Diff of the two buildlogs: -- --- b1/build.log 2024-01-07 09:07:49.332498803 +0000 +++ b2/build.log 2024-01-07 09:20:05.324528817 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jan 6 20:54:39 -12 2024 -I: pbuilder-time-stamp: 1704617679 +I: Current time: Sun Feb 9 05:30:56 +14 2025 +I: pbuilder-time-stamp: 1739028656 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: copying [./sra-sdk_2.10.9+dfsg-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.Irl66mG0/trustedkeys.kbx': General error +gpgv: keyblock resource '/tmp/dpkg-verify-sig.pPLB3Ef6/trustedkeys.kbx': General error gpgv: Signature made Fri Feb 5 01:40:03 2021 gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 gpgv: Can't check signature: No public key @@ -50,49 +50,80 @@ dpkg-source: info: applying skip_broken_loaders.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/305055/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1133667/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 8 15:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1133667/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1133667/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='003eaf20b53b4708a2fdcebd4d277aa8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='305055' - PS1='# ' - PS2='> ' + INVOCATION_ID=316e64218c264d17b6f2b9fb48657806 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1133667 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wOFVRfOU/pbuilderrc_osie --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wOFVRfOU/b1 --logfile b1/build.log sra-sdk_2.10.9+dfsg-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wOFVRfOU/pbuilderrc_ZMy3 --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wOFVRfOU/b2 --logfile b2/build.log sra-sdk_2.10.9+dfsg-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.5.0-0.deb12.4-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.5.10-1~bpo12+1 (2023-11-23) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash @@ -152,7 +183,7 @@ -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Dec 7 09:30 sh -> dash + lrwxrwxrwx 1 root root 9 Feb 8 15:31 sh -> /bin/bash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su @@ -178,7 +209,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/305055/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1133667/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -316,7 +347,7 @@ Get: 84 http://deb.debian.org/debian bullseye/main amd64 libvdb-sqlite2 amd64 2.10.9+dfsg-2 [1473 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libvdb-sqlite-dev amd64 2.10.9+dfsg-2 [1645 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libxml2-dev amd64 2.9.10+dfsg-6.7+deb11u4 [790 kB] -Fetched 52.9 MB in 28s (1891 kB/s) +Fetched 52.9 MB in 1s (67.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17743 files and directories currently installed.) @@ -603,8 +634,8 @@ Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Jan 7 08:55:45 UTC 2024. -Universal Time is now: Sun Jan 7 08:55:45 UTC 2024. +Local time is now: Sat Feb 8 15:31:48 UTC 2025. +Universal Time is now: Sat Feb 8 15:31:48 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1+nmu1) ... @@ -685,7 +716,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/sra-sdk-2.10.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sra-sdk_2.10.9+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1133667/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/1133667/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/sra-sdk-2.10.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sra-sdk_2.10.9+dfsg-2_source.changes dpkg-buildpackage: info: source package sra-sdk dpkg-buildpackage: info: source version 2.10.9+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -740,7 +775,7 @@ checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes -checking whether g++ accepts -static-libstdc++... no +checking whether g++ accepts -static-libstdc++... yes checking for QMake... no checking for fuse library... running echo -e '#include \n int main() { fuse_get_context(); }\n' | gcc -xc -D_FILE_OFFSET_BITS=64 -I/usr/include - -lfuse @@ -877,7 +912,7 @@ make[7]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/driver-tool/json' make[6]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/driver-tool/json' +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sratools.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 sratools.o sratools2.o imp_fasterq_dump.o imp_fastq_dump.o imp_prefetch.o imp_sam_dump.o imp_sra_pileup.o imp_srapath.o imp_vdb_dump.o cmdline.o config.o proc.o run-source.o uuid.o service.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lncbi-vdb -ljson -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sratools.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 sratools.o sratools2.o imp_fasterq_dump.o imp_fastq_dump.o imp_prefetch.o imp_sam_dump.o imp_sra_pileup.o imp_srapath.o imp_vdb_dump.o cmdline.o config.o proc.o run-source.o uuid.o service.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lncbi-vdb -ljson -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sratools.2.10.9 sratools.2 ln -s sratools.2 sratools make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/driver-tool' @@ -886,39 +921,39 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/util' gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o rcexplain.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/rcexplain.c -D__mod_name__=tools/util -D__file_name__=rcexplain -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/rcexplain.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 rcexplain.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/rcexplain.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 rcexplain.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s rcexplain.2.10.9 rcexplain.2 ln -s rcexplain.2 rcexplain gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kdbmeta.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/kdbmeta.c -D__mod_name__=tools/util -D__file_name__=kdbmeta -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kdbmeta.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kdbmeta.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kdbmeta.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kdbmeta.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s kdbmeta.2.10.9 kdbmeta.2 ln -s kdbmeta.2 kdbmeta gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o md5cp.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/md5cp.c -D__mod_name__=tools/util -D__file_name__=md5cp -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/md5cp.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 md5cp.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/md5cp.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 md5cp.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s md5cp.2.10.9 md5cp.2 ln -s md5cp.2 md5cp gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-lock.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/vdb-lock.c -D__mod_name__=tools/util -D__file_name__=vdb-lock -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-lock.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-lock.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-lock.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-lock.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-lock.2.10.9 vdb-lock.2 ln -s vdb-lock.2 vdb-lock gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-unlock.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/vdb-unlock.c -D__mod_name__=tools/util -D__file_name__=vdb-unlock -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-unlock.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-unlock.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-unlock.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-unlock.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-unlock.2.10.9 vdb-unlock.2 ln -s vdb-unlock.2 vdb-unlock gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o PrintOS.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix/PrintOS.c -D__mod_name__=tools/util -D__file_name__=PrintOS -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o test-sra.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/test-sra.c -D__mod_name__=tools/util -D__file_name__=test-sra -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/test-sra.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 PrintOS.o test-sra.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/test-sra.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 PrintOS.o test-sra.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s test-sra.2.10.9 test-sra.2 ln -s test-sra.2 test-sra gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-passwd.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/vdb-passwd.c -D__mod_name__=tools/util -D__file_name__=vdb-passwd -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o syspass.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix/syspass.c -D__mod_name__=tools/util -D__file_name__=syspass -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-passwd.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-passwd.o syspass.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-passwd.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-passwd.o syspass.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-passwd.2.10.9 vdb-passwd.2 ln -s vdb-passwd.2 vdb-passwd gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o make-read-filter.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/make-read-filter.c -D__mod_name__=tools/util -D__file_name__=make-read-filter -D__file_ext__=c @@ -940,7 +975,7 @@ 692 | static void test(void) | ^~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/make-read-filter.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 make-read-filter.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/make-read-filter.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 make-read-filter.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s make-read-filter.2.10.9 make-read-filter.2 ln -s make-read-filter.2 make-read-filter make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/util' @@ -950,7 +985,7 @@ g++ -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-cache/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-cache/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-cache -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o align-cache.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-cache/align-cache.cpp -D__mod_name__=tools/align-cache -D__file_name__=align-cache -D__file_ext__=cpp g++ -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-cache/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-cache/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-cache -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o helper.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-cache/helper.cpp -D__mod_name__=tools/align-cache -D__file_name__=helper -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/align-cache.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 align-cache.o helper.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -lload -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/align-cache.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 align-cache.o helper.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -lload -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s align-cache.2.10.9 align-cache.2 ln -s align-cache.2 align-cache make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/align-cache' @@ -974,13 +1009,13 @@ 919 | size_t total_expected, total_written; | ^~~~~~~~~~~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kar.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kar-path.o kar-args.o kar.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kar.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kar-path.o kar-args.o kar.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s kar.2.10.9 kar.2 ln -s kar.2 kar gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar+util.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar/kar+util.c -D__mod_name__=tools/kar -D__file_name__=kar+util -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar+meta.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar/kar+meta.c -D__mod_name__=tools/kar -D__file_name__=kar+meta -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kar+meta.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kar+util.o kar+meta.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kar+meta.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kar+util.o kar+meta.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s kar+meta.2.10.9 kar+meta.2 ln -s kar+meta.2 kar+meta gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar+args.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/kar/kar+args.c -D__mod_name__=tools/kar -D__file_name__=kar+args -D__file_ext__=c @@ -1000,7 +1035,7 @@ 607 | size_t total_expected, total_written; | ^~~~~~~~~~~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kar+.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kar-path.o kar+args.o kar+print.o kar+util.o kar+.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kar+.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kar-path.o kar+args.o kar+print.o kar+util.o kar+.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s kar+.2.10.9 kar+.2 ln -s kar+.2 kar+ make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/kar' @@ -1034,7 +1069,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-dump/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-dump/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb_info.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-dump/vdb_info.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb_info -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-dump/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-dump/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-dump/vdb-dump.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-dump-context.o vdb-dump-coldefs.o vdb-dump-tools.o vdb-dump-str.o vdb-dump-helper.o vdb-dump-filter.o vdb-dump-formats.o vdb-dump-redir.o vdb-dump-fastq.o vdb-dump-bin.o vdb-dump-interact.o vdb-dump-repo.o vdb-dump-print.o vdb_info.o vdb-dump.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-dump-context.o vdb-dump-coldefs.o vdb-dump-tools.o vdb-dump-str.o vdb-dump-helper.o vdb-dump-filter.o vdb-dump-formats.o vdb-dump-redir.o vdb-dump-fastq.o vdb-dump-bin.o vdb-dump-interact.o vdb-dump-repo.o vdb-dump-print.o vdb_info.o vdb-dump.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-dump.2.10.9 vdb-dump.2 ln -s vdb-dump.2 vdb-dump make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-dump' @@ -1046,22 +1081,22 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o core.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/core.c -D__mod_name__=tools/sra-dump -D__file_name__=core -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastq.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/fastq.c -D__mod_name__=tools/sra-dump -D__file_name__=fastq -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/fastq-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o fastq.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/fastq-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o fastq.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s fastq-dump.2.10.9 fastq-dump.2 ln -s fastq-dump.2 fastq-dump gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sff.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/sff.c -D__mod_name__=tools/sra-dump -D__file_name__=sff -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sff-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o sff.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sff-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o sff.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sff-dump.2.10.9 sff-dump.2 ln -s sff-dump.2 sff-dump gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o illumina.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/illumina.c -D__mod_name__=tools/sra-dump -D__file_name__=illumina -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/illumina-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o illumina.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/illumina-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o illumina.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s illumina-dump.2.10.9 illumina-dump.2 ln -s illumina-dump.2 illumina-dump gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o abi.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-dump/abi.c -D__mod_name__=tools/sra-dump -D__file_name__=abi -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/abi-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o abi.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/abi-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o abi.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s abi-dump.2.10.9 abi-dump.2 ln -s abi-dump.2 abi-dump make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-dump' @@ -1122,7 +1157,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pileup_v2.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup/pileup_v2.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_v2 -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sra-pileup.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup/sra-pileup.c -D__mod_name__=tools/sra-pileup -D__file_name__=sra-pileup -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-pileup.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 dyn_string.o cmdline_cmn.o out_redir.o perf_log.o reref.o cg_tools.o report_deletes.o ref_regions.o 4na_ascii.o ref_walker_0.o ref_walker.o walk_debug.o pileup_counters.o pileup_index.o pileup_indels.o pileup_varcount.o pileup_stat.o pileup_v2.o sra-pileup.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-pileup.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 dyn_string.o cmdline_cmn.o out_redir.o perf_log.o reref.o cg_tools.o report_deletes.o ref_regions.o 4na_ascii.o ref_walker_0.o ref_walker.o walk_debug.o pileup_counters.o pileup_index.o pileup_indels.o pileup_varcount.o pileup_stat.o pileup_v2.o sra-pileup.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sra-pileup.2.10.9 sra-pileup.2 ln -s sra-pileup.2 sra-pileup gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o inputfiles.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-pileup/inputfiles.c -D__mod_name__=tools/sra-pileup -D__file_name__=inputfiles -D__file_ext__=c @@ -1152,7 +1187,7 @@ 472 | enum out_redir_mode mode; | ^~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sam-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 inputfiles.o perf_log.o rna_splice_log.o sam-dump-opts.o out_redir.o sam-hdr.o sam-hdr1.o matecache.o read_fkt.o sam-aligned.o sam-unaligned.o md_flag.o cg_tools.o sam-dump.o sam-dump3.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sam-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 inputfiles.o perf_log.o rna_splice_log.o sam-dump-opts.o out_redir.o sam-hdr.o sam-hdr1.o matecache.o read_fkt.o sam-aligned.o sam-unaligned.o md_flag.o cg_tools.o sam-dump.o sam-dump3.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sam-dump.2.10.9 sam-dump.2 ln -s sam-dump.2 sam-dump make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-pileup' @@ -1211,7 +1246,7 @@ g++ -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o mem-bank.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader/mem-bank.cpp -D__mod_name__=tools/bam-loader -D__file_name__=mem-bank -D__file_ext__=cpp g++ -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o low-match-count.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader/low-match-count.cpp -D__mod_name__=tools/bam-loader -D__file_name__=low-match-count -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/bam-load.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 bam-loader.o bam.o sam.o alignment-writer.o reference-writer.o sequence-writer.o loader-imp.o mem-bank.o low-match-count.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/bam-load.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 bam-loader.o bam.o sam.o alignment-writer.o reference-writer.o sequence-writer.o loader-imp.o mem-bank.o low-match-count.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s bam-load.2.10.9 bam-load.2 ln -s bam-load.2 bam-load make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/bam-loader' @@ -1272,7 +1307,7 @@ | ^~~~~ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fastq-loader/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fastq-loader/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o id2name.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fastq-loader/id2name.c -D__mod_name__=tools/fastq-loader -D__file_name__=id2name -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/latf-load.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 fastq-loader.o loader-imp.o common-writer.o sequence-writer.o common-reader.o spot-assembler.o fastq-reader.o fastq-grammar.o fastq-lex.o id2name.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/latf-load.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 fastq-loader.o loader-imp.o common-writer.o sequence-writer.o common-reader.o spot-assembler.o fastq-reader.o fastq-grammar.o fastq-lex.o id2name.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s latf-load.2.10.9 latf-load.2 ln -s latf-load.2 latf-load make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/fastq-loader' @@ -1294,7 +1329,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/srapath/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/srapath/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/srapath -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cgi_request.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/srapath/cgi_request.c -D__mod_name__=tools/srapath -D__file_name__=cgi_request -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/srapath/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/srapath/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/srapath -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o srapath.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/srapath/srapath.c -D__mod_name__=tools/srapath -D__file_name__=srapath -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/srapath.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 helper.o line_iter.o repository-mgr.o services.o cgi_request.o srapath.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/srapath.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 helper.o line_iter.o repository-mgr.o services.o cgi_request.o srapath.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s srapath.2.10.9 srapath.2 ln -s srapath.2 srapath make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/srapath' @@ -1305,7 +1340,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-stat/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-stat/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-stat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sra.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-stat/sra.c -D__mod_name__=tools/sra-stat -D__file_name__=sra -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-stat/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-stat/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-stat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sra-stat.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-stat/sra-stat.c -D__mod_name__=tools/sra-stat -D__file_name__=sra-stat -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-stat.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 assembly-statistics.o sra.o sra-stat.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -lload -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-stat.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 assembly-statistics.o sra.o sra-stat.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -lload -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sra-stat.2.10.9 sra-stat.2 ln -s sra-stat.2 sra-stat make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-stat' @@ -1324,7 +1359,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-copy/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-copy/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-copy.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-copy/vdb-copy.c -D__mod_name__=tools/vdb-copy -D__file_name__=vdb-copy -D__file_ext__=c cp /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-copy/vdb-copy.kfg /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/ncbi/vdb-copy.kfg +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-copy.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 context.o helper.o coldefs.o get_platform.o namelist_tools.o copy_meta.o type_matcher.o redactval.o config_values.o vdb-copy.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-copy.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 context.o helper.o coldefs.o get_platform.o namelist_tools.o copy_meta.o type_matcher.o redactval.o config_values.o vdb-copy.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-copy.2.10.9 vdb-copy.2 ln -s vdb-copy.2 vdb-copy make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-copy' @@ -1333,7 +1368,7 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/rd-filter-redact' gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/rd-filter-redact/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/rd-filter-redact/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/rd-filter-redact -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o read-filter-redact.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/rd-filter-redact/read-filter-redact.c -D__mod_name__=tools/rd-filter-redact -D__file_name__=read-filter-redact -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/read-filter-redact.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 read-filter-redact.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/read-filter-redact.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 read-filter-redact.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s read-filter-redact.2.10.9 read-filter-redact.2 ln -s read-filter-redact.2 read-filter-redact make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/rd-filter-redact' @@ -1347,7 +1382,7 @@ g++ -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-config/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-config/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-config -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o interactive2.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-config/interactive2.cpp -D__mod_name__=tools/vdb-config -D__file_name__=interactive2 -D__file_ext__=cpp g++ -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-config/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-config/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-config -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-config-model.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-config/vdb-config-model.cpp -D__mod_name__=tools/vdb-config -D__file_name__=vdb-config-model -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-config.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 configure.o util.o vdb-config.o interactive.o interactive2.o vdb-config-model.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltui_cpp -ltui -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-config.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 configure.o util.o vdb-config.o interactive.o interactive2.o vdb-config-model.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltui_cpp -ltui -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-config.2.10.9 vdb-config.2 ln -s vdb-config.2 vdb-config make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-config' @@ -1356,7 +1391,7 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/align-info' gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-info/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-info/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-info -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o align-info.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-info/align-info.c -D__mod_name__=tools/align-info -D__file_name__=align-info -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/align-info.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 align-info.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/align-info.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 align-info.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s align-info.2.10.9 align-info.2 ln -s align-info.2 align-info make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/align-info' @@ -1378,7 +1413,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/prefetch/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/prefetch/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/prefetch -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o PrfRetrier.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/prefetch/PrfRetrier.c -D__mod_name__=tools/prefetch -D__file_name__=PrfRetrier -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/prefetch/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/prefetch/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/prefetch -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o PrfOutFile.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/prefetch/PrfOutFile.c -D__mod_name__=tools/prefetch -D__file_name__=PrfOutFile -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/prefetch.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kfile-no-q.o PrfMain.o prefetch.o PrfRetrier.o PrfOutFile.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/prefetch.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kfile-no-q.o PrfMain.o prefetch.o PrfRetrier.o PrfOutFile.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s prefetch.2.10.9 prefetch.2 ln -s prefetch.2 prefetch make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/prefetch' @@ -1388,12 +1423,12 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-decrypt.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt/vdb-decrypt.c -D__mod_name__=tools/vdb-decrypt -D__file_name__=vdb-decrypt -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o shared.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt/shared.c -D__mod_name__=tools/vdb-decrypt -D__file_name__=shared -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-decrypt.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-decrypt.o shared.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-decrypt.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-decrypt.o shared.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-decrypt.2.10.9 vdb-decrypt.2 ln -s vdb-decrypt.2 vdb-decrypt gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-encrypt.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-decrypt/vdb-encrypt.c -D__mod_name__=tools/vdb-decrypt -D__file_name__=vdb-encrypt -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-encrypt.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-encrypt.o shared.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-encrypt.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-encrypt.o shared.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-encrypt.2.10.9 vdb-encrypt.2 ln -s vdb-encrypt.2 vdb-encrypt make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-decrypt' @@ -1406,12 +1441,12 @@ 1382 | for (chunk = startId; chunk < endId; ) { | ^~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-validate.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-validate.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-validate.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-validate.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-validate.2.10.9 vdb-validate.2 ln -s vdb-validate.2 vdb-validate g++ -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-validate/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-validate/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-validate -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o check-corrupt.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-validate/check-corrupt.cpp -D__mod_name__=tools/vdb-validate -D__file_name__=check-corrupt -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/check-corrupt.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 check-corrupt.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/check-corrupt.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 check-corrupt.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s check-corrupt.2.10.9 check-corrupt.2 ln -s check-corrupt.2 check-corrupt make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-validate' @@ -1486,13 +1521,13 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o csra-tbl.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/csra-tbl.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-tbl -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o csra-pair.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/csra-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-pair -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-sort.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 caps.o mem.o membank.o paged-membank.o paged-mmapbank.o except.o idx-mapping.o map-file.o col-pair.o row-set.o simple-row-set.o mapping-row-set.o sorting-row-set.o meta-pair.o dir-pair.o tbl-pair.o db-pair.o glob-poslen.o poslen-col-pair.o ref-alignid-col.o buff-writer.o id-mapper-col.o capture-first-half-aligned.o run.o sra-sort.o xcheck-ref-align.o csra-tbl.o csra-pair.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-sort.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 caps.o mem.o membank.o paged-membank.o paged-mmapbank.o except.o idx-mapping.o map-file.o col-pair.o row-set.o simple-row-set.o mapping-row-set.o sorting-row-set.o meta-pair.o dir-pair.o tbl-pair.o db-pair.o glob-poslen.o poslen-col-pair.o ref-alignid-col.o buff-writer.o id-mapper-col.o capture-first-half-aligned.o run.o sra-sort.o xcheck-ref-align.o csra-tbl.o csra-pair.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sra-sort.2.10.9 sra-sort.2 ln -s sra-sort.2 sra-sort gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o csra-tbl.cg.o -DSEQUENCE_BEFORE_SECONDARY=0 /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/csra-tbl.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-tbl -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o csra-pair.cg.o -DSEQUENCE_BEFORE_SECONDARY=0 /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/csra-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-pair -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-sort-cg.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 caps.o mem.o membank.o paged-membank.o paged-mmapbank.o except.o idx-mapping.o map-file.o col-pair.o row-set.o simple-row-set.o mapping-row-set.o sorting-row-set.o meta-pair.o dir-pair.o tbl-pair.o db-pair.o glob-poslen.o poslen-col-pair.o ref-alignid-col.o buff-writer.o id-mapper-col.o capture-first-half-aligned.o run.o sra-sort.o xcheck-ref-align.o csra-tbl.cg.o csra-pair.cg.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-sort-cg.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 caps.o mem.o membank.o paged-membank.o paged-mmapbank.o except.o idx-mapping.o map-file.o col-pair.o row-set.o simple-row-set.o mapping-row-set.o sorting-row-set.o meta-pair.o dir-pair.o tbl-pair.o db-pair.o glob-poslen.o poslen-col-pair.o ref-alignid-col.o buff-writer.o id-mapper-col.o capture-first-half-aligned.o run.o sra-sort.o xcheck-ref-align.o csra-tbl.cg.o csra-pair.cg.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sra-sort-cg.2.10.9 sra-sort-cg.2 ln -s sra-sort-cg.2 sra-sort-cg make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-sort' @@ -1501,7 +1536,7 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/cache-mgr' gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cache-mgr/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cache-mgr/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cache-mgr -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cache-mgr.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cache-mgr/cache-mgr.c -D__mod_name__=tools/cache-mgr -D__file_name__=cache-mgr -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/cache-mgr.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 cache-mgr.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/cache-mgr.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 cache-mgr.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s cache-mgr.2.10.9 cache-mgr.2 ln -s cache-mgr.2 cache-mgr make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/cache-mgr' @@ -1557,7 +1592,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/copycat/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/copycat/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ccsubchunk.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/copycat/ccsubchunk.c -D__mod_name__=tools/copycat -D__file_name__=ccsubchunk -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/copycat/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/copycat/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ccfile.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/copycat/ccfile.c -D__mod_name__=tools/copycat -D__file_name__=ccfile -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/copycat.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 copycat.o ccfileformat.o cccat.o cctree.o cctree-dump.o cctar.o ccsra.o ccsubchunk.o ccfile.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -lkff -lmagic -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/copycat.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 copycat.o ccfileformat.o cccat.o cctree.o cctree-dump.o cctar.o ccsra.o ccsubchunk.o ccfile.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -lkff -lmagic -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s copycat.2.10.9 copycat.2 ln -s copycat.2 copycat make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/copycat' @@ -1613,7 +1648,7 @@ | ^~~ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fasterq-dump/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fasterq-dump/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fasterq-dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fasterq-dump/fasterq-dump.c -D__mod_name__=tools/fasterq-dump -D__file_name__=fasterq-dump -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/fasterq-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 helper.o temp_dir.o progress_thread.o cleanup_task.o index.o lookup_writer.o lookup_reader.o file_printer.o merge_sorter.o sorter.o cmn_iter.o raw_read_iter.o special_iter.o fastq_iter.o join.o tbl_join.o join_results.o temp_registry.o copy_machine.o concatenator.o fasterq-dump.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/fasterq-dump.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 helper.o temp_dir.o progress_thread.o cleanup_task.o index.o lookup_writer.o lookup_reader.o file_printer.o merge_sorter.o sorter.o cmn_iter.o raw_read_iter.o special_iter.o fastq_iter.o join.o tbl_join.o join_results.o temp_registry.o copy_machine.o concatenator.o fasterq-dump.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s fasterq-dump.2.10.9 fasterq-dump.2 ln -s fasterq-dump.2 fasterq-dump make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/fasterq-dump' @@ -1622,7 +1657,7 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/ccextract' gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/ccextract/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/ccextract/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/ccextract -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ccextract.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/ccextract/ccextract.c -D__mod_name__=tools/ccextract -D__file_name__=ccextract -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/ccextract.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 ccextract.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lkxfs -lkxml -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/ccextract.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 ccextract.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lkxfs -lkxml -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s ccextract.2.10.9 ccextract.2 ln -s ccextract.2 ccextract make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/ccextract' @@ -1648,7 +1683,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/pacbio-load/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/pacbio-load/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-progress.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/pacbio-load/pl-progress.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-progress -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/pacbio-load/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/pacbio-load/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pacbio-load.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/pacbio-load/pacbio-load.c -D__mod_name__=tools/pacbio-load -D__file_name__=pacbio-load -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/pacbio-load.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 pl-context.o pl-tools.o pl-zmw.o pl-basecalls_cmn.o pl-sequence.o pl-consensus.o pl-passes.o pl-metrics.o pl-regions.o pl-progress.o pacbio-load.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lkdf5 -lload -lhdf5_serial -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/pacbio-load.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 pl-context.o pl-tools.o pl-zmw.o pl-basecalls_cmn.o pl-sequence.o pl-consensus.o pl-passes.o pl-metrics.o pl-regions.o pl-progress.o pacbio-load.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lkdf5 -lload -lhdf5_serial -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s pacbio-load.2.10.9 pacbio-load.2 ln -s pacbio-load.2 pacbio-load make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/pacbio-load' @@ -1667,7 +1702,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fuse/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fuse/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o remote-fuser-sys.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fuse/unix/remote-fuser-sys.c -D__mod_name__=tools/fuse -D__file_name__=remote-fuser-sys -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fuse/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fuse/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o remote-fuser.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/fuse/remote-fuser.c -D__mod_name__=tools/fuse -D__file_name__=remote-fuser -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/remote-fuser.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 log.o node.o accessor.o kfile-accessor.o remote-xml.o remote-cache.o remote-link.o remote-file.o remote-directory.o remote-fuser-sys.o remote-fuser.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lfuse -lrt -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/remote-fuser.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 log.o node.o accessor.o kfile-accessor.o remote-xml.o remote-cache.o remote-link.o remote-file.o remote-directory.o remote-fuser-sys.o remote-fuser.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lfuse -lrt -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s remote-fuser.2.10.9 remote-fuser.2 ln -s remote-fuser.2 remote-fuser make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/fuse' @@ -1686,7 +1721,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-diff/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-diff/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-diff -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o col_by_col.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-diff/col_by_col.c -D__mod_name__=tools/vdb-diff -D__file_name__=col_by_col -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-diff/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-diff/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-diff -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-diff.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-diff/vdb-diff.c -D__mod_name__=tools/vdb-diff -D__file_name__=vdb-diff -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-diff.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 namelist_tools.o coldefs.o vdb-diff-context.o cmn.o row_by_row.o col_by_col.o vdb-diff.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-diff.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 namelist_tools.o coldefs.o vdb-diff-context.o cmn.o row_by_row.o col_by_col.o vdb-diff.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-diff.2.10.9 vdb-diff.2 ln -s vdb-diff.2 vdb-diff make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-diff' @@ -1703,7 +1738,7 @@ 705 | char * outfile; | ^~~~~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kget.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kget.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kget.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kget.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s kget.2.10.9 kget.2 ln -s kget.2 kget make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/kget' @@ -1717,12 +1752,12 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-sql' gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-sql/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-sql/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-sql -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb_shell.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-sql/vdb_shell.c -D__mod_name__=tools/vdb-sql -D__file_name__=vdb_shell -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-sql.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb_shell.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lvdb-sqlite -Wl,-Bdynamic -lz -lbz2 -ldl -lpthread -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-sql.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb_shell.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lvdb-sqlite -Wl,-Bdynamic -lz -lbz2 -ldl -lpthread -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-sql.2.10.9 vdb-sql.2 ln -s vdb-sql.2 vdb-sql gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-sql/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-sql/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-sql -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastconv.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-sql/fastconv.c -D__mod_name__=tools/vdb-sql -D__file_name__=fastconv -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/fastconv -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 fastconv.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp-norsrc -ltk-version -lvdb-sqlite -Wl,-Bdynamic -lz -lbz2 -ldl -lpthread -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/fastconv -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 fastconv.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp-norsrc -ltk-version -lvdb-sqlite -Wl,-Bdynamic -lz -lbz2 -ldl -lpthread -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-sql' make[4]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/vdb-sql' make[4]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cg-load' @@ -1748,7 +1783,7 @@ gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cg-load/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cg-load/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cg-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o writer-evidence-intervals.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cg-load/writer-evidence-intervals.c -D__mod_name__=tools/cg-load -D__file_name__=writer-evidence-intervals -D__file_ext__=c gcc -c -g -O2 -fdebug-prefix-map=/build/reproducible-path/sra-sdk-2.10.9+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cg-load/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cg-load/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cg-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o writer-seq.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cg-load/writer-seq.c -D__mod_name__=tools/cg-load -D__file_name__=writer-seq -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/cg-load.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 cg-load.o factory-evidence-intervals.o factory-evidence-dnbs.o factory-mappings.o factory-reads.o factory-tag-lfr.o f1_3.o f1_5.o f1_7.o f2_0.o f2_2.o f2_4.o f2_5.o file.o file-version-factory.o formats.o writer-algn.o writer-evidence-dnbs.o writer-evidence-intervals.o writer-seq.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/cg-load.2.10.9 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 cg-load.o factory-evidence-intervals.o factory-evidence-dnbs.o factory-mappings.o factory-reads.o factory-tag-lfr.o f1_3.o f1_5.o f1_7.o f2_0.o f2_2.o f2_4.o f2_5.o file.o file-version-factory.o formats.o writer-algn.o writer-evidence-dnbs.o writer-evidence-intervals.o writer-seq.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s cg-load.2.10.9 cg-load.2 ln -s cg-load.2 cg-load make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/cg-load' @@ -1776,28 +1811,28 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/util' gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o crc32sum.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/crc32sum.c -D__mod_name__=tools/util -D__file_name__=crc32sum -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/crc32sum -DNDEBUG -m64 crc32sum.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/crc32sum -DNDEBUG -m64 crc32sum.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o test-download.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/test-download.c -D__mod_name__=tools/util -D__file_name__=test-download -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/test-download -DNDEBUG -m64 test-download.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/test-download -DNDEBUG -m64 test-download.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kdb-index.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/kdb-index.c -D__mod_name__=tools/util -D__file_name__=kdb-index -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kdb-index.2.10.9 -DNDEBUG -m64 kdb-index.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kdb-index.2.10.9 -DNDEBUG -m64 kdb-index.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s kdb-index.2.10.9 kdb-index.2 ln -s kdb-index.2 kdb-index gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pacbio-correct.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/pacbio-correct.c -D__mod_name__=tools/util -D__file_name__=pacbio-correct -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/pacbio-correct.2.10.9 -DNDEBUG -m64 pacbio-correct.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/pacbio-correct.2.10.9 -DNDEBUG -m64 pacbio-correct.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s pacbio-correct.2.10.9 pacbio-correct.2 ln -s pacbio-correct.2 pacbio-correct gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o schema-replace.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/schema-replace.c -D__mod_name__=tools/util -D__file_name__=schema-replace -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/schema-replace.2.10.9 -DNDEBUG -m64 schema-replace.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/schema-replace.2.10.9 -DNDEBUG -m64 schema-replace.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s schema-replace.2.10.9 schema-replace.2 ln -s schema-replace.2 schema-replace gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sortreadtest.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/sortreadtest.c -D__mod_name__=tools/util -D__file_name__=sortreadtest -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sortreadtest -DNDEBUG -m64 sortreadtest.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sortreadtest -DNDEBUG -m64 sortreadtest.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o rowwritetest.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/rowwritetest.c -D__mod_name__=tools/util -D__file_name__=rowwritetest -D__file_ext__=c /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/rowwritetest.c: In function 'run': /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/rowwritetest.c:287: warning: "STATUS" redefined @@ -1818,19 +1853,19 @@ 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/rowwritetest -DNDEBUG -m64 rowwritetest.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/rowwritetest -DNDEBUG -m64 rowwritetest.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o samview.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/samview.c -D__mod_name__=tools/util -D__file_name__=samview -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/samview -DNDEBUG -m64 samview.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/samview -DNDEBUG -m64 samview.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o testld.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/testld.c -D__mod_name__=tools/util -D__file_name__=testld -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/testld -DNDEBUG -m64 testld.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/testld -DNDEBUG -m64 testld.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o txt2kdb.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/txt2kdb.c -D__mod_name__=tools/util -D__file_name__=txt2kdb -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/txt2kdb -DNDEBUG -m64 txt2kdb.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/txt2kdb -DNDEBUG -m64 txt2kdb.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o validate-names4.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util/validate-names4.c -D__mod_name__=tools/util -D__file_name__=validate-names4 -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/validate-names4 -DNDEBUG -m64 validate-names4.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/validate-names4 -DNDEBUG -m64 validate-names4.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/util' make[4]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/util' make[4]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/align-cache' @@ -1867,7 +1902,7 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/bam-loader' gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o samview.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/bam-loader/samview.c -D__mod_name__=tools/bam-loader -D__file_name__=samview -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/samview.2.10.9 -DNDEBUG -m64 bam.o sam.o samview.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/samview.2.10.9 -DNDEBUG -m64 bam.o sam.o samview.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s samview.2.10.9 samview.2 ln -s samview.2 samview make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/bam-loader' @@ -1896,7 +1931,7 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/rd-filter-redact' gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/rd-filter-redact/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/rd-filter-redact/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/rd-filter-redact -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o test-read-write-cursor.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/rd-filter-redact/test-read-write-cursor.c -D__mod_name__=tools/rd-filter-redact -D__file_name__=test-read-write-cursor -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/test-read-write-cursor.2.10.9 -DNDEBUG -m64 test-read-write-cursor.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -Wl,-Bdynamic -lncbi-wvdb -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/test-read-write-cursor.2.10.9 -DNDEBUG -m64 test-read-write-cursor.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -Wl,-Bdynamic -lncbi-wvdb -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s test-read-write-cursor.2.10.9 test-read-write-cursor.2 ln -s test-read-write-cursor.2 test-read-write-cursor make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/rd-filter-redact' @@ -1923,7 +1958,7 @@ gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/qual-recalib-stat/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/qual-recalib-stat/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/qual-recalib-stat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o writer.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/qual-recalib-stat/writer.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=writer -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/qual-recalib-stat/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/qual-recalib-stat/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/qual-recalib-stat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o qual-recalib-stat.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/qual-recalib-stat/qual-recalib-stat.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=qual-recalib-stat -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/qual-recalib-stat.2.10.9 -DNDEBUG -m64 namelist_tools.o context.o columns.o ref_exclude.o spot_position.o stat_mod_2.o reader.o writer.o qual-recalib-stat.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/qual-recalib-stat.2.10.9 -DNDEBUG -m64 namelist_tools.o context.o columns.o ref_exclude.o spot_position.o stat_mod_2.o reader.o writer.o qual-recalib-stat.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s qual-recalib-stat.2.10.9 qual-recalib-stat.2 ln -s qual-recalib-stat.2 qual-recalib-stat make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/qual-recalib-stat' @@ -1947,7 +1982,7 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-sort' gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o dump-blob-boundaries.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort/dump-blob-boundaries.c -D__mod_name__=tools/sra-sort -D__file_name__=dump-blob-boundaries -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -gcc -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/dump-blob-boundaries -DNDEBUG -m64 dump-blob-boundaries.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lncbi-vdb -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +gcc -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/dump-blob-boundaries -DNDEBUG -m64 dump-blob-boundaries.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lncbi-vdb -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-sort' make[4]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/sra-sort' make[4]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/cache-mgr' @@ -2004,7 +2039,7 @@ | ^~~~ g++ -c -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/ngs-pileup/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/ngs-pileup/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/ngs-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -I /build/reproducible-path/sra-sdk-2.10.9+dfsg/ngs/ngs-c++ -MD -o main.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/tools/ngs-pileup/main.cpp -D__mod_name__=tools/ngs-pileup -D__file_name__=main -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/ngs-pileup.2.10.9 -DNDEBUG -m64 ngs-pileup.o main.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lncbi-ngs-c++ -lncbi-vdb -lngs-c++ -ltk-version -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/ngs-pileup.2.10.9 -DNDEBUG -m64 ngs-pileup.o main.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lncbi-ngs-c++ -lncbi-vdb -lngs-c++ -ltk-version -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s ngs-pileup.2.10.9 ngs-pileup.2 ln -s ngs-pileup.2 ngs-pileup make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/ngs-pileup' @@ -2030,7 +2065,7 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/test/vdb-config' g++ -c -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/vdb-config/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/vdb-config/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/vdb-config -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o test-vdb-config-model.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/test/vdb-config/test-vdb-config-model.cpp -D__mod_name__=test/vdb-config -D__file_name__=test-vdb-config-model -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/test-vdb-config-model -DNDEBUG -m64 test-vdb-config-model.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lktst -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/test-vdb-config-model -DNDEBUG -m64 test-vdb-config-model.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lktst -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/test/vdb-config' make[4]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/vdb-config' make[4]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/align-info' @@ -2103,22 +2138,22 @@ make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/test/fastq-loader' g++ -c -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o test-id2name.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/test-id2name.cpp -D__mod_name__=test/fastq-loader -D__file_name__=test-id2name -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/test-id2name -DNDEBUG -m64 test-id2name.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lktst -lfastqloader -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/test-id2name -DNDEBUG -m64 test-id2name.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lktst -lfastqloader -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/test/fastq-loader' make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/test/fastq-loader' g++ -c -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o wb-test-fastq.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/wb-test-fastq.cpp -D__mod_name__=test/fastq-loader -D__file_name__=wb-test-fastq -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/wb-test-fastq -DNDEBUG -m64 wb-test-fastq.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lktst -lfastqloader -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/wb-test-fastq -DNDEBUG -m64 wb-test-fastq.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lktst -lfastqloader -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/test/fastq-loader' make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/test/fastq-loader' g++ -c -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o wb-test-fastq-parse.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/wb-test-fastq-parse.cpp -D__mod_name__=test/fastq-loader -D__file_name__=wb-test-fastq-parse -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/wb-test-fastq-parse -DNDEBUG -m64 wb-test-fastq-parse.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lktst -lfastqloader -lload -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/wb-test-fastq-parse -DNDEBUG -m64 wb-test-fastq-parse.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lktst -lfastqloader -lload -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/test/fastq-loader' make[5]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/test/fastq-loader' g++ -c -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/interfaces/override -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/linux -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/unix -I/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o test-fastq-loader.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader/test-fastq-loader.cpp -D__mod_name__=test/fastq-loader -D__file_name__=test-fastq-loader -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ -g++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/test-fastq-loader -DNDEBUG -m64 test-fastq-loader.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lktst -lfastqloader -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto +g++ -static-libstdc++ -static-libgcc -o /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/test-fastq-loader -DNDEBUG -m64 test-fastq-loader.o -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -lktst -lfastqloader -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto make[5]: Leaving directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/test/fastq-loader' Testing /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin Running 101 test cases... @@ -2320,10 +2355,10 @@ Get_NotFound (0 s) AddMultiple_Get (0 s) AddRealloc (0 s) -MiltipleBuffers (16 s) -NameTooLong (50 s) +MiltipleBuffers (13 s) +NameTooLong (89 s) -*** No errors detected (67 s total) +*** No errors detected (103 s total) ++++++++++++++++++++++++++++++++++++++++++++++++++++++ Run VDB_CONFIG=/build/reproducible-path/sra-sdk-2.10.9+dfsg/test/fastq-loader /build/reproducible-path/sra-sdk-2.10.9+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/test-bin/wb-test-fastq Running 101 test cases... @@ -2544,135 +2579,135 @@ make[1]: Entering directory '/build/reproducible-path/sra-sdk-2.10.9+dfsg' # upstream installs versioned *.a libs - we only want a single version ls -l debian/tmp/usr/bin -total 37932 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 abi-dump -> abi-dump.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 abi-dump.2 -> abi-dump.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 352104 Jan 6 21:07 abi-dump.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 6 21:07 align-cache -> align-cache.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 6 21:07 align-cache.2 -> align-cache.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 315840 Jan 6 21:07 align-cache.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 6 21:07 align-info -> align-info.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 6 21:07 align-info.2 -> align-info.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 119280 Jan 6 21:07 align-info.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 bam-load -> bam-load.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 bam-load.2 -> bam-load.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 1400080 Jan 6 21:07 bam-load.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 6 21:07 cache-mgr -> cache-mgr.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 6 21:07 cache-mgr.2 -> cache-mgr.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 160552 Jan 6 21:07 cache-mgr.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 6 21:07 ccextract -> ccextract.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 6 21:07 ccextract.2 -> ccextract.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 214672 Jan 6 21:07 ccextract.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 6 21:07 cg-load -> cg-load.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 6 21:07 cg-load.2 -> cg-load.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 776464 Jan 6 21:07 cg-load.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 6 21:07 copycat -> copycat.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 6 21:07 copycat.2 -> copycat.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 561456 Jan 6 21:07 copycat.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 6 21:07 fasterq-dump -> fasterq-dump.2 --rwxr-xr-x 1 pbuilder1 pbuilder1 735248 Jan 6 21:07 fasterq-dump-orig.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Jan 6 21:07 fasterq-dump.2 -> fasterq-dump.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 fasterq-dump.2.10.9 -> sratools.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 6 21:07 fastq-dump -> fastq-dump.2 --rwxr-xr-x 1 pbuilder1 pbuilder1 458160 Jan 6 21:07 fastq-dump-orig.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 6 21:07 fastq-dump.2 -> fastq-dump.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 fastq-dump.2.10.9 -> sratools.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 illumina-dump -> illumina-dump.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Jan 6 21:07 illumina-dump.2 -> illumina-dump.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 326312 Jan 6 21:07 illumina-dump.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 5 Jan 6 21:07 kar -> kar.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 kar.2 -> kar.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 246328 Jan 6 21:07 kar.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 6 21:07 kdbmeta -> kdbmeta.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 6 21:07 kdbmeta.2 -> kdbmeta.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 149096 Jan 6 21:07 kdbmeta.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 6 Jan 6 21:07 kget -> kget.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 6 21:07 kget.2 -> kget.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 148504 Jan 6 21:07 kget.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 6 21:07 latf-load -> latf-load.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 6 21:07 latf-load.2 -> latf-load.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 578376 Jan 6 21:07 latf-load.2.10.9 --rw-r--r-- 1 pbuilder1 pbuilder1 659181 Jan 6 21:07 magic -lrwxrwxrwx 1 pbuilder1 pbuilder1 7 Jan 6 21:07 md5cp -> md5cp.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 6 21:07 md5cp.2 -> md5cp.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 116688 Jan 6 21:07 md5cp.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 6 21:07 pacbio-load -> pacbio-load.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 6 21:07 pacbio-load.2 -> pacbio-load.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 475672 Jan 6 21:07 pacbio-load.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 prefetch -> prefetch.2 --rwxr-xr-x 1 pbuilder1 pbuilder1 502688 Jan 6 21:07 prefetch-orig.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 prefetch.2 -> prefetch.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 prefetch.2.10.9 -> sratools.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Jan 6 21:07 rcexplain -> rcexplain.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Jan 6 21:07 rcexplain.2 -> rcexplain.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 88664 Jan 6 21:07 rcexplain.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Jan 6 21:07 read-filter-redact -> read-filter-redact.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 25 Jan 6 21:07 read-filter-redact.2 -> read-filter-redact.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 139408 Jan 6 21:07 read-filter-redact.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 6 21:07 remote-fuser -> remote-fuser.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Jan 6 21:07 remote-fuser.2 -> remote-fuser.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 405800 Jan 6 21:07 remote-fuser.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 sam-dump -> sam-dump.2 --rwxr-xr-x 1 pbuilder1 pbuilder1 1140392 Jan 6 21:07 sam-dump-orig.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 sam-dump.2 -> sam-dump.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 sam-dump.2.10.9 -> sratools.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 sff-dump -> sff-dump.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 sff-dump.2 -> sff-dump.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 297160 Jan 6 21:07 sff-dump.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 6 21:07 sra-pileup -> sra-pileup.2 --rwxr-xr-x 1 pbuilder1 pbuilder1 584816 Jan 6 21:07 sra-pileup-orig.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 6 21:07 sra-pileup.2 -> sra-pileup.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 sra-pileup.2.10.9 -> sratools.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 sra-sort -> sra-sort.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 6 21:07 sra-sort-cg -> sra-sort-cg.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 6 21:07 sra-sort-cg.2 -> sra-sort-cg.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 1025832 Jan 6 21:07 sra-sort-cg.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 sra-sort.2 -> sra-sort.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 1031616 Jan 6 21:07 sra-sort.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 sra-stat -> sra-stat.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 sra-stat.2 -> sra-stat.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 392024 Jan 6 21:07 sra-stat.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Jan 6 21:07 srapath -> srapath.2 --rwxr-xr-x 1 pbuilder1 pbuilder1 323168 Jan 6 21:07 srapath-orig.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 6 21:07 srapath.2 -> srapath.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 srapath.2.10.9 -> sratools.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 sratools -> sratools.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 sratools.2 -> sratools.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 16716472 Jan 6 21:07 sratools.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 test-sra -> test-sra.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 test-sra.2 -> test-sra.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 325744 Jan 6 21:07 test-sra.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 6 21:07 vdb-config -> vdb-config.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 6 21:07 vdb-config.2 -> vdb-config.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 5494216 Jan 6 21:07 vdb-config.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 vdb-copy -> vdb-copy.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 vdb-copy.2 -> vdb-copy.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 434256 Jan 6 21:07 vdb-copy.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 6 21:07 vdb-decrypt -> vdb-decrypt.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 6 21:07 vdb-decrypt.2 -> vdb-decrypt.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 144776 Jan 6 21:07 vdb-decrypt.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 vdb-diff -> vdb-diff.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 vdb-diff.2 -> vdb-diff.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 194240 Jan 6 21:07 vdb-diff.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 vdb-dump -> vdb-dump.2 --rwxr-xr-x 1 pbuilder1 pbuilder1 1014472 Jan 6 21:07 vdb-dump-orig.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 vdb-dump.2 -> vdb-dump.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 vdb-dump.2.10.9 -> sratools.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Jan 6 21:07 vdb-encrypt -> vdb-encrypt.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Jan 6 21:07 vdb-encrypt.2 -> vdb-encrypt.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 144920 Jan 6 21:07 vdb-encrypt.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Jan 6 21:07 vdb-lock -> vdb-lock.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Jan 6 21:07 vdb-lock.2 -> vdb-lock.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 89376 Jan 6 21:07 vdb-lock.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 6 21:07 vdb-passwd -> vdb-passwd.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 6 21:07 vdb-passwd.2 -> vdb-passwd.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 91520 Jan 6 21:07 vdb-passwd.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Jan 6 21:07 vdb-unlock -> vdb-unlock.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Jan 6 21:07 vdb-unlock.2 -> vdb-unlock.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 89392 Jan 6 21:07 vdb-unlock.2.10.9 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Jan 6 21:07 vdb-validate -> vdb-validate.2 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Jan 6 21:07 vdb-validate.2 -> vdb-validate.2.10.9 --rwxr-xr-x 1 pbuilder1 pbuilder1 287248 Jan 6 21:07 vdb-validate.2.10.9 +total 44392 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 abi-dump -> abi-dump.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 abi-dump.2 -> abi-dump.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 352104 Feb 9 05:42 abi-dump.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Feb 9 05:42 align-cache -> align-cache.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Feb 9 05:42 align-cache.2 -> align-cache.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1913016 Feb 9 05:42 align-cache.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Feb 9 05:42 align-info -> align-info.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Feb 9 05:42 align-info.2 -> align-info.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 119280 Feb 9 05:42 align-info.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 bam-load -> bam-load.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 bam-load.2 -> bam-load.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 3000432 Feb 9 05:42 bam-load.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Feb 9 05:42 cache-mgr -> cache-mgr.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Feb 9 05:42 cache-mgr.2 -> cache-mgr.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 160552 Feb 9 05:42 cache-mgr.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Feb 9 05:42 ccextract -> ccextract.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Feb 9 05:42 ccextract.2 -> ccextract.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 214672 Feb 9 05:42 ccextract.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Feb 9 05:42 cg-load -> cg-load.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Feb 9 05:42 cg-load.2 -> cg-load.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 776464 Feb 9 05:42 cg-load.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Feb 9 05:42 copycat -> copycat.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Feb 9 05:42 copycat.2 -> copycat.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 561456 Feb 9 05:42 copycat.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Feb 9 05:42 fasterq-dump -> fasterq-dump.2 +-rwxr-xr-x 1 pbuilder2 pbuilder2 735248 Feb 9 05:42 fasterq-dump-orig.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Feb 9 05:42 fasterq-dump.2 -> fasterq-dump.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 fasterq-dump.2.10.9 -> sratools.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Feb 9 05:42 fastq-dump -> fastq-dump.2 +-rwxr-xr-x 1 pbuilder2 pbuilder2 458160 Feb 9 05:42 fastq-dump-orig.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Feb 9 05:42 fastq-dump.2 -> fastq-dump.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 fastq-dump.2.10.9 -> sratools.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 illumina-dump -> illumina-dump.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Feb 9 05:42 illumina-dump.2 -> illumina-dump.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 326312 Feb 9 05:42 illumina-dump.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 5 Feb 9 05:42 kar -> kar.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 kar.2 -> kar.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 246328 Feb 9 05:42 kar.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Feb 9 05:42 kdbmeta -> kdbmeta.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Feb 9 05:42 kdbmeta.2 -> kdbmeta.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 149096 Feb 9 05:42 kdbmeta.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 6 Feb 9 05:42 kget -> kget.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Feb 9 05:42 kget.2 -> kget.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 148504 Feb 9 05:42 kget.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Feb 9 05:42 latf-load -> latf-load.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Feb 9 05:42 latf-load.2 -> latf-load.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 578376 Feb 9 05:42 latf-load.2.10.9 +-rw-r--r-- 1 pbuilder2 pbuilder2 659181 Feb 9 05:42 magic +lrwxrwxrwx 1 pbuilder2 pbuilder2 7 Feb 9 05:42 md5cp -> md5cp.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Feb 9 05:42 md5cp.2 -> md5cp.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 116688 Feb 9 05:42 md5cp.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Feb 9 05:42 pacbio-load -> pacbio-load.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Feb 9 05:42 pacbio-load.2 -> pacbio-load.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 475672 Feb 9 05:42 pacbio-load.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 prefetch -> prefetch.2 +-rwxr-xr-x 1 pbuilder2 pbuilder2 502688 Feb 9 05:42 prefetch-orig.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 prefetch.2 -> prefetch.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 prefetch.2.10.9 -> sratools.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Feb 9 05:42 rcexplain -> rcexplain.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Feb 9 05:42 rcexplain.2 -> rcexplain.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 88664 Feb 9 05:42 rcexplain.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Feb 9 05:42 read-filter-redact -> read-filter-redact.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 25 Feb 9 05:42 read-filter-redact.2 -> read-filter-redact.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 139408 Feb 9 05:42 read-filter-redact.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Feb 9 05:42 remote-fuser -> remote-fuser.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Feb 9 05:42 remote-fuser.2 -> remote-fuser.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 405800 Feb 9 05:42 remote-fuser.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 sam-dump -> sam-dump.2 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1140392 Feb 9 05:42 sam-dump-orig.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 sam-dump.2 -> sam-dump.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 sam-dump.2.10.9 -> sratools.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 sff-dump -> sff-dump.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 sff-dump.2 -> sff-dump.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 297160 Feb 9 05:42 sff-dump.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Feb 9 05:42 sra-pileup -> sra-pileup.2 +-rwxr-xr-x 1 pbuilder2 pbuilder2 584816 Feb 9 05:42 sra-pileup-orig.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Feb 9 05:42 sra-pileup.2 -> sra-pileup.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 sra-pileup.2.10.9 -> sratools.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 sra-sort -> sra-sort.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Feb 9 05:42 sra-sort-cg -> sra-sort-cg.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Feb 9 05:42 sra-sort-cg.2 -> sra-sort-cg.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1025832 Feb 9 05:42 sra-sort-cg.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 sra-sort.2 -> sra-sort.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1031616 Feb 9 05:42 sra-sort.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 sra-stat -> sra-stat.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 sra-stat.2 -> sra-stat.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 392024 Feb 9 05:42 sra-stat.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Feb 9 05:42 srapath -> srapath.2 +-rwxr-xr-x 1 pbuilder2 pbuilder2 323168 Feb 9 05:42 srapath-orig.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Feb 9 05:42 srapath.2 -> srapath.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 srapath.2.10.9 -> sratools.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 sratools -> sratools.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 sratools.2 -> sratools.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 18402128 Feb 9 05:42 sratools.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 test-sra -> test-sra.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 test-sra.2 -> test-sra.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 325744 Feb 9 05:42 test-sra.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Feb 9 05:42 vdb-config -> vdb-config.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Feb 9 05:42 vdb-config.2 -> vdb-config.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 7227208 Feb 9 05:42 vdb-config.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 vdb-copy -> vdb-copy.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 vdb-copy.2 -> vdb-copy.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 434256 Feb 9 05:42 vdb-copy.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Feb 9 05:42 vdb-decrypt -> vdb-decrypt.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Feb 9 05:42 vdb-decrypt.2 -> vdb-decrypt.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 144776 Feb 9 05:42 vdb-decrypt.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 vdb-diff -> vdb-diff.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 vdb-diff.2 -> vdb-diff.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 194240 Feb 9 05:42 vdb-diff.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 vdb-dump -> vdb-dump.2 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1014472 Feb 9 05:42 vdb-dump-orig.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 vdb-dump.2 -> vdb-dump.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 vdb-dump.2.10.9 -> sratools.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Feb 9 05:42 vdb-encrypt -> vdb-encrypt.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Feb 9 05:42 vdb-encrypt.2 -> vdb-encrypt.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 144920 Feb 9 05:42 vdb-encrypt.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Feb 9 05:42 vdb-lock -> vdb-lock.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Feb 9 05:42 vdb-lock.2 -> vdb-lock.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 89376 Feb 9 05:42 vdb-lock.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Feb 9 05:42 vdb-passwd -> vdb-passwd.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Feb 9 05:42 vdb-passwd.2 -> vdb-passwd.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 91520 Feb 9 05:42 vdb-passwd.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Feb 9 05:42 vdb-unlock -> vdb-unlock.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Feb 9 05:42 vdb-unlock.2 -> vdb-unlock.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 89392 Feb 9 05:42 vdb-unlock.2.10.9 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Feb 9 05:42 vdb-validate -> vdb-validate.2 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Feb 9 05:42 vdb-validate.2 -> vdb-validate.2.10.9 +-rwxr-xr-x 1 pbuilder2 pbuilder2 287248 Feb 9 05:42 vdb-validate.2.10.9 cd debian/tmp/usr/bin && \ for bin in *-orig.* ; do \ base=${bin%-orig.*} && \ @@ -2807,8 +2842,8 @@ dh_gencontrol -O--no-parallel dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel -dpkg-deb: building package 'sra-toolkit-dbgsym' in '../sra-toolkit-dbgsym_2.10.9+dfsg-2_amd64.deb'. dpkg-deb: building package 'sra-toolkit' in '../sra-toolkit_2.10.9+dfsg-2_amd64.deb'. +dpkg-deb: building package 'sra-toolkit-dbgsym' in '../sra-toolkit-dbgsym_2.10.9+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../sra-sdk_2.10.9+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2816,12 +2851,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1133667/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1133667/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/305055 and its subdirectories -I: Current time: Sat Jan 6 21:07:48 -12 2024 -I: pbuilder-time-stamp: 1704618468 +I: removing directory /srv/workspace/pbuilder/1133667 and its subdirectories +I: Current time: Sun Feb 9 05:43:08 +14 2025 +I: pbuilder-time-stamp: 1739029388