Diff of the two buildlogs: -- --- b1/build.log 2021-08-27 01:06:21.130438360 +0000 +++ b2/build.log 2021-08-27 01:11:44.894332025 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Sep 28 19:16:51 -12 2022 -I: pbuilder-time-stamp: 1664435811 +I: Current time: Fri Aug 27 15:06:24 +14 2021 +I: pbuilder-time-stamp: 1630026384 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./libbpp-seq_2.4.1-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.XWj_jOKB/trustedkeys.kbx': General error -gpgv: Signature made Wed Jul 22 21:42:25 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.Kk3gUIIS/trustedkeys.kbx': General error +gpgv: Signature made Thu Jul 23 23:42:25 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -29,135 +29,169 @@ dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2306/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/10751/tmp/hooks/D01_modify_environment starting +debug: Running on codethink12-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/10751/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/10751/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2306' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=10751 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qt2ki5JoZa/pbuilderrc_n3Od --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qt2ki5JoZa/b1 --logfile b1/build.log libbpp-seq_2.4.1-5.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.qt2ki5JoZa/pbuilderrc_DT9p --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.qt2ki5JoZa/b2 --logfile b2/build.log libbpp-seq_2.4.1-5.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink9-arm64 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Aug 4 2021 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Jul 28 2021 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Jul 28 2021 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Jul 28 2021 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Jul 28 2021 more - -rwsr-xr-x 1 root root 51360 Jul 28 2021 mount - -rwxr-xr-x 1 root root 14496 Jul 28 2021 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Sep 23 03:48 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Jul 28 2021 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Jul 28 2021 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Jul 28 2021 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless - -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew -I: user script /srv/workspace/pbuilder/2306/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Aug 5 10:25 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Jul 29 09:09 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Jul 29 09:09 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Jul 29 09:09 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Jul 29 09:09 more + -rwsr-xr-x 1 root root 51360 Jul 29 09:09 mount + -rwxr-xr-x 1 root root 14496 Jul 29 09:09 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Aug 27 15:06 sh -> bash + lrwxrwxrwx 1 root root 4 Aug 21 23:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Jul 29 09:09 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Jul 29 09:09 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Jul 29 09:09 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless + -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew +I: user script /srv/workspace/pbuilder/10751/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -252,7 +286,7 @@ Get: 51 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libbpp-core4 arm64 2.4.1-5 [514 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libbpp-core-dev arm64 2.4.1-5 [902 kB] -Fetched 27.5 MB in 1s (47.5 MB/s) +Fetched 27.5 MB in 0s (57.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -480,7 +514,8 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/libbpp-seq-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-seq_2.4.1-5_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/libbpp-seq-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbpp-seq_2.4.1-5_source.changes dpkg-buildpackage: info: source package libbpp-seq dpkg-buildpackage: info: source version 2.4.1-5 dpkg-buildpackage: info: source distribution unstable @@ -534,352 +569,352 @@ Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-seq-shared.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-seq-shared.dir/depend.internal". Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src/CMakeFiles/bpp-seq-shared.dir/depend.internal". Scanning dependencies of target bpp-seq-static -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/build -make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' Scanning dependencies of target bpp-seq-shared make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' make -f src/CMakeFiles/bpp-seq-shared.dir/build.make src/CMakeFiles/bpp-seq-shared.dir/build -[ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -[ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp -[ 1%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp +make -f src/CMakeFiles/bpp-seq-static.dir/build.make src/CMakeFiles/bpp-seq-static.dir/build make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -[ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.cpp -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/BinaryAlphabet.cpp -[ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security 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CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.cpp -[ 3%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetExceptions.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetExceptions.cpp +[ 2%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/AbstractAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AbstractAlphabet.cpp -[ 4%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o +[ 2%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/AlphabetTools.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/AlphabetTools.cpp +[ 3%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/BinaryAlphabet.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. 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/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DNA.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/DNA.cpp +[ 6%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/DefaultAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/DefaultAlphabet.cpp +[ 6%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/CaseMaskedAlphabet.cpp +[ 6%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/IntegerAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/IntegerAlphabet.cpp +[ 7%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Alphabet/LetterAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/LetterAlphabet.cpp +[ 8%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/CodonAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/CodonAlphabet.cpp -[ 6%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/DNA.cpp.o +[ 9%] Building CXX object 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cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/LexicalAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/LexicalAlphabet.cpp -[ 9%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o +[ 14%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/NumericAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/NumericAlphabet.cpp -[ 10%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o +[ 15%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/ProteicAlphabet.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Alphabet/ProteicAlphabet.cpp -[ 10%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Alphabet/RNA.cpp.o +[ 16%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex1Entry.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp +[ 20%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/App/SequenceApplicationTools.cpp.o -c 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src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/AlphabetIndex/AAIndex2Entry.cpp -[ 25%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/BLOSUM50.cpp.o -c 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+cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/GeneticCode.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/GeneticCode/GeneticCode.cpp +[ 37%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.cpp +[ 38%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Container/SequenceContainerIterator.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/Container/SequenceContainerIterator.cpp -[ 27%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.cpp.o -c 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src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/AlphabetIndex/SimpleScore.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/AlphabetIndex/SimpleScore.cpp -[ 32%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o +[ 43%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/GeneticCode/StandardGeneticCode.cpp +[ 43%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/DistanceMatrix.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/DistanceMatrix.cpp -[ 33%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o +[ 44%] Building CXX object src/CMakeFiles/bpp-seq-static.dir/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. 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CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SequenceWithQualityTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Site.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteExceptions.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SiteTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/StringSequenceTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolList.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/SymbolListTools.cpp.o CMakeFiles/bpp-seq-static.dir/Bpp/Seq/Transliterator.cpp.o [ 89%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SiteTools.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/SiteTools.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/StringSequenceTools.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/StringSequenceTools.cpp +/usr/bin/ranlib libbpp-seq.a [ 90%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolList.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/SymbolList.cpp +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +[ 90%] Built target bpp-seq-static [ 91%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src && /usr/bin/c++ -Dbpp_seq_shared_EXPORTS -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/SymbolListTools.cpp.o -c /build/libbpp-seq-2.4.1/src/Bpp/Seq/SymbolListTools.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-seq-shared.dir/Bpp/Seq/Transliterator.cpp.o @@ -891,117 +926,117 @@ make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' [ 92%] Built target bpp-seq-shared make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/depend +make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/depend +make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend +make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/depend +make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/depend make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_alignment_scores.dir/DependInfo.cmake --color= -make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/depend +make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/depend make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_alphabets.dir/DependInfo.cmake --color= -make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/depend -make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/depend +make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/depend make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test 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"/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_walker.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_walker.dir/depend.internal". +Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_bowker.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_bowker.dir/depend.internal". Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_alignment_scores.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_alignment_scores.dir/depend.internal". +Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_containers.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_containers.dir/depend.internal". Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_alignment_scores.dir/depend.internal". -Scanning dependencies of target test_alignment_scores -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/build -Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_bowker.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_bowker.dir/depend.internal". +Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_containers.dir/depend.internal". Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_bowker.dir/depend.internal". -make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_sequences.dir/DependInfo.cmake --color= +Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_walker.dir/depend.internal". Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_alphabets.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_alphabets.dir/depend.internal". Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_alphabets.dir/depend.internal". -Scanning dependencies of target test_alphabets +Scanning dependencies of target test_walker +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/build Scanning dependencies of target test_bowker +Scanning dependencies of target test_alphabets +Scanning dependencies of target test_containers +Scanning dependencies of target test_alignment_scores make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/depend make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_walker.dir/DependInfo.cmake --color= make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_containers.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_containers.dir/depend.internal". -Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_containers.dir/depend.internal". -make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_alphabets.dir/build.make test/CMakeFiles/test_alphabets.dir/build +make -f test/CMakeFiles/test_alignment_scores.dir/build.make test/CMakeFiles/test_alignment_scores.dir/build +make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/build make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/depend -Scanning dependencies of target test_containers make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/libbpp-seq-2.4.1 /build/libbpp-seq-2.4.1/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_io.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_containers.dir/build.make test/CMakeFiles/test_containers.dir/build make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_walker.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_walker.dir/depend.internal". -Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_walker.dir/depend.internal". +make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +[ 93%] Building CXX object test/CMakeFiles/test_containers.dir/test_containers.cpp.o +[ 93%] Building CXX object test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o +[ 94%] Building CXX object test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_sequences.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_sequences.dir/depend.internal". Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_sequences.dir/depend.internal". -[ 93%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o -Scanning dependencies of target test_walker -[ 94%] Building CXX object test/CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /build/libbpp-seq-2.4.1/test/test_bowker.cpp +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_containers.dir/test_containers.cpp.o -c /build/libbpp-seq-2.4.1/test/test_containers.cpp +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -c /build/libbpp-seq-2.4.1/test/test_alignment_scores.cpp cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -c /build/libbpp-seq-2.4.1/test/test_alphabets.cpp -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_walker.dir/build.make test/CMakeFiles/test_walker.dir/build -[ 94%] Building CXX object test/CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -Scanning dependencies of target test_sequences Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_io.dir/DependInfo.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_io.dir/depend.internal". Dependee "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test/CMakeFiles/test_io.dir/depend.internal". -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -c /build/libbpp-seq-2.4.1/test/test_alignment_scores.cpp -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/build Scanning dependencies of target test_io -make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +Scanning dependencies of target test_sequences make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_io.dir/build.make test/CMakeFiles/test_io.dir/build +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/test_sequences.dir/build.make test/CMakeFiles/test_sequences.dir/build +[ 95%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o +[ 96%] Building CXX object test/CMakeFiles/test_walker.dir/test_walker.cpp.o make[3]: Entering directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -[ 95%] Building CXX object test/CMakeFiles/test_containers.dir/test_containers.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_containers.dir/test_containers.cpp.o -c /build/libbpp-seq-2.4.1/test/test_containers.cpp -[ 96%] Building CXX object test/CMakeFiles/test_io.dir/test_io.cpp.o -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_io.dir/test_io.cpp.o -c /build/libbpp-seq-2.4.1/test/test_io.cpp -[ 97%] Building CXX object test/CMakeFiles/test_walker.dir/test_walker.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_walker.dir/test_walker.cpp.o -c /build/libbpp-seq-2.4.1/test/test_walker.cpp -[ 98%] Building CXX object test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /build/libbpp-seq-2.4.1/test/test_bowker.cpp +[ 97%] Building CXX object test/CMakeFiles/test_sequences.dir/test_sequences.cpp.o cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_sequences.dir/test_sequences.cpp.o -c /build/libbpp-seq-2.4.1/test/test_sequences.cpp +[ 98%] Building CXX object test/CMakeFiles/test_io.dir/test_io.cpp.o +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/c++ -I/build/libbpp-seq-2.4.1/src -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/test_io.dir/test_io.cpp.o -c /build/libbpp-seq-2.4.1/test/test_io.cpp [ 98%] Linking CXX executable test_containers cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_containers.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_containers.dir/test_containers.cpp.o -o test_containers -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 [ 99%] Linking CXX executable test_walker cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_walker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_walker.dir/test_walker.cpp.o -o test_walker -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_containers.dir/test_containers.cpp.o -o test_containers -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -[ 99%] Linking CXX executable test_sequences -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequences.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_sequences.dir/test_sequences.cpp.o -o test_sequences -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -[ 99%] Built target test_sequences -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' -[ 99%] Built target test_walker [ 99%] Built target test_containers +[ 99%] Linking CXX executable test_sequences +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequences.dir/link.txt --verbose=1 [ 99%] Linking CXX executable test_alphabets cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alphabets.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_sequences.dir/test_sequences.cpp.o -o test_sequences -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alphabets.dir/test_alphabets.cpp.o -o test_alphabets -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +[ 99%] Built target test_walker [ 99%] Linking CXX executable test_bowker cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +[ 99%] Built target test_sequences make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' [ 99%] Built target test_alphabets make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' [ 99%] Built target test_bowker +[ 99%] Linking CXX executable test_io +cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_io.dir/link.txt --verbose=1 [100%] Linking CXX executable test_alignment_scores cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_alignment_scores.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -o test_alignment_scores -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -[100%] Linking CXX executable test_io -cd /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_io.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_io.dir/test_io.cpp.o -o test_io -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -[100%] Built target test_alignment_scores +/usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/libbpp-seq-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_alignment_scores.dir/test_alignment_scores.cpp.o -o test_alignment_scores -Wl,-rpath,/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/src ../src/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' [100%] Built target test_io +make[3]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' +[100%] Built target test_alignment_scores make[2]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' @@ -1018,17 +1053,17 @@ Start 5: test_io Start 6: test_sequences Start 7: test_walker -1/7 Test #1: test_alignment_scores ............ Passed 0.09 sec -2/7 Test #2: test_alphabets ................... Passed 0.07 sec -3/7 Test #4: test_containers .................. Passed 0.06 sec -4/7 Test #6: test_sequences ................... Passed 0.04 sec -5/7 Test #7: test_walker ...................... Passed 0.05 sec -6/7 Test #5: test_io .......................... Passed 0.20 sec -7/7 Test #3: test_bowker ...................... Passed 85.65 sec +1/7 Test #1: test_alignment_scores ............ Passed 0.01 sec +2/7 Test #2: test_alphabets ................... Passed 0.01 sec +3/7 Test #4: test_containers .................. Passed 0.01 sec +4/7 Test #6: test_sequences ................... Passed 0.01 sec +5/7 Test #7: test_walker ...................... Passed 0.03 sec +6/7 Test #5: test_io .......................... Passed 0.10 sec +7/7 Test #3: test_bowker ...................... Passed 83.46 sec 100% tests passed, 0 tests failed out of 7 -Total Test time (real) = 85.69 sec +Total Test time (real) = 83.47 sec make[1]: Leaving directory '/build/libbpp-seq-2.4.1/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep @@ -1231,8 +1266,8 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-seq-dev' in '../libbpp-seq-dev_2.4.1-5_arm64.deb'. -dpkg-deb: building package 'libbpp-seq12-dbgsym' in '../libbpp-seq12-dbgsym_2.4.1-5_arm64.deb'. dpkg-deb: building package 'libbpp-seq12' in '../libbpp-seq12_2.4.1-5_arm64.deb'. +dpkg-deb: building package 'libbpp-seq12-dbgsym' in '../libbpp-seq12-dbgsym_2.4.1-5_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbpp-seq_2.4.1-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1240,12 +1275,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/10751/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/10751/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2306 and its subdirectories -I: Current time: Wed Sep 28 19:29:19 -12 2022 -I: pbuilder-time-stamp: 1664436559 +I: removing directory /srv/workspace/pbuilder/10751 and its subdirectories +I: Current time: Fri Aug 27 15:11:44 +14 2021 +I: pbuilder-time-stamp: 1630026704