Diff of the two buildlogs: -- --- b1/build.log 2021-09-07 02:36:39.116548346 +0000 +++ b2/build.log 2021-09-07 03:01:49.598346857 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Oct 9 20:29:18 -12 2022 -I: pbuilder-time-stamp: 1665390558 +I: Current time: Tue Sep 7 16:36:43 +14 2021 +I: pbuilder-time-stamp: 1630982203 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./meep-openmpi_1.17.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.38WPCybU/trustedkeys.kbx': General error -gpgv: Signature made Tue Feb 2 11:18:48 2021 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.Mpmiprg9/trustedkeys.kbx': General error +gpgv: Signature made Wed Feb 3 13:18:48 2021 +14 gpgv: using RSA key 6201FBFFDBBDE07822EABB9696FCAC0D387B5847 gpgv: issuer "debian@alteholz.de" gpgv: Can't check signature: No public key @@ -27,135 +27,169 @@ dpkg-source: info: unpacking meep-openmpi_1.17.1-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/18798/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/31785/tmp/hooks/D01_modify_environment starting +debug: Running on codethink14-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/31785/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/31785/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='18798' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=31785 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.23f4oOGUIA/pbuilderrc_rlSg --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.23f4oOGUIA/b1 --logfile b1/build.log meep-openmpi_1.17.1-2.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.23f4oOGUIA/pbuilderrc_p8sD --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.23f4oOGUIA/b2 --logfile b2/build.log meep-openmpi_1.17.1-2.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink15-arm64 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Aug 4 2021 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Jul 28 2021 more - -rwsr-xr-x 1 root root 51360 Jul 28 2021 mount - -rwxr-xr-x 1 root root 14496 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 23 03:47 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Jul 28 2021 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Jul 28 2021 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/18798/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Jul 29 09:09 more + -rwsr-xr-x 1 root root 51360 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 14496 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 7 16:36 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 21 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Jul 29 09:09 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/31785/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -387,7 +421,7 @@ Get: 158 http://deb.debian.org/debian bullseye/main arm64 python3-h5py all 2.10.0-9 [11.4 kB] Get: 159 http://deb.debian.org/debian bullseye/main arm64 swig4.0 arm64 4.0.2-1 [1295 kB] Get: 160 http://deb.debian.org/debian bullseye/main arm64 swig all 4.0.2-1 [330 kB] -Fetched 88.1 MB in 3s (27.3 MB/s) +Fetched 88.1 MB in 2s (47.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -1067,7 +1101,8 @@ fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/meep-openmpi-1.17.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../meep-openmpi_1.17.1-2_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/meep-openmpi-1.17.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../meep-openmpi_1.17.1-2_source.changes dpkg-buildpackage: info: source package meep-openmpi dpkg-buildpackage: info: source version 1.17.1-2 dpkg-buildpackage: info: source distribution unstable @@ -1344,7 +1379,7 @@ make[4]: Entering directory '/build/meep-openmpi-1.17.1/src' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sphere-quad.o sphere-quad.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-openmpi-1.17.1/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h @@ -1352,31 +1387,35 @@ make[4]: Entering directory '/build/meep-openmpi-1.17.1/src' Making all in support make[5]: Entering directory '/build/meep-openmpi-1.17.1/src/support' -/bin/bash ../../libtool --tag=CC --mode=compile aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 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mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o .libs/boundaries.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o .libs/bands.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o .libs/cw_fields.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o .libs/array_slice.o +anisotropic_averaging.cpp: In function 'meep::vec meep::sphere_pt(const meep::vec&, double, int, double&)': +anisotropic_averaging.cpp:39:19: warning: control reaches end of non-void function [-Wreturn-type] + 39 | default: abort("unknown dimensions in sphere_pt\n"); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': boundaries.cpp:69:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 69 | switch (d) { @@ -1384,35 +1423,32 @@ boundaries.cpp:77:5: note: here 77 | case D3: | ^~~~ -anisotropic_averaging.cpp: In function 'meep::vec meep::sphere_pt(const meep::vec&, double, int, double&)': -anisotropic_averaging.cpp:39:19: warning: control reaches end of non-void function [-Wreturn-type] - 39 | default: abort("unknown dimensions in sphere_pt\n"); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dft.cpp: In member function 'cdouble meep::dft_chunk::process_dft_component(int, meep::direction*, meep::ivec, meep::ivec, int, meep::h5file*, double*, int, cdouble*, void*, void*, int, bool, meep::fields*)': dft.cpp:749:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 749 | if ((num_freq < 0) || (num_freq > omega.size()-1)) | ~~~~~~~~~^~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 In file included from meep.hpp:24, - from boundaries.cpp:21: -meep/vec.hpp: In member function 'bool meep::fields::locate_component_point(meep::component*, meep::ivec*, std::complex*) const': + from meep_internals.hpp:19, + from cw_fields.cpp:18: +meep/vec.hpp: In function 'void meep::fields_to_array(const meep::fields&, std::complex*)': meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 In file included from meep.hpp:24, - from meep_internals.hpp:19, - from cw_fields.cpp:18: -meep/vec.hpp: In function 'void meep::fields_to_array(const meep::fields&, std::complex*)': + from boundaries.cpp:21: +meep/vec.hpp: In member function 'bool meep::fields::locate_component_point(meep::component*, meep::ivec*, std::complex*) const': meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); | ^~~~~~~~~~~ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft_ldos.lo dft_ldos.cpp In file included from meep.hpp:24, from casimir.cpp:29: meep/vec.hpp: In member function 'std::complex meep::fields::casimir_stress_dct_integral(meep::direction, meep::direction, double, double, double, meep::field_type, meep::volume, bool)': @@ -1422,8 +1458,6 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft_ldos.lo dft_ldos.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o casimir.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o .libs/dft_ldos.o meep/vec.hpp: In function 'void meep::array_to_fields(const std::complex*, meep::fields&)': meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] @@ -1432,18 +1466,9 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o energy_and_flux.lo energy_and_flux.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c casimir.cpp -fPIC -DPIC -o casimir.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o energy_and_flux.lo energy_and_flux.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o .libs/energy_and_flux.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o boundaries.o >/dev/null 2>&1 -meep/vec.hpp: In member function 'bool meep::fields::solve_cw(double, int, std::complex, int, std::complex*, double, int)': -meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 431 | case R: return (component)(start_point + 2); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o cw_fields.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o array_slice.o >/dev/null 2>&1 dft.cpp: In member function 'void meep::fields::get_overlap(void*, void*, meep::dft_flux, int, cdouble*)': dft.cpp:1246:57: warning: '*((void*)& cH +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] 1246 | mode2_data, cE[1]); @@ -1457,26 +1482,24 @@ dft.cpp:1244:57: warning: 'cE' may be used uninitialized in this function [-Wmaybe-uninitialized] 1244 | mode2_data, cE[0]); | ^ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o fields.lo fields.cpp +meep/vec.hpp: In member function 'bool meep::fields::solve_cw(double, int, std::complex, int, std::complex*, double, int)': +meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 431 | case R: return (component)(start_point + 2); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c boundaries.cpp -fPIC -DPIC -o boundaries.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c cw_fields.cpp -fPIC -DPIC -o cw_fields.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c array_slice.cpp -fPIC -DPIC -o array_slice.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o dft_ldos.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o fields.lo fields.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o energy_and_flux.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o .libs/fields.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 -fields.cpp: In member function 'meep::volume meep::fields::total_volume() const': -fields.cpp:639:31: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] - 639 | v = v | S.transform(gv0, n); - | ^ -In file included from meep.hpp:24, - from fields.cpp:23: -meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' - 829 | volume(const volume &vol); - | ^~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o loop_in_chunks.lo loop_in_chunks.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o loop_in_chunks.lo loop_in_chunks.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o .libs/loop_in_chunks.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5fields.lo h5fields.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c h5fields.cpp -fPIC -DPIC -o .libs/h5fields.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c fields.cpp -fPIC -DPIC -o fields.o >/dev/null 2>&1 loop_in_chunks.cpp: In member function 'void meep::fields::loop_in_chunks(meep::field_chunkloop, void*, const meep::volume&, meep::component, bool, bool)': loop_in_chunks.cpp:425:44: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 425 | vS = S.transform(chunks[i]->v, sn); @@ -1494,47 +1517,58 @@ meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o h5file.lo h5file.cpp +fields.cpp: In member function 'meep::volume meep::fields::total_volume() const': +fields.cpp:639:31: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] + 639 | v = v | S.transform(gv0, n); + | ^ +In file included from meep.hpp:24, + from fields.cpp:23: +meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' + 829 | volume(const volume &vol); + | ^~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 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-I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o near2far.lo near2far.cpp monitor.cpp: In member function 'double meep::fields::get_field(meep::derived_component, const meep::vec&, bool) const': monitor.cpp:123:19: warning: control reaches end of non-void function [-Wreturn-type] 123 | default: abort("unknown derived_component in get_field"); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o .libs/near2far.o -monitor.cpp: In member function 'std::complex meep::structure_chunk::get_chi1inv_at_pt(meep::component, meep::direction, int, double) const': -monitor.cpp:325:19: warning: 'comp_list[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] - 325 | component cc = comp_list[com_it]; - | ^~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o output_directory.lo output_directory.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o output_directory.lo output_directory.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H 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-I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o integrate2.o >/dev/null 2>&1 +near2far.cpp: In member function 'meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)': +near2far.cpp:569:38: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] + 569 | everywhere = everywhere | where->v; + | ^ In file included from meep.hpp:24, - from multilevel-atom.cpp:22: -meep/vec.hpp: In member function 'virtual void meep::multilevel_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const': -meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 431 | case R: return (component)(start_point + 2); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ + from meep_internals.hpp:19, + from near2far.cpp:23: +meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' + 829 | volume(const volume &vol); + | ^~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o In file included from /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/aarch64-linux-gnu/openmpi/include/mpi.h:2887, from mympi.cpp:32: @@ -1545,16 +1579,10 @@ /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from 'void (*)(const void*, void*, int, const MPI::Datatype&)' to 'void (*)(void*, void*, int*, ompi_datatype_t**)' [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ -near2far.cpp: In member function 'meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)': -near2far.cpp:569:38: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] - 569 | everywhere = everywhere | where->v; - | ^ -In file included from meep.hpp:24, - from meep_internals.hpp:19, - from near2far.cpp:23: -meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' - 829 | volume(const volume &vol); - | ^~~~~~ +monitor.cpp: In member function 'std::complex meep::structure_chunk::get_chi1inv_at_pt(meep::component, meep::direction, int, double) const': +monitor.cpp:325:19: warning: 'comp_list[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] + 325 | component cc = comp_list[com_it]; + | ^~ mympi.cpp: In function 'void meep::abort(const char*, ...)': mympi.cpp:124:12: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 124 | vasprintf(&s, fmt, ap); @@ -1563,12 +1591,16 @@ mympi.cpp:596:16: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 596 | vasprintf(&s, fmt, ap); | ~~~~~~~~~^~~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c integrate2.cpp -fPIC -DPIC -o integrate2.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o random.lo random.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sources.lo sources.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o .libs/sources.o +In file included from meep.hpp:24, + from multilevel-atom.cpp:22: +meep/vec.hpp: In member function 'virtual void meep::multilevel_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const': +meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 431 | case R: return (component)(start_point + 2); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o sources.lo sources.cpp output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': output_directory.cpp:117:35: warning: '-out' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] 117 | snprintf(outdirname, buflen, "%s-out", basename); @@ -1603,7 +1635,10 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: 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-fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c random.cpp -fPIC -DPIC -o random.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 sources.cpp: In function 'std::complex meep::gaussianbeam_ampfunc(const meep::vec&)': sources.cpp:490:1: warning: control reaches end of non-void function [-Wreturn-type] 490 | } | ^ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step.lo step.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o .libs/step.o near2far.cpp: In member function 'meep::dft_near2far meep::fields::add_dft_near2far(const meep::volume_list*, const double*, size_t, int)': near2far.cpp:626:42: warning: 'fd[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 626 | component c = direction_component(i == 0 ? Ex : Hx, fd[j]); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_db.lo step_db.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o stress.lo stress.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step.lo step.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_db.lo step_db.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o .libs/step.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o .libs/step_db.o +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o stress.lo stress.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o .libs/stress.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure.lo structure.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure_dump.lo structure_dump.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure.lo structure.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o .libs/structure.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 In file included from meep.hpp:24, from step.cpp:22: meep/vec.hpp: In member function 'void meep::fields_chunk::step_source(meep::field_type, bool)': @@ -1640,7 +1674,6 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 In file included from stress.cpp:21: ./meep.hpp: In constructor 'meep::dft_force::dft_force(meep::dft_chunk*, meep::dft_chunk*, meep::dft_chunk*, const double*, size_t, const meep::volume&)': ./meep.hpp:1194:10: warning: 'meep::dft_force::where' will be initialized after [-Wreorder] @@ -1661,7 +1694,20 @@ ./meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o structure_dump.lo structure_dump.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step.cpp -fPIC -DPIC -o step.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o +In file included from meep.hpp:24, + from step_db.cpp:23: +meep/vec.hpp: In member function 'bool meep::fields_chunk::step_db(meep::field_type)': +meep/vec.hpp:429:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] + 429 | case Y: return (component)(start_point + 1); + | ^~~~~~~~~~~ +meep/vec.hpp:414:13: note: 'start_point' was declared here + 414 | component start_point; + | ^~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o sources.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 structure.cpp: In member function 'void meep::structure::choose_chunkdivision(const meep::grid_volume&, int, const meep::boundary_region&, const meep::symmetry&)': structure.cpp:130:23: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 130 | v = gv.surroundings(); @@ -1680,16 +1726,8 @@ meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c sources.cpp -fPIC -DPIC -o sources.o >/dev/null 2>&1 -In file included from meep.hpp:24, - from step_db.cpp:23: -meep/vec.hpp: In member function 'bool meep::fields_chunk::step_db(meep::field_type)': -meep/vec.hpp:429:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] - 429 | case Y: return (component)(start_point + 1); - | ^~~~~~~~~~~ -meep/vec.hpp:414:13: note: 'start_point' was declared here - 414 | component start_point; - | ^~~~~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o susceptibility.lo susceptibility.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 structure_dump.cpp: In member function 'void meep::structure::dump(const char*)': structure_dump.cpp:275:46: warning: '_' directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] 275 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); @@ -1704,7 +1742,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c susceptibility.cpp -fPIC -DPIC -o .libs/susceptibility.o structure_dump.cpp: In member function 'void meep::structure::load(const char*)': structure_dump.cpp:644:44: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] 644 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); @@ -1720,13 +1758,10 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 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-I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_eh.lo update_eh.cpp +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o In file included from meep.hpp:24, from susceptibility.cpp:31: @@ -1737,6 +1772,7 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 meep/vec.hpp: In member function 'virtual void meep::gyrotropic_susceptibility::subtract_P(meep::field_type, meep::realnum* (*)[2], void*) const': meep/vec.hpp:431:32: warning: 'start_point' may be used uninitialized in this function [-Wmaybe-uninitialized] 431 | case R: return (component)(start_point + 2); @@ -1751,9 +1787,9 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mpb.lo mpb.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o mpb.lo mpb.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o update_pols.lo update_pols.cpp In file included from meep.hpp:24, from update_eh.cpp:20: meep/vec.hpp: In member function 'bool meep::fields_chunk::update_eh(meep::field_type, bool)': @@ -1799,21 +1835,20 @@ meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 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-fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o .libs/vec.o +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o vec.lo vec.cpp libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 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-fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 vec.cpp: In member function 'size_t meep::grid_volume::surface_area() const': vec.cpp:866:14: warning: statement has no effect [-Wunused-value] @@ -1870,7 +1905,10 @@ meepgeom.cpp:2497:22: warning: unused variable 'v_cur' [-Wunused-variable] 2497 | meep::realnum *v_cur = &v[ng * i1]; | ^~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 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mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o step_generic_stride1.lo step_generic_stride1.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o .libs/step_generic_stride1.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 In file included from meep.hpp:24, from meep_internals.hpp:19, from vec.cpp:23: @@ -1906,11 +1941,11 @@ meepgeom.cpp:2314:62: warning: 'dir_idx' may be used uninitialized in this function [-Wmaybe-uninitialized] 2314 | std::complex result = fields_a * dA_du[3 * dir_idx + dir_idx] * fields_f; | ~~~~~~~~~~~~^~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/aarch64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/aarch64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/10/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/meepgeom.o .libs/GDSIIgeom.o .libs/step_generic_stride1.o -Wl,--whole-archive support/.libs/libsupport.a -Wl,--no-whole-archive -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/10/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,libmeep.so.23 -o .libs/libmeep.so.23.0.1 libtool: link: (cd ".libs" && rm -f "libmeep.so.23" && ln -s "libmeep.so.23.0.1" "libmeep.so.23") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.23.0.1" "libmeep.so") @@ -2049,6 +2084,10 @@ ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ +structure.cpp: In member function 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)': +structure.cpp:580:10: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] + 580 | mat2 = mat1; + | ~~~~~^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_meep_structure_chunk_v_set(SCM, SCM)': meep_wrap.cxx:20561:26: warning: implicitly-declared 'constexpr meep::volume& meep::volume::operator=(const meep::volume&)' is deprecated [-Wdeprecated-copy] 20561 | if (arg1) (arg1)->v = *arg2; @@ -2069,10 +2108,6 @@ ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ -structure.cpp: In member function 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)': -structure.cpp:580:10: warning: 'mat1' may be used uninitialized in this function [-Wmaybe-uninitialized] - 580 | mat2 = mat1; - | ~~~~~^~~~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)': meep_wrap.cxx:33250:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 33250 | arg1 = (meep::component const) scm_to_int(argv[0]); @@ -2191,7 +2226,7 @@ ../src/meep/vec.hpp:414:13: note: 'start_point' was declared here 414 | component start_point; | ^~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-2.2 -lgc -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-2.2 -lgc -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-openmpi-1.17.1/scheme' make[3]: Leaving directory '/build/meep-openmpi-1.17.1/scheme' @@ -2206,7 +2241,7 @@ fi make all-am make[4]: Entering directory '/build/meep-openmpi-1.17.1/python' -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o .libs/_meep_la-meep-python.o In file included from meep-python.cxx:3508: typemap_utils.cpp: In function 'PyObject* py_volume_object()': @@ -2453,7 +2488,7 @@ 4614 | geom_box_tree geometry_tree = calculate_tree(*where_vol,*l); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/numpy/core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c meep-python.cxx -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/10/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/meep-openmpi-1.17.1/src/.libs ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/10/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.23 -o .libs/_meep.so.23.0.1 libtool: link: (cd ".libs" && rm -f "_meep.so.23" && ln -s "_meep.so.23.0.1" "_meep.so.23") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.23.0.1" "_meep.so") @@ -2505,89 +2540,89 @@ make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml pw-source-ll ring-ll cyl-ellipsoid-ll absorber-1d-ll array-slice-ll user-defined-material dft-fields gdsII-3d bend-flux-ll array-metadata make[4]: Entering directory '/build/meep-openmpi-1.17.1/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 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-fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/user-defined-material user-defined-material.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o dft-fields.o dft-fields.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o dft-fields dft-fields.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o dft-fields dft-fields.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/dft-fields dft-fields.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o gdsII-3d.o gdsII-3d.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/gdsII-3d gdsII-3d.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o bend-flux-ll.o bend-flux-ll.cpp bend-flux-ll.cpp: In function 'meep::structure create_structure_from_GDSII(char*, bool, meep::volume&, meep::volume&, meep::volume&)': @@ -2640,10 +2675,10 @@ ../src/meep/vec.hpp:829:3: note: because 'meep::volume' has user-provided 'meep::volume::volume(const meep::volume&)' 829 | volume(const volume &vol); | ^~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o bend-flux-ll bend-flux-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o bend-flux-ll bend-flux-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/bend-flux-ll bend-flux-ll.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -pthread -I/usr/include/guile/2.2 -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -c -o array-metadata.o array-metadata.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o array-metadata array-metadata.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o array-metadata array-metadata.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm libtool: link: mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o .libs/array-metadata array-metadata.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm make[4]: Leaving directory '/build/meep-openmpi-1.17.1/tests' make check-TESTS @@ -2989,80 +3024,80 @@ ./src/step_generic_stride1.o ./src/step_generic.lo ./src/step_generic.o -./src/meepgeom.lo -./src/meepgeom.o ./src/vec.lo ./src/vec.o +./src/meepgeom.lo ./src/structure.lo +./src/meepgeom.o ./src/structure.o ./src/GDSIIgeom.lo ./src/GDSIIgeom.o ./src/susceptibility.lo ./src/susceptibility.o -./src/mpb.lo -./src/mpb.o ./src/update_pols.lo ./src/update_pols.o ./src/update_eh.lo ./src/update_eh.o -./src/step_db.lo -./src/step_db.o +./src/mpb.lo +./src/mpb.o ./src/time.lo ./src/time.o -./src/near2far.lo ./src/structure_dump.lo ./src/structure_dump.o -./src/near2far.o +./src/step_db.lo +./src/step_db.o ./src/sources.lo ./src/sources.o +./src/near2far.lo +./src/near2far.o ./src/stress.lo ./src/stress.o ./src/mympi.lo ./src/mympi.o ./src/step.lo ./src/step.o -./src/random.lo -./src/random.o ./src/multilevel-atom.lo ./src/multilevel-atom.o ./src/monitor.lo -./src/integrate2.lo ./src/monitor.o +./src/integrate2.lo ./src/integrate2.o ./src/output_directory.lo ./src/output_directory.o -./src/integrate.lo -./src/integrate.o +./src/random.lo +./src/random.o +./src/h5fields.lo +./src/h5fields.o ./src/initialize.lo ./src/initialize.o +./src/integrate.lo +./src/integrate.o +./src/fields.lo ./src/loop_in_chunks.lo ./src/loop_in_chunks.o -./src/anisotropic_averaging.lo +./src/fields.o ./src/h5file.lo -./src/anisotropic_averaging.o ./src/h5file.o -./src/h5fields.lo -./src/h5fields.o +./src/anisotropic_averaging.lo +./src/anisotropic_averaging.o ./src/dft.lo -./src/fields.lo -./src/fields.o ./src/dft.o ./src/boundaries.lo ./src/boundaries.o +./src/energy_and_flux.lo +./src/energy_and_flux.o ./src/array_slice.lo ./src/array_slice.o ./src/cw_fields.lo ./src/cw_fields.o ./src/dft_ldos.lo ./src/dft_ldos.o -./src/energy_and_flux.lo -./src/energy_and_flux.o ./src/casimir.lo ./src/casimir.o -./src/bands.lo -./src/bands.o ./src/bicgstab.lo ./src/bicgstab.o +./src/bands.lo +./src/bands.o ./src/sphere-quad.h ./src/sphere_quad ./src/.libs @@ -3079,38 +3114,38 @@ ./src/.libs/GDSIIgeom.o ./src/.libs/structure.o ./src/.libs/update_pols.o -./src/.libs/mpb.o ./src/.libs/susceptibility.o +./src/.libs/mpb.o ./src/.libs/update_eh.o ./src/.libs/time.o -./src/.libs/step_db.o ./src/.libs/structure_dump.o +./src/.libs/step_db.o ./src/.libs/stress.o ./src/.libs/sources.o ./src/.libs/step.o ./src/.libs/near2far.o ./src/.libs/mympi.o +./src/.libs/multilevel-atom.o ./src/.libs/random.o ./src/.libs/output_directory.o -./src/.libs/multilevel-atom.o -./src/.libs/integrate2.o ./src/.libs/monitor.o -./src/.libs/integrate.o +./src/.libs/integrate2.o +./src/.libs/h5fields.o ./src/.libs/initialize.o +./src/.libs/integrate.o ./src/.libs/h5file.o ./src/.libs/loop_in_chunks.o -./src/.libs/h5fields.o ./src/.libs/fields.o -./src/.libs/dft.o -./src/.libs/anisotropic_averaging.o ./src/.libs/energy_and_flux.o +./src/.libs/anisotropic_averaging.o +./src/.libs/dft.o ./src/.libs/dft_ldos.o ./src/.libs/array_slice.o ./src/.libs/cw_fields.o ./src/.libs/boundaries.o ./src/.libs/casimir.o -./src/.libs/bands.o ./src/.libs/bicgstab.o +./src/.libs/bands.o ./src/sphere-quad.o ./src/step_generic_stride1.cpp ./src/Makefile @@ -3182,8 +3217,8 @@ ./scheme/.libs ./scheme/.libs/meep ./scheme/meep-meep_wrap.o -./scheme/meep-geom.o ./scheme/meep-structure.o +./scheme/meep-geom.o ./scheme/meep-ctl-io.o ./scheme/meep-meep.o ./scheme/meep-main.o @@ -3919,7 +3954,7 @@ make[5]: Entering directory '/build/meep-openmpi-1.17.1/src' make[6]: Entering directory '/build/meep-openmpi-1.17.1/src' /bin/mkdir -p '/build/meep-openmpi-1.17.1/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-openmpi-1.17.1/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/meep-openmpi-1.17.1/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.23.0.1 /build/meep-openmpi-1.17.1/debian/tmp/usr/lib/aarch64-linux-gnu/libmeep.so.23.0.1 libtool: install: (cd /build/meep-openmpi-1.17.1/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeep.so.23.0.1 libmeep.so.23 || { rm -f libmeep.so.23 && ln -s libmeep.so.23.0.1 libmeep.so.23; }; }) libtool: install: (cd /build/meep-openmpi-1.17.1/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libmeep.so.23.0.1 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.23.0.1 libmeep.so; }; }) @@ -3949,7 +3984,7 @@ make[4]: Entering directory '/build/meep-openmpi-1.17.1/scheme' make[5]: Entering directory '/build/meep-openmpi-1.17.1/scheme' /bin/mkdir -p '/build/meep-openmpi-1.17.1/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/meep-openmpi-1.17.1/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c meep '/build/meep-openmpi-1.17.1/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/meep-openmpi-1.17.1/debian/tmp/usr/bin/meep /bin/mkdir -p '/build/meep-openmpi-1.17.1/debian/tmp/usr/share/meep' @@ -3963,9 +3998,9 @@ make[4]: Entering directory '/build/meep-openmpi-1.17.1/python' make[5]: Entering directory '/build/meep-openmpi-1.17.1/python' /bin/mkdir -p '/build/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' - /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' + /bin/sh ../libtool --mode=install /usr/bin/install -c _meep.la '/build/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep' libtool: warning: relinking '_meep.la' -libtool: install: (cd /build/meep-openmpi-1.17.1/python; /bin/bash "/build/meep-openmpi-1.17.1/libtool" --tag CXX --mode=relink mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-openmpi-1.17.1/debian/tmp) +libtool: install: (cd /build/meep-openmpi-1.17.1/python; /bin/sh "/build/meep-openmpi-1.17.1/libtool" --tag CXX --mode=relink mpic++ -g -O2 -fdebug-prefix-map=/build/meep-openmpi-1.17.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -W -module -version-info 23:1:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.9/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -inst-prefix-dir /build/meep-openmpi-1.17.1/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/10/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/meep-openmpi-1.17.1/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lmeep -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/aarch64-linux-gnu/10 -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/10/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/10/../../.. -L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/10/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/10/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.23 -o .libs/_meep.so.23.0.1 libtool: install: /usr/bin/install -c .libs/_meep.so.23.0.1T /build/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep/_meep.so.23.0.1 libtool: install: (cd /build/meep-openmpi-1.17.1/debian/tmp/usr/lib/python3.9/site-packages/meep && { ln -s -f _meep.so.23.0.1 _meep.so.23 || { rm -f _meep.so.23 && ln -s _meep.so.23.0.1 _meep.so.23; }; }) @@ -4127,13 +4162,6 @@ ./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi ./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi/changelog ./debian/python3-meep-openmpi/usr/share/doc/python3-meep-openmpi/changelog.Debian -./debian/libmeep-openmpi23 -./debian/libmeep-openmpi23/usr -./debian/libmeep-openmpi23/usr/share -./debian/libmeep-openmpi23/usr/share/doc -./debian/libmeep-openmpi23/usr/share/doc/libmeep-openmpi23 -./debian/libmeep-openmpi23/usr/share/doc/libmeep-openmpi23/changelog -./debian/libmeep-openmpi23/usr/share/doc/libmeep-openmpi23/changelog.Debian ./debian/meep-openmpi ./debian/meep-openmpi/usr ./debian/meep-openmpi/usr/share @@ -4141,6 +4169,13 @@ ./debian/meep-openmpi/usr/share/doc/meep-openmpi ./debian/meep-openmpi/usr/share/doc/meep-openmpi/changelog ./debian/meep-openmpi/usr/share/doc/meep-openmpi/changelog.Debian +./debian/libmeep-openmpi23 +./debian/libmeep-openmpi23/usr +./debian/libmeep-openmpi23/usr/share +./debian/libmeep-openmpi23/usr/share/doc +./debian/libmeep-openmpi23/usr/share/doc/libmeep-openmpi23 +./debian/libmeep-openmpi23/usr/share/doc/libmeep-openmpi23/changelog +./debian/libmeep-openmpi23/usr/share/doc/libmeep-openmpi23/changelog.Debian ./debian/libmeep-openmpi-dev ./debian/libmeep-openmpi-dev/usr ./debian/libmeep-openmpi-dev/usr/share @@ -4344,80 +4379,80 @@ ./src/step_generic_stride1.o ./src/step_generic.lo ./src/step_generic.o -./src/meepgeom.lo -./src/meepgeom.o ./src/vec.lo ./src/vec.o +./src/meepgeom.lo ./src/structure.lo +./src/meepgeom.o ./src/structure.o ./src/GDSIIgeom.lo ./src/GDSIIgeom.o ./src/susceptibility.lo ./src/susceptibility.o -./src/mpb.lo -./src/mpb.o ./src/update_pols.lo ./src/update_pols.o ./src/update_eh.lo ./src/update_eh.o -./src/step_db.lo -./src/step_db.o +./src/mpb.lo +./src/mpb.o ./src/time.lo ./src/time.o -./src/near2far.lo ./src/structure_dump.lo ./src/structure_dump.o -./src/near2far.o +./src/step_db.lo +./src/step_db.o ./src/sources.lo ./src/sources.o +./src/near2far.lo +./src/near2far.o ./src/stress.lo ./src/stress.o ./src/mympi.lo ./src/mympi.o ./src/step.lo ./src/step.o -./src/random.lo -./src/random.o ./src/multilevel-atom.lo ./src/multilevel-atom.o ./src/monitor.lo -./src/integrate2.lo ./src/monitor.o +./src/integrate2.lo ./src/integrate2.o ./src/output_directory.lo ./src/output_directory.o -./src/integrate.lo -./src/integrate.o +./src/random.lo +./src/random.o +./src/h5fields.lo +./src/h5fields.o ./src/initialize.lo ./src/initialize.o +./src/integrate.lo +./src/integrate.o +./src/fields.lo ./src/loop_in_chunks.lo ./src/loop_in_chunks.o -./src/anisotropic_averaging.lo +./src/fields.o ./src/h5file.lo -./src/anisotropic_averaging.o ./src/h5file.o -./src/h5fields.lo -./src/h5fields.o +./src/anisotropic_averaging.lo +./src/anisotropic_averaging.o ./src/dft.lo -./src/fields.lo -./src/fields.o ./src/dft.o ./src/boundaries.lo ./src/boundaries.o +./src/energy_and_flux.lo +./src/energy_and_flux.o ./src/array_slice.lo ./src/array_slice.o ./src/cw_fields.lo ./src/cw_fields.o ./src/dft_ldos.lo ./src/dft_ldos.o -./src/energy_and_flux.lo -./src/energy_and_flux.o ./src/casimir.lo ./src/casimir.o -./src/bands.lo -./src/bands.o ./src/bicgstab.lo ./src/bicgstab.o +./src/bands.lo +./src/bands.o ./src/sphere-quad.h ./src/sphere_quad ./src/.libs @@ -4434,38 +4469,38 @@ ./src/.libs/GDSIIgeom.o ./src/.libs/structure.o ./src/.libs/update_pols.o -./src/.libs/mpb.o ./src/.libs/susceptibility.o +./src/.libs/mpb.o ./src/.libs/update_eh.o ./src/.libs/time.o -./src/.libs/step_db.o ./src/.libs/structure_dump.o +./src/.libs/step_db.o ./src/.libs/stress.o ./src/.libs/sources.o ./src/.libs/step.o ./src/.libs/near2far.o ./src/.libs/mympi.o +./src/.libs/multilevel-atom.o ./src/.libs/random.o ./src/.libs/output_directory.o -./src/.libs/multilevel-atom.o -./src/.libs/integrate2.o ./src/.libs/monitor.o -./src/.libs/integrate.o +./src/.libs/integrate2.o +./src/.libs/h5fields.o ./src/.libs/initialize.o +./src/.libs/integrate.o ./src/.libs/h5file.o ./src/.libs/loop_in_chunks.o -./src/.libs/h5fields.o ./src/.libs/fields.o -./src/.libs/dft.o -./src/.libs/anisotropic_averaging.o ./src/.libs/energy_and_flux.o +./src/.libs/anisotropic_averaging.o +./src/.libs/dft.o ./src/.libs/dft_ldos.o ./src/.libs/array_slice.o ./src/.libs/cw_fields.o ./src/.libs/boundaries.o ./src/.libs/casimir.o -./src/.libs/bands.o ./src/.libs/bicgstab.o +./src/.libs/bands.o ./src/sphere-quad.o ./src/step_generic_stride1.cpp ./src/Makefile @@ -4537,8 +4572,8 @@ ./scheme/.libs ./scheme/.libs/meep ./scheme/meep-meep_wrap.o -./scheme/meep-geom.o ./scheme/meep-structure.o +./scheme/meep-geom.o ./scheme/meep-ctl-io.o ./scheme/meep-meep.o ./scheme/meep-main.o @@ -5277,17 +5312,17 @@ dh_strip dh_makeshlibs dh_shlibdeps -dpkg-shlibdeps: warning: debian/python3-meep-openmpi/usr/lib/python3/dist-packages/meep/_meep.so.23.0.1 contains an unresolvable reference to symbol PyErr_SetObject: it's probably a plugin +dpkg-shlibdeps: warning: debian/python3-meep-openmpi/usr/lib/python3/dist-packages/meep/_meep.so.23.0.1 contains an unresolvable reference to symbol PySlice_GetIndices: it's probably a plugin dpkg-shlibdeps: warning: 108 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'meep-openmpi' in '../meep-openmpi_1.17.1-2_arm64.deb'. dpkg-deb: building package 'python3-meep-openmpi-dbgsym' in '../python3-meep-openmpi-dbgsym_1.17.1-2_arm64.deb'. -dpkg-deb: building package 'libmeep-openmpi23-dbgsym' in '../libmeep-openmpi23-dbgsym_1.17.1-2_arm64.deb'. dpkg-deb: building package 'meep-openmpi-dbgsym' in '../meep-openmpi-dbgsym_1.17.1-2_arm64.deb'. -dpkg-deb: building package 'meep-openmpi' in '../meep-openmpi_1.17.1-2_arm64.deb'. dpkg-deb: building package 'libmeep-openmpi23' in '../libmeep-openmpi23_1.17.1-2_arm64.deb'. +dpkg-deb: building package 'libmeep-openmpi23-dbgsym' in '../libmeep-openmpi23-dbgsym_1.17.1-2_arm64.deb'. dpkg-deb: building package 'libmeep-openmpi-dev' in '../libmeep-openmpi-dev_1.17.1-2_arm64.deb'. dpkg-deb: building package 'python3-meep-openmpi' in '../python3-meep-openmpi_1.17.1-2_arm64.deb'. dpkg-genbuildinfo --build=binary @@ -5297,12 +5332,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/31785/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/31785/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/18798 and its subdirectories -I: Current time: Sun Oct 9 20:59:36 -12 2022 -I: pbuilder-time-stamp: 1665392376 +I: removing directory /srv/workspace/pbuilder/31785 and its subdirectories +I: Current time: Tue Sep 7 17:01:48 +14 2021 +I: pbuilder-time-stamp: 1630983708