Diff of the two buildlogs: -- --- b1/build.log 2021-07-26 03:10:21.713816335 +0000 +++ b2/build.log 2021-07-26 03:13:43.570226367 +0000 @@ -1,7 +1,6 @@ -W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Sun Jul 25 15:08:11 -12 2021 -I: pbuilder-time-stamp: 1627268891 +I: Current time: Mon Jul 26 17:10:35 +14 2021 +I: pbuilder-time-stamp: 1627269035 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +16,8 @@ I: copying [./fastaq_3.17.0-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.ef1fPwHN/trustedkeys.kbx': General error -gpgv: Signature made Thu Apr 16 22:12:18 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.Eq0WcX_J/trustedkeys.kbx': General error +gpgv: Signature made Sat Apr 18 00:12:18 2020 +14 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastaq_3.17.0-3.dsc @@ -27,134 +26,169 @@ dpkg-source: info: unpacking fastaq_3.17.0-3.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/7882/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/14944/tmp/hooks/D01_modify_environment starting +debug: Running on virt32c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14944/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/14944/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='7882' - PS1='# ' - PS2='> ' + INVOCATION_ID=5154104c40ec438199cf78818dece5a1 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=14944 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.nfVJkla56c/pbuilderrc_catG --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.nfVJkla56c/b1 --logfile b1/build.log fastaq_3.17.0-3.dsc' - SUDO_GID='114' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://10.0.0.15:8000/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.nfVJkla56c/pbuilderrc_ZhkT --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.nfVJkla56c/b2 --logfile b2/build.log --extrapackages usrmerge fastaq_3.17.0-3.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:8000/ I: uname -a - Linux jtx1b 5.10.0-8-arm64 #1 SMP Debian 5.10.46-2 (2021-07-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-8-armmp-lpae #1 SMP Debian 5.10.46-2 (2021-07-20) armv7l GNU/Linux I: ls -l /bin total 3580 - -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat - -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown - -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp - -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash - -rwxr-xr-x 1 root root 75880 Sep 22 2020 date - -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd - -rwxr-xr-x 1 root root 59912 Sep 22 2020 df - -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir - -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 22496 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln - -rwxr-xr-x 1 root root 35068 Feb 7 2020 login - -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls - -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more - -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm - -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 21 21:25 sh -> dash - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty - -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su - -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync - -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch - -rwxr-xr-x 1 root root 22496 Sep 22 2020 true - -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/7882/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat + -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown + -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp + -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash + -rwxr-xr-x 1 root root 75880 Sep 23 2020 date + -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd + -rwxr-xr-x 1 root root 59912 Sep 23 2020 df + -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir + -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 22496 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt + -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln + -rwxr-xr-x 1 root root 35068 Feb 8 2020 login + -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls + -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk + -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more + -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount + -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint + -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash + -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm + -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 26 17:10 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 22 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty + -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su + -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync + -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar + -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch + -rwxr-xr-x 1 root root 22496 Sep 23 2020 true + -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount + -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/14944/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -268,7 +302,7 @@ Get: 62 http://deb.debian.org/debian bullseye/main armhf python3-nose all 1.3.7-7 [133 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf samtools armhf 1.11-1 [519 kB] -Fetched 26.1 MB in 16s (1635 kB/s) +Fetched 26.1 MB in 7s (3910 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) @@ -545,9 +579,42 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 1s (48.7 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22719 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/fastaq-3.17.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastaq_3.17.0-3_source.changes +hostname: Name or service not known +I: Running cd /build/fastaq-3.17.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fastaq_3.17.0-3_source.changes dpkg-buildpackage: info: source package fastaq dpkg-buildpackage: info: source version 3.17.0-3 dpkg-buildpackage: info: source distribution unstable @@ -603,54 +670,54 @@ running build running build_py creating /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq +copying pyfastaq/tasks.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq +copying pyfastaq/utils.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq copying pyfastaq/intervals.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq -copying pyfastaq/__init__.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq +copying pyfastaq/caf.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq copying pyfastaq/genetic_codes.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq +copying pyfastaq/__init__.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq copying pyfastaq/sequences.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq -copying pyfastaq/caf.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq -copying pyfastaq/utils.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq -copying pyfastaq/tasks.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq creating /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/version.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/fasta_to_fastq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/make_random_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/chunker.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/sort_by_name.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/get_seq_flanking_gaps.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/enumerate_names.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/__init__.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/trim_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/trim_Ns_at_end.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_boulderio.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners copying pyfastaq/runners/replace_bases.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/interleave.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/deinterleave.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners copying pyfastaq/runners/caf_to_fastq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/acgtn_only.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_boulderio.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_tiling_bam.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/search_for_seq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_fasta.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/trim_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners copying pyfastaq/runners/reverse_complement.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/merge.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/split_by_base_count.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_perfect_reads.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_fake_qual.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/translate.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners copying pyfastaq/runners/add_indels.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/trim_Ns_at_end.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/expand_nucleotides.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/filter.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/get_seq_flanking_gaps.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners copying pyfastaq/runners/count_sequences.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/translate.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_random_subset.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/split_by_base_count.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_size.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/trim_ends.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/get_ids.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/sequence_trim.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_perfect_reads.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_fake_qual.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners -copying pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/sort_by_name.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/acgtn_only.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/interleave.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/make_random_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_mira_xml.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/enumerate_names.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/chunker.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_fasta.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/expand_nucleotides.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/fasta_to_fastq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners copying pyfastaq/runners/strip_illumina_suffix.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/sequence_trim.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/to_tiling_bam.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/filter.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/__init__.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/get_ids.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/search_for_seq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/version.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/trim_ends.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/deinterleave.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/merge.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners +copying pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners running build_scripts creating build creating build/scripts-3.9 @@ -664,7 +731,7 @@ I: pybuild base:232: cd /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build; python3.9 -m nose -v ---------------------------------------------------------------------- -Ran 0 tests in 0.054s +Ran 0 tests in 0.091s OK create-stamp debian/debhelper-build-stamp @@ -688,111 +755,111 @@ creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9 creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/intervals.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__init__.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/genetic_codes.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/tasks.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/utils.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/version.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/chunker.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/sort_by_name.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/enumerate_names.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/__init__.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/trim_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_boulderio.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/replace_bases.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/interleave.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/deinterleave.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/acgtn_only.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_boulderio.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_tiling_bam.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/search_for_seq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_fasta.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/trim_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/reverse_complement.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/merge.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/__pycache__ -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/__pycache__/__init__.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/__pycache__ -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/translate.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/add_indels.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/filter.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/count_sequences.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/translate.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_random_subset.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/sort_by_size.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/trim_ends.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/get_ids.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/sequence_trim.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/sort_by_name.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/acgtn_only.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/interleave.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_mira_xml.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/enumerate_names.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/chunker.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_fasta.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/__pycache__ +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/__pycache__/__init__.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/__pycache__ copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/sequences.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/caf.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/sequence_trim.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/to_tiling_bam.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/filter.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/__init__.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/get_ids.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/search_for_seq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/version.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/trim_ends.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/deinterleave.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/merge.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/intervals.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/genetic_codes.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/intervals.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/caf.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/__init__.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/sequences.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/genetic_codes.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/utils.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/tasks.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/__init__.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/caf.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/utils.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq -copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/tasks.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/intervals.py to intervals.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__init__.py to __init__.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/version.py to version.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-39.pyc +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__pycache__/utils.cpython-39.pyc -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__pycache__ +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/caf.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/genetic_codes.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/__init__.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq +copying /build/fastaq-3.17.0/.pybuild/cpython3_3.9_fastaq/build/pyfastaq/sequences.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/tasks.py to tasks.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/utils.py to utils.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-39.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-39.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-39.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/merge.py to merge.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/translate.py to translate.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-39.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/filter.py to filter.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-39.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/translate.py to translate.cpython-39.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-39.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-39.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-39.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/sequences.py to sequences.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/filter.py to filter.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/version.py to version.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/merge.py to merge.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/intervals.py to intervals.cpython-39.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/caf.py to caf.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/utils.py to utils.cpython-39.pyc -byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/tasks.py to tasks.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/__init__.py to __init__.cpython-39.pyc +byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.9/dist-packages/pyfastaq/sequences.py to sequences.cpython-39.pyc running install_egg_info running egg_info creating pyfastaq.egg-info @@ -867,22 +934,10 @@ install -p -m0644 ./debian/man/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 install -p -m0644 ./debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -p -m0644 ./debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 - mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 - mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 - mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 - mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 - mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 - mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 - mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 @@ -893,17 +948,18 @@ mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 @@ -912,7 +968,20 @@ mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 - chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 + mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 + mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 + mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 + mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 + mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 + mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 + mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 + chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 make[1]: Leaving directory '/build/fastaq-3.17.0' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 @@ -976,12 +1045,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/14944/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14944/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/7882 and its subdirectories -I: Current time: Sun Jul 25 15:10:16 -12 2021 -I: pbuilder-time-stamp: 1627269016 +I: removing directory /srv/workspace/pbuilder/14944 and its subdirectories +I: Current time: Mon Jul 26 17:13:36 +14 2021 +I: pbuilder-time-stamp: 1627269216