang-github-shenwei356-bio_0.0~git20201213.18e3e64-1.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux virt32c 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-5 (2021-09-23) armv7l GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-arm64 #1 SMP Debian 5.10.46-5 (2021-09-23) aarch64 GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more - -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 20 21:25 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 2021 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/27521/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Jul 29 09:09 more + -rwsr-xr-x 1 root root 34400 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 9824 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 26 13:02 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 21 23:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Jul 29 09:09 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 2021 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/1777/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -288,7 +322,7 @@ Get: 83 http://deb.debian.org/debian bullseye/main armhf golang-github-spf13-viper-dev all 1.7.1-1 [48.6 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf golang-github-spf13-cobra-dev all 1.1.2-1 [96.5 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf golang-github-shenwei356-util-dev all 0.0~git20201231.861956c-1 [13.6 kB] -Fetched 96.6 MB in 11s (8682 kB/s) +Fetched 96.6 MB in 8s (12.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -644,7 +678,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/golang-github-shenwei356-bio-0.0~git20201213.18e3e64/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.0~git20201213.18e3e64-1_source.changes +hostname: Name or service not known +I: Running cd /build/golang-github-shenwei356-bio-0.0~git20201213.18e3e64/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.0~git20201213.18e3e64-1_source.changes dpkg-buildpackage: info: source package golang-github-shenwei356-bio dpkg-buildpackage: info: source version 0.0~git20201213.18e3e64-1 dpkg-buildpackage: info: source distribution unstable @@ -662,22 +697,22 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 3 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/util + cd _build && go install -trimpath -v -p 4 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/util internal/unsafeheader +math/bits internal/cpu runtime/internal/sys -math/bits -runtime/internal/math -math -internal/bytealg -runtime/internal/atomic unicode/utf8 +runtime/internal/math internal/race -runtime sync/atomic unicode +internal/bytealg +runtime/internal/atomic +math internal/testlog container/list +runtime crypto/internal/subtle crypto/subtle unicode/utf16 @@ -687,101 +722,101 @@ vendor/golang.org/x/crypto/internal/subtle internal/reflectlite sync -math/rand internal/singleflight +math/rand errors sort io -strconv internal/oserror +strconv syscall +vendor/golang.org/x/net/dns/dnsmessage bytes reflect strings -bufio -internal/syscall/unix -time -internal/syscall/execenv hash hash/crc32 crypto +bufio crypto/internal/randutil +internal/syscall/unix +time +internal/syscall/execenv crypto/hmac crypto/rc4 -internal/poll +vendor/golang.org/x/crypto/hkdf +vendor/golang.org/x/text/transform +path +github.com/shenwei356/bpool +github.com/shenwei356/bio/util +regexp/syntax context -vendor/golang.org/x/net/dns/dnsmessage +internal/poll +regexp internal/fmtsort -os encoding/binary +os crypto/cipher crypto/sha512 +crypto/ed25519/internal/edwards25519 +crypto/md5 fmt crypto/aes crypto/des -crypto/ed25519/internal/edwards25519 -crypto/md5 crypto/sha1 +crypto/sha256 +encoding/base64 +path/filepath +encoding/pem +net +vendor/golang.org/x/crypto/chacha20 +io/ioutil math/big compress/flate github.com/klauspost/compress/flate compress/gzip -crypto/sha256 encoding/hex -github.com/cznic/sortutil +net/url +vendor/golang.org/x/crypto/poly1305 github.com/klauspost/pgzip +vendor/golang.org/x/crypto/chacha20poly1305 +github.com/cznic/sortutil crypto/rand crypto/elliptic encoding/asn1 crypto/ed25519 crypto/rsa crypto/dsa -encoding/base64 -path/filepath -crypto/x509/pkix -vendor/golang.org/x/crypto/cryptobyte -encoding/pem -io/ioutil -net -net/url -crypto/ecdsa -vendor/golang.org/x/crypto/chacha20 -vendor/golang.org/x/crypto/poly1305 vendor/golang.org/x/crypto/curve25519 -vendor/golang.org/x/crypto/chacha20poly1305 -vendor/golang.org/x/crypto/hkdf -vendor/golang.org/x/text/transform log +vendor/golang.org/x/crypto/cryptobyte +crypto/x509/pkix vendor/golang.org/x/text/unicode/bidi vendor/golang.org/x/text/unicode/norm -vendor/golang.org/x/text/secure/bidirule +crypto/ecdsa vendor/golang.org/x/net/http2/hpack +vendor/golang.org/x/text/secure/bidirule mime -vendor/golang.org/x/net/idna mime/quotedprintable net/http/internal -path os/exec os/user -github.com/shenwei356/bpool +vendor/golang.org/x/net/idna github.com/shenwei356/util/byteutil github.com/shenwei356/bio/seq github.com/edsrzf/mmap-go -regexp/syntax -regexp github.com/shenwei356/bio/seqio/fai -crypto/x509 net/textproto -vendor/golang.org/x/net/http/httpguts vendor/golang.org/x/net/http/httpproxy +crypto/x509 +vendor/golang.org/x/net/http/httpguts mime/multipart -github.com/shenwei356/bio/util crypto/tls net/http/httptrace net/http github.com/shenwei356/xopen -github.com/shenwei356/breader github.com/shenwei356/bio/seqio/fastx +github.com/shenwei356/breader github.com/shenwei356/bio/featio/gtf debian/rules override_dh_auto_test make[1]: Entering directory '/build/golang-github-shenwei356-bio-0.0~git20201213.18e3e64' @@ -789,45 +824,45 @@ cp seqio/fai/seq.fa* _build/src/github.com/shenwei356/bio/seqio/fai cp featio/gtf/test*.gtf _build/src/github.com/shenwei356/bio/featio/gtf dh_auto_test - cd _build && go test -vet=off -v -p 3 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/util + cd _build && go test -vet=off -v -p 4 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/util === RUN TestGTF -{140 Twinscan inter 5141 8522 0xd12738 []} -{140 Twinscan inter_CNS 8523 9711 0xd12750 []} -{140 Twinscan inter 9712 13182 0xd12760 []} -{140 Twinscan 3UTR 65149 65487 0xd12770 []} -{140 Twinscan 3UTR 66823 66992 0xd12780 []} -{140 Twinscan stop_codon 66993 66995 0xd12790 0xd1c42c []} -{140 Twinscan CDS 66996 66999 0xd127a0 0xd1c470 []} -{140 Twinscan intron_CNS 70103 70151 0xd127b0 []} -{140 Twinscan CDS 70207 70294 0xd127c0 0xd1c474 []} -{140 Twinscan CDS 71696 71807 0xd127d0 0xd1c478 []} -{140 Twinscan start_codon 71805 71806 0xd127e0 0xd1c47c []} -{140 Twinscan start_codon 73222 73222 0xd127f0 0xd1c480 []} -{140 Twinscan CDS 73222 73222 0xd12800 0xd1c484 []} -{140 Twinscan 5UTR 73223 73504 0xd12810 []} +{140 Twinscan inter 5141 8522 0x1d12738 []} +{140 Twinscan inter_CNS 8523 9711 0x1d12750 []} +{140 Twinscan inter 9712 13182 0x1d12760 []} +{140 Twinscan 3UTR 65149 65487 0x1d12770 []} +{140 Twinscan 3UTR 66823 66992 0x1d12780 []} +{140 Twinscan stop_codon 66993 66995 0x1d12790 0x1d1c42c []} +{140 Twinscan CDS 66996 66999 0x1d127a0 0x1d1c470 []} +{140 Twinscan intron_CNS 70103 70151 0x1d127b0 []} +{140 Twinscan CDS 70207 70294 0x1d127c0 0x1d1c474 []} +{140 Twinscan CDS 71696 71807 0x1d127d0 0x1d1c478 []} +{140 Twinscan start_codon 71805 71806 0x1d127e0 0x1d1c47c []} +{140 Twinscan start_codon 73222 73222 0x1d127f0 0x1d1c480 []} +{140 Twinscan CDS 73222 73222 0x1d12800 0x1d1c484 []} +{140 Twinscan 5UTR 73223 73504 0x1d12810 []} --- PASS: TestGTF (0.00s) === RUN TestGTF2 -{381 Twinscan exon 150 200 0xd12848 []} -{381 Twinscan exon 300 401 0xd12860 []} -{381 Twinscan CDS 380 401 0xd12870 0xd1c4ac []} -{381 Twinscan exon 501 650 0xd12880 []} -{381 Twinscan CDS 501 650 0xd12890 0xd1c4f0 []} -{381 Twinscan exon 700 800 0xd128a0 []} -{381 Twinscan CDS 700 707 0xd128b0 0xd1c4f4 []} -{381 Twinscan exon 900 1000 0xd128c0 []} -{381 Twinscan start_codon 380 382 0xd128d0 0xd1c4f8 []} -{381 Twinscan stop_codon 708 710 0xd128e0 0xd1c4fc []} +{381 Twinscan exon 150 200 0x1d12848 []} +{381 Twinscan exon 300 401 0x1d12860 []} +{381 Twinscan CDS 380 401 0x1d12870 0x1d1c4ac []} +{381 Twinscan exon 501 650 0x1d12880 []} +{381 Twinscan CDS 501 650 0x1d12890 0x1d1c4f0 []} +{381 Twinscan exon 700 800 0x1d128a0 []} +{381 Twinscan CDS 700 707 0x1d128b0 0x1d1c4f4 []} +{381 Twinscan exon 900 1000 0x1d128c0 []} +{381 Twinscan start_codon 380 382 0x1d128d0 0x1d1c4f8 []} +{381 Twinscan stop_codon 708 710 0x1d128e0 0x1d1c4fc []} --- PASS: TestGTF2 (0.00s) === RUN TestGTF3 -{NC_002516.2 genbank gene 6261828 6263564 0xd12918 0xd1c52c []} -{NC_002516.2 genbank CDS 6261828 6263564 0xd12930 0xd1c560 []} -{NC_002516.2 genbank gene 6263805 6264212 0xd12940 0xd1c564 []} -{NC_002516.2 genbank CDS 6263805 6264212 0xd12950 0xd1c568 []} -{NC_002516.2 genbank gene 6264227 6264361 0xd12960 0xd1c56c []} -{NC_002516.2 genbank CDS 6264227 6264361 0xd12970 0xd1c570 []} +{NC_002516.2 genbank gene 6261828 6263564 0x1d12918 0x1d1c52c []} +{NC_002516.2 genbank CDS 6261828 6263564 0x1d12930 0x1d1c560 []} +{NC_002516.2 genbank gene 6263805 6264212 0x1d12940 0x1d1c564 []} +{NC_002516.2 genbank CDS 6263805 6264212 0x1d12950 0x1d1c568 []} +{NC_002516.2 genbank gene 6264227 6264361 0x1d12960 0x1d1c56c []} +{NC_002516.2 genbank CDS 6264227 6264361 0x1d12970 0x1d1c570 []} --- PASS: TestGTF3 (0.00s) PASS -ok github.com/shenwei356/bio/featio/gtf 0.041s +ok github.com/shenwei356/bio/featio/gtf 0.066s === RUN Test --- PASS: Test (0.00s) === RUN TestBases2AmbBase @@ -849,39 +884,39 @@ === RUN TestSubSeqInplace --- PASS: TestSubSeqInplace (0.00s) PASS -ok github.com/shenwei356/bio/seq 0.133s +ok github.com/shenwei356/bio/seq 0.490s === RUN TestFastaReader --- PASS: TestFastaReader (0.00s) === RUN TestFastaReaderNotMapWholeFile --- PASS: TestFastaReaderNotMapWholeFile (0.00s) PASS -ok github.com/shenwei356/bio/seqio/fai 0.017s +ok github.com/shenwei356/bio/seqio/fai 0.051s === RUN TestFastaReader2 ---- PASS: TestFastaReader2 (0.01s) +--- PASS: TestFastaReader2 (0.00s) === RUN TestFastaReader3 ---- PASS: TestFastaReader3 (0.00s) +--- PASS: TestFastaReader3 (0.01s) === RUN TestFastqReadern ---- PASS: TestFastqReadern (0.00s) +--- PASS: TestFastqReadern (0.01s) === RUN TestFastaReader ---- PASS: TestFastaReader (0.00s) +--- PASS: TestFastaReader (0.01s) === RUN TestFastqReader ---- PASS: TestFastqReader (0.00s) +--- PASS: TestFastqReader (0.01s) === RUN TestFastqReader2 ---- PASS: TestFastqReader2 (0.00s) +--- PASS: TestFastqReader2 (0.01s) === RUN TestFastqReader3 ---- PASS: TestFastqReader3 (0.00s) +--- PASS: TestFastqReader3 (0.01s) === RUN TestBlankFile ---- PASS: TestBlankFile (0.00s) +--- PASS: TestBlankFile (0.02s) === RUN TestBlankFile2 --- PASS: TestBlankFile2 (0.00s) === RUN TestEmptyFile --- PASS: TestEmptyFile (0.00s) PASS -ok github.com/shenwei356/bio/seqio/fastx 0.106s +ok github.com/shenwei356/bio/seqio/fastx 0.469s === RUN Test --- PASS: Test (0.00s) PASS -ok github.com/shenwei356/bio/util 0.016s +ok github.com/shenwei356/bio/util 0.043s make[1]: Leaving directory '/build/golang-github-shenwei356-bio-0.0~git20201213.18e3e64' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang @@ -914,12 +949,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1777/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1777/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/27521 and its subdirectories -I: Current time: Sat Sep 25 11:01:35 -12 2021 -I: pbuilder-time-stamp: 1632610895 +I: removing directory /srv/workspace/pbuilder/1777 and its subdirectories +I: Current time: Sun Sep 26 13:07:38 +14 2021 +I: pbuilder-time-stamp: 1632611258