Diff of the two buildlogs: -- --- b1/build.log 2021-08-15 12:00:09.047315208 +0000 +++ b2/build.log 2021-08-15 12:09:37.222027503 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Aug 14 23:55:14 -12 2021 -I: pbuilder-time-stamp: 1629028514 +I: Current time: Sun Sep 18 08:23:12 +14 2022 +I: pbuilder-time-stamp: 1663438992 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -16,8 +16,8 @@ I: copying [./libbiod_0.2.3+git20191120.b8eecef-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.goYqPcga/trustedkeys.kbx': General error -gpgv: Signature made Tue Jan 14 09:23:11 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.tHC9WYeS/trustedkeys.kbx': General error +gpgv: Signature made Wed Jan 15 11:23:11 2020 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key @@ -31,135 +31,169 @@ dpkg-source: info: applying 03_add-meson-build.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23652/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/27164/tmp/hooks/D01_modify_environment starting +debug: Running on codethink13-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/27164/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/27164/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' - DISTRIBUTION='' - HOME='/var/lib/jenkins' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/var/lib/jenkins + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23652' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=27164 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/pbuilderrc_9Id2 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/b1 --logfile b1/build.log libbiod_0.2.3+git20191120.b8eecef-2.dsc' - SUDO_GID='117' - SUDO_UID='110' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - USERNAME='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.16:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/pbuilderrc_mk5p --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/b2 --logfile b2/build.log --extrapackages usrmerge libbiod_0.2.3+git20191120.b8eecef-2.dsc' + SUDO_GID=117 + SUDO_UID=110 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + USERNAME=root + _='I: set' + http_proxy=http://192.168.101.16:3128 I: uname -a - Linux codethink16-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux + Linux i-capture-the-hostname 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 - -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat - -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp - -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod - -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown - -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp - -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash - -rwxr-xr-x 1 root root 101384 Sep 22 2020 date - -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd - -rwxr-xr-x 1 root root 89824 Sep 22 2020 df - -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir - -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo - -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep - -rwxr-xr-x 1 root root 31512 Sep 22 2020 false - -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep - -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt - -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount - -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip - -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe - -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip - -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln - -rwxr-xr-x 1 root root 52720 Feb 7 2020 login - -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls - -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk - -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir - -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod - -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp - -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more - -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount - -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint - -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd - lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash - -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink - -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm - -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir - -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 13 21:24 sh -> dash - -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep - -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty - -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su - -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync - -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar - -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch - -rwxr-xr-x 1 root root 31512 Sep 22 2020 true - -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server - -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount - -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname - -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress - -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir - -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat - -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp - -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep - -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep - -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce - -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep - -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless - -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore - -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew -I: user script /srv/workspace/pbuilder/23652/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1282512 Aug 5 2021 bash + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat + -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp + -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod + -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown + -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp + -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash + -rwxr-xr-x 1 root root 101384 Sep 23 2020 date + -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd + -rwxr-xr-x 1 root root 89824 Sep 23 2020 df + -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir + -rwxr-xr-x 1 root root 76152 Jul 29 2021 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo + -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep + -rwxr-xr-x 1 root root 31512 Sep 23 2020 false + -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep + -rwxr-xr-x 1 root root 64856 Jul 29 2021 findmnt + -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep + -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip + -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe + -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip + -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln + -rwxr-xr-x 1 root root 52720 Feb 8 2020 login + -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls + -rwxr-xr-x 1 root root 161960 Jul 29 2021 lsblk + -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir + -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod + -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp + -rwxr-xr-x 1 root root 51368 Jul 29 2021 more + -rwsr-xr-x 1 root root 51360 Jul 29 2021 mount + -rwxr-xr-x 1 root root 14496 Jul 29 2021 mountpoint + -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd + lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash + -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink + -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm + -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir + -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Sep 18 08:23 sh -> bash + lrwxrwxrwx 1 root root 4 Sep 18 05:48 sh.distrib -> dash + -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep + -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty + -rwsr-xr-x 1 root root 67776 Jul 29 2021 su + -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync + -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar + -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch + -rwxr-xr-x 1 root root 31512 Sep 23 2020 true + -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 30880 Jul 29 2021 umount + -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname + -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress + -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir + -rwxr-xr-x 1 root root 59584 Jul 29 2021 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat + -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp + -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff + -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep + -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep + -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce + -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep + -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless + -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore + -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew +I: user script /srv/workspace/pbuilder/27164/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -262,7 +296,7 @@ Get: 57 http://deb.debian.org/debian bullseye/main arm64 meson all 0.56.2-1 [437 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] -Fetched 57.5 MB in 2s (28.9 MB/s) +Fetched 57.5 MB in 1s (49.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) @@ -520,9 +554,42 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 157 kB of additional disk space will be used. +Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] +Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] +Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (1593 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23339 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1.1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... +Unpacking libtext-glob-perl (0.11-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_25_all.deb ... +Unpacking usrmerge (25) ... +Setting up libtext-glob-perl (0.11-1) ... +Setting up libnumber-compare-perl (0.03-1.1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (25) ... +The system has been successfully converted. +Processing triggers for man-db (2.9.4-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/libbiod-0.2.3+git20191120.b8eecef/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbiod_0.2.3+git20191120.b8eecef-2_source.changes +hostname: Temporary failure in name resolution +I: Running cd /build/libbiod-0.2.3+git20191120.b8eecef/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbiod_0.2.3+git20191120.b8eecef-2_source.changes dpkg-buildpackage: info: source package libbiod dpkg-buildpackage: info: source version 0.2.3+git20191120.b8eecef-2 dpkg-buildpackage: info: source distribution unstable @@ -575,56 +642,61 @@ dh_auto_build -O--buildsystem=meson cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j8 -v [1/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_doformat.d.o -c ../contrib/undead/doformat.d -[2/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_utf.d.o -c ../contrib/undead/utf.d -[3/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o -c ../bio/core/bgzf/chunk.d -[4/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_base.d.o -c ../bio/core/base.d -[5/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o -c ../bio/core/bgzf/constants.d -[6/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o -c ../bio/core/bgzf/compress.d +[2/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o -c ../bio/core/bgzf/chunk.d +[3/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o -c ../bio/core/bgzf/constants.d +[4/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_utf.d.o -c ../contrib/undead/utf.d +[5/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o -c ../bio/core/bgzf/compress.d +[6/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_base.d.o -c ../bio/core/base.d [7/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_cstream.d.o -c ../contrib/undead/cstream.d -[8/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o -c ../bio/core/bgzf/block.d -[9/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_call.d.o -c ../bio/core/call.d +[8/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_call.d.o -c ../bio/core/call.d +[9/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_decompress.d.o -c ../bio/core/decompress.d [10/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_genotype.d.o -c ../bio/core/genotype.d -[11/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_decompress.d.o -c ../bio/core/decompress.d -[12/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_kmer.d.o -c ../bio/core/kmer.d +[11/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_kmer.d.o -c ../bio/core/kmer.d +[12/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o -c ../bio/core/bgzf/block.d [13/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_region.d.o -c ../bio/core/region.d -[14/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o -c ../contrib/undead/internal/file.d -[15/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_tinymap.d.o -c ../bio/core/tinymap.d +[14/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_tinymap.d.o -c ../bio/core/tinymap.d +[15/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o -c ../bio/core/bgzf/virtualoffset.d [16/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_algo.d.o -c ../bio/core/utils/algo.d [17/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_exception.d.o -c ../bio/core/utils/exception.d -[18/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o -c ../bio/core/bgzf/outputstream.d -[19/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o -c ../bio/core/utils/memoize.d -[20/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o -c ../bio/core/bgzf/virtualoffset.d -[21/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_sequence.d.o -c ../bio/core/sequence.d -[22/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o -c ../bio/core/utils/outbuffer.d +[18/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o -c ../bio/core/utils/memoize.d +[19/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o -c ../contrib/undead/internal/file.d +[20/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_sequence.d.o -c ../bio/core/sequence.d +[21/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_format.d.o -c ../bio/core/utils/format.d +[22/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o -c ../bio/core/bgzf/outputstream.d [23/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o -c ../bio/core/utils/roundbuf.d -[24/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_format.d.o -c ../bio/core/utils/format.d -[25/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_range.d.o -c ../bio/core/utils/range.d -[26/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o -c ../bio/core/utils/switchendianness.d -[27/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o -c ../bio/core/utils/zlib.d +[24/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o -c ../bio/core/utils/outbuffer.d +[25/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o -c ../bio/core/utils/switchendianness.d +[26/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o -c ../bio/core/utils/zlib.d +[27/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_range.d.o -c 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../bio/std/experimental/hts/constants.d [32/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o -c ../bio/std/experimental/hts/hashing.d -[33/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o -c ../bio/core/utils/tmpfile.d -[34/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o -c ../bio/std/experimental/hts/logger.d -[35/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o -c ../bio/core/bgzf/inputstream.d +[33/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o -c ../bio/std/experimental/hts/logger.d +[34/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o -c ../bio/core/utils/tmpfile.d +[35/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o -c ../bio/std/experimental/hts/pileup.d [36/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o -c ../bio/std/experimental/hts/reads.d [37/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o -c ../bio/std/experimental/hts/bam/writer.d -[38/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o -c ../bio/std/experimental/hts/pileup.d -[39/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o -c ../bio/std/experimental/hts/unpack.d -[40/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fastq.d.o -c ../bio/std/file/fastq.d -[41/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o -c ../bio/std/experimental/hts/bgzf_writer.d -[42/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o -c ../bio/std/genotype/maf.d +[38/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o -c ../bio/core/bgzf/inputstream.d +[39/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fastq.d.o -c ../bio/std/file/fastq.d +[40/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o -c ../bio/std/experimental/hts/bgzf_writer.d +[41/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o -c ../bio/std/genotype/maf.d +[42/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o -c ../bio/std/experimental/hts/unpack.d [43/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o -c ../bio/std/hts/bam/bai/bin.d [44/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o -c ../bio/std/hts/bam/abstractreader.d -[45/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_stream.d.o -c ../contrib/undead/stream.d -[46/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o -c ../bio/std/hts/bam/baifile.d -[47/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o -c ../bio/std/hts/bam/baseinfo.d +[45/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o -c ../bio/std/hts/bam/baifile.d +[46/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o -c ../bio/std/hts/bam/baseinfo.d +[47/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/contrib_undead_stream.d.o -c ../contrib/undead/stream.d [48/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o -c ../bio/std/hts/bam/constants.d -[49/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o -c ../bio/std/hts/bam/cigar.d -[50/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o -c ../bio/std/hts/bam/md/core.d -[51/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o -c ../bio/std/experimental/hts/bam/reader.d +[49/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o -c ../bio/std/hts/bam/md/core.d +[50/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o -c ../bio/std/hts/bam/cigar.d +[51/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o -c ../bio/std/experimental/hts/bgzf.d +../bio/std/experimental/hts/bgzf.d(202): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. +../bio/std/experimental/hts/bgzf.d(212): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. +../bio/std/experimental/hts/bgzf.d(418): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. +../bio/std/experimental/hts/bgzf.d(425): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. +[52/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o -c ../bio/std/experimental/hts/bam/reader.d ../bio/std/experimental/hts/bam/reader.d(237): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(245): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(246): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. @@ -652,41 +724,40 @@ ../bio/std/experimental/hts/bam/reader.d(392): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(412): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(491): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. -[52/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o -c ../bio/std/hts/bam/md/parse.d +[53/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o -c ../bio/std/hts/bam/md/reconstruct.d +[54/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o -c ../bio/std/hts/bam/md/parse.d ../bio/std/hts/bam/md/parse.d(49): Deprecation: returning this._cached_front escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(49): perhaps annotate the parameter with return ../bio/std/hts/bam/md/parse.d(53): Deprecation: returning this._cached_back escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(53): perhaps annotate the parameter with return -[53/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o -c ../bio/std/experimental/hts/bgzf.d -../bio/std/experimental/hts/bgzf.d(202): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. -../bio/std/experimental/hts/bgzf.d(212): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. -../bio/std/experimental/hts/bgzf.d(418): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. -../bio/std/experimental/hts/bgzf.d(425): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. -[54/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o -c ../bio/std/hts/bam/md/reconstruct.d -[55/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o -c ../bio/std/hts/bam/pileup.d -[56/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fasta.d.o -c ../bio/std/file/fasta.d -[57/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o -c ../bio/std/hts/bam/bai/indexing.d -[58/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o -c ../bio/std/hts/bam/md/operation.d +[55/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o -c ../bio/std/hts/bam/bai/indexing.d +[56/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o -c ../bio/std/hts/bam/pileup.d +[57/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fai.d.o -c ../bio/std/file/fai.d +[58/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o -c ../bio/std/genotype/snp.d +[59/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fasta.d.o -c ../bio/std/file/fasta.d +[60/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o -c ../bio/std/hts/bam/readrange.d +[61/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o -c ../bio/std/hts/bam/referenceinfo.d +[62/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o -c ../bio/std/hts/bam/region.d +[63/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o -c ../bio/std/hts/bam/reference.d +[64/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o -c ../bio/std/hts/bam/md/operation.d ../bio/std/hts/bam/md/operation.d(57): Deprecation: returning this._match escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(57): perhaps annotate the parameter with return ../bio/std/hts/bam/md/operation.d(72): Deprecation: returning this._deletion escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(72): perhaps annotate the parameter with return -[59/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o -c ../bio/std/genotype/snp.d -[60/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_file_fai.d.o -c ../bio/std/file/fai.d -[61/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o -c ../bio/std/hts/bam/readrange.d -[62/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o -c ../bio/std/hts/bam/referenceinfo.d -[63/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o -c ../bio/std/hts/bam/region.d -[64/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o -c ../bio/std/hts/bam/reference.d [65/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o -c ../bio/std/hts/bam/splitter.d -[66/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o -c ../bio/std/hts/bam/validation/samheader.d -[67/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o -c ../bio/std/hts/bam/randomaccessmanager.d +[66/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o -c ../bio/std/hts/bam/randomaccessmanager.d +[67/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o -c ../bio/std/hts/bam/validation/samheader.d [68/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o -c ../bio/std/hts/bam/writer.d [69/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o -c ../bio/std/hts/iontorrent/flowindex.d [70/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o -c ../bio/std/hts/bam/reader.d [71/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o -c ../bio/std/hts/bam/read.d [72/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o -c ../bio/std/hts/iontorrent/flowcall.d -[73/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o -c ../bio/std/hts/bam/validation/alignment.d -[74/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o -c ../bio/std/hts/sam/utils/recordparser.d +[73/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o -c ../bio/std/hts/bam/tagvalue.d +[74/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o -c ../bio/std/hts/snpcallers/maq.d +../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. +../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. +../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. +[75/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o -c ../bio/std/hts/sam/utils/recordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable @@ -723,30 +794,25 @@ sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable -[75/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o -c ../bio/std/hts/bam/tagvalue.d [76/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o -c ../bio/std/hts/bam/multireader.d [77/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o -c ../bio/std/hts/utils/array.d -[78/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o -c ../bio/std/hts/utils/graph.d -[79/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o -c ../bio/std/hts/snpcallers/simple.d -[80/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o -c ../bio/std/hts/snpcallers/maq.d -../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. -../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. -../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. -[81/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_pileup.d.o -c ../bio/std/hts/bam/pileup.d +[78/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o -c ../bio/std/hts/bam/validation/alignment.d +[79/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o -c ../bio/std/hts/utils/graph.d +[80/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o -c ../bio/std/hts/snpcallers/simple.d +[81/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o -c ../bio/std/hts/sam/reader.d [82/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_block.d.o -c ../bio/std/maf/block.d -[83/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o -c ../bio/std/hts/thirdparty/msgpack.d -../bio/std/hts/thirdparty/msgpack.d(1116): Deprecation: returning this.vecList_ escapes a reference to parameter this -../bio/std/hts/thirdparty/msgpack.d(1116): perhaps annotate the parameter with return -[84/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o -c ../bio/std/hts/utils/value.d +[83/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o -c ../bio/std/hts/utils/value.d +[84/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_pileup.d.o -c ../bio/std/hts/bam/pileup.d [85/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_constants.d.o -c ../bio/std/sff/constants.d -[86/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_index.d.o -c ../bio/std/sff/index.d -[87/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_range_splitter.d.o -c ../bio/std/range/splitter.d +[86/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_range_splitter.d.o -c ../bio/std/range/splitter.d +[87/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_index.d.o -c ../bio/std/sff/index.d [88/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_read.d.o -c ../bio/std/sff/read.d -[89/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_reader.d.o -c ../bio/std/maf/reader.d -[90/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_reader.d.o -c ../bio/std/sff/reader.d -[91/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o -c ../bio/std/sff/utils/roundup.d -[92/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o -c ../bio/std/hts/sam/reader.d -[93/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o -c ../bio/std/hts/sam/utils/fastrecordparser.d +[89/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o -c ../bio/std/hts/sam/header.d +[90/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o -c ../bio/std/sff/utils/roundup.d +[91/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o -c ../bio/std/hts/thirdparty/msgpack.d +../bio/std/hts/thirdparty/msgpack.d(1116): Deprecation: returning this.vecList_ escapes a reference to parameter this +../bio/std/hts/thirdparty/msgpack.d(1116): perhaps annotate the parameter with return +[92/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o -c ../bio/std/hts/sam/utils/fastrecordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable @@ -783,40 +849,40 @@ sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable -[94/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_parser.d.o -c ../bio/std/maf/parser.d -[95/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_utf.d.o -c ../contrib/undead/utf.d -[96/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o -c ../bio/std/sff/readrange.d +[93/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_utf.d.o -c ../contrib/undead/utf.d +[94/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o -c ../bio/std/sff/readrange.d +[95/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_writer.d.o -c ../bio/std/sff/writer.d +[96/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_reader.d.o -c ../bio/std/sff/reader.d [97/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_constants.d.o -c ../bio/core/bgzf/constants.d -[98/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o -c ../bio/std/hts/sam/header.d +[98/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_parser.d.o -c ../bio/std/maf/parser.d [99/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_base.d.o -c ../bio/core/base.d [100/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_compress.d.o -c ../bio/core/bgzf/compress.d -[101/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_sff_writer.d.o -c ../bio/std/sff/writer.d -[102/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_chunk.d.o -c ../bio/core/bgzf/chunk.d +[101/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_chunk.d.o -c ../bio/core/bgzf/chunk.d +[102/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_maf_reader.d.o -c ../bio/std/maf/reader.d [103/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_block.d.o -c ../bio/core/bgzf/block.d [104/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_cstream.d.o -c ../contrib/undead/cstream.d ../contrib/undead/cstream.d(206): Deprecation: variable line is shadowing variable contrib.undead.cstream.CFile.__unittest_L151_C3.line. Rename the foreach variable. ../contrib/undead/cstream.d(216): Deprecation: variable line is shadowing variable contrib.undead.cstream.CFile.__unittest_L151_C3.line. Rename the foreach variable. -[105/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_internal_file.d.o -c ../contrib/undead/internal/file.d +[105/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_call.d.o -c ../bio/core/call.d [106/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_virtualoffset.d.o -c ../bio/core/bgzf/virtualoffset.d -[107/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_call.d.o -c ../bio/core/call.d -[108/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_doformat.d.o -c ../contrib/undead/doformat.d -[109/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_region.d.o -c ../bio/core/region.d -[110/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_outputstream.d.o -c ../bio/core/bgzf/outputstream.d -[111/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_genotype.d.o -c ../bio/core/genotype.d +[107/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_doformat.d.o -c ../contrib/undead/doformat.d +[108/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_internal_file.d.o -c ../contrib/undead/internal/file.d +[109/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_outputstream.d.o -c ../bio/core/bgzf/outputstream.d +[110/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_genotype.d.o -c ../bio/core/genotype.d +[111/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_region.d.o -c ../bio/core/region.d [112/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_algo.d.o -c ../bio/core/utils/algo.d [113/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_kmer.d.o -c ../bio/core/kmer.d [114/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_exception.d.o -c ../bio/core/utils/exception.d [115/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_bgzf_inputstream.d.o -c ../bio/core/bgzf/inputstream.d -[116/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_decompress.d.o -c ../bio/core/decompress.d -[117/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_outbuffer.d.o -c ../bio/core/utils/outbuffer.d -[118/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_bylinefast.d.o -c ../bio/core/utils/bylinefast.d -[119/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_sequence.d.o -c ../bio/core/sequence.d -[120/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_format.d.o -c ../bio/core/utils/format.d -[121/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_roundbuf.d.o -c ../bio/core/utils/roundbuf.d +[116/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_sequence.d.o -c ../bio/core/sequence.d +[117/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_decompress.d.o -c ../bio/core/decompress.d +[118/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_format.d.o -c ../bio/core/utils/format.d +[119/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_outbuffer.d.o -c ../bio/core/utils/outbuffer.d +[120/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_memoize.d.o -c ../bio/core/utils/memoize.d +[121/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_bylinefast.d.o -c ../bio/core/utils/bylinefast.d [122/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_switchendianness.d.o -c ../bio/core/utils/switchendianness.d -[123/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_memoize.d.o -c ../bio/core/utils/memoize.d -[124/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_zlib.d.o -c ../bio/core/utils/zlib.d -[125/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_tinymap.d.o -c ../bio/core/tinymap.d +[123/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_roundbuf.d.o -c ../bio/core/utils/roundbuf.d +[124/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_tinymap.d.o -c ../bio/core/tinymap.d ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. @@ -836,36 +902,42 @@ ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. -[126/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o -c ../bio/std/hts/utils/samheadermerger.d +[125/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_zlib.d.o -c ../bio/core/utils/zlib.d +[126/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_header.d.o -c ../bio/std/experimental/hts/bam/header.d +[127/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_stream.d.o -c ../bio/core/utils/stream.d +[128/199] ldc2 -I=libbiod.so.0.2.3.p -I=. -I=.. -enable-color -wi -O -g -release -wi -relocation-model=pic -O3 -release -enable-inlining -boundscheck=off -of=libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o -c ../bio/std/hts/utils/samheadermerger.d ../bio/std/hts/utils/samheadermerger.d(217): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(222): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(217): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/std/hts/utils/samheadermerger.d(222): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. -[127/199] rm -f libbiod.a && ar csrD libbiod.a libbiod.so.0.2.3.p/contrib_undead_cstream.d.o libbiod.so.0.2.3.p/contrib_undead_doformat.d.o libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o libbiod.so.0.2.3.p/contrib_undead_stream.d.o libbiod.so.0.2.3.p/contrib_undead_utf.d.o libbiod.so.0.2.3.p/bio_core_base.d.o libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o libbiod.so.0.2.3.p/bio_core_call.d.o libbiod.so.0.2.3.p/bio_core_decompress.d.o libbiod.so.0.2.3.p/bio_core_genotype.d.o libbiod.so.0.2.3.p/bio_core_kmer.d.o libbiod.so.0.2.3.p/bio_core_region.d.o libbiod.so.0.2.3.p/bio_core_sequence.d.o libbiod.so.0.2.3.p/bio_core_tinymap.d.o libbiod.so.0.2.3.p/bio_core_utils_algo.d.o libbiod.so.0.2.3.p/bio_core_utils_bylinefast.d.o libbiod.so.0.2.3.p/bio_core_utils_exception.d.o libbiod.so.0.2.3.p/bio_core_utils_format.d.o libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o libbiod.so.0.2.3.p/bio_core_utils_range.d.o libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o libbiod.so.0.2.3.p/bio_core_utils_stream.d.o libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_header.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_constants.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o libbiod.so.0.2.3.p/bio_std_file_fai.d.o libbiod.so.0.2.3.p/bio_std_file_fasta.d.o libbiod.so.0.2.3.p/bio_std_file_fastq.d.o libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o libbiod.so.0.2.3.p/bio_std_maf_block.d.o libbiod.so.0.2.3.p/bio_std_maf_parser.d.o libbiod.so.0.2.3.p/bio_std_maf_reader.d.o libbiod.so.0.2.3.p/bio_std_range_splitter.d.o libbiod.so.0.2.3.p/bio_std_sff_constants.d.o libbiod.so.0.2.3.p/bio_std_sff_index.d.o libbiod.so.0.2.3.p/bio_std_sff_read.d.o libbiod.so.0.2.3.p/bio_std_sff_reader.d.o libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o libbiod.so.0.2.3.p/bio_std_sff_writer.d.o -[128/199] ldc2 -of=libbiod.so.0.2.3 libbiod.so.0.2.3.p/contrib_undead_cstream.d.o libbiod.so.0.2.3.p/contrib_undead_doformat.d.o libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o libbiod.so.0.2.3.p/contrib_undead_stream.d.o libbiod.so.0.2.3.p/contrib_undead_utf.d.o libbiod.so.0.2.3.p/bio_core_base.d.o libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o libbiod.so.0.2.3.p/bio_core_call.d.o libbiod.so.0.2.3.p/bio_core_decompress.d.o libbiod.so.0.2.3.p/bio_core_genotype.d.o libbiod.so.0.2.3.p/bio_core_kmer.d.o libbiod.so.0.2.3.p/bio_core_region.d.o libbiod.so.0.2.3.p/bio_core_sequence.d.o libbiod.so.0.2.3.p/bio_core_tinymap.d.o libbiod.so.0.2.3.p/bio_core_utils_algo.d.o libbiod.so.0.2.3.p/bio_core_utils_bylinefast.d.o libbiod.so.0.2.3.p/bio_core_utils_exception.d.o libbiod.so.0.2.3.p/bio_core_utils_format.d.o libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o libbiod.so.0.2.3.p/bio_core_utils_range.d.o libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o libbiod.so.0.2.3.p/bio_core_utils_stream.d.o libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_header.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_constants.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o libbiod.so.0.2.3.p/bio_std_file_fai.d.o libbiod.so.0.2.3.p/bio_std_file_fasta.d.o libbiod.so.0.2.3.p/bio_std_file_fastq.d.o libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o libbiod.so.0.2.3.p/bio_std_maf_block.d.o libbiod.so.0.2.3.p/bio_std_maf_parser.d.o libbiod.so.0.2.3.p/bio_std_maf_reader.d.o libbiod.so.0.2.3.p/bio_std_range_splitter.d.o libbiod.so.0.2.3.p/bio_std_sff_constants.d.o libbiod.so.0.2.3.p/bio_std_sff_index.d.o libbiod.so.0.2.3.p/bio_std_sff_read.d.o libbiod.so.0.2.3.p/bio_std_sff_reader.d.o libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o libbiod.so.0.2.3.p/bio_std_sff_writer.d.o -L=-soname -L=libbiod.so.0 -L=--allow-shlib-undefined -link-defaultlib-shared -shared -relocation-model=pic -O -g -release -wi -L=-z -L=relro -L=-lz -[129/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_stream.d.o -c ../bio/core/utils/stream.d +[129/199] rm -f libbiod.a && ar csrD libbiod.a libbiod.so.0.2.3.p/contrib_undead_cstream.d.o libbiod.so.0.2.3.p/contrib_undead_doformat.d.o libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o libbiod.so.0.2.3.p/contrib_undead_stream.d.o libbiod.so.0.2.3.p/contrib_undead_utf.d.o libbiod.so.0.2.3.p/bio_core_base.d.o libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o libbiod.so.0.2.3.p/bio_core_call.d.o libbiod.so.0.2.3.p/bio_core_decompress.d.o libbiod.so.0.2.3.p/bio_core_genotype.d.o libbiod.so.0.2.3.p/bio_core_kmer.d.o libbiod.so.0.2.3.p/bio_core_region.d.o libbiod.so.0.2.3.p/bio_core_sequence.d.o libbiod.so.0.2.3.p/bio_core_tinymap.d.o libbiod.so.0.2.3.p/bio_core_utils_algo.d.o libbiod.so.0.2.3.p/bio_core_utils_bylinefast.d.o libbiod.so.0.2.3.p/bio_core_utils_exception.d.o libbiod.so.0.2.3.p/bio_core_utils_format.d.o libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o libbiod.so.0.2.3.p/bio_core_utils_range.d.o libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o libbiod.so.0.2.3.p/bio_core_utils_stream.d.o libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_header.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_constants.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o libbiod.so.0.2.3.p/bio_std_file_fai.d.o libbiod.so.0.2.3.p/bio_std_file_fasta.d.o libbiod.so.0.2.3.p/bio_std_file_fastq.d.o libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o libbiod.so.0.2.3.p/bio_std_maf_block.d.o libbiod.so.0.2.3.p/bio_std_maf_parser.d.o libbiod.so.0.2.3.p/bio_std_maf_reader.d.o libbiod.so.0.2.3.p/bio_std_range_splitter.d.o libbiod.so.0.2.3.p/bio_std_sff_constants.d.o libbiod.so.0.2.3.p/bio_std_sff_index.d.o libbiod.so.0.2.3.p/bio_std_sff_read.d.o libbiod.so.0.2.3.p/bio_std_sff_reader.d.o libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o libbiod.so.0.2.3.p/bio_std_sff_writer.d.o [130/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_tmpfile.d.o -c ../bio/core/utils/tmpfile.d [131/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_constants.d.o -c ../bio/std/experimental/hts/constants.d -[132/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_range.d.o -c ../bio/core/utils/range.d -[133/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_header.d.o -c ../bio/std/experimental/hts/bam/header.d -[134/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_logger.d.o -c ../bio/std/experimental/hts/logger.d -[135/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_writer.d.o -c ../bio/std/experimental/hts/bam/writer.d +[132/199] ldc2 -of=libbiod.so.0.2.3 libbiod.so.0.2.3.p/contrib_undead_cstream.d.o libbiod.so.0.2.3.p/contrib_undead_doformat.d.o libbiod.so.0.2.3.p/contrib_undead_internal_file.d.o libbiod.so.0.2.3.p/contrib_undead_stream.d.o libbiod.so.0.2.3.p/contrib_undead_utf.d.o libbiod.so.0.2.3.p/bio_core_base.d.o libbiod.so.0.2.3.p/bio_core_bgzf_block.d.o libbiod.so.0.2.3.p/bio_core_bgzf_chunk.d.o libbiod.so.0.2.3.p/bio_core_bgzf_compress.d.o libbiod.so.0.2.3.p/bio_core_bgzf_constants.d.o libbiod.so.0.2.3.p/bio_core_bgzf_inputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_outputstream.d.o libbiod.so.0.2.3.p/bio_core_bgzf_virtualoffset.d.o libbiod.so.0.2.3.p/bio_core_call.d.o libbiod.so.0.2.3.p/bio_core_decompress.d.o libbiod.so.0.2.3.p/bio_core_genotype.d.o libbiod.so.0.2.3.p/bio_core_kmer.d.o libbiod.so.0.2.3.p/bio_core_region.d.o libbiod.so.0.2.3.p/bio_core_sequence.d.o libbiod.so.0.2.3.p/bio_core_tinymap.d.o libbiod.so.0.2.3.p/bio_core_utils_algo.d.o libbiod.so.0.2.3.p/bio_core_utils_bylinefast.d.o libbiod.so.0.2.3.p/bio_core_utils_exception.d.o libbiod.so.0.2.3.p/bio_core_utils_format.d.o libbiod.so.0.2.3.p/bio_core_utils_memoize.d.o libbiod.so.0.2.3.p/bio_core_utils_outbuffer.d.o libbiod.so.0.2.3.p/bio_core_utils_range.d.o libbiod.so.0.2.3.p/bio_core_utils_roundbuf.d.o libbiod.so.0.2.3.p/bio_core_utils_stream.d.o libbiod.so.0.2.3.p/bio_core_utils_switchendianness.d.o libbiod.so.0.2.3.p/bio_core_utils_tmpfile.d.o libbiod.so.0.2.3.p/bio_core_utils_zlib.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_header.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_bgzf_writer.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_constants.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_hashing.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_logger.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_pileup.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_reads.d.o libbiod.so.0.2.3.p/bio_std_experimental_hts_unpack.d.o libbiod.so.0.2.3.p/bio_std_file_fai.d.o libbiod.so.0.2.3.p/bio_std_file_fasta.d.o libbiod.so.0.2.3.p/bio_std_file_fastq.d.o libbiod.so.0.2.3.p/bio_std_genotype_maf.d.o libbiod.so.0.2.3.p/bio_std_genotype_snp.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_abstractreader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_bin.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baifile.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_bai_indexing.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_baseinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_cigar.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_constants.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_core.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_operation.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_parse.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_md_reconstruct.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_multireader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_pileup.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_randomaccessmanager.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_read.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_readrange.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_reference.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_referenceinfo.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_region.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_splitter.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_tagvalue.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_alignment.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_validation_samheader.d.o libbiod.so.0.2.3.p/bio_std_hts_bam_writer.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowcall.d.o libbiod.so.0.2.3.p/bio_std_hts_iontorrent_flowindex.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_header.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_reader.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_fastrecordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_sam_utils_recordparser.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_maq.d.o libbiod.so.0.2.3.p/bio_std_hts_snpcallers_simple.d.o libbiod.so.0.2.3.p/bio_std_hts_thirdparty_msgpack.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_array.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_graph.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_samheadermerger.d.o libbiod.so.0.2.3.p/bio_std_hts_utils_value.d.o libbiod.so.0.2.3.p/bio_std_maf_block.d.o libbiod.so.0.2.3.p/bio_std_maf_parser.d.o libbiod.so.0.2.3.p/bio_std_maf_reader.d.o libbiod.so.0.2.3.p/bio_std_range_splitter.d.o libbiod.so.0.2.3.p/bio_std_sff_constants.d.o libbiod.so.0.2.3.p/bio_std_sff_index.d.o libbiod.so.0.2.3.p/bio_std_sff_read.d.o libbiod.so.0.2.3.p/bio_std_sff_reader.d.o libbiod.so.0.2.3.p/bio_std_sff_readrange.d.o libbiod.so.0.2.3.p/bio_std_sff_utils_roundup.d.o libbiod.so.0.2.3.p/bio_std_sff_writer.d.o -L=-soname -L=libbiod.so.0 -L=--allow-shlib-undefined -link-defaultlib-shared -shared -relocation-model=pic -O -g -release -wi -L=-z -L=relro -L=-lz +[133/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_logger.d.o -c ../bio/std/experimental/hts/logger.d +[134/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_writer.d.o -c ../bio/std/experimental/hts/bam/writer.d +[135/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_hashing.d.o -c ../bio/std/experimental/hts/hashing.d [136/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_reads.d.o -c ../bio/std/experimental/hts/reads.d -[137/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_hashing.d.o -c ../bio/std/experimental/hts/hashing.d -[138/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_unpack.d.o -c ../bio/std/experimental/hts/unpack.d -[139/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bgzf_writer.d.o -c ../bio/std/experimental/hts/bgzf_writer.d -[140/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_pileup.d.o -c ../bio/std/experimental/hts/pileup.d +[137/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_core_utils_range.d.o -c ../bio/core/utils/range.d +[138/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bgzf_writer.d.o -c ../bio/std/experimental/hts/bgzf_writer.d +[139/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_pileup.d.o -c ../bio/std/experimental/hts/pileup.d +[140/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_unpack.d.o -c ../bio/std/experimental/hts/unpack.d [141/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_genotype_maf.d.o -c ../bio/std/genotype/maf.d [142/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fastq.d.o -c ../bio/std/file/fastq.d [143/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_bai_bin.d.o -c ../bio/std/hts/bam/bai/bin.d -[144/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_stream.d.o -c ../contrib/undead/stream.d +[144/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_baifile.d.o -c ../bio/std/hts/bam/baifile.d +[145/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_abstractreader.d.o -c ../bio/std/hts/bam/abstractreader.d +[146/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/contrib_undead_stream.d.o -c ../contrib/undead/stream.d ../contrib/undead/stream.d(2192): Deprecation: variable line is shadowing variable contrib.undead.stream.File.__unittest_L2139_C3.line. Rename the foreach variable. ../contrib/undead/stream.d(2202): Deprecation: variable line is shadowing variable contrib.undead.stream.File.__unittest_L2139_C3.line. Rename the foreach variable. -[145/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_abstractreader.d.o -c ../bio/std/hts/bam/abstractreader.d -[146/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_baifile.d.o -c ../bio/std/hts/bam/baifile.d -[147/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_baseinfo.d.o -c ../bio/std/hts/bam/baseinfo.d +[147/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bgzf.d.o -c ../bio/std/experimental/hts/bgzf.d +../bio/std/experimental/hts/bgzf.d(202): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. +../bio/std/experimental/hts/bgzf.d(212): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. +../bio/std/experimental/hts/bgzf.d(418): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. +../bio/std/experimental/hts/bgzf.d(425): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. [148/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_constants.d.o -c ../bio/std/hts/bam/constants.d -[149/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_reader.d.o -c ../bio/std/experimental/hts/bam/reader.d +[149/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_baseinfo.d.o -c ../bio/std/hts/bam/baseinfo.d +[150/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bam_reader.d.o -c ../bio/std/experimental/hts/bam/reader.d ../bio/std/experimental/hts/bam/reader.d(237): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(245): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(246): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. @@ -893,65 +965,61 @@ ../bio/std/experimental/hts/bam/reader.d(392): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(412): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. ../bio/std/experimental/hts/bam/reader.d(491): Deprecation: function std.typecons.Nullable!(ReadBlob).Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. -[150/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_experimental_hts_bgzf.d.o -c ../bio/std/experimental/hts/bgzf.d -../bio/std/experimental/hts/bgzf.d(202): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. -../bio/std/experimental/hts/bgzf.d(212): Deprecation: function std.typecons.Nullable!ulong.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. -../bio/std/experimental/hts/bgzf.d(418): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. -../bio/std/experimental/hts/bgzf.d(425): Deprecation: function std.typecons.Nullable!int.Nullable.get_ is deprecated - Implicit conversion with alias Nullable.get this will be removed after 2.096. Please use .get explicitly. [151/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_core.d.o -c ../bio/std/hts/bam/md/core.d -[152/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fasta.d.o -c ../bio/std/file/fasta.d -[153/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_genotype_snp.d.o -c ../bio/std/genotype/snp.d -[154/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_cigar.d.o -c ../bio/std/hts/bam/cigar.d -[155/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fai.d.o -c ../bio/std/file/fai.d +[152/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_cigar.d.o -c ../bio/std/hts/bam/cigar.d +[153/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fai.d.o -c ../bio/std/file/fai.d +[154/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_genotype_snp.d.o -c ../bio/std/genotype/snp.d +[155/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_file_fasta.d.o -c ../bio/std/file/fasta.d [156/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_parse.d.o -c ../bio/std/hts/bam/md/parse.d ../bio/std/hts/bam/md/parse.d(49): Deprecation: returning this._cached_front escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(49): perhaps annotate the parameter with return ../bio/std/hts/bam/md/parse.d(53): Deprecation: returning this._cached_back escapes a reference to parameter this ../bio/std/hts/bam/md/parse.d(53): perhaps annotate the parameter with return [157/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_bai_indexing.d.o -c ../bio/std/hts/bam/bai/indexing.d -[158/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_operation.d.o -c ../bio/std/hts/bam/md/operation.d +[158/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_readrange.d.o -c ../bio/std/hts/bam/readrange.d +[159/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_operation.d.o -c ../bio/std/hts/bam/md/operation.d ../bio/std/hts/bam/md/operation.d(57): Deprecation: returning this._match escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(57): perhaps annotate the parameter with return ../bio/std/hts/bam/md/operation.d(72): Deprecation: returning this._deletion escapes a reference to parameter this ../bio/std/hts/bam/md/operation.d(72): perhaps annotate the parameter with return -[159/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_readrange.d.o -c ../bio/std/hts/bam/readrange.d [160/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_region.d.o -c ../bio/std/hts/bam/region.d [161/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_referenceinfo.d.o -c ../bio/std/hts/bam/referenceinfo.d [162/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_splitter.d.o -c ../bio/std/hts/bam/splitter.d [163/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_reference.d.o -c ../bio/std/hts/bam/reference.d -[164/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_reconstruct.d.o -c ../bio/std/hts/bam/md/reconstruct.d -[165/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_reader.d.o -c ../bio/std/hts/bam/reader.d -[166/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_randomaccessmanager.d.o -c ../bio/std/hts/bam/randomaccessmanager.d -[167/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_iontorrent_flowindex.d.o -c ../bio/std/hts/iontorrent/flowindex.d -[168/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_validation_samheader.d.o -c ../bio/std/hts/bam/validation/samheader.d +[164/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_randomaccessmanager.d.o -c ../bio/std/hts/bam/randomaccessmanager.d +[165/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_md_reconstruct.d.o -c ../bio/std/hts/bam/md/reconstruct.d +[166/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_validation_samheader.d.o -c ../bio/std/hts/bam/validation/samheader.d +[167/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_reader.d.o -c ../bio/std/hts/bam/reader.d +[168/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_iontorrent_flowindex.d.o -c ../bio/std/hts/iontorrent/flowindex.d [169/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_read.d.o -c ../bio/std/hts/bam/read.d [170/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_writer.d.o -c ../bio/std/hts/bam/writer.d -[171/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_multireader.d.o -c ../bio/std/hts/bam/multireader.d -[172/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_iontorrent_flowcall.d.o -c ../bio/std/hts/iontorrent/flowcall.d -[173/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_tagvalue.d.o -c ../bio/std/hts/bam/tagvalue.d -[174/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_snpcallers_maq.d.o -c ../bio/std/hts/snpcallers/maq.d +[171/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_tagvalue.d.o -c ../bio/std/hts/bam/tagvalue.d +[172/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_multireader.d.o -c ../bio/std/hts/bam/multireader.d +[173/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_validation_alignment.d.o -c ../bio/std/hts/bam/validation/alignment.d +[174/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_iontorrent_flowcall.d.o -c ../bio/std/hts/iontorrent/flowcall.d +[175/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_array.d.o -c ../bio/std/hts/utils/array.d +[176/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_reader.d.o -c ../bio/std/hts/sam/reader.d +[177/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_snpcallers_maq.d.o -c ../bio/std/hts/snpcallers/maq.d ../bio/core/tinymap.d(61): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(76): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. ../bio/core/tinymap.d(101): Deprecation: opIn_r is deprecated. Use opBinaryRight(string op)(...) if (op == "in") instead. -[175/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_reader.d.o -c ../bio/std/hts/sam/reader.d -[176/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_array.d.o -c ../bio/std/hts/utils/array.d -[177/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_bam_validation_alignment.d.o -c ../bio/std/hts/bam/validation/alignment.d [178/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_snpcallers_simple.d.o -c ../bio/std/hts/snpcallers/simple.d [179/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_graph.d.o -c ../bio/std/hts/utils/graph.d [180/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_maf_block.d.o -c ../bio/std/maf/block.d [181/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_utils_value.d.o -c ../bio/std/hts/utils/value.d [182/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_maf_reader.d.o -c ../bio/std/maf/reader.d [183/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_constants.d.o -c ../bio/std/sff/constants.d -[184/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_maf_parser.d.o -c ../bio/std/maf/parser.d -[185/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_index.d.o -c ../bio/std/sff/index.d -[186/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_read.d.o -c ../bio/std/sff/read.d +[184/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_index.d.o -c ../bio/std/sff/index.d +[185/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_read.d.o -c ../bio/std/sff/read.d +[186/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_maf_parser.d.o -c ../bio/std/maf/parser.d [187/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_range_splitter.d.o -c ../bio/std/range/splitter.d [188/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_utils_roundup.d.o -c ../bio/std/sff/utils/roundup.d [189/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_writer.d.o -c ../bio/std/sff/writer.d [190/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_reader.d.o -c ../bio/std/sff/reader.d -[191/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/_build_libbiod-0.2.3+git20191120.b8eecef_obj-aarch64-linux-gnu_utmain.d.o -c /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/utmain.d -[192/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_readrange.d.o -c ../bio/std/sff/readrange.d -[193/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_utils_recordparser.d.o -c ../bio/std/hts/sam/utils/recordparser.d +[191/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_sff_readrange.d.o -c ../bio/std/sff/readrange.d +[192/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/_build_libbiod-0.2.3+git20191120.b8eecef_obj-aarch64-linux-gnu_utmain.d.o -c /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/utmain.d +[193/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_header.d.o -c ../bio/std/hts/sam/header.d +[194/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_utils_recordparser.d.o -c ../bio/std/hts/sam/utils/recordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable @@ -988,7 +1056,6 @@ sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable -[194/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_header.d.o -c ../bio/std/hts/sam/header.d [195/199] ldc2 -I=biod_test.p -I=. -I=.. -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -unittest -of=biod_test.p/bio_std_hts_sam_utils_fastrecordparser.d.o -c ../bio/std/hts/sam/utils/fastrecordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable @@ -1054,29 +1121,29 @@ 1/1 biod_tests FAIL 0.02s (killed by signal 11 SIGSEGV) --- command --- -11:59:35 /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test --DRT-gcopt=gc:precise disable:1 cleanup:none +18:31:52 /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test --DRT-gcopt=gc:precise disable:1 cleanup:none --- stderr --- -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ19unittestSegvHandlerUNbiPSQCk3sys5posix6signal9siginfo_tPvZv+0x24)[0xffffa9d1f7d0] -linux-vdso.so.1(__kernel_rt_sigreturn+0x0)[0xffffaa23e688] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9bb38)[0xaaaae4a02b38] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b99c)[0xaaaae4a0299c] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b708)[0xaaaae4a02708] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9a020)[0xaaaae4a01020] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2fc4)[0xaaaae4a09fc4] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2f84)[0xaaaae4a09f84] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xaa89c)[0xaaaae4a1189c] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xbf19c)[0xaaaae4a2619c] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ14__foreachbody2MFPS6object10ModuleInfoZi+0x38)[0xffffa9d1f824] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZ14__foreachbody2MFKSQCz19sections_elf_shared3DSOZi+0x40)[0xffffa9d490d0] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt19sections_elf_shared3DSO7opApplyFMDFKSQBqQBqQyZiZi+0x48)[0xffffa9d4a44c] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZi+0x1c)[0xffffa9d49068] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D6object10ModuleInfo7opApplyFMDFPSQBhQBdZiZi+0x1c)[0xffffa9d36374] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(runModuleUnitTests+0xd8)[0xffffa9d1f6ac] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt6dmain212_d_run_main2UAAamPUQgZiZ6runAllMFZv+0x1c)[0xffffa9d3fe20] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main2+0x17c)[0xffffa9d3fc4c] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main+0x94)[0xffffa9d3fab4] -/lib/aarch64-linux-gnu/libc.so.6(__libc_start_main+0xe8)[0xffffa9a1c218] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x97f24)[0xaaaae49fef24] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ19unittestSegvHandlerUNbiPSQCk3sys5posix6signal9siginfo_tPvZv+0x24)[0xffff98efa7d0] +linux-vdso.so.1(__kernel_rt_sigreturn+0x0)[0xffff99419688] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9bb38)[0xaaaac612eb38] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b99c)[0xaaaac612e99c] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b708)[0xaaaac612e708] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9a020)[0xaaaac612d020] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2fc4)[0xaaaac6135fc4] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2f84)[0xaaaac6135f84] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xaa89c)[0xaaaac613d89c] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xbf19c)[0xaaaac615219c] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ14__foreachbody2MFPS6object10ModuleInfoZi+0x38)[0xffff98efa824] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZ14__foreachbody2MFKSQCz19sections_elf_shared3DSOZi+0x40)[0xffff98f240d0] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt19sections_elf_shared3DSO7opApplyFMDFKSQBqQBqQyZiZi+0x48)[0xffff98f2544c] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZi+0x1c)[0xffff98f24068] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D6object10ModuleInfo7opApplyFMDFPSQBhQBdZiZi+0x1c)[0xffff98f11374] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(runModuleUnitTests+0xd8)[0xffff98efa6ac] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt6dmain212_d_run_main2UAAamPUQgZiZ6runAllMFZv+0x1c)[0xffff98f1ae20] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main2+0x17c)[0xffff98f1ac4c] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main+0x94)[0xffff98f1aab4] +/lib/aarch64-linux-gnu/libc.so.6(__libc_start_main+0xe8)[0xffff98bf7218] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x97f24)[0xaaaac612af24] ------- @@ -1097,36 +1164,36 @@ ninja: build stopped: subcommand failed. cd obj-aarch64-linux-gnu && tail -v -n \+0 meson-logs/testlog.txt ==> meson-logs/testlog.txt <== -Log of Meson test suite run on 2021-08-14T23:59:35.184638 +Log of Meson test suite run on 2022-09-18T08:31:52.864299 -Inherited environment: DEB_HOST_GNU_SYSTEM='linux-gnu' SUDO_GID='117' DFLAGS='-O -g -release -wi' DEB_BUILD_ARCH_BITS='64' DEB_TARGET_GNU_CPU='aarch64' MAIL='/var/mail/root' DEB_HOST_ARCH_OS='linux' LANGUAGE='en_US:en' USER='pbuilder1' CXXFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' DEB_BUILD_GNU_TYPE='aarch64-linux-gnu' BUILDUSERNAME='pbuilder1' DEB_TARGET_MULTIARCH='aarch64-linux-gnu' OBJCFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' DH_INTERNAL_OPTIONS='-O--buildsystem=meson' DEB_BUILD_ARCH_CPU='arm64' SHLVL='2' DEB_HOST_ARCH_LIBC='gnu' DEB_HOST_ARCH_ABI='base' OLDPWD='/' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' HOME='/nonexistent/first-build' DEB_BUILD_ARCH_ENDIAN='little' LDFLAGS='-Wl,-z,relro' DEB_TARGET_ARCH_BITS='64' DEB_BUILD_GNU_SYSTEM='linux-gnu' MAKEFLAGS='w' PBUILDER_OPERATION='build' DEB_BUILD_ARCH_OS='linux' DEB_TARGET_GNU_TYPE='aarch64-linux-gnu' SUDO_UID='110' PBUILDER_PKGDATADIR='/usr/share/pbuilder' DEB_TARGET_ARCH_CPU='arm64' DC='ldc2' LOGNAME='pbuilder1' DEB_BUILD_ARCH_LIBC='gnu' DEB_BUILD_ARCH_ABI='base' PBUILDER_SYSCONFDIR='/etc' _='/usr/bin/unshare' DEB_HOST_ARCH='arm64' DEB_TARGET_ARCH_ENDIAN='little' USERNAME='root' TERM='unknown' DH_INTERNAL_OVERRIDE='dh_auto_test' DEB_HOST_GNU_CPU='aarch64' DEB_TARGET_GNU_SYSTEM='linux-gnu' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' MESON_TESTTHREADS='8' DEB_TARGET_ARCH_OS='linux' CFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' MAKELEVEL='2' DEB_HOST_MULTIARCH='aarch64-linux-gnu' SOURCE_DATE_EPOCH='1579034133' FCFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' OBJCXXFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' LANG='C' LD_PRELOAD='' DEB_TARGET_ARCH_LIBC='gnu' DEB_TARGET_ARCH_ABI='base' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/pbuilderrc_9Id2 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/b1 --logfile b1/build.log libbiod_0.2.3+git20191120.b8eecef-2.dsc' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' DEBIAN_FRONTEND='noninteractive' DH_INTERNAL_BUILDFLAGS='1' SHELL='/bin/bash' DEB_HOST_ARCH_BITS='64' DEB_BUILD_ARCH='arm64' SUDO_USER='jenkins' DEB_BUILD_GNU_CPU='aarch64' DEB_HOST_GNU_TYPE='aarch64-linux-gnu' LC_ALL='C.UTF-8' PWD='/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu' DEB_HOST_ARCH_CPU='arm64' DEB_RULES_REQUIRES_ROOT='binary-targets' FFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' DEB_BUILD_MULTIARCH='aarch64-linux-gnu' MFLAGS='-w' TZ='/usr/share/zoneinfo/Etc/GMT+12' GCJFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' PBCURRENTCOMMANDLINEOPERATION='build' DEB_HOST_ARCH_ENDIAN='little' DEB_TARGET_ARCH='arm64' +Inherited environment: SHELL='/bin/bash' DEB_HOST_ARCH_LIBC='gnu' SUDO_GID='117' DEB_TARGET_GNU_SYSTEM='linux-gnu' GCJFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' DEB_HOST_MULTIARCH='aarch64-linux-gnu' LANGUAGE='nl_BE:nl' DEB_TARGET_ARCH_CPU='arm64' BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' DH_INTERNAL_OVERRIDE='dh_auto_test' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/pbuilderrc_mk5p --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mQg1DmYECw/b2 --logfile b2/build.log --extrapackages usrmerge libbiod_0.2.3+git20191120.b8eecef-2.dsc' SUDO_USER='jenkins' DEB_TARGET_ARCH_BITS='64' FFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' PBUILDER_SYSCONFDIR='/etc' PWD='/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu' DEB_BUILD_MULTIARCH='aarch64-linux-gnu' SOURCE_DATE_EPOCH='1579034133' LOGNAME='pbuilder2' DEB_HOST_GNU_SYSTEM='linux-gnu' DEB_RULES_REQUIRES_ROOT='binary-targets' DEB_BUILD_ARCH_BITS='64' CXXFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' DEB_BUILD_ARCH_OS='linux' _='/usr/bin/meson' TZ='/usr/share/zoneinfo/Etc/GMT-14' BUILDUSERNAME='pbuilder2' LD_PRELOAD='' LDFLAGS='-Wl,-z,relro' HOME='/nonexistent/second-build' USERNAME='root' LANG='C' DEB_HOST_ARCH_ABI='base' DEB_TARGET_ARCH_LIBC='gnu' DEB_TARGET_GNU_TYPE='aarch64-linux-gnu' DEB_TARGET_ARCH_ABI='base' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' DEB_TARGET_ARCH='arm64' DC='ldc2' DEB_BUILD_ARCH='arm64' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' DEB_TARGET_ARCH_OS='linux' MFLAGS='-w' PBUILDER_OPERATION='build' FCFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong' MAKEFLAGS='w' MESON_TESTTHREADS='8' TERM='unknown' DEB_TARGET_MULTIARCH='aarch64-linux-gnu' DEB_BUILD_ARCH_CPU='arm64' DEB_BUILD_ARCH_LIBC='gnu' OBJCFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' USER='pbuilder2' DEB_HOST_ARCH_BITS='64' DEB_BUILD_GNU_TYPE='aarch64-linux-gnu' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' SHLVL='3' MAKELEVEL='2' DEB_BUILD_GNU_SYSTEM='linux-gnu' DH_INTERNAL_OPTIONS='-O--buildsystem=meson' DEB_TARGET_GNU_CPU='aarch64' DEB_TARGET_ARCH_ENDIAN='little' DEB_HOST_ARCH='arm64' DEB_HOST_ARCH_ENDIAN='little' DEB_HOST_GNU_TYPE='aarch64-linux-gnu' LC_ALL='C.UTF-8' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' DEB_BUILD_ARCH_ENDIAN='little' DEB_HOST_ARCH_CPU='arm64' CFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' SUDO_UID='110' OBJCXXFLAGS='-g -O2 -fdebug-prefix-map=/build/libbiod-0.2.3+git20191120.b8eecef=. -fstack-protector-strong -Wformat -Werror=format-security' MAIL='/var/mail/root' DFLAGS='-O -g -release -wi' DEB_HOST_GNU_CPU='aarch64' DEB_HOST_ARCH_OS='linux' DEB_BUILD_GNU_CPU='aarch64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_ARCH_ABI='base' DH_INTERNAL_BUILDFLAGS='1' OLDPWD='/' 1/1 biod_tests FAIL 0.02s (killed by signal 11 SIGSEGV) --- command --- -11:59:35 /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test --DRT-gcopt=gc:precise disable:1 cleanup:none +18:31:52 /build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test --DRT-gcopt=gc:precise disable:1 cleanup:none --- stderr --- -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ19unittestSegvHandlerUNbiPSQCk3sys5posix6signal9siginfo_tPvZv+0x24)[0xffffa9d1f7d0] -linux-vdso.so.1(__kernel_rt_sigreturn+0x0)[0xffffaa23e688] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9bb38)[0xaaaae4a02b38] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b99c)[0xaaaae4a0299c] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b708)[0xaaaae4a02708] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9a020)[0xaaaae4a01020] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2fc4)[0xaaaae4a09fc4] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2f84)[0xaaaae4a09f84] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xaa89c)[0xaaaae4a1189c] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xbf19c)[0xaaaae4a2619c] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ14__foreachbody2MFPS6object10ModuleInfoZi+0x38)[0xffffa9d1f824] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZ14__foreachbody2MFKSQCz19sections_elf_shared3DSOZi+0x40)[0xffffa9d490d0] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt19sections_elf_shared3DSO7opApplyFMDFKSQBqQBqQyZiZi+0x48)[0xffffa9d4a44c] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZi+0x1c)[0xffffa9d49068] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D6object10ModuleInfo7opApplyFMDFPSQBhQBdZiZi+0x1c)[0xffffa9d36374] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(runModuleUnitTests+0xd8)[0xffffa9d1f6ac] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt6dmain212_d_run_main2UAAamPUQgZiZ6runAllMFZv+0x1c)[0xffffa9d3fe20] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main2+0x17c)[0xffffa9d3fc4c] -/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main+0x94)[0xffffa9d3fab4] -/lib/aarch64-linux-gnu/libc.so.6(__libc_start_main+0xe8)[0xffffa9a1c218] -/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x97f24)[0xaaaae49fef24] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ19unittestSegvHandlerUNbiPSQCk3sys5posix6signal9siginfo_tPvZv+0x24)[0xffff98efa7d0] +linux-vdso.so.1(__kernel_rt_sigreturn+0x0)[0xffff99419688] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9bb38)[0xaaaac612eb38] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b99c)[0xaaaac612e99c] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9b708)[0xaaaac612e708] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x9a020)[0xaaaac612d020] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2fc4)[0xaaaac6135fc4] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xa2f84)[0xaaaac6135f84] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xaa89c)[0xaaaac613d89c] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0xbf19c)[0xaaaac615219c] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D4core7runtime18runModuleUnitTestsUZ14__foreachbody2MFPS6object10ModuleInfoZi+0x38)[0xffff98efa824] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZ14__foreachbody2MFKSQCz19sections_elf_shared3DSOZi+0x40)[0xffff98f240d0] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt19sections_elf_shared3DSO7opApplyFMDFKSQBqQBqQyZiZi+0x48)[0xffff98f2544c] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt5minfo17moduleinfos_applyFMDFyPS6object10ModuleInfoZiZi+0x1c)[0xffff98f24068] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D6object10ModuleInfo7opApplyFMDFPSQBhQBdZiZi+0x1c)[0xffff98f11374] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(runModuleUnitTests+0xd8)[0xffff98efa6ac] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_D2rt6dmain212_d_run_main2UAAamPUQgZiZ6runAllMFZv+0x1c)[0xffff98f1ae20] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main2+0x17c)[0xffff98f1ac4c] +/usr/lib/aarch64-linux-gnu/libdruntime-ldc-shared.so.94(_d_run_main+0x94)[0xffff98f1aab4] +/lib/aarch64-linux-gnu/libc.so.6(__libc_start_main+0xe8)[0xffff98bf7218] +/build/libbiod-0.2.3+git20191120.b8eecef/obj-aarch64-linux-gnu/biod_test(+0x97f24)[0xaaaac612af24] ------- @@ -1280,17 +1347,17 @@ dh_strip -O--buildsystem=meson dh_makeshlibs -O--buildsystem=meson dh_shlibdeps -O--buildsystem=meson -dpkg-shlibdeps: warning: symbol _D3std11parallelism__T4TaskS_D3bioQBg12experimental3hts11bgzf_writer16bgzfCompressFuncFAhiQdDFQhQjZvZSQDw8typecons__T5TupleTQBlTQBpTDFQBvQByZvZQBaTQCiTiTQCoTQzZQFi6__initZ used by debian/libbiod0/usr/lib/aarch64-linux-gnu/libbiod.so.0.2.3 found in none of the libraries dpkg-shlibdeps: warning: symbol _D4core8internal5array8equality__T8__equalsTxPS3std11parallelism__T4TaskS_D3bioQBg12experimental3hts11bgzf_writer16bgzfCompressFuncFAhiQdDFQhQjZvZSQDw8typecons__T5TupleTQBlTQBpTDFQBvQByZvZQBaTQCiTiTQCoTQzZQFiTxQGjZQGyFNaNbNiNfMAxQHcMQgZb used by debian/libbiod0/usr/lib/aarch64-linux-gnu/libbiod.so.0.2.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol _D3std11parallelism__T4TaskS_D3bioQBg12experimental3hts11bgzf_writer16bgzfCompressFuncFAhiQdDFQhQjZvZSQDw8typecons__T5TupleTQBlTQBpTDFQBvQByZvZQBaTQCiTiTQCoTQzZQFi6__initZ used by debian/libbiod0/usr/lib/aarch64-linux-gnu/libbiod.so.0.2.3 found in none of the libraries dpkg-shlibdeps: warning: symbol _D3std11parallelism__T4TaskS_D3bioQBg12experimental3hts11bgzf_writer16bgzfCompressFuncFAhiQdDFQhQjZvZSQDw8typecons__T5TupleTQBlTQBpTDFQBvQByZvZQBaTQCiTiTQCoTQzZQFi10yieldForceMFNcNdNeZQDf used by debian/libbiod0/usr/lib/aarch64-linux-gnu/libbiod.so.0.2.3 found in none of the libraries dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dpkg-gencontrol: warning: Depends field of package libbiod-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson -dpkg-deb: building package 'libbiod0-dbgsym' in '../libbiod0-dbgsym_0.2.3+git20191120.b8eecef-2_arm64.deb'. dpkg-deb: building package 'libbiod0' in '../libbiod0_0.2.3+git20191120.b8eecef-2_arm64.deb'. dpkg-deb: building package 'libbiod-dev' in '../libbiod-dev_0.2.3+git20191120.b8eecef-2_arm64.deb'. +dpkg-deb: building package 'libbiod0-dbgsym' in '../libbiod0-dbgsym_0.2.3+git20191120.b8eecef-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libbiod_0.2.3+git20191120.b8eecef-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1298,12 +1365,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/27164/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/27164/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23652 and its subdirectories -I: Current time: Sun Aug 15 00:00:08 -12 2021 -I: pbuilder-time-stamp: 1629028808 +I: removing directory /srv/workspace/pbuilder/27164 and its subdirectories +I: Current time: Sun Sep 18 08:32:35 +14 2022 +I: pbuilder-time-stamp: 1663439555