Diff of the two buildlogs: -- --- b1/build.log 2023-07-25 16:39:04.267133000 +0000 +++ b2/build.log 2023-07-25 16:41:39.822003001 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 25 04:36:00 -12 2023 -I: pbuilder-time-stamp: 1690302960 +I: Current time: Tue Aug 27 13:02:08 +14 2024 +I: pbuilder-time-stamp: 1724713328 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration @@ -17,8 +17,8 @@ I: copying [./pplacer_1.1~alpha19-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' -gpgv: keyblock resource '/tmp/dpkg-verify-sig.iUGhPeOu/trustedkeys.kbx': General error -gpgv: Signature made Tue Dec 1 03:24:46 2020 -12 +gpgv: keyblock resource '/tmp/dpkg-verify-sig.r7gt9MH6/trustedkeys.kbx': General error +gpgv: Signature made Wed Dec 2 05:24:46 2020 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key @@ -36,135 +36,166 @@ dpkg-source: info: applying PR-337.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1466623/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3781196/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 27 13:02 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3781196/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3781196/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' - DISTRIBUTION='bullseye' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.1.4(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' + DIRSTACK=() + DISTRIBUTION=bullseye + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='069cd5ee3ec44c039f178e410dc7c895' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1466623' - PS1='# ' - PS2='> ' + INVOCATION_ID=6f5287517e784630b61d688a23d33322 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3781196 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/pbuilderrc_2tQJ --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/b1 --logfile b1/build.log pplacer_1.1~alpha19-4.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/pbuilderrc_soDa --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KF9u9gIi/b2 --logfile b2/build.log pplacer_1.1~alpha19-4.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-1 (2023-07-14) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-1 (2023-07-14) x86_64 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 - -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore - -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp - -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod - -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown - -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp - -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash - -rwxr-xr-x 1 root root 113664 Sep 23 2020 date - -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd - -rwxr-xr-x 1 root root 93936 Sep 23 2020 df - -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir - -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg - lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname - -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo - -rwxr-xr-x 1 root root 28 Jan 24 20:23 egrep - -rwxr-xr-x 1 root root 39680 Sep 23 2020 false - -rwxr-xr-x 1 root root 28 Jan 24 20:23 fgrep - -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt - -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount - -rwxr-xr-x 1 root root 203072 Jan 24 20:23 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname - -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln - -rwxr-xr-x 1 root root 56952 Feb 7 2020 login - -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls - -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk - -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir - -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod - -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp - -rwxr-xr-x 1 root root 59632 Jan 20 2022 more - -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount - -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint - -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv - lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd - lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash - -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink - -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm - -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir - -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jul 6 21:25 sh -> dash - -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep - -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty - -rwsr-xr-x 1 root root 71912 Jan 20 2022 su - -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync - -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar - -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile - -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch - -rwxr-xr-x 1 root root 39680 Sep 23 2020 true - -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server - -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount - -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir - -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl - lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/1466623/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 + -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore + -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp + -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod + -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown + -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp + -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash + -rwxr-xr-x 1 root root 113664 Sep 24 2020 date + -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd + -rwxr-xr-x 1 root root 93936 Sep 24 2020 df + -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir + -rwxr-xr-x 1 root root 84440 Jan 21 2022 dmesg + lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname + -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo + -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 39680 Sep 24 2020 false + -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 69032 Jan 21 2022 findmnt + -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount + -rwxr-xr-x 1 root root 203072 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname + -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln + -rwxr-xr-x 1 root root 56952 Feb 8 2020 login + -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls + -rwxr-xr-x 1 root root 149736 Jan 21 2022 lsblk + -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir + -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod + -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp + -rwxr-xr-x 1 root root 59632 Jan 21 2022 more + -rwsr-xr-x 1 root root 55528 Jan 21 2022 mount + -rwxr-xr-x 1 root root 18664 Jan 21 2022 mountpoint + -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv + lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd + lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash + -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink + -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm + -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir + -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 9 Aug 27 13:02 sh -> /bin/bash + -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep + -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty + -rwsr-xr-x 1 root root 71912 Jan 21 2022 su + -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync + -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar + -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile + -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch + -rwxr-xr-x 1 root root 39680 Sep 24 2020 true + -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server + -rwsr-xr-x 1 root root 35040 Jan 21 2022 umount + -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir + -rwxr-xr-x 1 root root 63744 Jan 21 2022 wdctl + lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/3781196/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -285,7 +316,7 @@ Get: 59 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libzip-ocaml-dev amd64 1.10-1+b1 [48.6 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 ocamlbuild amd64 0.14.0-2+b1 [943 kB] -Fetched 141 MB in 2s (62.4 MB/s) +Fetched 141 MB in 2s (93.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19707 files and directories currently installed.) @@ -545,7 +576,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/pplacer-1.1~alpha19/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pplacer_1.1~alpha19-4_source.changes +I: user script /srv/workspace/pbuilder/3781196/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bullseye +I: user script /srv/workspace/pbuilder/3781196/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/pplacer-1.1~alpha19/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pplacer_1.1~alpha19-4_source.changes dpkg-buildpackage: info: source package pplacer dpkg-buildpackage: info: source version 1.1~alpha19-4 dpkg-buildpackage: info: source distribution unstable @@ -555,7 +590,7 @@ debian/rules clean dh clean --with=ocaml dh_auto_clean - make -j15 clean + make -j16 clean make[1]: Entering directory '/build/pplacer-1.1~alpha19' rm -rf bin rm -f tests.native @@ -581,7 +616,7 @@ make[3]: Entering directory '/build/pplacer-1.1~alpha19' ocamlbuild pplacer.native /usr/bin/ocamlopt.opt unix.cmxa -I /usr/lib/ocaml/ocamlbuild /usr/lib/ocaml/ocamlbuild/ocamlbuildlib.cmxa myocamlbuild.ml /usr/lib/ocaml/ocamlbuild/ocamlbuild.cmx -o myocamlbuild -/bin/sh: 1: git: not found +/bin/sh: line 1: git: command not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: @@ -930,7 +965,7 @@ make guppy.native make[3]: Entering directory '/build/pplacer-1.1~alpha19' ocamlbuild guppy.native -/bin/sh: 1: git: not found +/bin/sh: line 1: git: command not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: @@ -1172,7 +1207,7 @@ make rppr.native make[3]: Entering directory '/build/pplacer-1.1~alpha19' ocamlbuild rppr.native -/bin/sh: 1: git: not found +/bin/sh: line 1: git: command not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: @@ -1237,10 +1272,10 @@ make[2]: Leaving directory '/build/pplacer-1.1~alpha19' make[1]: Leaving directory '/build/pplacer-1.1~alpha19' dh_auto_test - make -j15 test + make -j16 test make[1]: Entering directory '/build/pplacer-1.1~alpha19' ocamlbuild tests.native -/bin/sh: 1: git: not found +/bin/sh: line 1: git: command not found File "_tags", line 8, characters 154-161: Warning: the tag "pkg_str" is not used in any flag or dependency declaration, so it will have no effect; it may be a typo. Otherwise you can use `mark_tag_used` in your myocamlbuild.ml to disable this warning. File "_tags", line 8, characters 112-124: @@ -1382,7 +1417,7 @@ ocamlfind ocamlopt -linkpkg -package batteries -package csv -package xmlm -package gsl -package sqlite3 -package zip -package mcl -package oUnit -thread -cclib -lpthread -cclib -limpala -cclib -lpplacercside -cclib -Lpplacer_src -cclib -lcdd -cclib -Lcdd_src -cclib -lpplacer_pam -cclib -Lpam_src -cclib -lgsl -I cdd_src -I common_src -I json_src -I pplacer_src -I pam_src -I tests -I tests/guppy -I tests/json -I tests/pplacer -I tests/rppr cdd_src/cdd.cmx common_src/ppr.cmx common_src/mapsSets.cmx common_src/number.cmx common_src/algMap.cmx common_src/ppatteries.cmx common_src/linear_utils.cmx json_src/jsontype.cmx json_src/jsonparse.cmx json_src/jsonlex.cmx json_src/json.cmx pplacer_src/simple_json.cmx pplacer_src/refpkg_parse.cmx pplacer_src/fasta.cmx pplacer_src/nuc_models.cmx pplacer_src/prot_models.cmx pplacer_src/stockholm.cmx common_src/alignment.cmx common_src/batchfile.cmx common_src/delayed.cmx common_src/file_parsing.cmx common_src/power_iteration.cmx common_src/sql.cmx common_src/subcommand.cmx common_src/uptri.cmx common_src/version.cmx pplacer_src/myxml.cmx pplacer_src/newick_bark.cmx pplacer_src/bark_map.cmx pplacer_src/stree.cmx pplacer_src/gtree.cmx pplacer_src/edge_rdist.cmx pplacer_src/newick_parse_state.cmx pplacer_src/newick_parser.cmx pplacer_src/newick_lexer.cmx pplacer_src/tax_id.cmx pplacer_src/placement.cmx pplacer_src/pquery.cmx pplacer_src/pquery_io.cmx pplacer_src/newick_gtree.cmx pplacer_src/placerun.cmx pplacer_src/mass_map.cmx pplacer_src/matrix.cmx pam_src/pam_solver.cmx pplacer_src/biom.cmx pplacer_src/decor.cmx pplacer_src/decor_bark.cmx pplacer_src/decor_gtree.cmx pplacer_src/tensor.cmx pplacer_src/linear.cmx pplacer_src/diagd.cmx pplacer_src/gamma.cmx pplacer_src/glvm.cmx pplacer_src/glv_arr.cmx pplacer_src/glv_edge.cmx pplacer_src/gstar_support.cmx pplacer_src/like_stree.cmx pplacer_src/gcat_model.cmx pplacer_src/prefs.cmx pplacer_src/parse_stats.cmx pplacer_src/gmix_model.cmx pplacer_src/tax_classify.cmx pplacer_src/tax_seqinfo.cmx pplacer_src/tax_taxonomy.cmx pplacer_src/tax_map.cmx pplacer_src/refpkg.cmx pplacer_src/convex.cmx pplacer_src/fig.cmx pplacer_src/integration.cmx pplacer_src/minimization.cmx pplacer_src/three_tax.cmx pplacer_src/core.cmx pplacer_src/edge_painting.cmx pplacer_src/edpl.cmx pplacer_src/kr_distance.cmx pplacer_src/gaussian_approx.cmx pplacer_src/string_matrix.cmx pplacer_src/tax_mass.cmx pplacer_src/mokaphy_common.cmx pplacer_src/phyloxml.cmx pplacer_src/placerun_io.cmx pplacer_src/visualization.cmx pplacer_src/voronoi.cmx pplacer_src/guppy_cmdobjs.cmx pplacer_src/guppy_error.cmx pplacer_src/guppy_fpd.cmx pplacer_src/guppy_heat.cmx pplacer_src/r_plots.cmx pplacer_src/tax_gtree.cmx pplacer_src/guppy_kr.cmx pplacer_src/guppy_rarefy.cmx pplacer_src/guppy_trim.cmx pplacer_src/guppy_unifrac.cmx pplacer_src/indep_contrasts.cmx pplacer_src/lpca.cmx pplacer_src/mass_compress.cmx pplacer_src/mass_islands.cmx pplacer_src/mass_overlap.cmx pplacer_src/pquery_distances.cmx pplacer_src/matrix_sig.cmx pplacer_src/pca.cmx pplacer_src/rarefaction.cmx pplacer_src/rppr_convex_taxids.cmx pplacer_src/som.cmx tests/test_util.cmx tests/guppy/test_compress.cmx tests/guppy/test_edge_rdist.cmx tests/guppy/test_edpl.cmx tests/guppy/test_error.cmx tests/guppy/test_fpd.cmx tests/guppy/test_gaussian.cmx tests/guppy/test_heat.cmx tests/guppy/test_indep_contrasts.cmx tests/guppy/test_islands.cmx tests/guppy/test_kr_distance.cmx tests/guppy/test_lpca.cmx tests/guppy/test_newick_bark.cmx tests/guppy/test_overlap.cmx tests/guppy/test_pca.cmx tests/guppy/test_pd.cmx tests/guppy/test_power_iteration.cmx tests/guppy/test_rarefact.cmx tests/guppy/test_rarefy.cmx tests/guppy/test_som.cmx tests/guppy/test_splitify.cmx tests/guppy/test_trim.cmx tests/guppy/test_unifrac.cmx tests/guppy/test_all_guppy.cmx tests/json/test_json.cmx tests/pplacer/test_convex.cmx tests/pplacer/test_edge_labels.cmx tests/pplacer/test_exp_priors.cmx tests/pplacer/test_like.cmx tests/pplacer/test_linear.cmx tests/pplacer/test_matrix.cmx tests/pplacer/test_misc.cmx tests/pplacer/test_newick_parser.cmx tests/pplacer/test_painting.cmx tests/pplacer/test_placefile.cmx tests/pplacer/test_ppatteries.cmx tests/pplacer/test_rerooting.cmx tests/pplacer/test_all_pplacer.cmx tests/rppr/test_convex_taxids.cmx tests/rppr/test_voronoi.cmx tests/rppr/test_all_rppr.cmx tests/tests.cmx cdd_src/libcdd.a pam_src/libpplacer_pam.a pplacer_src/libpplacercside.a -o tests/tests.native ./tests.native ................................................................................................................................................................................................................................ -Ran: 224 tests in: 8.42 seconds. +Ran: 224 tests in: 8.67 seconds. OK make[1]: Leaving directory '/build/pplacer-1.1~alpha19' create-stamp debian/debhelper-build-stamp @@ -1407,8 +1442,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'pplacer' in '../pplacer_1.1~alpha19-4_amd64.deb'. dpkg-deb: building package 'pplacer-dbgsym' in '../pplacer-dbgsym_1.1~alpha19-4_amd64.deb'. +dpkg-deb: building package 'pplacer' in '../pplacer_1.1~alpha19-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pplacer_1.1~alpha19-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1416,12 +1451,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3781196/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3781196/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1466623 and its subdirectories -I: Current time: Tue Jul 25 04:39:03 -12 2023 -I: pbuilder-time-stamp: 1690303143 +I: removing directory /srv/workspace/pbuilder/3781196 and its subdirectories +I: Current time: Tue Aug 27 13:04:41 +14 2024 +I: pbuilder-time-stamp: 1724713481