Diff of the two buildlogs: -- --- b1/build.log 2021-07-11 01:49:26.121226830 +0000 +++ b2/build.log 2021-07-11 01:51:55.267607950 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jul 10 13:45:50 -12 2021 -I: pbuilder-time-stamp: 1625967950 +I: Current time: Sat Aug 13 22:12:31 +14 2022 +I: pbuilder-time-stamp: 1660378351 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./python-deeptools_3.5.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.gSiEyF3l/trustedkeys.kbx': General error -gpgv: Signature made Thu Sep 17 01:51:50 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.ohSBK6aD/trustedkeys.kbx': General error +gpgv: Signature made Fri Sep 18 03:51:50 2020 +14 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,169 @@ dpkg-source: info: applying python2to3_for_executables.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/32168/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2545/tmp/hooks/D01_modify_environment starting +debug: Running on codethink9-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2545/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2545/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='32168' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2545 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qYqgWtTQdm/pbuilderrc_1Eyf --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qYqgWtTQdm/b1 --logfile b1/build.log python-deeptools_3.5.0-1.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qYqgWtTQdm/pbuilderrc_s2qJ --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qYqgWtTQdm/b2 --logfile b2/build.log --extrapackages usrmerge python-deeptools_3.5.0-1.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink10-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more - -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount - -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 8 21:24 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/32168/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Jun 22 2021 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Feb 8 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Feb 8 2021 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Feb 8 2021 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Feb 8 2021 more + -rwsr-xr-x 1 root root 51360 Feb 8 2021 mount + -rwxr-xr-x 1 root root 14496 Feb 8 2021 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 13 22:12 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 13 05:47 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Feb 8 2021 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Feb 8 2021 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Feb 8 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/2545/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -362,7 +396,7 @@ Get: 140 http://deb.debian.org/debian bullseye/main arm64 python3-pybigwig arm64 0.3.17-1+b4 [39.5 kB] Get: 141 http://deb.debian.org/debian bullseye/main arm64 python3-pysam arm64 0.15.4+ds-3+b2 [1386 kB] Get: 142 http://deb.debian.org/debian bullseye/main arm64 python3-scipy arm64 1.6.0-2 [11.6 MB] -Fetched 70.2 MB in 4s (19.6 MB/s) +Fetched 70.2 MB in 2s (45.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -972,8 +1006,45 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1254 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 40692 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/python-deeptools-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-deeptools_3.5.0-1_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/python-deeptools-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-deeptools_3.5.0-1_source.changes dpkg-buildpackage: info: source package python-deeptools dpkg-buildpackage: info: source version 3.5.0-1 dpkg-buildpackage: info: source distribution unstable @@ -2261,110 +2332,110 @@ deeptools.test.test_plotCoverage.test_plotCoverage_default ... ok Minimal testing ... ok --minMappingQuality 10 --samFlagExclude 512 --ignoreDuplicates -bl ... ok -Test alignmentSieve with the --BED option ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vztadezp.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fpjpckat.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bfvatsio.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_k48_e5mr.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mukpccej.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vaueb3vk.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_37kn5_80.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ldfw2izd.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_e9xraky2.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_n4wadwtw.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rcb38pmn.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2g32cst_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_l0l7wc7z.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_46exjvgc.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9369zzb6.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_m2m7qd4x.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_zbdazpx3.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9tk5rwjs.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_i1z3f0qb.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pq5shbob.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_38v7vh10.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_d4m0zp3f.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_phvijwzu.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7sf_p1n_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ohbz06fv.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7hdy314_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_5huaa0kh.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vj1p8p8y.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_zwr71to4.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_36v_pda9.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_y0wclz8i.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_uztymhw2.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xtqo5u9i.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_gu9wk4j1.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_p3mtk60g.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_19w8am0m.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vwahgt02.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bt1hg7se.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_evtny_b3.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_djnccd5r.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jhbs2lgc.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_l2j2fx76.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_kfnddvvf.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_wa56604_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qjhz9flx.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_58l9so10.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2d7elbyq.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1b2m6f24.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ff1f7wwp.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_h31id7zz.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_eni6btfg.bam' +Test alignmentSieve with the --BED option ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_x8l2tu8t.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_727muhe5.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_1qhihu76.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7n4yydhf.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_w9tyjn7g.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_17v1ferp.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9nh63447.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hh6w9ydu.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_22uznrgd.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7_r2zzl4.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_f9kugyqw.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_d5oo0y28.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_h1stf3q3.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_h7rjfgp0.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_f_hya_uw.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_tfkgyjvu.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xek1isa7.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4w2zg5zf.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_13xc1jzv.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_5_2ii7nt.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9qyz5_2t.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ldsbmv1v.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hcoklerk.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_io6nfmrb.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_36a8wlio.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_kuyf01es.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_df5rfbp4.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__5fshhz6.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vxbok7vb.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hxfk258_.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ktihaffc.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7efxcc1i.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8359d2ha.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_chvqwi36.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_o08uqn4a.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xnhzek8p.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__51ts58y.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_kj0zz62f.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_kvhvgt4t.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qzwdf1rr.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_saccdnzq.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_26j2he37.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_faqmkvtf.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_wklg0qux.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4__1jk09.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_of1gnnzy.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pjqnkqn8.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4e4lwuu2.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ycmt76mx.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_07ky__lb.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fdv4kczs.bam' ok Test filtering a BAM file by MAPQ, flag, and blacklist ... SKIP: Skip this test (see )https://github.com/deeptools/deepTools/issues/903 -Test alignmentSieve --BED --shift ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9sqv8tkp.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_sy9iqx17.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_d1m8kp67.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_iiu_fsa_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qxhc_cr5.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_41p3zhcc.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_svzeyz2l.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_du8py0aa.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_voqqgnb0.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_29hgrn0e.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2m4mkcl7.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_k5tiu_zq.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jgzoa70e.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jr6ewuxz.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jfvoufos.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_yz9vqpm0.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_nmd3xviz.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_5hrsbk1m.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_r03x2rz7.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pleytxdi.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ecm8igwv.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2iyx55xv.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8nqzzqgt.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_txqhmhke.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_0nnm34r9.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_e3nqpfkv.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_f33ga86h.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8vekc3ma.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_bfb0461_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_5orn90xq.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_m2_ygkuv.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pii5jp5k.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_tuul4jut.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_13ckz0ju.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_g8zwrngb.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_hwdfp694.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__27sftff.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fctef669.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_lhmtpkix.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_6s6dcaep.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_repn4j32.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_u47ikf17.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_eyyex5ap.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_cexfyxkr.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mb99fxpq.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4h7pxpk_.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_rj4sszbq.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_pva5g1jp.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8lhb5dqj.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_k0z3693i.bam' -[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_czki63ym.bam' +Test alignmentSieve --BED --shift ... [E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_n40b2i1s.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_87dkbo7e.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_6t_fzw8r.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_gnphh9ej.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_cf0tzsvk.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_uwukovoj.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jsq8yayt.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_cbl1kvqu.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fcrsnvbe.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_140ssy8h.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_kvw7hfhx.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_49c7z9ah.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_4o1dmhn8.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_6wwzr7d8.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_auc7stu3.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8rcntp6h.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_sxxbg3wn.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qu21x6pn.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_7l5bx577.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_dxrx1f8t.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_dotgxkuw.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_kvbe0xiz.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__x51vqgr.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ystjiz2y.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_5kaf2v3w.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vjnlhwy6.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools__nm41dbt.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_9q2_kxsv.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_jw4svqi2.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_b87v6at0.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_x6d6gd_f.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_mtlv8dtp.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_a2gavwr7.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_w62fsq3t.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_dnqt57_s.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_25u71_q3.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_qlguvsno.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_e9b9z0v8.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_fqq80wnh.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_syfye0h2.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_vznv74ny.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_cseuz04x.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_xl9v67cp.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_2wg7m1ay.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_uv58dsxg.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_yl2f_xko.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ruxbw6yd.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_ilargam9.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_8_tkbbak.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_p2i06uic.bam' +[E::idx_find_and_load] Could not retrieve index file for '/tmp/_deeptools_n0_e4sy4.bam' ok Checks everything that is in /bin/ ... plotProfile 3.5.0 plotPCA 3.5.0 @@ -2414,13 +2485,13 @@ deeptools.test.testskip_heatmapper_images.test_plotProfiler_multibigwig_pergroup ... ok ---------------------------------------------------------------------- -Ran 108 tests in 45.144s +Ran 108 tests in 34.766s OK (SKIP=1) -MainProcess, processing 3 (3959.4 per sec) reads @ 3R:0-200 -MainProcess countReadsInRegions_worker: processing 4 (3220.2 per sec) @ 3R:0-200 -MainProcess, processing 3 (3039.4 per sec) reads @ 3R:0-200 -MainProcess countReadsInRegions_worker: processing 4 (2713.9 per sec) @ 3R:0-200 +MainProcess, processing 3 (8774.7 per sec) reads @ 3R:0-200 +MainProcess countReadsInRegions_worker: processing 4 (5974.8 per sec) @ 3R:0-200 +MainProcess, processing 3 (6990.5 per sec) reads @ 3R:0-200 +MainProcess countReadsInRegions_worker: processing 4 (5168.6 per sec) @ 3R:0-200 Due to filtering, 50.0% of the aforementioned alignments will be used 1.0 Due to filtering, 50.0% of the aforementioned alignments will be used 1.0 There are 193 alignments, of which 7 are completely within a blacklist region. @@ -2677,7 +2748,7 @@ D: dh_python3 pydist:142: trying to find dependency for pyBigWig>=0.2.1 (python=None) D: dh_python3 pydist:142: trying to find dependency for pysam>=0.14.0 (python=None) D: dh_python3 pydist:142: trying to find dependency for scipy>=0.17.0 (python=None) -D: dh_python3 depends:275: D={'python3-numpy', 'python3-deeptoolsintervals', 'python3:any', 'python3-matplotlib (>=2.1.2)', 'python3-pysam (>=0.14.0)', 'python3-pybigwig', 'python3-numpydoc', 'python3-scipy (>=0.17.0)', 'python3-py2bit', 'python3-plotly (>=2.0.0)'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:275: D={'python3-matplotlib (>=2.1.2)', 'python3-numpy', 'python3-py2bit', 'python3-deeptoolsintervals', 'python3-scipy (>=0.17.0)', 'python3-numpydoc', 'python3-pysam (>=0.14.0)', 'python3-pybigwig', 'python3:any', 'python3-plotly (>=2.0.0)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild @@ -2722,12 +2793,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2545/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2545/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/32168 and its subdirectories -I: Current time: Sat Jul 10 13:49:25 -12 2021 -I: pbuilder-time-stamp: 1625968165 +I: removing directory /srv/workspace/pbuilder/2545 and its subdirectories +I: Current time: Sat Aug 13 22:14:54 +14 2022 +I: pbuilder-time-stamp: 1660378494