Diff of the two buildlogs:

--
--- b1/build.log	2023-08-02 15:28:06.401165221 +0000
+++ b2/build.log	2023-08-02 15:34:05.593182024 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Wed Aug  2 03:18:47 -12 2023
-I: pbuilder-time-stamp: 1690989527
+I: Current time: Wed Sep  4 11:51:11 +14 2024
+I: pbuilder-time-stamp: 1725400271
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
 I: copying local configuration
@@ -17,8 +17,8 @@
 I: copying [./tnseq-transit_3.2.1-1.debian.tar.xz]
 I: Extracting source
 gpgv: unknown type of key resource 'trustedkeys.kbx'
-gpgv: keyblock resource '/tmp/dpkg-verify-sig.l45GOS0i/trustedkeys.kbx': General error
-gpgv: Signature made Thu Dec 24 06:30:31 2020 -12
+gpgv: keyblock resource '/tmp/dpkg-verify-sig.GdYiCDwF/trustedkeys.kbx': General error
+gpgv: Signature made Fri Dec 25 08:30:31 2020 +14
 gpgv:                using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
 gpgv:                issuer "npatra974@gmail.com"
 gpgv: Can't check signature: No public key
@@ -30,135 +30,166 @@
 dpkg-source: info: applying skip_test_requiring_non_existing_input_data.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/794524/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/2123324/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos5-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Sep  4 11:51 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/2123324/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/2123324/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 '
-  DISTRIBUTION='bullseye'
-  HOME='/root'
-  HOST_ARCH='amd64'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.1.4(1)-release'
+  BUILDDIR=/build
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 '
+  DIRSTACK=()
+  DISTRIBUTION=bullseye
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='89768a17d39e4a9d9fe389b5b251ad3d'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='794524'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=18e02b8e480448658bdbf632d19db1c5
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=2123324
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/pbuilderrc_6DJk --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/b1 --logfile b1/build.log tnseq-transit_3.2.1-1.dsc'
-  SUDO_GID='110'
-  SUDO_UID='105'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://78.137.99.97:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/pbuilderrc_jQWu --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.r2rmUt7B/b2 --logfile b2/build.log tnseq-transit_3.2.1-1.dsc'
+  SUDO_GID=110
+  SUDO_UID=105
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://85.184.249.68:3128
 I: uname -a
-  Linux ionos1-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-2 (2023-07-27) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-2 (2023-07-27) x86_64 GNU/Linux
 I: ls -l /bin
   total 5476
-  -rwxr-xr-x 1 root root 1234376 Mar 27  2022 bash
-  -rwxr-xr-x 3 root root   38984 Jul 20  2020 bunzip2
-  -rwxr-xr-x 3 root root   38984 Jul 20  2020 bzcat
-  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzcmp -> bzdiff
-  -rwxr-xr-x 1 root root    2225 Jul 20  2020 bzdiff
-  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzegrep -> bzgrep
-  -rwxr-xr-x 1 root root    4877 Sep  4  2019 bzexe
-  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzfgrep -> bzgrep
-  -rwxr-xr-x 1 root root    3775 Jul 20  2020 bzgrep
-  -rwxr-xr-x 3 root root   38984 Jul 20  2020 bzip2
-  -rwxr-xr-x 1 root root   18424 Jul 20  2020 bzip2recover
-  lrwxrwxrwx 1 root root       6 Jul 20  2020 bzless -> bzmore
-  -rwxr-xr-x 1 root root    1297 Jul 20  2020 bzmore
-  -rwxr-xr-x 1 root root   43936 Sep 23  2020 cat
-  -rwxr-xr-x 1 root root   72672 Sep 23  2020 chgrp
-  -rwxr-xr-x 1 root root   64448 Sep 23  2020 chmod
-  -rwxr-xr-x 1 root root   72672 Sep 23  2020 chown
-  -rwxr-xr-x 1 root root  151168 Sep 23  2020 cp
-  -rwxr-xr-x 1 root root  125560 Dec 10  2020 dash
-  -rwxr-xr-x 1 root root  113664 Sep 23  2020 date
-  -rwxr-xr-x 1 root root   80968 Sep 23  2020 dd
-  -rwxr-xr-x 1 root root   93936 Sep 23  2020 df
-  -rwxr-xr-x 1 root root  147176 Sep 23  2020 dir
-  -rwxr-xr-x 1 root root   84440 Jan 20  2022 dmesg
-  lrwxrwxrwx 1 root root       8 Nov  6  2019 dnsdomainname -> hostname
-  lrwxrwxrwx 1 root root       8 Nov  6  2019 domainname -> hostname
-  -rwxr-xr-x 1 root root   39712 Sep 23  2020 echo
-  -rwxr-xr-x 1 root root      28 Jan 24  2023 egrep
-  -rwxr-xr-x 1 root root   39680 Sep 23  2020 false
-  -rwxr-xr-x 1 root root      28 Jan 24  2023 fgrep
-  -rwxr-xr-x 1 root root   69032 Jan 20  2022 findmnt
-  -rwsr-xr-x 1 root root   34896 Feb 26  2021 fusermount
-  -rwxr-xr-x 1 root root  203072 Jan 24  2023 grep
-  -rwxr-xr-x 2 root root    2346 Apr  9  2022 gunzip
-  -rwxr-xr-x 1 root root    6447 Apr  9  2022 gzexe
-  -rwxr-xr-x 1 root root   98048 Apr  9  2022 gzip
-  -rwxr-xr-x 1 root root   22600 Nov  6  2019 hostname
-  -rwxr-xr-x 1 root root   72840 Sep 23  2020 ln
-  -rwxr-xr-x 1 root root   56952 Feb  7  2020 login
-  -rwxr-xr-x 1 root root  147176 Sep 23  2020 ls
-  -rwxr-xr-x 1 root root  149736 Jan 20  2022 lsblk
-  -rwxr-xr-x 1 root root   85184 Sep 23  2020 mkdir
-  -rwxr-xr-x 1 root root   76896 Sep 23  2020 mknod
-  -rwxr-xr-x 1 root root   48064 Sep 23  2020 mktemp
-  -rwxr-xr-x 1 root root   59632 Jan 20  2022 more
-  -rwsr-xr-x 1 root root   55528 Jan 20  2022 mount
-  -rwxr-xr-x 1 root root   18664 Jan 20  2022 mountpoint
-  -rwxr-xr-x 1 root root  147080 Sep 23  2020 mv
-  lrwxrwxrwx 1 root root       8 Nov  6  2019 nisdomainname -> hostname
-  lrwxrwxrwx 1 root root      14 Dec 16  2021 pidof -> /sbin/killall5
-  -rwxr-xr-x 1 root root   43872 Sep 23  2020 pwd
-  lrwxrwxrwx 1 root root       4 Mar 27  2022 rbash -> bash
-  -rwxr-xr-x 1 root root   52032 Sep 23  2020 readlink
-  -rwxr-xr-x 1 root root   72704 Sep 23  2020 rm
-  -rwxr-xr-x 1 root root   52032 Sep 23  2020 rmdir
-  -rwxr-xr-x 1 root root   27472 Sep 27  2020 run-parts
-  -rwxr-xr-x 1 root root  122224 Dec 22  2018 sed
-  lrwxrwxrwx 1 root root       4 Jul  6 21:24 sh -> dash
-  -rwxr-xr-x 1 root root   43808 Sep 23  2020 sleep
-  -rwxr-xr-x 1 root root   84928 Sep 23  2020 stty
-  -rwsr-xr-x 1 root root   71912 Jan 20  2022 su
-  -rwxr-xr-x 1 root root   39744 Sep 23  2020 sync
-  -rwxr-xr-x 1 root root  531928 Feb 16  2021 tar
-  -rwxr-xr-x 1 root root   14456 Sep 27  2020 tempfile
-  -rwxr-xr-x 1 root root  101408 Sep 23  2020 touch
-  -rwxr-xr-x 1 root root   39680 Sep 23  2020 true
-  -rwxr-xr-x 1 root root   14328 Feb 26  2021 ulockmgr_server
-  -rwsr-xr-x 1 root root   35040 Jan 20  2022 umount
-  -rwxr-xr-x 1 root root   39744 Sep 23  2020 uname
-  -rwxr-xr-x 2 root root    2346 Apr  9  2022 uncompress
-  -rwxr-xr-x 1 root root  147176 Sep 23  2020 vdir
-  -rwxr-xr-x 1 root root   63744 Jan 20  2022 wdctl
-  lrwxrwxrwx 1 root root       8 Nov  6  2019 ypdomainname -> hostname
-  -rwxr-xr-x 1 root root    1984 Apr  9  2022 zcat
-  -rwxr-xr-x 1 root root    1678 Apr  9  2022 zcmp
-  -rwxr-xr-x 1 root root    5898 Apr  9  2022 zdiff
-  -rwxr-xr-x 1 root root      29 Apr  9  2022 zegrep
-  -rwxr-xr-x 1 root root      29 Apr  9  2022 zfgrep
-  -rwxr-xr-x 1 root root    2081 Apr  9  2022 zforce
-  -rwxr-xr-x 1 root root    8049 Apr  9  2022 zgrep
-  -rwxr-xr-x 1 root root    2206 Apr  9  2022 zless
-  -rwxr-xr-x 1 root root    1842 Apr  9  2022 zmore
-  -rwxr-xr-x 1 root root    4577 Apr  9  2022 znew
-I: user script /srv/workspace/pbuilder/794524/tmp/hooks/D02_print_environment finished
+  -rwxr-xr-x 1 root root 1234376 Mar 28  2022 bash
+  -rwxr-xr-x 3 root root   38984 Jul 21  2020 bunzip2
+  -rwxr-xr-x 3 root root   38984 Jul 21  2020 bzcat
+  lrwxrwxrwx 1 root root       6 Jul 21  2020 bzcmp -> bzdiff
+  -rwxr-xr-x 1 root root    2225 Jul 21  2020 bzdiff
+  lrwxrwxrwx 1 root root       6 Jul 21  2020 bzegrep -> bzgrep
+  -rwxr-xr-x 1 root root    4877 Sep  5  2019 bzexe
+  lrwxrwxrwx 1 root root       6 Jul 21  2020 bzfgrep -> bzgrep
+  -rwxr-xr-x 1 root root    3775 Jul 21  2020 bzgrep
+  -rwxr-xr-x 3 root root   38984 Jul 21  2020 bzip2
+  -rwxr-xr-x 1 root root   18424 Jul 21  2020 bzip2recover
+  lrwxrwxrwx 1 root root       6 Jul 21  2020 bzless -> bzmore
+  -rwxr-xr-x 1 root root    1297 Jul 21  2020 bzmore
+  -rwxr-xr-x 1 root root   43936 Sep 24  2020 cat
+  -rwxr-xr-x 1 root root   72672 Sep 24  2020 chgrp
+  -rwxr-xr-x 1 root root   64448 Sep 24  2020 chmod
+  -rwxr-xr-x 1 root root   72672 Sep 24  2020 chown
+  -rwxr-xr-x 1 root root  151168 Sep 24  2020 cp
+  -rwxr-xr-x 1 root root  125560 Dec 11  2020 dash
+  -rwxr-xr-x 1 root root  113664 Sep 24  2020 date
+  -rwxr-xr-x 1 root root   80968 Sep 24  2020 dd
+  -rwxr-xr-x 1 root root   93936 Sep 24  2020 df
+  -rwxr-xr-x 1 root root  147176 Sep 24  2020 dir
+  -rwxr-xr-x 1 root root   84440 Jan 21  2022 dmesg
+  lrwxrwxrwx 1 root root       8 Nov  8  2019 dnsdomainname -> hostname
+  lrwxrwxrwx 1 root root       8 Nov  8  2019 domainname -> hostname
+  -rwxr-xr-x 1 root root   39712 Sep 24  2020 echo
+  -rwxr-xr-x 1 root root      28 Jan 25  2023 egrep
+  -rwxr-xr-x 1 root root   39680 Sep 24  2020 false
+  -rwxr-xr-x 1 root root      28 Jan 25  2023 fgrep
+  -rwxr-xr-x 1 root root   69032 Jan 21  2022 findmnt
+  -rwsr-xr-x 1 root root   34896 Feb 27  2021 fusermount
+  -rwxr-xr-x 1 root root  203072 Jan 25  2023 grep
+  -rwxr-xr-x 2 root root    2346 Apr 10  2022 gunzip
+  -rwxr-xr-x 1 root root    6447 Apr 10  2022 gzexe
+  -rwxr-xr-x 1 root root   98048 Apr 10  2022 gzip
+  -rwxr-xr-x 1 root root   22600 Nov  8  2019 hostname
+  -rwxr-xr-x 1 root root   72840 Sep 24  2020 ln
+  -rwxr-xr-x 1 root root   56952 Feb  8  2020 login
+  -rwxr-xr-x 1 root root  147176 Sep 24  2020 ls
+  -rwxr-xr-x 1 root root  149736 Jan 21  2022 lsblk
+  -rwxr-xr-x 1 root root   85184 Sep 24  2020 mkdir
+  -rwxr-xr-x 1 root root   76896 Sep 24  2020 mknod
+  -rwxr-xr-x 1 root root   48064 Sep 24  2020 mktemp
+  -rwxr-xr-x 1 root root   59632 Jan 21  2022 more
+  -rwsr-xr-x 1 root root   55528 Jan 21  2022 mount
+  -rwxr-xr-x 1 root root   18664 Jan 21  2022 mountpoint
+  -rwxr-xr-x 1 root root  147080 Sep 24  2020 mv
+  lrwxrwxrwx 1 root root       8 Nov  8  2019 nisdomainname -> hostname
+  lrwxrwxrwx 1 root root      14 Dec 17  2021 pidof -> /sbin/killall5
+  -rwxr-xr-x 1 root root   43872 Sep 24  2020 pwd
+  lrwxrwxrwx 1 root root       4 Mar 28  2022 rbash -> bash
+  -rwxr-xr-x 1 root root   52032 Sep 24  2020 readlink
+  -rwxr-xr-x 1 root root   72704 Sep 24  2020 rm
+  -rwxr-xr-x 1 root root   52032 Sep 24  2020 rmdir
+  -rwxr-xr-x 1 root root   27472 Sep 28  2020 run-parts
+  -rwxr-xr-x 1 root root  122224 Dec 23  2018 sed
+  lrwxrwxrwx 1 root root       9 Sep  4 11:51 sh -> /bin/bash
+  -rwxr-xr-x 1 root root   43808 Sep 24  2020 sleep
+  -rwxr-xr-x 1 root root   84928 Sep 24  2020 stty
+  -rwsr-xr-x 1 root root   71912 Jan 21  2022 su
+  -rwxr-xr-x 1 root root   39744 Sep 24  2020 sync
+  -rwxr-xr-x 1 root root  531928 Feb 17  2021 tar
+  -rwxr-xr-x 1 root root   14456 Sep 28  2020 tempfile
+  -rwxr-xr-x 1 root root  101408 Sep 24  2020 touch
+  -rwxr-xr-x 1 root root   39680 Sep 24  2020 true
+  -rwxr-xr-x 1 root root   14328 Feb 27  2021 ulockmgr_server
+  -rwsr-xr-x 1 root root   35040 Jan 21  2022 umount
+  -rwxr-xr-x 1 root root   39744 Sep 24  2020 uname
+  -rwxr-xr-x 2 root root    2346 Apr 10  2022 uncompress
+  -rwxr-xr-x 1 root root  147176 Sep 24  2020 vdir
+  -rwxr-xr-x 1 root root   63744 Jan 21  2022 wdctl
+  lrwxrwxrwx 1 root root       8 Nov  8  2019 ypdomainname -> hostname
+  -rwxr-xr-x 1 root root    1984 Apr 10  2022 zcat
+  -rwxr-xr-x 1 root root    1678 Apr 10  2022 zcmp
+  -rwxr-xr-x 1 root root    5898 Apr 10  2022 zdiff
+  -rwxr-xr-x 1 root root      29 Apr 10  2022 zegrep
+  -rwxr-xr-x 1 root root      29 Apr 10  2022 zfgrep
+  -rwxr-xr-x 1 root root    2081 Apr 10  2022 zforce
+  -rwxr-xr-x 1 root root    8049 Apr 10  2022 zgrep
+  -rwxr-xr-x 1 root root    2206 Apr 10  2022 zless
+  -rwxr-xr-x 1 root root    1842 Apr 10  2022 zmore
+  -rwxr-xr-x 1 root root    4577 Apr 10  2022 znew
+I: user script /srv/workspace/pbuilder/2123324/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -317,7 +348,7 @@
 Get: 101 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB]
 Get: 102 http://deb.debian.org/debian bullseye/main amd64 python3-statsmodels-lib amd64 0.12.2-1 [1366 kB]
 Get: 103 http://deb.debian.org/debian bullseye/main amd64 python3-statsmodels all 0.12.2-1 [4455 kB]
-Fetched 73.7 MB in 1s (67.4 MB/s)
+Fetched 73.7 MB in 1s (80.0 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package bsdextrautils.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19707 files and directories currently installed.)
@@ -749,7 +780,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/tnseq-transit-3.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../tnseq-transit_3.2.1-1_source.changes
+I: user script /srv/workspace/pbuilder/2123324/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for bullseye
+I: user script /srv/workspace/pbuilder/2123324/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/tnseq-transit-3.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../tnseq-transit_3.2.1-1_source.changes
 dpkg-buildpackage: info: source package tnseq-transit
 dpkg-buildpackage: info: source version 3.2.1-1
 dpkg-buildpackage: info: source distribution unstable
@@ -1080,7 +1115,7 @@
 ResourceWarning: Enable tracemalloc to get the object allocation traceback
 [anova] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt
 [anova] Finished Anova analysis
-[anova] Time: 1.5s
+[anova] Time: 0.7s
 
 Removing output file...
 
@@ -1143,7 +1178,7 @@
 [resampling] Adding File: /build/tnseq-transit-3.2.1/tests/testoutput.txt
 [resampling] Finished resampling Method
 37
-34
+35
 Removing output file...
 
 
@@ -1350,23 +1385,23 @@
 ResourceWarning: Enable tracemalloc to get the object allocation traceback
 [tn_preprocess] mapping reads using BWA...(this takes a couple of minutes)
 [tn_preprocess] /usr/bin/bwa index /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna
-b'[bwa_index] Pack FASTA... 0.07 sec'
+b'[bwa_index] Pack FASTA... 0.05 sec'
 b'[bwa_index] Construct BWT for the packed sequence...'
-b'[bwa_index] 2.79 seconds elapse.'
-b'[bwa_index] Update BWT... 0.05 sec'
+b'[bwa_index] 2.15 seconds elapse.'
+b'[bwa_index] Update BWT... 0.04 sec'
 b'[bwa_index] Pack forward-only FASTA... 0.04 sec'
-b'[bwa_index] Construct SA from BWT and Occ... 1.61 sec'
+b'[bwa_index] Construct SA from BWT and Occ... 0.88 sec'
 b'[main] Version: 0.7.17-r1188'
 b'[main] CMD: /usr/bin/bwa index /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna'
-b'[main] Real time: 5.259 sec; CPU: 4.577 sec'
+b'[main] Real time: 3.154 sec; CPU: 3.160 sec'
 b''
 [tn_preprocess] /usr/bin/bwa mem /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1 > /build/tnseq-transit-3.2.1/tests/test_tpp_temp.sam
 b'[M::bwa_idx_load_from_disk] read 0 ALT contigs'
 b'[M::process] read 2500 sequences (304052 bp)...'
-b'[M::mem_process_seqs] Processed 2500 reads in 0.352 CPU sec, 0.487 real sec'
+b'[M::mem_process_seqs] Processed 2500 reads in 0.216 CPU sec, 0.216 real sec'
 b'[main] Version: 0.7.17-r1188'
 b'[main] CMD: /usr/bin/bwa mem /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1'
-b'[main] Real time: 0.519 sec; CPU: 0.382 sec'
+b'[main] Real time: 0.232 sec; CPU: 0.239 sec'
 b''
 [tn_preprocess] tabulating template counts and statistics for reference genome /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna
 /build/tnseq-transit-3.2.1/tests/../src/pytpp/tpp_tools.py:378: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna' mode='r' encoding='UTF-8'>
@@ -1404,10 +1439,10 @@
 [tn_preprocess] /usr/bin/bwa mem /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1 > /build/tnseq-transit-3.2.1/tests/test_tpp_temp.sam
 b'[M::bwa_idx_load_from_disk] read 0 ALT contigs'
 b'[M::process] read 2500 sequences (304052 bp)...'
-b'[M::mem_process_seqs] Processed 2500 reads in 0.339 CPU sec, 0.352 real sec'
+b'[M::mem_process_seqs] Processed 2500 reads in 0.213 CPU sec, 0.214 real sec'
 b'[main] Version: 0.7.17-r1188'
 b'[main] CMD: /usr/bin/bwa mem /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna /build/tnseq-transit-3.2.1/tests/test_tpp_temp.trimmed1'
-b'[main] Real time: 0.374 sec; CPU: 0.367 sec'
+b'[main] Real time: 0.229 sec; CPU: 0.236 sec'
 b''
 [tn_preprocess] tabulating template counts and statistics for reference genome /build/tnseq-transit-3.2.1/tests/data/test-multicontig.fna
 [tn_preprocess] writing /build/tnseq-transit-3.2.1/tests/test_tpp_temp_a.wig
@@ -1420,7 +1455,7 @@
 test_tpp_protocol_mme1 (tests.test_tpp.TestTPP) ... skipped 'requires local data file'
 
 ----------------------------------------------------------------------
-Ran 39 tests in 436.952s
+Ran 39 tests in 258.504s
 
 OK (skipped=6)
 [resampling] 
@@ -1489,7 +1524,7 @@
 tests.test_tpp.TestTPP.test_tpp_multicontig_auto_replicon_ids
 ####################
 # title: Tn-Seq Pre-Processor
-# date: 08/02/2023 03:27:04
+# date: 09/04/2024 11:56:23
 # command: python python3.9 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py
 # transposon type: Himar1
 # protocol type: Sassetti
@@ -1567,7 +1602,7 @@
 tests.test_tpp.TestTPP.test_tpp_multicontig_empty_prefix
 ####################
 # title: Tn-Seq Pre-Processor
-# date: 08/02/2023 03:27:08
+# date: 09/04/2024 11:56:25
 # command: python python3.9 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py
 # transposon type: Himar1
 # protocol type: Sassetti
@@ -1842,12 +1877,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/2123324/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/2123324/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/794524 and its subdirectories
-I: Current time: Wed Aug  2 03:28:05 -12 2023
-I: pbuilder-time-stamp: 1690990085
+I: removing directory /srv/workspace/pbuilder/2123324 and its subdirectories
+I: Current time: Wed Sep  4 11:57:07 +14 2024
+I: pbuilder-time-stamp: 1725400627